HHSEARCH alignment of GI: 254780751 and SCOP domain: d1sroa_

Alignment

Probab=98.16  E-value=1.9e-06  Score=60.71  Aligned_cols=41  Identities=32%  Similarity=0.498  Sum_probs=36.4

Q ss_pred             CCCCCEEEEEEEEECCCCCEEEEEECCCCCCCCCHHHCCCCCC
Q ss_conf             0428787989978363882313532789771302221371210
Q gi|254780751|r   37 QIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIHPDYY   79 (723)
Q Consensus        37 ~~~GnIY~G~V~~V~p~lqAAFVdiG~~k~gFL~~~ei~~~y~   79 (723)
                      -.+|.||.|+|++|.+.  +|||+++.+..||||.+|+.++|.
T Consensus         3 ~kvG~iv~G~V~~v~~~--G~fV~l~~~~~Glv~~sels~~~~   43 (76)
T d1sroa_           3 IEVGRVYTGKVTRIVDF--GAFVAIGGGKEGLVHISQIADKRV   43 (76)
T ss_dssp             CCTTSEEEEEEEEEETT--EEEEECSSSCCCBCCTTSSCSSCC
T ss_pred             CCCCCEEEEEEEEEECC--EEEEEECCCCEEEEEHHHHCCCCC
T ss_conf             78899999999999676--799995789789987277276654

SCOP domain information

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Cold shock DNA-binding domain-like
domain: S1 RNA-binding domain of polyribonucleotide phosphorylase, PNPase
species: Escherichia coli [TaxId: 562]