HHSEARCH alignment of GI: 254780751 and SCOP domain: d2c35b1

Alignment
>d2c35b1 b.40.4.5 (B:78-171) C-terminal domain of RNA polymerase II subunit RBP7 (RpoE) {Human (Homo sapiens) [TaxId: 9606]}
Probab=94.21  E-value=0.038  Score=30.81  Aligned_cols=40  Identities=25%  Similarity=0.375  Sum_probs=34.8

Q ss_pred             CCCCCEEEEEEEEECCCCCEEEEEECCCCCCCCCHHHCCCCC-C
Q ss_conf             042878798997836388231353278977130222137121-0
Q gi|254780751|r   37 QIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIHPDY-Y   79 (723)
Q Consensus        37 ~~~GnIY~G~V~~V~p~lqAAFVdiG~~k~gFL~~~ei~~~y-~   79 (723)
                      ..+|.++-|+|+.|.+  .++||++|.= .||+|.+.+..+| |
T Consensus         2 Pf~Gev~~g~V~~v~~--~G~fv~lg~~-~~~v~~~~l~~d~~y   42 (94)
T d2c35b1           2 PFKGEVVDAVVTQVNK--VGLFTEIGPM-SCFISRHSIPSEMEF   42 (94)
T ss_dssp             CCTTCEEEEEEEEEET--TEEEEEETTE-EEEEEGGGSCTTEEE
T ss_pred             CCCCCEEEEEEEEEEE--EEEEEEECCC-EEEEEHHHCCCCEEE
T ss_conf             9889999999998970--4899995273-688871466853266


SCOP domain information

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Cold shock DNA-binding domain-like
domain: C-terminal domain of RNA polymerase II subunit RBP7 (RpoE)
species: Human (Homo sapiens) [TaxId: 9606]