HHSEARCH alignment of GI: 254780751 and SCOP domain: d2nn6g1

Alignment
>d2nn6g1 b.40.4.5 (G:107-194) S1-domain of exosome component 3 (RRP40) {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.12  E-value=0.00058  Score=43.46  Aligned_cols=36  Identities=28%  Similarity=0.367  Sum_probs=31.9

Q ss_pred             CCCCCEEEEEEEEECCCCCEEEEEECCCCCCCCCHHHC
Q ss_conf             04287879899783638823135327897713022213
Q gi|254780751|r   37 QIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI   74 (723)
Q Consensus        37 ~~~GnIY~G~V~~V~p~lqAAFVdiG~~k~gFL~~~ei   74 (723)
                      ..+|+++.|+|+++-  ...+|||||...+||||++++
T Consensus         4 P~~GD~ViG~V~~~~--~~~~~VdI~s~~~a~L~~~~f   39 (88)
T d2nn6g1           4 PVKGDHVIGIVTAKS--GDIFKVDVGGSEPASLSYLSF   39 (88)
T ss_dssp             CCSSEEEEEEEEEEE--TTEEEEECSSSSCCCEESCSS
T ss_pred             CCCCCEEEEEEEEEE--CCEEEEECCCCEEEEEEHHHC
T ss_conf             989999999999996--871999848990699708883


SCOP domain information

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Cold shock DNA-binding domain-like
domain: S1-domain of exosome component 3 (RRP40)
species: Human (Homo sapiens) [TaxId: 9606]