HHSEARCH alignment of GI: 254780751 and SCOP domain: d2z0sa1

Alignment
>d2z0sa1 b.40.4.5 (A:60-147) S1-domain of exosome complex RNA-binding protein 1, ECR1 {Aeropyrum pernix [TaxId: 56636]}
Probab=97.95  E-value=5.5e-06  Score=57.51  Aligned_cols=41  Identities=15%  Similarity=0.192  Sum_probs=35.8

Q ss_pred             CCCCCEEEEEEEEECCCCCEEEEEECCCCCCCCCHHHCCCCCC
Q ss_conf             0428787989978363882313532789771302221371210
Q gi|254780751|r   37 QIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIHPDYY   79 (723)
Q Consensus        37 ~~~GnIY~G~V~~V~p~lqAAFVdiG~~k~gFL~~~ei~~~y~   79 (723)
                      ..+|+++.|+|++|.+  ..||||||.+..||||.+|+..++.
T Consensus         5 Pk~GdvV~G~V~~v~~--~g~fV~i~~~~~g~l~~se~~~~~~   45 (88)
T d2z0sa1           5 PQAGDVVIGLIQSVGI--MNWFVDINSPYVAVLSVQDFLGRPF   45 (88)
T ss_dssp             CCTTCCEEEEEEEECS--SEEEEECSSSSCEEEEHHHHHTSCC
T ss_pred             CCCCCEEEEEEEEEEC--CEEEEEECCCEEEEEEHHHHCCCCC
T ss_conf             8999999999999979--8699996899277871699274433


SCOP domain information

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Cold shock DNA-binding domain-like
domain: S1-domain of exosome complex RNA-binding protein 1, ECR1
species: Aeropyrum pernix [TaxId: 56636]