RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780751|ref|YP_003065164.1| ribonuclease E [Candidatus
Liberibacter asiaticus str. psy62]
         (723 letters)



>d1smxa_ b.40.4.5 (A:) S1-domain of Ribonuclease E {Escherichia coli
           [TaxId: 562]}
          Length = 87

 Score = 62.3 bits (151), Expect = 1e-10
 Identities = 29/66 (43%), Positives = 38/66 (57%)

Query: 41  NIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDS 100
           NIY  K+TR+EPSL+AAFVDYG  RHGFLP  EI  +Y+   +S       +  + +   
Sbjct: 2   NIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQE 61

Query: 101 EAVADD 106
             V  D
Sbjct: 62  VIVQID 67



 Score = 54.6 bits (131), Expect = 3e-08
 Identities = 22/44 (50%), Positives = 32/44 (72%)

Query: 161 PKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAG 204
                 +  I++V++  Q ++VQI KEERGNKGAA+TT++SLAG
Sbjct: 43  NYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAG 86


>d1vjta1 c.2.1.5 (A:-1-191) Putative alpha-glucosidase TM0752
           {Thermotoga maritima [TaxId: 2336]}
          Length = 193

 Score = 29.4 bits (65), Expect = 0.96
 Identities = 13/106 (12%), Positives = 35/106 (33%), Gaps = 6/106 (5%)

Query: 252 AGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEII 311
           AG+ R  +++  D      L      + +  V    +     L ++ + +L    +  + 
Sbjct: 10  AGSVRFALQLVGDIAQTEELSREDTHIYMMDVHERRLNASYILARKYVEELNS-PVKIVK 68

Query: 312 VSGEKGYREAKDFMKLLMPSYA-----RIVRQYEDPHPIFFRSGIE 352
            S      +  DF+      Y         +++++   +  + G  
Sbjct: 69  TSSLDEAIDGADFIINTAYPYDPRYHDSGSQRWDEVTKVGEKHGYY 114


>d1knva_ c.52.1.7 (A:) Restriction endonuclease Bse634I {Bacillus
           stearothermophilus [TaxId: 1422]}
          Length = 290

 Score = 28.0 bits (62), Expect = 2.5
 Identities = 11/45 (24%), Positives = 22/45 (48%), Gaps = 3/45 (6%)

Query: 262 KRDFEYLMRLWDNV---RELALNSVAPHLVYEEGNLIKRAIRDLY 303
           K +F+Y     + V    + AL + A H +    +  +RA+ D++
Sbjct: 228 KAEFKYYGASSEPVSKADDDALQTAATHTIVNVNSTPERAVDDIF 272


>d1a6fa_ d.14.1.2 (A:) RNase P protein {Bacillus subtilis [TaxId:
           1423]}
          Length = 113

 Score = 27.9 bits (62), Expect = 2.8
 Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 7/62 (11%)

Query: 216 GETISRKITNPVDRKNLKEIARGLEVPAGMG-------VILRTAGASRTKIEIKRDFEYL 268
           G ++S+KI N V R  +K + R   +            +I R   +  T  E K+  ++L
Sbjct: 46  GLSVSKKIGNAVMRNRIKRLIRQAFLEEKERLKEKDYIIIARKPASQLTYEETKKSLQHL 105

Query: 269 MR 270
            R
Sbjct: 106 FR 107


>d1m4za_ b.34.12.1 (A:) Origin-recognition complex protein 120kDa
           subunit, Orc1p {Baker's yeast (Saccharomyces cerevisiae)
           [TaxId: 4932]}
          Length = 217

 Score = 27.6 bits (61), Expect = 3.7
 Identities = 11/35 (31%), Positives = 16/35 (45%)

Query: 618 NIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSD 652
            I++ +  G I    ++R RRR A   H     SD
Sbjct: 15  EIITTDEQGNIIDGGQKRLRRRGAKTEHYLKRSSD 49


>d1e3pa2 b.40.4.5 (A:656-717) S1 RNA-binding domain of
          polyribonucleotide phosphorylase, PNPase {Streptomyces
          antibioticus [TaxId: 1890]}
          Length = 62

 Score = 27.0 bits (60), Expect = 5.8
 Identities = 8/47 (17%), Positives = 14/47 (29%), Gaps = 2/47 (4%)

Query: 46 KVTRVEPSLQAAFVDYGGNRHGFLPFLEIHPDYYQIPFSDRQALLKE 92
           V +       AFV     + G L   +I          + + +L  
Sbjct: 2  SVVKTTTF--GAFVSLLPGKDGLLHISQIRKLAGGKRVENVEDVLGV 46


>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase
           RumA, catalytic domain {Escherichia coli [TaxId: 562]}
          Length = 358

 Score = 26.9 bits (58), Expect = 6.5
 Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 1/35 (2%)

Query: 286 HLVYEEGNLIKR-AIRDLYCKDISEIIVSGEKGYR 319
           H   +     K  A+  L   D+SE+I     GYR
Sbjct: 20  HASVDLQQRSKSAALARLMKHDVSEVIADVPWGYR 54


>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase,
           L-HICDH {Lactobacillus confusus [TaxId: 1583]}
          Length = 146

 Score = 26.6 bits (58), Expect = 6.8
 Identities = 18/102 (17%), Positives = 30/102 (29%), Gaps = 7/102 (6%)

Query: 190 GNKGAAVTTYLSLAGRYSVLM-----PNTSKGETISRKITNPVDRKNLKEIARGLEVPAG 244
           GN GAAV   L   G     +         K + I  +        +   +       A 
Sbjct: 10  GNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDWAALAD 69

Query: 245 MGVILRTAGASRTKIEIKRD--FEYLMRLWDNVRELALNSVA 284
             V++ T G  + + +      F  L      V+ +  N   
Sbjct: 70  ADVVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKE 111


>d1fcqa_ c.1.8.9 (A:) Bee venom hyaluronidase {Honeybee (Apis
           mellifera) [TaxId: 7460]}
          Length = 321

 Score = 26.0 bits (57), Expect = 10.0
 Identities = 7/29 (24%), Positives = 15/29 (51%), Gaps = 1/29 (3%)

Query: 400 LQTNLE-AAEEIARQLRLRDLAGLIVVDF 427
           L  +L+   + +  Q+  +   G+ V+DF
Sbjct: 75  LTKHLQVFRDHLINQIPDKSFPGVGVIDF 103


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.132    0.369 

Gapped
Lambda     K      H
   0.267   0.0685    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,633,963
Number of extensions: 127045
Number of successful extensions: 426
Number of sequences better than 10.0: 1
Number of HSP's gapped: 421
Number of HSP's successfully gapped: 19
Length of query: 723
Length of database: 2,407,596
Length adjustment: 92
Effective length of query: 631
Effective length of database: 1,144,436
Effective search space: 722139116
Effective search space used: 722139116
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (25.4 bits)