BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780751|ref|YP_003065164.1| ribonuclease E [Candidatus Liberibacter asiaticus str. psy62] (723 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780751|ref|YP_003065164.1| ribonuclease E [Candidatus Liberibacter asiaticus str. psy62] Length = 723 Score = 1486 bits (3847), Expect = 0.0, Method: Compositional matrix adjust. Identities = 723/723 (100%), Positives = 723/723 (100%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD Sbjct: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL Sbjct: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL Sbjct: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE Sbjct: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR Sbjct: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ Sbjct: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360 Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA Sbjct: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420 Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST Sbjct: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480 Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV Sbjct: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540 Query: 541 EYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQD 600 EYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQD Sbjct: 541 EYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQD 600 Query: 601 EALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVI 660 EALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVI Sbjct: 601 EALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVI 660 Query: 661 DDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWK 720 DDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWK Sbjct: 661 DDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWK 720 Query: 721 RRK 723 RRK Sbjct: 721 RRK 723 >gi|254780425|ref|YP_003064838.1| apolipoprotein N-acyltransferase [Candidatus Liberibacter asiaticus str. psy62] Length = 518 Score = 25.4 bits (54), Expect = 3.1, Method: Compositional matrix adjust. Identities = 14/38 (36%), Positives = 19/38 (50%) Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDS 663 G+ K R A H D + +VS+I N+IDDS Sbjct: 391 GLSEKLRLYPLLFSDALFHQDINNLENVSAILNIIDDS 428 >gi|254780687|ref|YP_003065100.1| flagellar C-ring protein [Candidatus Liberibacter asiaticus str. psy62] Length = 318 Score = 24.6 bits (52), Expect = 5.8, Method: Compositional matrix adjust. Identities = 9/26 (34%), Positives = 18/26 (69%) Query: 141 ANNDVVSNVEDVKGGSPEDVPKKFKR 166 +NN V++ +E++ G S E +P+ + R Sbjct: 100 SNNLVITLLENLLGASHETIPQLYNR 125 >gi|254781187|ref|YP_003065600.1| putative phage terminase, large subunit [Candidatus Liberibacter asiaticus str. psy62] Length = 367 Score = 24.6 bits (52), Expect = 6.0, Method: Compositional matrix adjust. Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%) Query: 280 LNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKG 317 +N+ PH EE + + AI DLY I ++GE G Sbjct: 293 VNNFIPHNYIEEA-MSREAIDDLYAPLIMGCDIAGEGG 329 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.316 0.132 0.369 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 446,562 Number of Sequences: 1233 Number of extensions: 18796 Number of successful extensions: 77 Number of sequences better than 100.0: 7 Number of HSP's better than 100.0 without gapping: 5 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 68 Number of HSP's gapped (non-prelim): 7 length of query: 723 length of database: 328,796 effective HSP length: 81 effective length of query: 642 effective length of database: 228,923 effective search space: 146968566 effective search space used: 146968566 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 42 (20.8 bits)