BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780751|ref|YP_003065164.1| ribonuclease E [Candidatus
Liberibacter asiaticus str. psy62]
         (723 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780751|ref|YP_003065164.1| ribonuclease E [Candidatus Liberibacter asiaticus str. psy62]
          Length = 723

 Score = 1486 bits (3847), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 723/723 (100%), Positives = 723/723 (100%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD
Sbjct: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
           YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL
Sbjct: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
           EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL
Sbjct: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
           LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE
Sbjct: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
           VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR
Sbjct: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360
           DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ
Sbjct: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360

Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420
           TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA
Sbjct: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420

Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480
           GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST
Sbjct: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480

Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540
           TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV
Sbjct: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540

Query: 541 EYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQD 600
           EYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQD
Sbjct: 541 EYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQD 600

Query: 601 EALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVI 660
           EALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVI
Sbjct: 601 EALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVI 660

Query: 661 DDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWK 720
           DDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWK
Sbjct: 661 DDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWK 720

Query: 721 RRK 723
           RRK
Sbjct: 721 RRK 723


>gi|254780425|ref|YP_003064838.1| apolipoprotein N-acyltransferase [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 518

 Score = 25.4 bits (54), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 14/38 (36%), Positives = 19/38 (50%)

Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDS 663
           G+  K R        A  H D   + +VS+I N+IDDS
Sbjct: 391 GLSEKLRLYPLLFSDALFHQDINNLENVSAILNIIDDS 428


>gi|254780687|ref|YP_003065100.1| flagellar C-ring protein [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 318

 Score = 24.6 bits (52), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 9/26 (34%), Positives = 18/26 (69%)

Query: 141 ANNDVVSNVEDVKGGSPEDVPKKFKR 166
           +NN V++ +E++ G S E +P+ + R
Sbjct: 100 SNNLVITLLENLLGASHETIPQLYNR 125


>gi|254781187|ref|YP_003065600.1| putative phage terminase, large subunit [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 367

 Score = 24.6 bits (52), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)

Query: 280 LNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKG 317
           +N+  PH   EE  + + AI DLY   I    ++GE G
Sbjct: 293 VNNFIPHNYIEEA-MSREAIDDLYAPLIMGCDIAGEGG 329


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.316    0.132    0.369 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 446,562
Number of Sequences: 1233
Number of extensions: 18796
Number of successful extensions: 77
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 68
Number of HSP's gapped (non-prelim): 7
length of query: 723
length of database: 328,796
effective HSP length: 81
effective length of query: 642
effective length of database: 228,923
effective search space: 146968566
effective search space used: 146968566
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 42 (20.8 bits)