HHsearch results for GI: 254780752 and protein with PDBid: 1alq_A

>1alq_A CP254 beta-lactamase; hydrolase, circular permuted, antibiotic resistance; 1.80A {Staphylococcus aureus} SCOP: e.3.1.1
Probab=98.83  E-value=1.4e-08  Score=74.43  Aligned_cols=182  Identities=15%  Similarity=0.081  Sum_probs=107.4

Q ss_pred             CCEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEECCC-CEEEEEE
Q ss_conf             311664065666611787213234443320012335665310000127887402466544565237880378-5266641
Q gi|254780752|r  440 QGGLIAMDPRTGRILATIGGFSYSQSEFNRSTQAMRQPGSCFKPIVYAAALDSGYTPASVIMDAPIEVVSRG-KIWKPEN  518 (817)
Q Consensus       440 q~a~V~id~~TG~IlA~vGg~d~~~~~~NrA~~~~rqpGSt~KP~vy~~Ale~G~tp~t~~~D~p~~~~~~~-~~~~p~N  518 (817)
                      ..+++++|..||+++++-+             +.+++|.|++|.++.+++|++-- .. .+ |..+.+.... ..|.+..
T Consensus        59 ~~gv~~~D~~tG~~~~~n~-------------d~~~~~ASt~Kl~~a~~~l~~v~-~g-~l-d~~v~i~~~~~~~~~~~~  122 (266)
T 1alq_A           59 HIGVYALDTKSGKEVKFNS-------------DKRFAYASTSKAINSAILLEQVP-YN-KL-NKKVHINKDDIVAYSPIL  122 (266)
T ss_dssp             EEEEEEEETTTCCEEEEST-------------TSCEECGGGHHHHHHHHHHHSSC-GG-GT-TCEEEECGGGCCSSCTTG
T ss_pred             EEEEEEEECCCCCEEEECC-------------CCCCCCHHHHHHHHHHHHHHHHH-CC-CC-CCEEEECHHHHHCCCCCC
T ss_conf             6999999999998888889-------------98353478999999999999720-47-87-751675388863369731


Q ss_pred             CCCCCCCHHH----HHHHHHHHCCHHHHHHHHHCCC-CEEEEEECCCCCCCCCCCC-----CCCCC--CCCEEHHHHHHH
Q ss_conf             2765442256----6666653044022588762597-2352110135565556766-----56344--510000377674
Q gi|254780752|r  519 YSKNFSGAST----LRFGLEKSRNLMTVRLAHNMGM-TVVADYAENFGIYDKMLPV-----LPMSL--GAGETTVLRMVS  586 (817)
Q Consensus       519 ~~~~~~G~it----l~~Al~~S~N~~~v~l~~~~G~-~~~~~~~~~~Gi~~~~~~~-----~s~al--G~~~vtpl~la~  586 (817)
                      . ......++    ++.++..|.|+.+..|++.+|. +.+..+++.+|...-....     .....  +....||.+|+.
T Consensus       123 ~-~~~g~~~tl~dll~~mi~~SdN~Aa~~L~~~lGg~~~~~~~~~~~G~~~t~l~~~~~~~~~~~~~~~~n~tTa~d~a~  201 (266)
T 1alq_A          123 E-KYVGKDITLKALIEASMTYSDNTANNKIIKEIGGIKKVKQRLKELGDKVTNPVRYEIELNYYSPKSKKDTSTPAAFGK  201 (266)
T ss_dssp             G-GGTTEEEEHHHHHHHHHHHCCHHHHHHHHHHHTCHHHHHHHHHHTTCCSCCCCCCTTGGGCCCTTCCTTEECHHHHHH
T ss_pred             C-CCCCCCEEHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHCCHHHEECCCCCCCCCCCCCCCCCCCCCHHHHHH
T ss_conf             0-468972359999998775487999999999977616899999974732276267776555677787444449999999


Q ss_pred             HHHHCCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHCCC
Q ss_conf             32201574403544666764102443013358532355666666655455467554353589999999999999873480
Q gi|254780752|r  587 AYAVFANGGKQIRPSFIDRIQNRYGKTIFNQEQRICDDCNYDTWNGQDEPEIIDKREQVLDPMTAYQITSMLEGVIKHGT  666 (817)
Q Consensus       587 aya~~AN~G~~~~P~~i~kI~d~~G~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~~~a~~~~~~L~~vv~~GT  666 (817)
                      .+..|..+.                                                 .+++.....+.++|........
T Consensus       202 ll~~l~~~~-------------------------------------------------~ls~~~~~~l~~~m~~~~~~~~  232 (266)
T 1alq_A          202 TLNKLIANG-------------------------------------------------KLSKENKKFLLDLMLNNKSGDT  232 (266)
T ss_dssp             HHHHHTTSS-------------------------------------------------SCCHHHHHHHHHHHHTCGGGTT
T ss_pred             HHHHHHHCC-------------------------------------------------CCCHHHHHHHHHHHHCCCCCCC
T ss_conf             999998578-------------------------------------------------7899999999999963964430


Q ss_pred             EEHHCC-CCCCEEEEECCCCCC
Q ss_conf             432105-996046760467897
Q gi|254780752|r  667 ATGKVR-LNRPVAGKTGTTSSY  687 (817)
Q Consensus       667 g~~a~~-~~~~iaGKTGTt~~~  687 (817)
                      .-++.. .++.|++||||+..+
T Consensus       233 ~l~~~lP~~~~Va~KTGt~~~~  254 (266)
T 1alq_A          233 LIKDGVPKDYKVADKSGQAITY  254 (266)
T ss_dssp             THHHHSCTTCEEEEEEEECSST
T ss_pred             HHHHCCCCCCEEEEEECCCCCC
T ss_conf             0554399998899965057767