HHsearch results for GI: 254780752 and protein with PDBid: 1alq_A
>1alq_A CP254 beta-lactamase; hydrolase, circular permuted, antibiotic resistance; 1.80A {Staphylococcus aureus} SCOP: e.3.1.1
Probab=98.83 E-value=1.4e-08 Score=74.43 Aligned_cols=182 Identities=15% Similarity=0.081 Sum_probs=107.4
Q ss_pred CCEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEECCC-CEEEEEE
Q ss_conf 311664065666611787213234443320012335665310000127887402466544565237880378-5266641
Q gi|254780752|r 440 QGGLIAMDPRTGRILATIGGFSYSQSEFNRSTQAMRQPGSCFKPIVYAAALDSGYTPASVIMDAPIEVVSRG-KIWKPEN 518 (817)
Q Consensus 440 q~a~V~id~~TG~IlA~vGg~d~~~~~~NrA~~~~rqpGSt~KP~vy~~Ale~G~tp~t~~~D~p~~~~~~~-~~~~p~N 518 (817)
..+++++|..||+++++-+ +.+++|.|++|.++.+++|++-- .. .+ |..+.+.... ..|.+..
T Consensus 59 ~~gv~~~D~~tG~~~~~n~-------------d~~~~~ASt~Kl~~a~~~l~~v~-~g-~l-d~~v~i~~~~~~~~~~~~ 122 (266)
T 1alq_A 59 HIGVYALDTKSGKEVKFNS-------------DKRFAYASTSKAINSAILLEQVP-YN-KL-NKKVHINKDDIVAYSPIL 122 (266)
T ss_dssp EEEEEEEETTTCCEEEEST-------------TSCEECGGGHHHHHHHHHHHSSC-GG-GT-TCEEEECGGGCCSSCTTG
T ss_pred EEEEEEEECCCCCEEEECC-------------CCCCCCHHHHHHHHHHHHHHHHH-CC-CC-CCEEEECHHHHHCCCCCC
T ss_conf 6999999999998888889-------------98353478999999999999720-47-87-751675388863369731
Q ss_pred CCCCCCCHHH----HHHHHHHHCCHHHHHHHHHCCC-CEEEEEECCCCCCCCCCCC-----CCCCC--CCCEEHHHHHHH
Q ss_conf 2765442256----6666653044022588762597-2352110135565556766-----56344--510000377674
Q gi|254780752|r 519 YSKNFSGAST----LRFGLEKSRNLMTVRLAHNMGM-TVVADYAENFGIYDKMLPV-----LPMSL--GAGETTVLRMVS 586 (817)
Q Consensus 519 ~~~~~~G~it----l~~Al~~S~N~~~v~l~~~~G~-~~~~~~~~~~Gi~~~~~~~-----~s~al--G~~~vtpl~la~ 586 (817)
. ......++ ++.++..|.|+.+..|++.+|. +.+..+++.+|...-.... ..... +....||.+|+.
T Consensus 123 ~-~~~g~~~tl~dll~~mi~~SdN~Aa~~L~~~lGg~~~~~~~~~~~G~~~t~l~~~~~~~~~~~~~~~~n~tTa~d~a~ 201 (266)
T 1alq_A 123 E-KYVGKDITLKALIEASMTYSDNTANNKIIKEIGGIKKVKQRLKELGDKVTNPVRYEIELNYYSPKSKKDTSTPAAFGK 201 (266)
T ss_dssp G-GGTTEEEEHHHHHHHHHHHCCHHHHHHHHHHHTCHHHHHHHHHHTTCCSCCCCCCTTGGGCCCTTCCTTEECHHHHHH
T ss_pred C-CCCCCCEEHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHCCHHHEECCCCCCCCCCCCCCCCCCCCCHHHHHH
T ss_conf 0-468972359999998775487999999999977616899999974732276267776555677787444449999999
Q ss_pred HHHHCCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHCCC
Q ss_conf 32201574403544666764102443013358532355666666655455467554353589999999999999873480
Q gi|254780752|r 587 AYAVFANGGKQIRPSFIDRIQNRYGKTIFNQEQRICDDCNYDTWNGQDEPEIIDKREQVLDPMTAYQITSMLEGVIKHGT 666 (817)
Q Consensus 587 aya~~AN~G~~~~P~~i~kI~d~~G~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~~~a~~~~~~L~~vv~~GT 666 (817)
.+..|..+. .+++.....+.++|........
T Consensus 202 ll~~l~~~~-------------------------------------------------~ls~~~~~~l~~~m~~~~~~~~ 232 (266)
T 1alq_A 202 TLNKLIANG-------------------------------------------------KLSKENKKFLLDLMLNNKSGDT 232 (266)
T ss_dssp HHHHHTTSS-------------------------------------------------SCCHHHHHHHHHHHHTCGGGTT
T ss_pred HHHHHHHCC-------------------------------------------------CCCHHHHHHHHHHHHCCCCCCC
T ss_conf 999998578-------------------------------------------------7899999999999963964430
Q ss_pred EEHHCC-CCCCEEEEECCCCCC
Q ss_conf 432105-996046760467897
Q gi|254780752|r 667 ATGKVR-LNRPVAGKTGTTSSY 687 (817)
Q Consensus 667 g~~a~~-~~~~iaGKTGTt~~~ 687 (817)
.-++.. .++.|++||||+..+
T Consensus 233 ~l~~~lP~~~~Va~KTGt~~~~ 254 (266)
T 1alq_A 233 LIKDGVPKDYKVADKSGQAITY 254 (266)
T ss_dssp THHHHSCTTCEEEEEEEECSST
T ss_pred HHHHCCCCCCEEEEEECCCCCC
T ss_conf 0554399998899965057767