HHsearch results for GI: 254780752 and protein with PDBid: 1tvf_A
>1tvf_A PBP4, penicillin binding protein 4; structural genomics, nysgxrc target, SAV0642, PSI, protein structure initiative; 2.00A {Staphylococcus aureus} SCOP: b.105.1.2 e.3.1.1
Probab=94.35 E-value=0.0076 Score=36.28 Aligned_cols=110 Identities=18% Similarity=0.216 Sum_probs=62.6
Q ss_pred EEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH---CC-CCCCCCCCCCEEEEECCCCEEEEEE
Q ss_conf 6640656666117872132344433200123356653100001278874---02-4665445652378803785266641
Q gi|254780752|r 443 LIAMDPRTGRILATIGGFSYSQSEFNRSTQAMRQPGSCFKPIVYAAALD---SG-YTPASVIMDAPIEVVSRGKIWKPEN 518 (817)
Q Consensus 443 ~V~id~~TG~IlA~vGg~d~~~~~~NrA~~~~rqpGSt~KP~vy~~Ale---~G-~tp~t~~~D~p~~~~~~~~~~~p~N 518 (817)
.++||..||+||.=- | ...+++|+|+-|.++...+|| +| +++.+.+.-++..+... ..+...+
T Consensus 37 ~~vv~~~TG~iLy~K----------N--~d~~~~pAS~TKlMTa~l~le~~~~g~l~ld~~vtis~~~~~~~-~~~~~S~ 103 (369)
T 1tvf_A 37 SAVNVSQTGQLLYQY----------N--IDTKWNPASMTKLMTMYLTLEAVNKGQLSLDDTVTMTNKEYIMS-TLPELSN 103 (369)
T ss_dssp EEEEEETTSBEEEEE----------S--TTCCBCCGGGHHHHHHHHHHHHHHTTSSCTTCEEECCHHHHHHT-TCTTSCC
T ss_pred EEEEECCCCCEEEEE----------C--CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEECHHHHHHC-CCCCCCC
T ss_conf 699997899294267----------8--09982878999999999999988638988344713579999734-5877761
Q ss_pred CCCCCCC-HHHHHH----HHHHHCCHHHHHHHHHCCCC------EEEEEECCCCCCCCC
Q ss_conf 2765442-256666----66530440225887625972------352110135565556
Q gi|254780752|r 519 YSKNFSG-ASTLRF----GLEKSRNLMTVRLAHNMGMT------VVADYAENFGIYDKM 566 (817)
Q Consensus 519 ~~~~~~G-~itl~~----Al~~S~N~~~v~l~~~~G~~------~~~~~~~~~Gi~~~~ 566 (817)
. +-..| .+|+++ .|..|.|-.++-|++.++-. .+-+.|+++|+.+-.
T Consensus 104 ~-~l~~G~~~tv~dLL~~~li~SaNdAA~aLAe~i~Gs~~~Fv~~MN~kAkeLGm~~T~ 161 (369)
T 1tvf_A 104 T-KLYPGQVWTIADLLQITVSNSSNAAALILAKKVSKNTSDFVDLMNNKAKAIGMKNTH 161 (369)
T ss_dssp C-CCCTTCEEEHHHHHHHHHHSCCHHHHHHHHHHHSSSHHHHHHHHHHHHHHTTCTTCB
T ss_pred E-EECCCCEEEHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCE
T ss_conf 2-443897975999999876447778999999870477799999999999984889875