HHsearch results for GI: 254780752 and protein with PDBid: 3d0f_A
>3d0f_A Penicillin-binding 1 transmembrane protein MRCA; BIG_1156.2, structural genomics, PSI-2, protein structure initiative; 1.64A {Nitrosomonas europaea atcc 19718}
Probab=98.09 E-value=2.8e-06 Score=59.09 Aligned_cols=102 Identities=19% Similarity=0.283 Sum_probs=69.4
Q ss_pred HHHHHCCHHCCCCHHHHHHHHHH---HHHHCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCEECCCCCCCCCHHHHHHH
Q ss_conf 43210000001211248877863---332013355541047652144026765203344310000244423488896652
Q gi|254780752|r 323 NDGFRGPIKRIDLKKDWGNTLAS---IPTLYDVPEWDIAVVLEVSNSHITIGIRPTIDSNGKVTTERKKGIIEADSMRWV 399 (817)
Q Consensus 323 ~~g~rg~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (817)
.||||||+.+++...+......- ...+.....+..+.|+++....+...+. ......+..+.++|+
T Consensus 1 ~HGyRGP~~~i~~~~~~~~~e~~~~~L~~~~~~~~l~pAvV~~v~~~~~~v~~~-----------~g~~~~i~~~~~~Wa 69 (106)
T 3d0f_A 1 SNAYRGPEAFLKLPKDLKDREALQDIMQDIGNSDDILAAVVLSATPGAVEAFRK-----------NGETIRITGDGLKAA 69 (106)
T ss_dssp -CCCCCCSEECCCCSCTTCHHHHHHHTTTSCTTTTCEEEEEEEEETTEEEEEET-----------TSCEEEECGGGGSTT
T ss_pred CCCCCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEEEEECCCEEEEEEC-----------CCCEEEECHHHHHHH
T ss_conf 976788032057877743289999999708875780579999955878999967-----------996699708998877
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCEEEEEECC
Q ss_conf 0011223332100001364631012356-6515775225
Q gi|254780752|r 400 YNKEQTTEETSENRNVLSLGDVIYVEHI-NEGWRLRQIP 437 (817)
Q Consensus 400 ~~~~~~~~~~~~~~~~l~~gd~i~i~~~-~~~~~l~~~p 437 (817)
+..-. .......++++.||+||+... +..|+|+|+|
T Consensus 70 r~~~~--~~~k~~~~~l~~GDvI~V~~~~~~~w~L~QiP 106 (106)
T 3d0f_A 70 HRFLS--NDPKIGEKRIRPGALIRVKKTEKGSWQIVQLP 106 (106)
T ss_dssp GGGTT--TCTTTGGGSCCTTEEEEEEECTTSCEEEECCC
T ss_pred HHHCC--CCCCCHHHCCCCCCEEEEEECCCCCEEEEECC
T ss_conf 76504--35555543367798999999899968478279