HHsearch results for GI: 254780752 and protein with PDBid: 3d0f_A

>3d0f_A Penicillin-binding 1 transmembrane protein MRCA; BIG_1156.2, structural genomics, PSI-2, protein structure initiative; 1.64A {Nitrosomonas europaea atcc 19718}
Probab=98.09  E-value=2.8e-06  Score=59.09  Aligned_cols=102  Identities=19%  Similarity=0.283  Sum_probs=69.4

Q ss_pred             HHHHHCCHHCCCCHHHHHHHHHH---HHHHCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCEECCCCCCCCCHHHHHHH
Q ss_conf             43210000001211248877863---332013355541047652144026765203344310000244423488896652
Q gi|254780752|r  323 NDGFRGPIKRIDLKKDWGNTLAS---IPTLYDVPEWDIAVVLEVSNSHITIGIRPTIDSNGKVTTERKKGIIEADSMRWV  399 (817)
Q Consensus       323 ~~g~rg~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  399 (817)
                      .||||||+.+++...+......-   ...+.....+..+.|+++....+...+.           ......+..+.++|+
T Consensus         1 ~HGyRGP~~~i~~~~~~~~~e~~~~~L~~~~~~~~l~pAvV~~v~~~~~~v~~~-----------~g~~~~i~~~~~~Wa   69 (106)
T 3d0f_A            1 SNAYRGPEAFLKLPKDLKDREALQDIMQDIGNSDDILAAVVLSATPGAVEAFRK-----------NGETIRITGDGLKAA   69 (106)
T ss_dssp             -CCCCCCSEECCCCSCTTCHHHHHHHTTTSCTTTTCEEEEEEEEETTEEEEEET-----------TSCEEEECGGGGSTT
T ss_pred             CCCCCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEEEEECCCEEEEEEC-----------CCCEEEECHHHHHHH
T ss_conf             976788032057877743289999999708875780579999955878999967-----------996699708998877


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCEEEEEECC
Q ss_conf             0011223332100001364631012356-6515775225
Q gi|254780752|r  400 YNKEQTTEETSENRNVLSLGDVIYVEHI-NEGWRLRQIP  437 (817)
Q Consensus       400 ~~~~~~~~~~~~~~~~l~~gd~i~i~~~-~~~~~l~~~p  437 (817)
                      +..-.  .......++++.||+||+... +..|+|+|+|
T Consensus        70 r~~~~--~~~k~~~~~l~~GDvI~V~~~~~~~w~L~QiP  106 (106)
T 3d0f_A           70 HRFLS--NDPKIGEKRIRPGALIRVKKTEKGSWQIVQLP  106 (106)
T ss_dssp             GGGTT--TCTTTGGGSCCTTEEEEEEECTTSCEEEECCC
T ss_pred             HHHCC--CCCCCHHHCCCCCCEEEEEECCCCCEEEEECC
T ss_conf             76504--35555543367798999999899968478279