PSIBLAST alignment of GI: 254780752 and protein with PDB id: 2c5w
>gi|85544361|pdb|2C5W|B Chain B, Penicillin-Binding Protein 1a (Pbp-1a) Acyl-Enzyme Complex (Cefotaxime) From Streptococcus Pneumoniae Length = 385
Score = 139 bits (349), Expect = 2e-30, Method: Composition-based stats.
Identities = 75/359 (20%), Positives = 137/359 (38%), Gaps = 55/359 (15%)
Query: 422 IYVEHINEGWRLRQIPKVQGGLIAMDPRTGRILATIGGFSYSQSE---FNRSTQAMRQPG 478
++ + + + ++Q +D G+++A +G S + N++ + R G
Sbjct: 45 LWDIYNTDEYVAYPDDELQVASTIVDVSNGKVIAQLGARHQSSNVSFGINQAVETNRDWG 104
Query: 479 SCFKPIVYA-AALDSG--YTPASVIMDAPIEVVSRGKIWKPENYSKNFSGASTLRFGLEK 535
S KPI AL+ G + A+++ D P N+ + + G TL++ L++
Sbjct: 105 STMKPITDYAPALEYGVYESTATIVHDEPYNYPGTNTP--VYNWDRGYFGNITLQYALQQ 162
Query: 536 SRNLMTVRLAHNMGMTVVADYAENFGIYDKMLPVLPMSLGAGETTVLR--------MVSA 587
SRN+ V + +G+ + GI + ++ + T + M +A
Sbjct: 163 SRNVPAVETLNKVGLNRAKTFLNGLGIDYPSIHY-SNAISSNTTESDKKYGASSEKMAAA 221
Query: 588 YAVFANGGKQIRPSFIDRIQNRYGKTIFNQEQRICDDCNYDTWNGQDEPEIIDKREQVLD 647
YA FANGG +P +I ++ G E E + + +
Sbjct: 222 YAAFANGGTYYKPMYIHKVVFSDG----------------------SEKEFSNVGTRAMK 259
Query: 648 PMTAYQITSMLEGVIKHGTATGKVRLNRPVAGKTGTTS------SYR---------DTWF 692
TAY +T M++ V+ +GT P AGKTGT++ D F
Sbjct: 260 ETTAYMMTDMMKTVLTYGTGRNAYLAWLPQAGKTGTSNYTDEEIENHIKTSQFVAPDELF 319
Query: 693 IGYTPTLVVGVYVGYDIPAPLNNHATGSTLTAPIFNAFMKEALKNIPSSRFVAPPGMSL 751
GYT + V+ GY G T+ A ++ + M + + P G+
Sbjct: 320 AGYTRKYSMAVWTGY-SNRLTPLVGNGLTVAAKVYRSMMTYLSEGSNPEDWNIPEGLYR 377