RPSBLAST alignment for GI: 254780752 and conserved domain: TIGR03423

>gnl|CDD|163256 TIGR03423, pbp2_mrdA, penicillin-binding protein 2. Members of this protein family are penicillin-binding protein 2 (PBP-2), a protein whose gene (designated pbpA or mrdA) generally is found next to the gene for RodA, a protein required for rod (bacillus) shape in many bacteria. PBP-2 acts as a transpeptidase for cell elongation (hence, rod-shape). Length = 592
 Score =  106 bits (268), Expect = 2e-23
 Identities = 91/376 (24%), Positives = 134/376 (35%), Gaps = 115/376 (30%)

Query: 441 GGLIAMDPRTGRILAT-----------IGGFSYSQ----------SEFNRSTQAMRQPGS 479
           G ++ MDPRTG ILA            + G S                NR+ Q +  PGS
Sbjct: 249 GAVVVMDPRTGEILAMVSTPSFDPNLFVDGISSKDWKALLNDPDRPLLNRAIQGVYPPGS 308

Query: 480 CFKPIVYAAALDSGYTPASVIMDAPIEVVSRGKI---WKPENYSKNFSGASTLRFGLEKS 536
            FKP V  AAL+ G       +  P      G+    WK   +     G   LR  +E+S
Sbjct: 309 TFKPFVALAALEEGVITPETRIYCPGYFQLGGRRFRCWKRGGH-----GRVDLRKAIEES 363

Query: 537 RNLMTVRLAHNMGMTVVADYAENFGIYDK-----------MLP----------------- 568
            ++   +LA  +G+  +A+YA+ FG   K           ++P                 
Sbjct: 364 CDVYFYQLALRLGIDKIAEYAKKFGFGQKTGIDLPGEKSGLVPSREWKRKRFGQPWYPGD 423

Query: 569 VLPMSLGAGETTV--LRMVSAYAVFANGGKQIRPSFIDRIQNRYGKTIFNQEQRICDDCN 626
            L +S+G G   V  L++  A A  ANGGK  +P  +  I++  G  +            
Sbjct: 424 TLNVSIGQGYVLVTPLQLAVATAALANGGKLYKPHLVKSIEDPDGGVVQ----------- 472

Query: 627 YDTWNGQDEPEIIDKREQVLDPMTAYQITSMLEGVIKH--GTATGKVRLNRPV--AGKTG 682
                 + EPE++      + P     +   +  V+    GTA  + RL  P   AGKTG
Sbjct: 473 ------ETEPEVLRPL--PISPENLDVVREGMRDVVNEPGGTA-RRARLGLPYKMAGKTG 523

Query: 683 T-----------------TSSYRDT-WFIGYTP----TLVVGVYVGYDIPAPLNNHA-TG 719
           T                     RD   F+ + P     + V V         +  H   G
Sbjct: 524 TAQVVSLKQGEKYDAEQIPERLRDHALFVAFAPYDNPKIAVAV---------IVEHGGGG 574

Query: 720 STLTAPIFNAFMKEAL 735
           S+  API    M    
Sbjct: 575 SSAAAPIARKIMDAYF 590