RPSBLAST alignment for GI: 254780752 and conserved domain: TIGR03423
>gnl|CDD|163256 TIGR03423, pbp2_mrdA, penicillin-binding protein 2. Members of this protein family are penicillin-binding protein 2 (PBP-2), a protein whose gene (designated pbpA or mrdA) generally is found next to the gene for RodA, a protein required for rod (bacillus) shape in many bacteria. PBP-2 acts as a transpeptidase for cell elongation (hence, rod-shape). Length = 592
Score = 106 bits (268), Expect = 2e-23
Identities = 91/376 (24%), Positives = 134/376 (35%), Gaps = 115/376 (30%)
Query: 441 GGLIAMDPRTGRILAT-----------IGGFSYSQ----------SEFNRSTQAMRQPGS 479
G ++ MDPRTG ILA + G S NR+ Q + PGS
Sbjct: 249 GAVVVMDPRTGEILAMVSTPSFDPNLFVDGISSKDWKALLNDPDRPLLNRAIQGVYPPGS 308
Query: 480 CFKPIVYAAALDSGYTPASVIMDAPIEVVSRGKI---WKPENYSKNFSGASTLRFGLEKS 536
FKP V AAL+ G + P G+ WK + G LR +E+S
Sbjct: 309 TFKPFVALAALEEGVITPETRIYCPGYFQLGGRRFRCWKRGGH-----GRVDLRKAIEES 363
Query: 537 RNLMTVRLAHNMGMTVVADYAENFGIYDK-----------MLP----------------- 568
++ +LA +G+ +A+YA+ FG K ++P
Sbjct: 364 CDVYFYQLALRLGIDKIAEYAKKFGFGQKTGIDLPGEKSGLVPSREWKRKRFGQPWYPGD 423
Query: 569 VLPMSLGAGETTV--LRMVSAYAVFANGGKQIRPSFIDRIQNRYGKTIFNQEQRICDDCN 626
L +S+G G V L++ A A ANGGK +P + I++ G +
Sbjct: 424 TLNVSIGQGYVLVTPLQLAVATAALANGGKLYKPHLVKSIEDPDGGVVQ----------- 472
Query: 627 YDTWNGQDEPEIIDKREQVLDPMTAYQITSMLEGVIKH--GTATGKVRLNRPV--AGKTG 682
+ EPE++ + P + + V+ GTA + RL P AGKTG
Sbjct: 473 ------ETEPEVLRPL--PISPENLDVVREGMRDVVNEPGGTA-RRARLGLPYKMAGKTG 523
Query: 683 T-----------------TSSYRDT-WFIGYTP----TLVVGVYVGYDIPAPLNNHA-TG 719
T RD F+ + P + V V + H G
Sbjct: 524 TAQVVSLKQGEKYDAEQIPERLRDHALFVAFAPYDNPKIAVAV---------IVEHGGGG 574
Query: 720 STLTAPIFNAFMKEAL 735
S+ API M
Sbjct: 575 SSAAAPIARKIMDAYF 590