RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780752|ref|YP_003065165.1| penicillin binding peptidoglycan synthetase protein [Candidatus Liberibacter asiaticus str. psy62] (817 letters) >gnl|CDD|183248 PRK11636, mrcA, penicillin-binding protein 1a; Provisional. Length = 850 Score = 475 bits (1224), Expect = e-134 Identities = 281/864 (32%), Positives = 440/864 (50%), Gaps = 121/864 (14%) Query: 6 VSFIGYFFGFATYSILGAILGA-SIY--IAKISQNLPDYAALNSYSPAVTTRIHAGNGAL 62 + F+ Y A IL LGA SIY I LPD A L ++++ +G L Sbjct: 1 MKFVKYLLILAVCCIL---LGAGSIYGLYRYIEPQLPDVATLKDVRLQTPMQVYSADGEL 57 Query: 63 MAEYARENRLFLPIQIIPSHVKYAFVSAEDKNFYYHSGVDIFGIMRAVLHNIRNISHGRR 122 +A+Y + R+ L + IP + AF++ ED FY H GVD GI RA + G Sbjct: 58 IAQYGEKRRIPLTLDQIPPEMVKAFIATEDSRFYEHHGVDPVGIFRAA---SVALFSGHA 114 Query: 123 PEGASTITQQVAKNFLLTSNQTMDRKIKEILLSFRLEKAYDKEKILEFYLNEIFFGFNSY 182 +GASTITQQ+A+NF L+ +T+ RKIKE L+ R+E+ K++ILE YLN+I+ G+ +Y Sbjct: 115 SQGASTITQQLARNFFLSPERTLMRKIKEAFLAIRIEQLLTKDEILELYLNKIYLGYRAY 174 Query: 183 GIASAALTYFNKSVSELTIEEAAYLAALPKGPSNYDPFRKNKAAIARRNWVIDRMEENGY 242 G+ +AA YF K+V +LT+ E A +A LPK PS ++P A+ARRN V+ RM + GY Sbjct: 175 GVGAAAQVYFGKTVDQLTLSEMAVIAGLPKAPSTFNPLYSMDRAVARRNVVLSRMLDEGY 234 Query: 243 ISQEQALVAKQKPLKITIKQRRSH----LFGSEYFAEEVRRQLIDRYGEKALYEDGLSIR 298 I+Q Q A+ +P+ H F + Y +E VR+++ +RYGE A YEDG + Sbjct: 235 ITQAQYDQARSEPI-----VANYHAPEIAFSAPYLSEMVRQEMYNRYGENA-YEDGYRVY 288 Query: 299 TSLDPQLQLYARKALQNGLINYDQNDGFRGPIKRI--------DLKKDWGNTLASIPTLY 350 T++ ++Q A++A++N +++YD G+RGP + D KK +TL ++PT Y Sbjct: 289 TTITRKVQQAAQQAVRNNVLDYDMRHGYRGPANVLWKVGESAWDNKK-ITDTLKALPT-Y 346 Query: 351 D--VPEWDIAVVLEVSNSHITIGIRPTIDSNGKVTTERKKGIIEADSMRWVYNKEQTTEE 408 +P AVV + T + V + + +RW T++ Sbjct: 347 GPLLP----AVVTSANPQEATA----MLADGSSVA-------LPMEGVRWARPYRSDTQQ 391 Query: 409 TSENR---NVLSLGDVIYVEHINEGWRLRQIPKVQGGLIAMDPRTGRILATIGGFSYSQS 465 R +V+ G I+V +++ W L Q+P V L++++P+ G ++A +GGF ++QS Sbjct: 392 GPTPRKVTDVVQTGQQIWVRQVDDAWWLAQVPDVNSALVSINPQNGAVMALVGGFDFNQS 451 Query: 466 EFNRSTQAMRQPGSCFKPIVYAAALDSGYTPASVIMDAPIEVVSR-----GKIWKPENYS 520 +FNR+TQA+RQ GS KP +Y AA+D G T AS++ D PI SR G W+P+N Sbjct: 452 KFNRATQALRQVGSNIKPFLYTAAMDKGLTLASMLNDVPI---SRWDAGAGSDWRPKNSP 508 Query: 521 KNFSGASTLRFGLEKSRNLMTVRLAHNMGMTVVADYAENFGIYDK-MLPVLPMSLGAGET 579 ++G LR GL +S+N++ VR MG+ A+Y + FG + ++ ++LG+ Sbjct: 509 PQYAGPIRLRQGLGQSKNVVMVRAMRAMGVDYAAEYLQRFGFPAQNIVHTESLALGSASF 568 Query: 580 TVLRMVSAYAVFANGGKQIRPSFIDRIQNRYGKTIFNQEQRI-CDDCNYDTWNGQDEPEI 638 T +++ YAV ANGG + P FI +I+N G IF + ++ C +C+ G + Sbjct: 569 TPMQVARGYAVMANGGFLVDPYFISKIENDQGGVIFEAKPKVACPECDIPVIYGDTQKSN 628 Query: 639 I---DKREQV---------------LDPMTAYQ-------------ITSMLEGVIKH--- 664 + D E V L+ I + L +IK Sbjct: 629 VLENDDVENVATSQEQQNSSVPMPQLEQANQALVAQNGAQEYAPHVINTPLAFLIKSALN 688 Query: 665 ----------GTA--TGKVRLNRPVAGKTGTTSSYRDTWFIGYTPTLVVGVYVGYD---- 708 GT G+ R + GKTGTT+S +D WF GY P +V V++G+D Sbjct: 689 TNIFGEPGWMGTGWRAGRDLKRRDIGGKTGTTNSSKDAWFSGYGPGVVTSVWIGFDDHRR 748 Query: 709 ----------IPAPLNNHATGSTLTAPIFNAFMKEALKNIPSSRFVAPPGMSLIPINKWT 758 I ++ + G+ P ++ +MK AL+ +P PPG+ + I++ T Sbjct: 749 DLGRTTASGAIKDQISGYEGGAKSAQPAWDDYMKAALEGVPEQPLTPPPGIVTVNIDRST 808 Query: 759 GMLSKKGDPDTIIEAFKPGTGPAE 782 G L+ G ++ E F GT P + Sbjct: 809 GKLANGG--NSREEYFIEGTQPTQ 830 >gnl|CDD|162686 TIGR02074, PBP_1a_fam, penicillin-binding protein, 1A family. Bacterial that synthesize a cell wall of peptidoglycan (murein) generally have several transglycosylases and transpeptidases for the task. This family consists of bifunctional transglycosylase/transpeptidase penicillin-binding proteins (PBP). In the Proteobacteria, this family includes PBP 1A but not the paralogous PBP 1B (TIGR02071). This family also includes related proteins, often designated PBP 1A, from other bacterial lineages. Length = 530 Score = 333 bits (857), Expect = 9e-92 Identities = 138/299 (46%), Positives = 176/299 (58%), Gaps = 23/299 (7%) Query: 439 VQGGLIAMDPRTGRILATIGGFSYSQSEFNRSTQAMRQPGSCFKPIVYAAALDSGYTPAS 498 +Q L+A+DP TG + A +GG Y +S+FNR+TQA RQPGS FKP VYAAAL+ G+TPAS Sbjct: 255 LQAALVAIDPDTGAVRALVGGRDYGESQFNRATQAKRQPGSTFKPFVYAAALEKGWTPAS 314 Query: 499 VIMDAPIEVVSRGKIWKPENYSKNFSGASTLRFGLEKSRNLMTVRLAHNMGMTVVADYAE 558 ++ D PI + W P+NY + G TLR L +SRN+ VRL +G+ V A+ Sbjct: 315 IVDDEPITYSNGP--WSPKNYGGGYRGNVTLRQALAQSRNIPAVRLLDEVGLNKVVALAK 372 Query: 559 NFGIYDKMLPVLPMSLGAGETTVLRMVSAYAVFANGGKQIRPSFIDRIQNRYGKTIFNQE 618 FGI + PVL ++LG E + L M SAYAVFANGGK + P I +I +R GK I+ + Sbjct: 373 RFGITSPLPPVLSLALGTVEVSPLEMASAYAVFANGGKYVEPHGIRKIVDRDGKVIYENK 432 Query: 619 QRICDDCNYDTWNGQDEPEIIDKREQVLDPMTAYQITSMLEGVIKHGTATGKVRLNRPVA 678 QV+ P TAY +T ML+GV++ GT RPVA Sbjct: 433 P---------------------TTTQVISPATAYIMTDMLKGVVESGTGRSARLPGRPVA 471 Query: 679 GKTGTTSSYRDTWFIGYTPTLVVGVYVGYDIPAPLNNHATGSTLTAPIFNAFMKEALKN 737 GKTGTT + RD WF+GYTP V V+VGYD L TG L API+ FM EALKN Sbjct: 472 GKTGTTQNSRDAWFVGYTPYYVTAVWVGYDDKKTLGKSGTGGGLAAPIWRDFMAEALKN 530 Score = 297 bits (763), Expect = 6e-81 Identities = 115/258 (44%), Positives = 163/258 (63%), Gaps = 4/258 (1%) Query: 70 NRLFLPIQIIPSHVKYAFVSAEDKNFYYHSGVDIFGIMRAVLHNIRNISHGRRPEGASTI 129 R ++PI IP ++ AF++ ED+ FY H G+D+ GI RA + NI+ G EG STI Sbjct: 1 RREYVPIDDIPENLINAFLAIEDRRFYDHFGIDLKGIGRAAV---NNITSGGVLEGGSTI 57 Query: 130 TQQVAKNFLLTSNQTMDRKIKEILLSFRLEKAYDKEKILEFYLNEIFFGFNSYGIASAAL 189 TQQ+AKN LT+ +T+ RKI+E LL+ +LE+ K++ILE YLN I+FG +YGI +AA Sbjct: 58 TQQLAKNLYLTNERTITRKIQEALLALKLEQKLSKDEILELYLNRIYFGNGAYGIEAAAQ 117 Query: 190 TYFNKSVSELTIEEAAYLAALPKGPSNYDPFRKNKAAIARRNWVIDRMEENGYISQEQAL 249 YF KSV++LT+ EAA LA LPK PS Y+PF + A RRN V+ M ENGYI+ E+A Sbjct: 118 FYFGKSVNDLTLAEAAMLAGLPKAPSAYNPFVNPERAKDRRNLVLSNMVENGYITAEEAE 177 Query: 250 VAKQKPLKITIKQRRSHLFGSEYFAEEVRRQLIDRYGEKALYEDGLSIRTSLDPQLQLYA 309 A +P+++ ++ + + + YF + V ++L + YGE LY GL I T+LD +Q A Sbjct: 178 EAINEPIQLYLQTKTAEEYKYPYFVDYVIQELEEEYGE-ELYTGGLKIYTTLDLDMQKAA 236 Query: 310 RKALQNGLINYDQNDGFR 327 K L NGL + Sbjct: 237 EKVLNNGLREAGRRANDD 254 >gnl|CDD|162683 TIGR02071, PBP_1b, penicillin-binding protein 1B. Bacterial that synthesize a cell wall of peptidoglycan (murein) generally have several transglycosylases and transpeptidases for the task. This family consists of a particular bifunctional transglycosylase/transpeptidase in E. coli and other Proteobacteria, designated penicillin-binding protein 1B. Length = 730 Score = 206 bits (525), Expect = 3e-53 Identities = 86/253 (33%), Positives = 140/253 (55%), Gaps = 9/253 (3%) Query: 69 ENRLFLPIQIIPSHVKYAFVSAEDKNFYYHSGVDIFGIMRAVLHNIRNISHGRRPEGAST 128 E RLF+P P + ++ ED++FY H G+ ++ I RAV N+ GR +G ST Sbjct: 145 EQRLFVPRDQFPELLVDTLLATEDRDFYEHDGISLYSIGRAVWVNLTA---GRTVQGGST 201 Query: 129 ITQQVAKNFLLTSNQTMDRKIKEILLSFRLEKAYDKEKILEFYLNEIFFGFNS----YGI 184 +TQQ+ KN L++ +++ RK E ++ L+ Y K++ILE YLNE++ G + +G Sbjct: 202 LTQQLVKNLFLSNERSLWRKANEAYMALILDARYSKDRILELYLNEVYLGQSGDDAIHGF 261 Query: 185 ASAALTYFNKSVSELTIEEAAYLAALPKGPSNYDPFRKNKAAIARRNWVIDRMEENGYIS 244 A+ YF + + EL++++ A L + KGPS Y+P+R A+ RRN V+ ++E I Sbjct: 262 PLASQYYFGRPLGELSLDQVALLVGMVKGPSYYNPWRNPDRALERRNLVLRLLQEQKIID 321 Query: 245 QEQALVAKQKPLKITIKQRRSHLFGSEYFAEEVRRQLIDRYGEKALYEDGLSIRTSLDPQ 304 E+ + +PL + K + F + VRR+L + G+K GL I T+LDP Sbjct: 322 DEEYDMLSARPLGVQKKGGIISRQPA--FLQLVRRELRQKLGDKVKDLSGLRIFTTLDPV 379 Query: 305 LQLYARKALQNGL 317 Q A +A+Q + Sbjct: 380 SQSAAEQAVQETI 392 Score = 162 bits (413), Expect = 3e-40 Identities = 94/346 (27%), Positives = 154/346 (44%), Gaps = 39/346 (11%) Query: 432 RLRQIPKVQGGLIAMDPRTGRILATIGGFSYSQSEFNRSTQAMRQPGSCFKPIVYAAALD 491 + +++P ++ ++ D TG + A +GG + FNR+ QA RQ GS KP VY AL Sbjct: 397 KKKKLPDLEAAMVVTDRFTGEVRAMVGGSDPQFAGFNRALQARRQIGSLVKPAVYLTALS 456 Query: 492 S--GYTPASVIMDAPIEV-VSRGKIWKPENYSKNFSGASTLRFGLEKSRNLMTVRLAHNM 548 Y + I D P+ + +S G++W P+NY + +SG L L S N+ TV L + Sbjct: 457 QPDKYRLNTWIEDQPLSIKLSNGQVWSPQNYDRRYSGTVMLYDALAHSLNIPTVNLGMKV 516 Query: 549 GMTVVADYAENFGIYDKMLPVLP-MSLGAGETTVLRMVSAYAVFANGGKQIRPSFIDRIQ 607 G+ V+ GI +P +P M LGA T + Y A+GG + S + + Sbjct: 517 GLPKVSQTWNKLGINKDEIPPVPSMLLGAINLTPYEVAQLYQTIASGGNRAPLSAVRSVL 576 Query: 608 NRYGKTIFNQEQRICDDCNYDTWNGQDEPEIIDKREQVLDPMTAYQITSMLEGVIKHGTA 667 + GK ++ Q +P+ EQ + AY ++ V++ GTA Sbjct: 577 DEDGKVLY-----------------QSDPQA----EQAVPSQAAYLTLYAMQQVVQRGTA 615 Query: 668 --TGKVRLNRPVAGKTGTTSSYRDTWFIGYTPTLVVGVYVGYDIPAPLNNHAT---GSTL 722 G + +AGKTGTT+ RD+WF G V +++G D +N T G++ Sbjct: 616 RSLGADFPSLSLAGKTGTTNDNRDSWFAGIDGKEVTIIWLGRD-----DNGPTKLTGASG 670 Query: 723 TAPIFNAFMKEALKNIPSSRFVAPP-GMSLIPINKWTGMLSKKGDP 767 ++ ++ P + PP G+ ++ K P Sbjct: 671 ALQVYARYLS---YQTPEPLLLVPPEGIDWFGVDPQGNGGCKANCP 713 >gnl|CDD|162685 TIGR02073, PBP_1c, penicillin-binding protein 1C. This subfamily of the penicillin binding proteins includes the member from E. coli designated penicillin-binding protein 1C. Members have both transglycosylase and transpeptidase domains and are involved in forming cross-links in the late stages of peptidoglycan biosynthesis. All members of this subfamily are presumed to have the same basic function. Length = 727 Score = 176 bits (449), Expect = 2e-44 Identities = 88/272 (32%), Positives = 136/272 (50%), Gaps = 22/272 (8%) Query: 47 YSPAVTTRIHAGNGALMAEYA---RENRLFLPIQIIPSHVKYAFVSAEDKNFYYHSGVDI 103 S V R +G L+ + RL +P++ I A + EDK FY+H GV+ Sbjct: 10 SSTVVLDR----HGTLLRALLANDGQWRLPVPLEDISPKFLQALLLYEDKRFYWHPGVNP 65 Query: 104 FGIMRAVLHNIRNISHGRRPEGASTITQQVAKNFLLTSNQTMDRKIKEILLSFRLEKAYD 163 ++RA +N+++GRR G ST+T Q+A+ ++T+ K++++ + +LE Y Sbjct: 66 LALLRAAW---QNLTNGRRVSGGSTLTMQLARLLDPELSRTLTGKLRQMWRAIQLEARYS 122 Query: 164 KEKILEFYLNEIFFGFNSYGIASAALTYFNKSVSELTIEEAAYLAALPKGPSNYDPFRKN 223 K +ILE YLN +G N G+ +A+L YF K S L++ EAA LAALP+ PS R Sbjct: 123 KREILEAYLNLAPYGGNLEGLRAASLIYFGKEPSSLSLAEAALLAALPQAPSARRLDRLP 182 Query: 224 KAAIARRNWVIDRMEENGYISQEQALVAKQKPLKITIKQRRSHLFGSEYFAEEVRRQLID 283 KAA A R+ ++DRM E G EQ +A +PL + +FA ++ R Sbjct: 183 KAAKAARDRLLDRMVEQGPDDSEQVALAALEPL---PALPEPLPQLAPHFALKLLRA--- 236 Query: 284 RYGEKALYEDGLSIRTSLDPQLQLYARKALQN 315 E A I ++LD LQ + + Sbjct: 237 -RPEIA-----SVIVSTLDADLQRRLEELARR 262 Score = 155 bits (393), Expect = 4e-38 Identities = 98/391 (25%), Positives = 149/391 (38%), Gaps = 56/391 (14%) Query: 432 RLRQIPKVQGGLIAMDPRTGRILATIGGFSYSQSEFNRS-------TQAMRQPGSCFKPI 484 LR ++ +D R+G +LA +G S F+ S +A R PGS KP Sbjct: 266 ALRPRGISNLAILVVDNRSGAVLAYVG----SADFFDDSNSGQVDGVRAPRSPGSTLKPF 321 Query: 485 VYAAALDSGY-TPASVIMDAPIEVVSRGKIWKPENYSKNFSGASTLRFGLEKSRNLMTVR 543 +YA ALD G P S++ D P+ + PEN+ K F G R L +S N+ VR Sbjct: 322 LYALALDDGLLHPDSLLKDVPLRFGD----YAPENFDKTFHGPVPAREALARSLNIPAVR 377 Query: 544 LAHNMGMTVVADYAENFGIY----DKMLPVLPMSLGAGETTVLRMVSAYAVFANGGKQIR 599 L +G AD+ G+ L ++LG E T+ + + YA+ AN G Sbjct: 378 LLERVGPPRFADFLRQAGLNLLKPKSDYYGLSLALGGAEITLQDLANLYAMLANQGLSGP 437 Query: 600 PSFIDRIQNRYGKTIFNQEQRICDDCNYDTWNGQDEPEIIDKREQVLDPMTAYQITSMLE 659 F+ R +RE++L P A+ + +L+ Sbjct: 438 LRFLQTDAKR------------------------------PERERLLSPGAAWIVLDILK 467 Query: 660 GVIKHGTATGKVRLNR--PVAGKTGTTSSYRDTWFIGYTPTLVVGVYVGYDIPAPLNNHA 717 + L P+A KTGT+ +RD W G + +GV+VG P N Sbjct: 468 DRPRPDDTLPLSALPTRLPLAWKTGTSYGFRDAWAAGVSGRYTIGVWVGNFDGKP-NPGF 526 Query: 718 TGSTLTAPIFNAFMKEALKNIPSSRFVAPPGMSLIPINKWTGMLSKKGDPDTIIEAFKPG 777 G+ AP+ + + S+ P + +P G L P+ I F PG Sbjct: 527 FGAAAAAPLLFDILDALQASEASTL---PRPLKEVPGCLVLGNLPILPCPEQISTWFLPG 583 Query: 778 TGPAETYTVIDEDSNVSSEEILRRSPQANQA 808 P + +E I P +A Sbjct: 584 GSPPTLSEPHKPVVILINEGIAACLPDKPEA 614 >gnl|CDD|181917 PRK09506, mrcB, bifunctional glycosyl transferase/transpeptidase; Reviewed. Length = 830 Score = 158 bits (400), Expect = 7e-39 Identities = 90/273 (32%), Positives = 151/273 (55%), Gaps = 17/273 (6%) Query: 49 PAVTTRIHAGNGALMAEYARENRLFLPIQIIPSHVKYAFVSAEDKNFYYHSGVDIFGIMR 108 P + T + + NG E RLF+P P + ++ ED++FY H G+ ++ I R Sbjct: 197 PRLITMLQSPNG--------EQRLFVPRSGFPDLLVDTLLATEDRHFYEHDGISLYSIGR 248 Query: 109 AVLHNIRNISHGRRPEGASTITQQVAKNFLLTSNQTMDRKIKEILLSFRLEKAYDKEKIL 168 AVL N++ GR +G ST+TQQ+ KN L++ +++ RK E ++ ++ Y K++IL Sbjct: 249 AVL---ANLTAGRTVQGGSTLTQQLVKNLFLSNERSLWRKANEAYMALIMDARYSKDRIL 305 Query: 169 EFYLNEIFFGFNS----YGIASAALTYFNKSVSELTIEEAAYLAALPKGPSNYDPFRKNK 224 E YLNE++ G + G A+L YF + V EL++++ A L + KG S Y+P+R K Sbjct: 306 ELYLNEVYLGQSGDDQIRGFPLASLYYFGRPVEELSLDQQALLVGMVKGASLYNPWRNPK 365 Query: 225 AAIARRNWVIDRMEENGYISQEQALVAKQKPLKITIKQRRSHLFGSEYFAEEVRRQLIDR 284 A+ RRN V+ +++ I QE + +PL ++ + + F + VR++L + Sbjct: 366 LALERRNLVLRLLQQQQIIDQELYDMLSARPLG--VQPKGGVISPQPAFMQMVRQELQAK 423 Query: 285 YGEKALYEDGLSIRTSLDPQLQLYARKALQNGL 317 G+K G+ I T+LDP Q A KA++ G+ Sbjct: 424 LGDKVKDLSGVKIFTTLDPVSQDAAEKAVEEGI 456 Score = 121 bits (304), Expect = 1e-27 Identities = 86/336 (25%), Positives = 141/336 (41%), Gaps = 47/336 (13%) Query: 434 RQIPKVQGGLIAMDPRTGRILATIGGFSYSQSEFNRSTQAMRQPGSCFKPIVYAAALD-- 491 R++ ++ ++ +D +G + A +GG + +NR+ QA R GS KP Y AL Sbjct: 463 RKLSDLETAMVVVDRFSGEVRAMVGGSEPQFAGYNRAMQARRSIGSLAKPATYLTALSQP 522 Query: 492 SGYTPASVIMDAPIEV-VSRGKIWKPENYSKNFSGASTLRFGLEKSRNLMTVRLAHNMGM 550 Y + I DAPI + G++W P+N + FSG L L +S N+ TV L +G+ Sbjct: 523 DKYRLNTWIADAPISLRQPNGQVWSPQNDDRRFSGRVMLVDALTRSMNVPTVNLGMALGL 582 Query: 551 TVVADYAENFGIYDKMLPVLP-MSLGAGETTVLRMVSAYAVFANGGKQIRPSFIDRIQNR 609 V D G+ L +P M LGA T + + A+ A+GG + S + + Sbjct: 583 PAVTDTWIKLGVPKDQLNPVPAMLLGALNLTPIEVAQAFQTIASGGNRAPLSALRSVIAE 642 Query: 610 YGKTIFNQEQRICDDCNYDTWNGQDEPEIIDKREQVLDPMTAYQITSMLEGVIKHGTAT- 668 GK ++ Q P + E+ + AY ++ V++ GT Sbjct: 643 DGKVLY-----------------QSFP----QAERAVPAQAAYLTLYTMQQVVQRGTGRQ 681 Query: 669 -----GKVRLNRPVAGKTGTTSSYRDTWFIGYTPTLVVGVYVGYDIPAPLNNHATGSTLT 723 + L AGKTGTT+ D+WF G V +VG D P G++ Sbjct: 682 LGAKYPNLHL----AGKTGTTNDLVDSWFAGIDGKEVTITWVGRDNNQPTK--LYGASGA 735 Query: 724 APIFNAFMKE----ALKNIPSSRFVAPPGMSLIPIN 755 I+ +++ L P P + + ++ Sbjct: 736 MTIYQRYLENQTPTPLNLTP------PEDIVDMGVD 765 >gnl|CDD|184852 PRK14850, PRK14850, penicillin-binding protein 1b; Provisional. Length = 764 Score = 145 bits (367), Expect = 5e-35 Identities = 77/254 (30%), Positives = 133/254 (52%), Gaps = 11/254 (4%) Query: 69 ENRLFLPIQIIPSHVKYAFVSAEDKNFYYHSGVDIFGIMRAVLHNIRNISHGRRPEGAST 128 + RLF+P P + ++ EDK FY H G+ + I RA L N+ + G +G ST Sbjct: 155 KKRLFIPRNQYPEMLIKTLLAIEDKYFYEHDGIHLSSIGRAFLVNLMS---GHTIQGGST 211 Query: 129 ITQQVAKNFLLTSNQTMDRKIKEILLSFRLEKAYDKEKILEFYLNEIFFGFNS----YGI 184 +TQQ+ KN LT+ +++ RKI EI ++ L++ Y K++ILE YLNE++ G + G Sbjct: 212 LTQQLVKNLFLTNTRSLWRKINEIYMALILDRFYSKDRILELYLNEVYLGQDGNEQIRGF 271 Query: 185 ASAALTYFNKSVSELTIEEAAYLAALPKGPSNYDPFRKNKAAIARRNWVIDRMEENGYIS 244 A++ YF + ++EL +++ A L + KG S Y+P+ + RRN V+ + + I+ Sbjct: 272 PLASIYYFGRPINELNLDQYALLVGMVKGASLYNPWTNPNLTLKRRNLVLFLLYKQKVIT 331 Query: 245 QEQALVAKQKPLKITIKQRRSHLFGSE-YFAEEVRRQLIDRYGEKALYEDGLSIRTSLDP 303 ++ +PL + Q + ++ S F + V + + G I T+LD Sbjct: 332 RKLYKDLCSRPLNV---QSKGNIISSHPAFIQLVCEEFHKKIHYPFKNFSGTKIFTTLDY 388 Query: 304 QLQLYARKALQNGL 317 Q A +A++ G+ Sbjct: 389 ISQNAAEQAVKIGI 402 Score = 136 bits (343), Expect = 3e-32 Identities = 95/346 (27%), Positives = 156/346 (45%), Gaps = 40/346 (11%) Query: 432 RLRQIPKVQ---GGLIAMDPRTGRILATIGGFSYSQSEFNRSTQAMRQPGSCFKPIVYAA 488 L++ +++ ++ +D +G + A IG + +NR+ +A R GS KPI Y Sbjct: 404 ILKRKKRLKDLEVAMVIIDRFSGEVRALIGSSKPEFNGYNRALKARRSIGSLSKPITYLT 463 Query: 489 ALD--SGYTPASVIMDAPIEV-VSRGKIWKPENYSKNFSGASTLRFGLEKSRNLMTVRLA 545 AL Y + I D PI + + G+ W P+N + +FSG L L S N+ TV L+ Sbjct: 464 ALSQPEKYHLNTWISDTPISIKLDNGQYWTPKNNNFSFSGKVMLIDALIHSINIPTVHLS 523 Query: 546 HNMGMTVVADYAENFGIYDKMLPVLP-MSLGAGETTVLRMVSAYAVFANGGKQIRPSFID 604 N+G+ + D GI + LP +SLGA T + + + + +GG + S I Sbjct: 524 INLGLKKLVDSWILLGISSNYITPLPSISLGAINLTPMEVAQVFQIIGSGGYKSSLSSIR 583 Query: 605 RIQNRYGKTIFNQEQRICDDCNYDTWNGQDEPEIIDKREQVLDPMTAYQITSMLEGVIKH 664 I + K ++ Q+ P+ V +Y ++ V+K Sbjct: 584 SIISDDNKVLY-----------------QNFPQSK----HVESSQASYLTLYAMQQVVKS 622 Query: 665 GTAT--GKVRLNRPVAGKTGTTSSYRDTWFIGYTPTLVVGVYVGYDIPAPLNNHAT---G 719 GTA G + +AGKTGTT++ D+WF+G VV ++G D NNH T G Sbjct: 623 GTAKSLGTIFKEFSLAGKTGTTNNLVDSWFVGIDGKQVVITWIGRD-----NNHTTKLYG 677 Query: 720 STLTAPIFNAFMKEALKNIPSSRFVAPPGMSLIPINKWTGMLSKKG 765 S+ I+ +++ +N AP +++ IN + KKG Sbjct: 678 SSGAMKIYKRYLQ--YQNPVPLVLKAPNNINMFYINNLGELFCKKG 721 >gnl|CDD|184078 PRK13481, PRK13481, glycosyltransferase; Provisional. Length = 232 Score = 143 bits (363), Expect = 1e-34 Identities = 67/182 (36%), Positives = 105/182 (57%), Gaps = 11/182 (6%) Query: 73 FLPIQIIPSHVKYAFVSAEDKNFYYHSGVDIFGIMRAVLHNIRNISHGRRPEGASTITQQ 132 F+ +P +VK AF+S ED+ FY H G D+ G RA+ I + R +G STITQQ Sbjct: 47 FVSADNMPEYVKGAFISMEDERFYKHHGFDLKGTTRALFSTISD----RDVQGGSTITQQ 102 Query: 133 VAKNFLLTSNQTMDRKIKEILLSFRLEKAYDKEKILEFYLNEIFFGFNSYGIASAALTYF 192 V KN+ + ++ RK+KE+ ++ R+EK Y K +IL FYLN I+FG N Y + AA YF Sbjct: 103 VVKNYFYDNERSFTRKVKELFVAHRVEKQYSKNEILSFYLNNIYFGDNQYTLEGAANHYF 162 Query: 193 NKSV-------SELTIEEAAYLAALPKGPSNYDPFRKNKAAIARRNWVIDRMEENGYISQ 245 +V S +T+ ++A LA+ PS Y+ ++ R + +++M++ YI++ Sbjct: 163 GTTVNKNSTTMSHITVLQSAILASKVNAPSVYNINDMSENFTQRVSTNLEKMKQQNYINE 222 Query: 246 EQ 247 Q Sbjct: 223 TQ 224 >gnl|CDD|178830 PRK00056, mtgA, monofunctional biosynthetic peptidoglycan transglycosylase; Provisional. Length = 236 Score = 133 bits (336), Expect = 2e-31 Identities = 64/165 (38%), Positives = 91/165 (55%), Gaps = 7/165 (4%) Query: 75 PIQIIPSHVKYAFVSAEDKNFYYHSGVDIFGIMRAVLHNIRNISHGRRPEGASTITQQVA 134 P I ++K A ++AED+ F H G D I +A+ HN R +G+R GASTI+QQ A Sbjct: 64 PYDQISPNLKRAVIAAEDQKFPEHWGFDWDAIQKALEHNER---NGKRVRGASTISQQTA 120 Query: 135 KNFLLTSNQTMDRKIKEILLSFRLEKAYDKEKILEFYLNEIFFGFNSYGIASAALTYFNK 194 KN L ++ RK E L+ +E + K +ILE YLN +G +G +AA YF K Sbjct: 121 KNLFLWPGRSWVRKGLEAPLTLMIELVWSKRRILEVYLNIAEWGPGIFGAEAAARHYFGK 180 Query: 195 SVSELTIEEAAYLAA-LPKGPSNYDPFRKNKAAIARR-NWVIDRM 237 S+L+ +AA LAA LP P YD + + RR W++ +M Sbjct: 181 PASKLSASQAALLAAVLPN-PRRYDA-HRPSPYVRRRAAWILRQM 223 >gnl|CDD|162682 TIGR02070, mono_pep_trsgly, monofunctional biosynthetic peptidoglycan transglycosylase. This family is one of the transglycosylases involved in the late stages of peptidoglycan biosynthesis. Members tend to be small, about 240 amino acids in length, and consist almost entirely of a domain described by pfam model pfam00912 for transglycosylases. Species with this protein will have several other transglycosylases as well. All species with this protein are Proteobacteria that produce murein (peptidoglycan). Length = 224 Score = 121 bits (305), Expect = 9e-28 Identities = 57/164 (34%), Positives = 85/164 (51%), Gaps = 9/164 (5%) Query: 75 PIQIIPSHVKYAFVSAEDKNFYYHSGVDIFGIMRAVLHNIRNISHGRRPEGASTITQQVA 134 P I ++K A +++ED F H G D I A+ N ++ G+ G STI+QQ+A Sbjct: 59 PYDQISPNLKRAVIASEDAKFVEHHGFDWEAIQDALEKNEKS---GKVVRGGSTISQQLA 115 Query: 135 KNFLLTSNQTMDRKIKEILLSFRLEKAYDKEKILEFYLNEIFFGFNSYGIASAALTYFNK 194 KN L S ++ RK E ++ LE + K++ILE YLN + +G +G +AA YF + Sbjct: 116 KNLFLWSGRSYLRKGLEAWATWMLETWWSKQRILEVYLNSVEWGNGVFGAEAAARYYFKR 175 Query: 195 SVSELTIEEAAYLAALPKGPSNYDP------FRKNKAAIARRNW 232 S S LT +AA LAA+ P YD R+ I ++ Sbjct: 176 SASNLTRGQAARLAAVLPNPKYYDENRPGPYVRRKATWILKQMG 219 >gnl|CDD|183049 PRK11240, PRK11240, penicillin-binding protein 1C; Provisional. Length = 772 Score = 118 bits (298), Expect = 5e-27 Identities = 77/221 (34%), Positives = 113/221 (51%), Gaps = 18/221 (8%) Query: 86 AFVSAEDKNFYYHSGVDIFGIMRAVLHNIRNISHGRRPEGASTITQQVAKNFLLTSNQTM 145 A ++ ED+ F+ H GV+ F + RA ++ + GR G ST+T QVA+ L +T Sbjct: 77 ALINYEDRWFWKHPGVNPFSVARAAWQDLTS---GRVISGGSTLTMQVAR-LLDPHPRTF 132 Query: 146 DRKIKEILLSFRLEKAYDKEKILEFYLNEIFFGFNSYGIASAALTYFNKSVSELTIEEAA 205 KI+++ + +LE K +IL YLN FG GI +A+ Y KS + L+ EAA Sbjct: 133 GGKIRQLWRALQLEWHLSKREILTLYLNRAPFGGTLQGIGAASWAYLGKSPANLSYAEAA 192 Query: 206 YLAALPKGPSNYDPFRKNKAAIARRNWVIDRMEENGYISQEQALVAKQKPLKITIKQRRS 265 LA LP+ PS P R + A A RN V++RM E G S EQ ++++P+ + +Q Sbjct: 193 LLAVLPQAPSRLRPDRWPERAEAARNKVLERMAEQGVWSAEQVKESREEPVWLAPRQ-MP 251 Query: 266 HLFGSEYFAEEVRRQLIDRYGEKALYEDGLSIRTSLDPQLQ 306 L + FA R L +K I T+LD LQ Sbjct: 252 QL--APLFA---RMMLGKSKSDK--------IVTTLDAGLQ 279 Score = 80.5 bits (199), Expect = 1e-15 Identities = 73/290 (25%), Positives = 110/290 (37%), Gaps = 55/290 (18%) Query: 430 GWRLRQIPKVQGGLIAMDPRTGRILATIGGFSYS-QSEFNR--STQAMRQPGSCFKPIVY 486 W+ R P+ +I +D + +G + S F A+R PGS KP VY Sbjct: 288 NWKGRLPPRSSLAMIVVDHTDMAVRGWVGSVDLNDDSRFGHVDMVNAIRSPGSVLKPFVY 347 Query: 487 AAALDSGYT-PASVIMDAPIEVVSRGKIWKPENYSKNFSGASTLRFGLEKSRNLMTVRLA 545 ALD G PAS++ D P R ++P N+ F G ++ L +S NL V++ Sbjct: 348 GLALDDGLIHPASLLQDVP----RRTGDYRPGNFDSGFHGPVSMSEALVRSLNLPAVQVL 403 Query: 546 HNMGMTVVADYAENFGIYDKML----PVLPMSLGAGETTVLRMVSAYAVFANGGKQIRPS 601 G A N G+ + P L + LG + MV+AY+ FA GK + Sbjct: 404 EAYGPKRFAAKLRNVGLPLYLPAGAEPNLSLILGGAGARLEDMVAAYSAFARHGKAAKLR 463 Query: 602 FI--DRIQNRYGKTIFNQEQRICDDCNYDTWNGQDEPEIIDKREQVLDPMTAYQITSMLE 659 D + R ++ P A+ I ++ Sbjct: 464 LQPDDPLLER----------------------------------PLMSPGAAWIIRRIMA 489 Query: 660 GVIK---HGTATGKVRLNRPVAGKTGTTSSYRDTWFIGYTPTLVVGVYVG 706 + V P+A KTGT+ YRD W IG V+G++ G Sbjct: 490 DEAQPLPDAALPRVV----PLAWKTGTSYGYRDAWAIGVNARYVIGIWTG 535 >gnl|CDD|163256 TIGR03423, pbp2_mrdA, penicillin-binding protein 2. Members of this protein family are penicillin-binding protein 2 (PBP-2), a protein whose gene (designated pbpA or mrdA) generally is found next to the gene for RodA, a protein required for rod (bacillus) shape in many bacteria. PBP-2 acts as a transpeptidase for cell elongation (hence, rod-shape). Length = 592 Score = 106 bits (268), Expect = 2e-23 Identities = 91/376 (24%), Positives = 134/376 (35%), Gaps = 115/376 (30%) Query: 441 GGLIAMDPRTGRILAT-----------IGGFSYSQ----------SEFNRSTQAMRQPGS 479 G ++ MDPRTG ILA + G S NR+ Q + PGS Sbjct: 249 GAVVVMDPRTGEILAMVSTPSFDPNLFVDGISSKDWKALLNDPDRPLLNRAIQGVYPPGS 308 Query: 480 CFKPIVYAAALDSGYTPASVIMDAPIEVVSRGKI---WKPENYSKNFSGASTLRFGLEKS 536 FKP V AAL+ G + P G+ WK + G LR +E+S Sbjct: 309 TFKPFVALAALEEGVITPETRIYCPGYFQLGGRRFRCWKRGGH-----GRVDLRKAIEES 363 Query: 537 RNLMTVRLAHNMGMTVVADYAENFGIYDK-----------MLP----------------- 568 ++ +LA +G+ +A+YA+ FG K ++P Sbjct: 364 CDVYFYQLALRLGIDKIAEYAKKFGFGQKTGIDLPGEKSGLVPSREWKRKRFGQPWYPGD 423 Query: 569 VLPMSLGAGETTV--LRMVSAYAVFANGGKQIRPSFIDRIQNRYGKTIFNQEQRICDDCN 626 L +S+G G V L++ A A ANGGK +P + I++ G + Sbjct: 424 TLNVSIGQGYVLVTPLQLAVATAALANGGKLYKPHLVKSIEDPDGGVVQ----------- 472 Query: 627 YDTWNGQDEPEIIDKREQVLDPMTAYQITSMLEGVIKH--GTATGKVRLNRPV--AGKTG 682 + EPE++ + P + + V+ GTA + RL P AGKTG Sbjct: 473 ------ETEPEVLRPL--PISPENLDVVREGMRDVVNEPGGTA-RRARLGLPYKMAGKTG 523 Query: 683 T-----------------TSSYRDT-WFIGYTP----TLVVGVYVGYDIPAPLNNHA-TG 719 T RD F+ + P + V V + H G Sbjct: 524 TAQVVSLKQGEKYDAEQIPERLRDHALFVAFAPYDNPKIAVAV---------IVEHGGGG 574 Query: 720 STLTAPIFNAFMKEAL 735 S+ API M Sbjct: 575 SSAAAPIARKIMDAYF 590 >gnl|CDD|131269 TIGR02214, spoVD_pbp, stage V sporulation protein D. This model describes the spoVD subfamily of homologs of the cell division protein FtsI, a penicillin binding protein. This subfamily is restricted to Bacillus subtilis and related Gram-positive species with known or suspected endospore formation capability. In these species, the functional equivalent of FtsI is desginated PBP-2B, a paralog of spoVD. Length = 636 Score = 76.8 bits (189), Expect = 2e-14 Identities = 79/342 (23%), Positives = 126/342 (36%), Gaps = 72/342 (21%) Query: 443 LIAMDPRTGRILATIGGFSYSQSEF----------NRSTQAMRQPGSCFKPIVYAAALDS 492 +I M+P+ G IL +Y ++ NR+ +PGS FK I +AA++ Sbjct: 243 IIVMNPKNGEILGMSNRPTYDPNDPRDKSPDTARRNRAVSDAYEPGSTFKIITSSAAMEE 302 Query: 493 GYTPASVIM--DAPIEVVSRG-KIWKPENYSKNFSGASTLRFGLEKSRNLMTVRLAHNMG 549 G S D V + K WKP + G+ T ++ S N + L +G Sbjct: 303 GIVKESDKFYDDGSATVGGKKIKCWKPGGH-----GSQTFPEVVQNSCNPGFIELGMRLG 357 Query: 550 MTVVADYAENFGI------------------YDKMLPV--LPMSLGAGET-TVLRMVSAY 588 + +Y FG K+ PV +S G T T +++++A Sbjct: 358 AEKLNNYILAFGFGSKTGIDLPGEAAGILVPKKKVGPVDLATISFGQANTVTPIQLMTAV 417 Query: 589 AVFANGGKQIRPSFIDRIQNRYGKTIFNQEQRICDDCNYDTWNGQDEPEIIDKREQVLDP 648 ANGGK I+P + I + + EPE+ + QV+ Sbjct: 418 NAVANGGKLIQPHIMKEISDSQNNAVDQTF----------------EPEV---KRQVVSK 458 Query: 649 MTAYQITSMLEGVIKHGTATGKVRLNRPVAGKTGTTSSYRDTW----------FIGYTPT 698 T ++ LE V+ G+ V GKTGT + F+G+ P Sbjct: 459 ETTQKLRLALETVVSKGSGKNAFIEGYRVGGKTGTAQKVKPNGGYMEGEYIVSFVGFAPA 518 Query: 699 --LVVGVYVGYDIPAPLNNHATGSTLTAPIFNAFMKEALKNI 738 V V V D P + G + AP+F + + L + Sbjct: 519 DDPAVAVLVVVDNPKGVQQF--GGLVAAPVFGSVFNDILNYL 558 >gnl|CDD|185060 PRK15105, PRK15105, peptidoglycan synthase FtsI; Provisional. Length = 578 Score = 38.6 bits (90), Expect = 0.006 Identities = 34/131 (25%), Positives = 57/131 (43%), Gaps = 14/131 (10%) Query: 441 GGLIAMDPRTGRILATIGGFSYSQSEF---------NRSTQAMRQPGSCFKPIVYAAALD 491 G + +D TG +LA SY+ + NR+ + +PGS KP+V AL Sbjct: 259 GSAVLVDVNTGEVLAMANSPSYNPNNLSGTPKDAMRNRAITDVFEPGSTVKPMVVMTALQ 318 Query: 492 SGYTPASVIMDAPIEVVSRGKIWKPENYSKNFSGASTLRFGLEKSRNLMTVRLAHNMGMT 551 G + +++ ++ +I YS+ TL L+KS N+ +LA M + Sbjct: 319 RGVVKENSVLNTVPYRINGHEIKDVARYSE-----LTLTGVLQKSSNVGVSKLALAMPSS 373 Query: 552 VVADYAENFGI 562 + D FG+ Sbjct: 374 ALVDTYSRFGL 384 >gnl|CDD|182738 PRK10795, PRK10795, penicillin-binding protein 2; Provisional. Length = 634 Score = 38.6 bits (90), Expect = 0.007 Identities = 41/167 (24%), Positives = 70/167 (41%), Gaps = 41/167 (24%) Query: 422 IYVEHINEGWRLRQIPKVQGGLIAMDPRTGRILATIGGFSYSQSEF-------------- 467 Y+E + G R ++ DPRTG ILA + SY + F Sbjct: 261 QYIETLLAGSR--------AAVVVTDPRTGGILALVSTPSYDPNLFVDGISSKDYSGLLN 312 Query: 468 -------NRSTQAMRQPGSCFKPIVYAAALDSGY-TPASVIMDAPIEVV----SRGKIWK 515 NR+TQ + P S KP V +AL +G T + + D + R + WK Sbjct: 313 DPNRPLINRATQGVYPPASTVKPYVAVSALSAGVITRNTSLFDPGWWQLPGSEKRYRDWK 372 Query: 516 PENYSK-NFSGASTLRFGLEKSRNLMTVRLAHNMGMTVVADYAENFG 561 + + N + + LE+S + ++A++MG+ ++++ FG Sbjct: 373 KWGHGRLNVTKS------LEESADTFFYQVAYDMGIDRLSEWMGKFG 413 >gnl|CDD|151551 pfam11107, FANCF, Fanconi anemia group F protein (FANCF). FANCF regulates its own expression by methylation at both mRNA and protein levels. Methylation-induced inactivation of FANCF has an important role on the occurrence of ovarian cancers by disrupting the FA-BRCA pathway. Length = 343 Score = 31.3 bits (71), Expect = 1.0 Identities = 18/75 (24%), Positives = 27/75 (36%), Gaps = 6/75 (8%) Query: 232 WVIDRMEENGYISQEQALVAKQKPLKITIKQRRSHLFGSEYFAEEVRRQLIDRYGEKALY 291 W+I + E ++ E ++ RS GS + L D + + Sbjct: 273 WMIYDVFEGLWVGLE-----AAGSFDELCERFRSLTQGSPPLKDATLTALEDLKRQDGDF 327 Query: 292 E-DGLSIRTSLDPQL 305 E GLSI T L L Sbjct: 328 EVPGLSIWTDLLLAL 342 >gnl|CDD|178231 PLN02624, PLN02624, ornithine-delta-aminotransferase. Length = 474 Score = 30.9 bits (70), Expect = 1.2 Identities = 31/98 (31%), Positives = 41/98 (41%), Gaps = 22/98 (22%) Query: 503 APIEVV-SRGK---IWKPE--NYSKNFSGASTLRFG----------LEKSRNL-MTVRLA 545 PI VV SR K IW PE Y S S + G E++ L ++ R Sbjct: 55 HPIPVVFSRAKGSRIWDPEGKKYLDFLSAYSAVNQGHCHPKIIKALTEQAEKLTLSSRAF 114 Query: 546 HNMGMTVVADYAENFGIYDKMLPVLPMSLGA--GETTV 581 +N A+Y + YD VLPM+ GA ET + Sbjct: 115 YNDKFPEFAEYLTSMFGYDM---VLPMNTGAEGVETAI 149 >gnl|CDD|179436 PRK02507, PRK02507, proton extrusion protein PcxA; Provisional. Length = 422 Score = 29.1 bits (66), Expect = 4.9 Identities = 13/48 (27%), Positives = 26/48 (54%), Gaps = 7/48 (14%) Query: 130 TQQVAKNFLLTS--NQTMDRKIKEILLSFRL-EKAYDK----EKILEF 170 TQQ++K F+++ + EI ++ L E+A ++ ++ LEF Sbjct: 215 TQQLSKTFIVSPLVDHFFPALPFEIFINPELEEEALEELRRFKEELEF 262 >gnl|CDD|181850 PRK09430, djlA, Dna-J like membrane chaperone protein; Provisional. Length = 267 Score = 29.0 bits (66), Expect = 5.2 Identities = 9/22 (40%), Positives = 12/22 (54%) Query: 8 FIGYFFGFATYSILGAILGASI 29 +G+ FGF GA+LG I Sbjct: 7 ILGFAFGFLFGGFFGALLGLLI 28 >gnl|CDD|182631 PRK10667, PRK10667, Hha toxicity attenuator; Provisional. Length = 122 Score = 28.4 bits (64), Expect = 7.6 Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 4/55 (7%) Query: 149 IKEILLSFRLEKAYDKEKI---LEFYLNEIFFGFNSYGIASAALTYFNKSVSELT 200 I L+F++ K + K+ ++ YL++ + F+SYGI L + KS + L Sbjct: 55 IATFALNFKI-KYPEDSKLIEQIDEYLDDTYMLFSSYGINDQDLQKWRKSGNRLF 108 >gnl|CDD|173265 PRK14804, PRK14804, ornithine carbamoyltransferase; Provisional. Length = 311 Score = 28.5 bits (63), Expect = 8.1 Identities = 20/88 (22%), Positives = 38/88 (43%), Gaps = 11/88 (12%) Query: 596 KQIRPSFIDRIQNRYGKTIFNQEQRICDDCNY---DTWNGQD---EPEIIDKREQVLDPM 649 + I ++R + + + + +Y DTW + +P DK++Q ++ M Sbjct: 190 ENIHAQTVERAKKKGTLSWEMNLHKAVSHADYVYTDTWLDMEFFNDPSYADKKKQRMELM 249 Query: 650 TAYQITSMLEGVIKHGTATGKVRLNRPV 677 YQI S L ++ A KV + P+ Sbjct: 250 MPYQINSSL---MEKTNA--KVMHDMPI 272 >gnl|CDD|130253 TIGR01185, devC, DevC protein. This model describes a predicted membrane subunit, DevC, of an ABC transporter known so far from two species of cyanobacteria. Some experimental data from mutational analysis suggest that this protein along with DevA and DevB encoded in the same operon may be involved in the transport/export of glycolipids. Length = 380 Score = 27.9 bits (62), Expect = 9.4 Identities = 12/47 (25%), Positives = 24/47 (51%), Gaps = 2/47 (4%) Query: 2 YYRIVSFIGYFFGFATYS--ILGAILGASIYIAKISQNLPDYAALNS 46 Y+ + IG+ F T I+G ++ I +++ +L +YA L + Sbjct: 250 YWASSTAIGFIFTLGTIMGFIVGTVIVYQILYTEVADHLSEYATLKA 296 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.318 0.135 0.394 Gapped Lambda K H 0.267 0.0822 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 13,761,542 Number of extensions: 929297 Number of successful extensions: 1876 Number of sequences better than 10.0: 1 Number of HSP's gapped: 1824 Number of HSP's successfully gapped: 43 Length of query: 817 Length of database: 5,994,473 Length adjustment: 101 Effective length of query: 716 Effective length of database: 3,812,065 Effective search space: 2729438540 Effective search space used: 2729438540 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 61 (27.1 bits)