RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780752|ref|YP_003065165.1| penicillin binding
peptidoglycan synthetase protein [Candidatus Liberibacter asiaticus
str. psy62]
(817 letters)
>gnl|CDD|183248 PRK11636, mrcA, penicillin-binding protein 1a; Provisional.
Length = 850
Score = 475 bits (1224), Expect = e-134
Identities = 281/864 (32%), Positives = 440/864 (50%), Gaps = 121/864 (14%)
Query: 6 VSFIGYFFGFATYSILGAILGA-SIY--IAKISQNLPDYAALNSYSPAVTTRIHAGNGAL 62
+ F+ Y A IL LGA SIY I LPD A L ++++ +G L
Sbjct: 1 MKFVKYLLILAVCCIL---LGAGSIYGLYRYIEPQLPDVATLKDVRLQTPMQVYSADGEL 57
Query: 63 MAEYARENRLFLPIQIIPSHVKYAFVSAEDKNFYYHSGVDIFGIMRAVLHNIRNISHGRR 122
+A+Y + R+ L + IP + AF++ ED FY H GVD GI RA + G
Sbjct: 58 IAQYGEKRRIPLTLDQIPPEMVKAFIATEDSRFYEHHGVDPVGIFRAA---SVALFSGHA 114
Query: 123 PEGASTITQQVAKNFLLTSNQTMDRKIKEILLSFRLEKAYDKEKILEFYLNEIFFGFNSY 182
+GASTITQQ+A+NF L+ +T+ RKIKE L+ R+E+ K++ILE YLN+I+ G+ +Y
Sbjct: 115 SQGASTITQQLARNFFLSPERTLMRKIKEAFLAIRIEQLLTKDEILELYLNKIYLGYRAY 174
Query: 183 GIASAALTYFNKSVSELTIEEAAYLAALPKGPSNYDPFRKNKAAIARRNWVIDRMEENGY 242
G+ +AA YF K+V +LT+ E A +A LPK PS ++P A+ARRN V+ RM + GY
Sbjct: 175 GVGAAAQVYFGKTVDQLTLSEMAVIAGLPKAPSTFNPLYSMDRAVARRNVVLSRMLDEGY 234
Query: 243 ISQEQALVAKQKPLKITIKQRRSH----LFGSEYFAEEVRRQLIDRYGEKALYEDGLSIR 298
I+Q Q A+ +P+ H F + Y +E VR+++ +RYGE A YEDG +
Sbjct: 235 ITQAQYDQARSEPI-----VANYHAPEIAFSAPYLSEMVRQEMYNRYGENA-YEDGYRVY 288
Query: 299 TSLDPQLQLYARKALQNGLINYDQNDGFRGPIKRI--------DLKKDWGNTLASIPTLY 350
T++ ++Q A++A++N +++YD G+RGP + D KK +TL ++PT Y
Sbjct: 289 TTITRKVQQAAQQAVRNNVLDYDMRHGYRGPANVLWKVGESAWDNKK-ITDTLKALPT-Y 346
Query: 351 D--VPEWDIAVVLEVSNSHITIGIRPTIDSNGKVTTERKKGIIEADSMRWVYNKEQTTEE 408
+P AVV + T + V + + +RW T++
Sbjct: 347 GPLLP----AVVTSANPQEATA----MLADGSSVA-------LPMEGVRWARPYRSDTQQ 391
Query: 409 TSENR---NVLSLGDVIYVEHINEGWRLRQIPKVQGGLIAMDPRTGRILATIGGFSYSQS 465
R +V+ G I+V +++ W L Q+P V L++++P+ G ++A +GGF ++QS
Sbjct: 392 GPTPRKVTDVVQTGQQIWVRQVDDAWWLAQVPDVNSALVSINPQNGAVMALVGGFDFNQS 451
Query: 466 EFNRSTQAMRQPGSCFKPIVYAAALDSGYTPASVIMDAPIEVVSR-----GKIWKPENYS 520
+FNR+TQA+RQ GS KP +Y AA+D G T AS++ D PI SR G W+P+N
Sbjct: 452 KFNRATQALRQVGSNIKPFLYTAAMDKGLTLASMLNDVPI---SRWDAGAGSDWRPKNSP 508
Query: 521 KNFSGASTLRFGLEKSRNLMTVRLAHNMGMTVVADYAENFGIYDK-MLPVLPMSLGAGET 579
++G LR GL +S+N++ VR MG+ A+Y + FG + ++ ++LG+
Sbjct: 509 PQYAGPIRLRQGLGQSKNVVMVRAMRAMGVDYAAEYLQRFGFPAQNIVHTESLALGSASF 568
Query: 580 TVLRMVSAYAVFANGGKQIRPSFIDRIQNRYGKTIFNQEQRI-CDDCNYDTWNGQDEPEI 638
T +++ YAV ANGG + P FI +I+N G IF + ++ C +C+ G +
Sbjct: 569 TPMQVARGYAVMANGGFLVDPYFISKIENDQGGVIFEAKPKVACPECDIPVIYGDTQKSN 628
Query: 639 I---DKREQV---------------LDPMTAYQ-------------ITSMLEGVIKH--- 664
+ D E V L+ I + L +IK
Sbjct: 629 VLENDDVENVATSQEQQNSSVPMPQLEQANQALVAQNGAQEYAPHVINTPLAFLIKSALN 688
Query: 665 ----------GTA--TGKVRLNRPVAGKTGTTSSYRDTWFIGYTPTLVVGVYVGYD---- 708
GT G+ R + GKTGTT+S +D WF GY P +V V++G+D
Sbjct: 689 TNIFGEPGWMGTGWRAGRDLKRRDIGGKTGTTNSSKDAWFSGYGPGVVTSVWIGFDDHRR 748
Query: 709 ----------IPAPLNNHATGSTLTAPIFNAFMKEALKNIPSSRFVAPPGMSLIPINKWT 758
I ++ + G+ P ++ +MK AL+ +P PPG+ + I++ T
Sbjct: 749 DLGRTTASGAIKDQISGYEGGAKSAQPAWDDYMKAALEGVPEQPLTPPPGIVTVNIDRST 808
Query: 759 GMLSKKGDPDTIIEAFKPGTGPAE 782
G L+ G ++ E F GT P +
Sbjct: 809 GKLANGG--NSREEYFIEGTQPTQ 830
>gnl|CDD|162686 TIGR02074, PBP_1a_fam, penicillin-binding protein, 1A family.
Bacterial that synthesize a cell wall of peptidoglycan
(murein) generally have several transglycosylases and
transpeptidases for the task. This family consists of
bifunctional transglycosylase/transpeptidase
penicillin-binding proteins (PBP). In the
Proteobacteria, this family includes PBP 1A but not the
paralogous PBP 1B (TIGR02071). This family also includes
related proteins, often designated PBP 1A, from other
bacterial lineages.
Length = 530
Score = 333 bits (857), Expect = 9e-92
Identities = 138/299 (46%), Positives = 176/299 (58%), Gaps = 23/299 (7%)
Query: 439 VQGGLIAMDPRTGRILATIGGFSYSQSEFNRSTQAMRQPGSCFKPIVYAAALDSGYTPAS 498
+Q L+A+DP TG + A +GG Y +S+FNR+TQA RQPGS FKP VYAAAL+ G+TPAS
Sbjct: 255 LQAALVAIDPDTGAVRALVGGRDYGESQFNRATQAKRQPGSTFKPFVYAAALEKGWTPAS 314
Query: 499 VIMDAPIEVVSRGKIWKPENYSKNFSGASTLRFGLEKSRNLMTVRLAHNMGMTVVADYAE 558
++ D PI + W P+NY + G TLR L +SRN+ VRL +G+ V A+
Sbjct: 315 IVDDEPITYSNGP--WSPKNYGGGYRGNVTLRQALAQSRNIPAVRLLDEVGLNKVVALAK 372
Query: 559 NFGIYDKMLPVLPMSLGAGETTVLRMVSAYAVFANGGKQIRPSFIDRIQNRYGKTIFNQE 618
FGI + PVL ++LG E + L M SAYAVFANGGK + P I +I +R GK I+ +
Sbjct: 373 RFGITSPLPPVLSLALGTVEVSPLEMASAYAVFANGGKYVEPHGIRKIVDRDGKVIYENK 432
Query: 619 QRICDDCNYDTWNGQDEPEIIDKREQVLDPMTAYQITSMLEGVIKHGTATGKVRLNRPVA 678
QV+ P TAY +T ML+GV++ GT RPVA
Sbjct: 433 P---------------------TTTQVISPATAYIMTDMLKGVVESGTGRSARLPGRPVA 471
Query: 679 GKTGTTSSYRDTWFIGYTPTLVVGVYVGYDIPAPLNNHATGSTLTAPIFNAFMKEALKN 737
GKTGTT + RD WF+GYTP V V+VGYD L TG L API+ FM EALKN
Sbjct: 472 GKTGTTQNSRDAWFVGYTPYYVTAVWVGYDDKKTLGKSGTGGGLAAPIWRDFMAEALKN 530
Score = 297 bits (763), Expect = 6e-81
Identities = 115/258 (44%), Positives = 163/258 (63%), Gaps = 4/258 (1%)
Query: 70 NRLFLPIQIIPSHVKYAFVSAEDKNFYYHSGVDIFGIMRAVLHNIRNISHGRRPEGASTI 129
R ++PI IP ++ AF++ ED+ FY H G+D+ GI RA + NI+ G EG STI
Sbjct: 1 RREYVPIDDIPENLINAFLAIEDRRFYDHFGIDLKGIGRAAV---NNITSGGVLEGGSTI 57
Query: 130 TQQVAKNFLLTSNQTMDRKIKEILLSFRLEKAYDKEKILEFYLNEIFFGFNSYGIASAAL 189
TQQ+AKN LT+ +T+ RKI+E LL+ +LE+ K++ILE YLN I+FG +YGI +AA
Sbjct: 58 TQQLAKNLYLTNERTITRKIQEALLALKLEQKLSKDEILELYLNRIYFGNGAYGIEAAAQ 117
Query: 190 TYFNKSVSELTIEEAAYLAALPKGPSNYDPFRKNKAAIARRNWVIDRMEENGYISQEQAL 249
YF KSV++LT+ EAA LA LPK PS Y+PF + A RRN V+ M ENGYI+ E+A
Sbjct: 118 FYFGKSVNDLTLAEAAMLAGLPKAPSAYNPFVNPERAKDRRNLVLSNMVENGYITAEEAE 177
Query: 250 VAKQKPLKITIKQRRSHLFGSEYFAEEVRRQLIDRYGEKALYEDGLSIRTSLDPQLQLYA 309
A +P+++ ++ + + + YF + V ++L + YGE LY GL I T+LD +Q A
Sbjct: 178 EAINEPIQLYLQTKTAEEYKYPYFVDYVIQELEEEYGE-ELYTGGLKIYTTLDLDMQKAA 236
Query: 310 RKALQNGLINYDQNDGFR 327
K L NGL +
Sbjct: 237 EKVLNNGLREAGRRANDD 254
>gnl|CDD|162683 TIGR02071, PBP_1b, penicillin-binding protein 1B. Bacterial that
synthesize a cell wall of peptidoglycan (murein)
generally have several transglycosylases and
transpeptidases for the task. This family consists of a
particular bifunctional transglycosylase/transpeptidase
in E. coli and other Proteobacteria, designated
penicillin-binding protein 1B.
Length = 730
Score = 206 bits (525), Expect = 3e-53
Identities = 86/253 (33%), Positives = 140/253 (55%), Gaps = 9/253 (3%)
Query: 69 ENRLFLPIQIIPSHVKYAFVSAEDKNFYYHSGVDIFGIMRAVLHNIRNISHGRRPEGAST 128
E RLF+P P + ++ ED++FY H G+ ++ I RAV N+ GR +G ST
Sbjct: 145 EQRLFVPRDQFPELLVDTLLATEDRDFYEHDGISLYSIGRAVWVNLTA---GRTVQGGST 201
Query: 129 ITQQVAKNFLLTSNQTMDRKIKEILLSFRLEKAYDKEKILEFYLNEIFFGFNS----YGI 184
+TQQ+ KN L++ +++ RK E ++ L+ Y K++ILE YLNE++ G + +G
Sbjct: 202 LTQQLVKNLFLSNERSLWRKANEAYMALILDARYSKDRILELYLNEVYLGQSGDDAIHGF 261
Query: 185 ASAALTYFNKSVSELTIEEAAYLAALPKGPSNYDPFRKNKAAIARRNWVIDRMEENGYIS 244
A+ YF + + EL++++ A L + KGPS Y+P+R A+ RRN V+ ++E I
Sbjct: 262 PLASQYYFGRPLGELSLDQVALLVGMVKGPSYYNPWRNPDRALERRNLVLRLLQEQKIID 321
Query: 245 QEQALVAKQKPLKITIKQRRSHLFGSEYFAEEVRRQLIDRYGEKALYEDGLSIRTSLDPQ 304
E+ + +PL + K + F + VRR+L + G+K GL I T+LDP
Sbjct: 322 DEEYDMLSARPLGVQKKGGIISRQPA--FLQLVRRELRQKLGDKVKDLSGLRIFTTLDPV 379
Query: 305 LQLYARKALQNGL 317
Q A +A+Q +
Sbjct: 380 SQSAAEQAVQETI 392
Score = 162 bits (413), Expect = 3e-40
Identities = 94/346 (27%), Positives = 154/346 (44%), Gaps = 39/346 (11%)
Query: 432 RLRQIPKVQGGLIAMDPRTGRILATIGGFSYSQSEFNRSTQAMRQPGSCFKPIVYAAALD 491
+ +++P ++ ++ D TG + A +GG + FNR+ QA RQ GS KP VY AL
Sbjct: 397 KKKKLPDLEAAMVVTDRFTGEVRAMVGGSDPQFAGFNRALQARRQIGSLVKPAVYLTALS 456
Query: 492 S--GYTPASVIMDAPIEV-VSRGKIWKPENYSKNFSGASTLRFGLEKSRNLMTVRLAHNM 548
Y + I D P+ + +S G++W P+NY + +SG L L S N+ TV L +
Sbjct: 457 QPDKYRLNTWIEDQPLSIKLSNGQVWSPQNYDRRYSGTVMLYDALAHSLNIPTVNLGMKV 516
Query: 549 GMTVVADYAENFGIYDKMLPVLP-MSLGAGETTVLRMVSAYAVFANGGKQIRPSFIDRIQ 607
G+ V+ GI +P +P M LGA T + Y A+GG + S + +
Sbjct: 517 GLPKVSQTWNKLGINKDEIPPVPSMLLGAINLTPYEVAQLYQTIASGGNRAPLSAVRSVL 576
Query: 608 NRYGKTIFNQEQRICDDCNYDTWNGQDEPEIIDKREQVLDPMTAYQITSMLEGVIKHGTA 667
+ GK ++ Q +P+ EQ + AY ++ V++ GTA
Sbjct: 577 DEDGKVLY-----------------QSDPQA----EQAVPSQAAYLTLYAMQQVVQRGTA 615
Query: 668 --TGKVRLNRPVAGKTGTTSSYRDTWFIGYTPTLVVGVYVGYDIPAPLNNHAT---GSTL 722
G + +AGKTGTT+ RD+WF G V +++G D +N T G++
Sbjct: 616 RSLGADFPSLSLAGKTGTTNDNRDSWFAGIDGKEVTIIWLGRD-----DNGPTKLTGASG 670
Query: 723 TAPIFNAFMKEALKNIPSSRFVAPP-GMSLIPINKWTGMLSKKGDP 767
++ ++ P + PP G+ ++ K P
Sbjct: 671 ALQVYARYLS---YQTPEPLLLVPPEGIDWFGVDPQGNGGCKANCP 713
>gnl|CDD|162685 TIGR02073, PBP_1c, penicillin-binding protein 1C. This subfamily
of the penicillin binding proteins includes the member
from E. coli designated penicillin-binding protein 1C.
Members have both transglycosylase and transpeptidase
domains and are involved in forming cross-links in the
late stages of peptidoglycan biosynthesis. All members
of this subfamily are presumed to have the same basic
function.
Length = 727
Score = 176 bits (449), Expect = 2e-44
Identities = 88/272 (32%), Positives = 136/272 (50%), Gaps = 22/272 (8%)
Query: 47 YSPAVTTRIHAGNGALMAEYA---RENRLFLPIQIIPSHVKYAFVSAEDKNFYYHSGVDI 103
S V R +G L+ + RL +P++ I A + EDK FY+H GV+
Sbjct: 10 SSTVVLDR----HGTLLRALLANDGQWRLPVPLEDISPKFLQALLLYEDKRFYWHPGVNP 65
Query: 104 FGIMRAVLHNIRNISHGRRPEGASTITQQVAKNFLLTSNQTMDRKIKEILLSFRLEKAYD 163
++RA +N+++GRR G ST+T Q+A+ ++T+ K++++ + +LE Y
Sbjct: 66 LALLRAAW---QNLTNGRRVSGGSTLTMQLARLLDPELSRTLTGKLRQMWRAIQLEARYS 122
Query: 164 KEKILEFYLNEIFFGFNSYGIASAALTYFNKSVSELTIEEAAYLAALPKGPSNYDPFRKN 223
K +ILE YLN +G N G+ +A+L YF K S L++ EAA LAALP+ PS R
Sbjct: 123 KREILEAYLNLAPYGGNLEGLRAASLIYFGKEPSSLSLAEAALLAALPQAPSARRLDRLP 182
Query: 224 KAAIARRNWVIDRMEENGYISQEQALVAKQKPLKITIKQRRSHLFGSEYFAEEVRRQLID 283
KAA A R+ ++DRM E G EQ +A +PL + +FA ++ R
Sbjct: 183 KAAKAARDRLLDRMVEQGPDDSEQVALAALEPL---PALPEPLPQLAPHFALKLLRA--- 236
Query: 284 RYGEKALYEDGLSIRTSLDPQLQLYARKALQN 315
E A I ++LD LQ + +
Sbjct: 237 -RPEIA-----SVIVSTLDADLQRRLEELARR 262
Score = 155 bits (393), Expect = 4e-38
Identities = 98/391 (25%), Positives = 149/391 (38%), Gaps = 56/391 (14%)
Query: 432 RLRQIPKVQGGLIAMDPRTGRILATIGGFSYSQSEFNRS-------TQAMRQPGSCFKPI 484
LR ++ +D R+G +LA +G S F+ S +A R PGS KP
Sbjct: 266 ALRPRGISNLAILVVDNRSGAVLAYVG----SADFFDDSNSGQVDGVRAPRSPGSTLKPF 321
Query: 485 VYAAALDSGY-TPASVIMDAPIEVVSRGKIWKPENYSKNFSGASTLRFGLEKSRNLMTVR 543
+YA ALD G P S++ D P+ + PEN+ K F G R L +S N+ VR
Sbjct: 322 LYALALDDGLLHPDSLLKDVPLRFGD----YAPENFDKTFHGPVPAREALARSLNIPAVR 377
Query: 544 LAHNMGMTVVADYAENFGIY----DKMLPVLPMSLGAGETTVLRMVSAYAVFANGGKQIR 599
L +G AD+ G+ L ++LG E T+ + + YA+ AN G
Sbjct: 378 LLERVGPPRFADFLRQAGLNLLKPKSDYYGLSLALGGAEITLQDLANLYAMLANQGLSGP 437
Query: 600 PSFIDRIQNRYGKTIFNQEQRICDDCNYDTWNGQDEPEIIDKREQVLDPMTAYQITSMLE 659
F+ R +RE++L P A+ + +L+
Sbjct: 438 LRFLQTDAKR------------------------------PERERLLSPGAAWIVLDILK 467
Query: 660 GVIKHGTATGKVRLNR--PVAGKTGTTSSYRDTWFIGYTPTLVVGVYVGYDIPAPLNNHA 717
+ L P+A KTGT+ +RD W G + +GV+VG P N
Sbjct: 468 DRPRPDDTLPLSALPTRLPLAWKTGTSYGFRDAWAAGVSGRYTIGVWVGNFDGKP-NPGF 526
Query: 718 TGSTLTAPIFNAFMKEALKNIPSSRFVAPPGMSLIPINKWTGMLSKKGDPDTIIEAFKPG 777
G+ AP+ + + S+ P + +P G L P+ I F PG
Sbjct: 527 FGAAAAAPLLFDILDALQASEASTL---PRPLKEVPGCLVLGNLPILPCPEQISTWFLPG 583
Query: 778 TGPAETYTVIDEDSNVSSEEILRRSPQANQA 808
P + +E I P +A
Sbjct: 584 GSPPTLSEPHKPVVILINEGIAACLPDKPEA 614
>gnl|CDD|181917 PRK09506, mrcB, bifunctional glycosyl transferase/transpeptidase;
Reviewed.
Length = 830
Score = 158 bits (400), Expect = 7e-39
Identities = 90/273 (32%), Positives = 151/273 (55%), Gaps = 17/273 (6%)
Query: 49 PAVTTRIHAGNGALMAEYARENRLFLPIQIIPSHVKYAFVSAEDKNFYYHSGVDIFGIMR 108
P + T + + NG E RLF+P P + ++ ED++FY H G+ ++ I R
Sbjct: 197 PRLITMLQSPNG--------EQRLFVPRSGFPDLLVDTLLATEDRHFYEHDGISLYSIGR 248
Query: 109 AVLHNIRNISHGRRPEGASTITQQVAKNFLLTSNQTMDRKIKEILLSFRLEKAYDKEKIL 168
AVL N++ GR +G ST+TQQ+ KN L++ +++ RK E ++ ++ Y K++IL
Sbjct: 249 AVL---ANLTAGRTVQGGSTLTQQLVKNLFLSNERSLWRKANEAYMALIMDARYSKDRIL 305
Query: 169 EFYLNEIFFGFNS----YGIASAALTYFNKSVSELTIEEAAYLAALPKGPSNYDPFRKNK 224
E YLNE++ G + G A+L YF + V EL++++ A L + KG S Y+P+R K
Sbjct: 306 ELYLNEVYLGQSGDDQIRGFPLASLYYFGRPVEELSLDQQALLVGMVKGASLYNPWRNPK 365
Query: 225 AAIARRNWVIDRMEENGYISQEQALVAKQKPLKITIKQRRSHLFGSEYFAEEVRRQLIDR 284
A+ RRN V+ +++ I QE + +PL ++ + + F + VR++L +
Sbjct: 366 LALERRNLVLRLLQQQQIIDQELYDMLSARPLG--VQPKGGVISPQPAFMQMVRQELQAK 423
Query: 285 YGEKALYEDGLSIRTSLDPQLQLYARKALQNGL 317
G+K G+ I T+LDP Q A KA++ G+
Sbjct: 424 LGDKVKDLSGVKIFTTLDPVSQDAAEKAVEEGI 456
Score = 121 bits (304), Expect = 1e-27
Identities = 86/336 (25%), Positives = 141/336 (41%), Gaps = 47/336 (13%)
Query: 434 RQIPKVQGGLIAMDPRTGRILATIGGFSYSQSEFNRSTQAMRQPGSCFKPIVYAAALD-- 491
R++ ++ ++ +D +G + A +GG + +NR+ QA R GS KP Y AL
Sbjct: 463 RKLSDLETAMVVVDRFSGEVRAMVGGSEPQFAGYNRAMQARRSIGSLAKPATYLTALSQP 522
Query: 492 SGYTPASVIMDAPIEV-VSRGKIWKPENYSKNFSGASTLRFGLEKSRNLMTVRLAHNMGM 550
Y + I DAPI + G++W P+N + FSG L L +S N+ TV L +G+
Sbjct: 523 DKYRLNTWIADAPISLRQPNGQVWSPQNDDRRFSGRVMLVDALTRSMNVPTVNLGMALGL 582
Query: 551 TVVADYAENFGIYDKMLPVLP-MSLGAGETTVLRMVSAYAVFANGGKQIRPSFIDRIQNR 609
V D G+ L +P M LGA T + + A+ A+GG + S + +
Sbjct: 583 PAVTDTWIKLGVPKDQLNPVPAMLLGALNLTPIEVAQAFQTIASGGNRAPLSALRSVIAE 642
Query: 610 YGKTIFNQEQRICDDCNYDTWNGQDEPEIIDKREQVLDPMTAYQITSMLEGVIKHGTAT- 668
GK ++ Q P + E+ + AY ++ V++ GT
Sbjct: 643 DGKVLY-----------------QSFP----QAERAVPAQAAYLTLYTMQQVVQRGTGRQ 681
Query: 669 -----GKVRLNRPVAGKTGTTSSYRDTWFIGYTPTLVVGVYVGYDIPAPLNNHATGSTLT 723
+ L AGKTGTT+ D+WF G V +VG D P G++
Sbjct: 682 LGAKYPNLHL----AGKTGTTNDLVDSWFAGIDGKEVTITWVGRDNNQPTK--LYGASGA 735
Query: 724 APIFNAFMKE----ALKNIPSSRFVAPPGMSLIPIN 755
I+ +++ L P P + + ++
Sbjct: 736 MTIYQRYLENQTPTPLNLTP------PEDIVDMGVD 765
>gnl|CDD|184852 PRK14850, PRK14850, penicillin-binding protein 1b; Provisional.
Length = 764
Score = 145 bits (367), Expect = 5e-35
Identities = 77/254 (30%), Positives = 133/254 (52%), Gaps = 11/254 (4%)
Query: 69 ENRLFLPIQIIPSHVKYAFVSAEDKNFYYHSGVDIFGIMRAVLHNIRNISHGRRPEGAST 128
+ RLF+P P + ++ EDK FY H G+ + I RA L N+ + G +G ST
Sbjct: 155 KKRLFIPRNQYPEMLIKTLLAIEDKYFYEHDGIHLSSIGRAFLVNLMS---GHTIQGGST 211
Query: 129 ITQQVAKNFLLTSNQTMDRKIKEILLSFRLEKAYDKEKILEFYLNEIFFGFNS----YGI 184
+TQQ+ KN LT+ +++ RKI EI ++ L++ Y K++ILE YLNE++ G + G
Sbjct: 212 LTQQLVKNLFLTNTRSLWRKINEIYMALILDRFYSKDRILELYLNEVYLGQDGNEQIRGF 271
Query: 185 ASAALTYFNKSVSELTIEEAAYLAALPKGPSNYDPFRKNKAAIARRNWVIDRMEENGYIS 244
A++ YF + ++EL +++ A L + KG S Y+P+ + RRN V+ + + I+
Sbjct: 272 PLASIYYFGRPINELNLDQYALLVGMVKGASLYNPWTNPNLTLKRRNLVLFLLYKQKVIT 331
Query: 245 QEQALVAKQKPLKITIKQRRSHLFGSE-YFAEEVRRQLIDRYGEKALYEDGLSIRTSLDP 303
++ +PL + Q + ++ S F + V + + G I T+LD
Sbjct: 332 RKLYKDLCSRPLNV---QSKGNIISSHPAFIQLVCEEFHKKIHYPFKNFSGTKIFTTLDY 388
Query: 304 QLQLYARKALQNGL 317
Q A +A++ G+
Sbjct: 389 ISQNAAEQAVKIGI 402
Score = 136 bits (343), Expect = 3e-32
Identities = 95/346 (27%), Positives = 156/346 (45%), Gaps = 40/346 (11%)
Query: 432 RLRQIPKVQ---GGLIAMDPRTGRILATIGGFSYSQSEFNRSTQAMRQPGSCFKPIVYAA 488
L++ +++ ++ +D +G + A IG + +NR+ +A R GS KPI Y
Sbjct: 404 ILKRKKRLKDLEVAMVIIDRFSGEVRALIGSSKPEFNGYNRALKARRSIGSLSKPITYLT 463
Query: 489 ALD--SGYTPASVIMDAPIEV-VSRGKIWKPENYSKNFSGASTLRFGLEKSRNLMTVRLA 545
AL Y + I D PI + + G+ W P+N + +FSG L L S N+ TV L+
Sbjct: 464 ALSQPEKYHLNTWISDTPISIKLDNGQYWTPKNNNFSFSGKVMLIDALIHSINIPTVHLS 523
Query: 546 HNMGMTVVADYAENFGIYDKMLPVLP-MSLGAGETTVLRMVSAYAVFANGGKQIRPSFID 604
N+G+ + D GI + LP +SLGA T + + + + +GG + S I
Sbjct: 524 INLGLKKLVDSWILLGISSNYITPLPSISLGAINLTPMEVAQVFQIIGSGGYKSSLSSIR 583
Query: 605 RIQNRYGKTIFNQEQRICDDCNYDTWNGQDEPEIIDKREQVLDPMTAYQITSMLEGVIKH 664
I + K ++ Q+ P+ V +Y ++ V+K
Sbjct: 584 SIISDDNKVLY-----------------QNFPQSK----HVESSQASYLTLYAMQQVVKS 622
Query: 665 GTAT--GKVRLNRPVAGKTGTTSSYRDTWFIGYTPTLVVGVYVGYDIPAPLNNHAT---G 719
GTA G + +AGKTGTT++ D+WF+G VV ++G D NNH T G
Sbjct: 623 GTAKSLGTIFKEFSLAGKTGTTNNLVDSWFVGIDGKQVVITWIGRD-----NNHTTKLYG 677
Query: 720 STLTAPIFNAFMKEALKNIPSSRFVAPPGMSLIPINKWTGMLSKKG 765
S+ I+ +++ +N AP +++ IN + KKG
Sbjct: 678 SSGAMKIYKRYLQ--YQNPVPLVLKAPNNINMFYINNLGELFCKKG 721
>gnl|CDD|184078 PRK13481, PRK13481, glycosyltransferase; Provisional.
Length = 232
Score = 143 bits (363), Expect = 1e-34
Identities = 67/182 (36%), Positives = 105/182 (57%), Gaps = 11/182 (6%)
Query: 73 FLPIQIIPSHVKYAFVSAEDKNFYYHSGVDIFGIMRAVLHNIRNISHGRRPEGASTITQQ 132
F+ +P +VK AF+S ED+ FY H G D+ G RA+ I + R +G STITQQ
Sbjct: 47 FVSADNMPEYVKGAFISMEDERFYKHHGFDLKGTTRALFSTISD----RDVQGGSTITQQ 102
Query: 133 VAKNFLLTSNQTMDRKIKEILLSFRLEKAYDKEKILEFYLNEIFFGFNSYGIASAALTYF 192
V KN+ + ++ RK+KE+ ++ R+EK Y K +IL FYLN I+FG N Y + AA YF
Sbjct: 103 VVKNYFYDNERSFTRKVKELFVAHRVEKQYSKNEILSFYLNNIYFGDNQYTLEGAANHYF 162
Query: 193 NKSV-------SELTIEEAAYLAALPKGPSNYDPFRKNKAAIARRNWVIDRMEENGYISQ 245
+V S +T+ ++A LA+ PS Y+ ++ R + +++M++ YI++
Sbjct: 163 GTTVNKNSTTMSHITVLQSAILASKVNAPSVYNINDMSENFTQRVSTNLEKMKQQNYINE 222
Query: 246 EQ 247
Q
Sbjct: 223 TQ 224
>gnl|CDD|178830 PRK00056, mtgA, monofunctional biosynthetic peptidoglycan
transglycosylase; Provisional.
Length = 236
Score = 133 bits (336), Expect = 2e-31
Identities = 64/165 (38%), Positives = 91/165 (55%), Gaps = 7/165 (4%)
Query: 75 PIQIIPSHVKYAFVSAEDKNFYYHSGVDIFGIMRAVLHNIRNISHGRRPEGASTITQQVA 134
P I ++K A ++AED+ F H G D I +A+ HN R +G+R GASTI+QQ A
Sbjct: 64 PYDQISPNLKRAVIAAEDQKFPEHWGFDWDAIQKALEHNER---NGKRVRGASTISQQTA 120
Query: 135 KNFLLTSNQTMDRKIKEILLSFRLEKAYDKEKILEFYLNEIFFGFNSYGIASAALTYFNK 194
KN L ++ RK E L+ +E + K +ILE YLN +G +G +AA YF K
Sbjct: 121 KNLFLWPGRSWVRKGLEAPLTLMIELVWSKRRILEVYLNIAEWGPGIFGAEAAARHYFGK 180
Query: 195 SVSELTIEEAAYLAA-LPKGPSNYDPFRKNKAAIARR-NWVIDRM 237
S+L+ +AA LAA LP P YD + + RR W++ +M
Sbjct: 181 PASKLSASQAALLAAVLPN-PRRYDA-HRPSPYVRRRAAWILRQM 223
>gnl|CDD|162682 TIGR02070, mono_pep_trsgly, monofunctional biosynthetic
peptidoglycan transglycosylase. This family is one of
the transglycosylases involved in the late stages of
peptidoglycan biosynthesis. Members tend to be small,
about 240 amino acids in length, and consist almost
entirely of a domain described by pfam model pfam00912
for transglycosylases. Species with this protein will
have several other transglycosylases as well. All
species with this protein are Proteobacteria that
produce murein (peptidoglycan).
Length = 224
Score = 121 bits (305), Expect = 9e-28
Identities = 57/164 (34%), Positives = 85/164 (51%), Gaps = 9/164 (5%)
Query: 75 PIQIIPSHVKYAFVSAEDKNFYYHSGVDIFGIMRAVLHNIRNISHGRRPEGASTITQQVA 134
P I ++K A +++ED F H G D I A+ N ++ G+ G STI+QQ+A
Sbjct: 59 PYDQISPNLKRAVIASEDAKFVEHHGFDWEAIQDALEKNEKS---GKVVRGGSTISQQLA 115
Query: 135 KNFLLTSNQTMDRKIKEILLSFRLEKAYDKEKILEFYLNEIFFGFNSYGIASAALTYFNK 194
KN L S ++ RK E ++ LE + K++ILE YLN + +G +G +AA YF +
Sbjct: 116 KNLFLWSGRSYLRKGLEAWATWMLETWWSKQRILEVYLNSVEWGNGVFGAEAAARYYFKR 175
Query: 195 SVSELTIEEAAYLAALPKGPSNYDP------FRKNKAAIARRNW 232
S S LT +AA LAA+ P YD R+ I ++
Sbjct: 176 SASNLTRGQAARLAAVLPNPKYYDENRPGPYVRRKATWILKQMG 219
>gnl|CDD|183049 PRK11240, PRK11240, penicillin-binding protein 1C; Provisional.
Length = 772
Score = 118 bits (298), Expect = 5e-27
Identities = 77/221 (34%), Positives = 113/221 (51%), Gaps = 18/221 (8%)
Query: 86 AFVSAEDKNFYYHSGVDIFGIMRAVLHNIRNISHGRRPEGASTITQQVAKNFLLTSNQTM 145
A ++ ED+ F+ H GV+ F + RA ++ + GR G ST+T QVA+ L +T
Sbjct: 77 ALINYEDRWFWKHPGVNPFSVARAAWQDLTS---GRVISGGSTLTMQVAR-LLDPHPRTF 132
Query: 146 DRKIKEILLSFRLEKAYDKEKILEFYLNEIFFGFNSYGIASAALTYFNKSVSELTIEEAA 205
KI+++ + +LE K +IL YLN FG GI +A+ Y KS + L+ EAA
Sbjct: 133 GGKIRQLWRALQLEWHLSKREILTLYLNRAPFGGTLQGIGAASWAYLGKSPANLSYAEAA 192
Query: 206 YLAALPKGPSNYDPFRKNKAAIARRNWVIDRMEENGYISQEQALVAKQKPLKITIKQRRS 265
LA LP+ PS P R + A A RN V++RM E G S EQ ++++P+ + +Q
Sbjct: 193 LLAVLPQAPSRLRPDRWPERAEAARNKVLERMAEQGVWSAEQVKESREEPVWLAPRQ-MP 251
Query: 266 HLFGSEYFAEEVRRQLIDRYGEKALYEDGLSIRTSLDPQLQ 306
L + FA R L +K I T+LD LQ
Sbjct: 252 QL--APLFA---RMMLGKSKSDK--------IVTTLDAGLQ 279
Score = 80.5 bits (199), Expect = 1e-15
Identities = 73/290 (25%), Positives = 110/290 (37%), Gaps = 55/290 (18%)
Query: 430 GWRLRQIPKVQGGLIAMDPRTGRILATIGGFSYS-QSEFNR--STQAMRQPGSCFKPIVY 486
W+ R P+ +I +D + +G + S F A+R PGS KP VY
Sbjct: 288 NWKGRLPPRSSLAMIVVDHTDMAVRGWVGSVDLNDDSRFGHVDMVNAIRSPGSVLKPFVY 347
Query: 487 AAALDSGYT-PASVIMDAPIEVVSRGKIWKPENYSKNFSGASTLRFGLEKSRNLMTVRLA 545
ALD G PAS++ D P R ++P N+ F G ++ L +S NL V++
Sbjct: 348 GLALDDGLIHPASLLQDVP----RRTGDYRPGNFDSGFHGPVSMSEALVRSLNLPAVQVL 403
Query: 546 HNMGMTVVADYAENFGIYDKML----PVLPMSLGAGETTVLRMVSAYAVFANGGKQIRPS 601
G A N G+ + P L + LG + MV+AY+ FA GK +
Sbjct: 404 EAYGPKRFAAKLRNVGLPLYLPAGAEPNLSLILGGAGARLEDMVAAYSAFARHGKAAKLR 463
Query: 602 FI--DRIQNRYGKTIFNQEQRICDDCNYDTWNGQDEPEIIDKREQVLDPMTAYQITSMLE 659
D + R ++ P A+ I ++
Sbjct: 464 LQPDDPLLER----------------------------------PLMSPGAAWIIRRIMA 489
Query: 660 GVIK---HGTATGKVRLNRPVAGKTGTTSSYRDTWFIGYTPTLVVGVYVG 706
+ V P+A KTGT+ YRD W IG V+G++ G
Sbjct: 490 DEAQPLPDAALPRVV----PLAWKTGTSYGYRDAWAIGVNARYVIGIWTG 535
>gnl|CDD|163256 TIGR03423, pbp2_mrdA, penicillin-binding protein 2. Members of
this protein family are penicillin-binding protein 2
(PBP-2), a protein whose gene (designated pbpA or mrdA)
generally is found next to the gene for RodA, a protein
required for rod (bacillus) shape in many bacteria.
PBP-2 acts as a transpeptidase for cell elongation
(hence, rod-shape).
Length = 592
Score = 106 bits (268), Expect = 2e-23
Identities = 91/376 (24%), Positives = 134/376 (35%), Gaps = 115/376 (30%)
Query: 441 GGLIAMDPRTGRILAT-----------IGGFSYSQ----------SEFNRSTQAMRQPGS 479
G ++ MDPRTG ILA + G S NR+ Q + PGS
Sbjct: 249 GAVVVMDPRTGEILAMVSTPSFDPNLFVDGISSKDWKALLNDPDRPLLNRAIQGVYPPGS 308
Query: 480 CFKPIVYAAALDSGYTPASVIMDAPIEVVSRGKI---WKPENYSKNFSGASTLRFGLEKS 536
FKP V AAL+ G + P G+ WK + G LR +E+S
Sbjct: 309 TFKPFVALAALEEGVITPETRIYCPGYFQLGGRRFRCWKRGGH-----GRVDLRKAIEES 363
Query: 537 RNLMTVRLAHNMGMTVVADYAENFGIYDK-----------MLP----------------- 568
++ +LA +G+ +A+YA+ FG K ++P
Sbjct: 364 CDVYFYQLALRLGIDKIAEYAKKFGFGQKTGIDLPGEKSGLVPSREWKRKRFGQPWYPGD 423
Query: 569 VLPMSLGAGETTV--LRMVSAYAVFANGGKQIRPSFIDRIQNRYGKTIFNQEQRICDDCN 626
L +S+G G V L++ A A ANGGK +P + I++ G +
Sbjct: 424 TLNVSIGQGYVLVTPLQLAVATAALANGGKLYKPHLVKSIEDPDGGVVQ----------- 472
Query: 627 YDTWNGQDEPEIIDKREQVLDPMTAYQITSMLEGVIKH--GTATGKVRLNRPV--AGKTG 682
+ EPE++ + P + + V+ GTA + RL P AGKTG
Sbjct: 473 ------ETEPEVLRPL--PISPENLDVVREGMRDVVNEPGGTA-RRARLGLPYKMAGKTG 523
Query: 683 T-----------------TSSYRDT-WFIGYTP----TLVVGVYVGYDIPAPLNNHA-TG 719
T RD F+ + P + V V + H G
Sbjct: 524 TAQVVSLKQGEKYDAEQIPERLRDHALFVAFAPYDNPKIAVAV---------IVEHGGGG 574
Query: 720 STLTAPIFNAFMKEAL 735
S+ API M
Sbjct: 575 SSAAAPIARKIMDAYF 590
>gnl|CDD|131269 TIGR02214, spoVD_pbp, stage V sporulation protein D. This model
describes the spoVD subfamily of homologs of the cell
division protein FtsI, a penicillin binding protein.
This subfamily is restricted to Bacillus subtilis and
related Gram-positive species with known or suspected
endospore formation capability. In these species, the
functional equivalent of FtsI is desginated PBP-2B, a
paralog of spoVD.
Length = 636
Score = 76.8 bits (189), Expect = 2e-14
Identities = 79/342 (23%), Positives = 126/342 (36%), Gaps = 72/342 (21%)
Query: 443 LIAMDPRTGRILATIGGFSYSQSEF----------NRSTQAMRQPGSCFKPIVYAAALDS 492
+I M+P+ G IL +Y ++ NR+ +PGS FK I +AA++
Sbjct: 243 IIVMNPKNGEILGMSNRPTYDPNDPRDKSPDTARRNRAVSDAYEPGSTFKIITSSAAMEE 302
Query: 493 GYTPASVIM--DAPIEVVSRG-KIWKPENYSKNFSGASTLRFGLEKSRNLMTVRLAHNMG 549
G S D V + K WKP + G+ T ++ S N + L +G
Sbjct: 303 GIVKESDKFYDDGSATVGGKKIKCWKPGGH-----GSQTFPEVVQNSCNPGFIELGMRLG 357
Query: 550 MTVVADYAENFGI------------------YDKMLPV--LPMSLGAGET-TVLRMVSAY 588
+ +Y FG K+ PV +S G T T +++++A
Sbjct: 358 AEKLNNYILAFGFGSKTGIDLPGEAAGILVPKKKVGPVDLATISFGQANTVTPIQLMTAV 417
Query: 589 AVFANGGKQIRPSFIDRIQNRYGKTIFNQEQRICDDCNYDTWNGQDEPEIIDKREQVLDP 648
ANGGK I+P + I + + EPE+ + QV+
Sbjct: 418 NAVANGGKLIQPHIMKEISDSQNNAVDQTF----------------EPEV---KRQVVSK 458
Query: 649 MTAYQITSMLEGVIKHGTATGKVRLNRPVAGKTGTTSSYRDTW----------FIGYTPT 698
T ++ LE V+ G+ V GKTGT + F+G+ P
Sbjct: 459 ETTQKLRLALETVVSKGSGKNAFIEGYRVGGKTGTAQKVKPNGGYMEGEYIVSFVGFAPA 518
Query: 699 --LVVGVYVGYDIPAPLNNHATGSTLTAPIFNAFMKEALKNI 738
V V V D P + G + AP+F + + L +
Sbjct: 519 DDPAVAVLVVVDNPKGVQQF--GGLVAAPVFGSVFNDILNYL 558
>gnl|CDD|185060 PRK15105, PRK15105, peptidoglycan synthase FtsI; Provisional.
Length = 578
Score = 38.6 bits (90), Expect = 0.006
Identities = 34/131 (25%), Positives = 57/131 (43%), Gaps = 14/131 (10%)
Query: 441 GGLIAMDPRTGRILATIGGFSYSQSEF---------NRSTQAMRQPGSCFKPIVYAAALD 491
G + +D TG +LA SY+ + NR+ + +PGS KP+V AL
Sbjct: 259 GSAVLVDVNTGEVLAMANSPSYNPNNLSGTPKDAMRNRAITDVFEPGSTVKPMVVMTALQ 318
Query: 492 SGYTPASVIMDAPIEVVSRGKIWKPENYSKNFSGASTLRFGLEKSRNLMTVRLAHNMGMT 551
G + +++ ++ +I YS+ TL L+KS N+ +LA M +
Sbjct: 319 RGVVKENSVLNTVPYRINGHEIKDVARYSE-----LTLTGVLQKSSNVGVSKLALAMPSS 373
Query: 552 VVADYAENFGI 562
+ D FG+
Sbjct: 374 ALVDTYSRFGL 384
>gnl|CDD|182738 PRK10795, PRK10795, penicillin-binding protein 2; Provisional.
Length = 634
Score = 38.6 bits (90), Expect = 0.007
Identities = 41/167 (24%), Positives = 70/167 (41%), Gaps = 41/167 (24%)
Query: 422 IYVEHINEGWRLRQIPKVQGGLIAMDPRTGRILATIGGFSYSQSEF-------------- 467
Y+E + G R ++ DPRTG ILA + SY + F
Sbjct: 261 QYIETLLAGSR--------AAVVVTDPRTGGILALVSTPSYDPNLFVDGISSKDYSGLLN 312
Query: 468 -------NRSTQAMRQPGSCFKPIVYAAALDSGY-TPASVIMDAPIEVV----SRGKIWK 515
NR+TQ + P S KP V +AL +G T + + D + R + WK
Sbjct: 313 DPNRPLINRATQGVYPPASTVKPYVAVSALSAGVITRNTSLFDPGWWQLPGSEKRYRDWK 372
Query: 516 PENYSK-NFSGASTLRFGLEKSRNLMTVRLAHNMGMTVVADYAENFG 561
+ + N + + LE+S + ++A++MG+ ++++ FG
Sbjct: 373 KWGHGRLNVTKS------LEESADTFFYQVAYDMGIDRLSEWMGKFG 413
>gnl|CDD|151551 pfam11107, FANCF, Fanconi anemia group F protein (FANCF). FANCF
regulates its own expression by methylation at both mRNA
and protein levels. Methylation-induced inactivation of
FANCF has an important role on the occurrence of ovarian
cancers by disrupting the FA-BRCA pathway.
Length = 343
Score = 31.3 bits (71), Expect = 1.0
Identities = 18/75 (24%), Positives = 27/75 (36%), Gaps = 6/75 (8%)
Query: 232 WVIDRMEENGYISQEQALVAKQKPLKITIKQRRSHLFGSEYFAEEVRRQLIDRYGEKALY 291
W+I + E ++ E ++ RS GS + L D + +
Sbjct: 273 WMIYDVFEGLWVGLE-----AAGSFDELCERFRSLTQGSPPLKDATLTALEDLKRQDGDF 327
Query: 292 E-DGLSIRTSLDPQL 305
E GLSI T L L
Sbjct: 328 EVPGLSIWTDLLLAL 342
>gnl|CDD|178231 PLN02624, PLN02624, ornithine-delta-aminotransferase.
Length = 474
Score = 30.9 bits (70), Expect = 1.2
Identities = 31/98 (31%), Positives = 41/98 (41%), Gaps = 22/98 (22%)
Query: 503 APIEVV-SRGK---IWKPE--NYSKNFSGASTLRFG----------LEKSRNL-MTVRLA 545
PI VV SR K IW PE Y S S + G E++ L ++ R
Sbjct: 55 HPIPVVFSRAKGSRIWDPEGKKYLDFLSAYSAVNQGHCHPKIIKALTEQAEKLTLSSRAF 114
Query: 546 HNMGMTVVADYAENFGIYDKMLPVLPMSLGA--GETTV 581
+N A+Y + YD VLPM+ GA ET +
Sbjct: 115 YNDKFPEFAEYLTSMFGYDM---VLPMNTGAEGVETAI 149
>gnl|CDD|179436 PRK02507, PRK02507, proton extrusion protein PcxA; Provisional.
Length = 422
Score = 29.1 bits (66), Expect = 4.9
Identities = 13/48 (27%), Positives = 26/48 (54%), Gaps = 7/48 (14%)
Query: 130 TQQVAKNFLLTS--NQTMDRKIKEILLSFRL-EKAYDK----EKILEF 170
TQQ++K F+++ + EI ++ L E+A ++ ++ LEF
Sbjct: 215 TQQLSKTFIVSPLVDHFFPALPFEIFINPELEEEALEELRRFKEELEF 262
>gnl|CDD|181850 PRK09430, djlA, Dna-J like membrane chaperone protein;
Provisional.
Length = 267
Score = 29.0 bits (66), Expect = 5.2
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 8 FIGYFFGFATYSILGAILGASI 29
+G+ FGF GA+LG I
Sbjct: 7 ILGFAFGFLFGGFFGALLGLLI 28
>gnl|CDD|182631 PRK10667, PRK10667, Hha toxicity attenuator; Provisional.
Length = 122
Score = 28.4 bits (64), Expect = 7.6
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Query: 149 IKEILLSFRLEKAYDKEKI---LEFYLNEIFFGFNSYGIASAALTYFNKSVSELT 200
I L+F++ K + K+ ++ YL++ + F+SYGI L + KS + L
Sbjct: 55 IATFALNFKI-KYPEDSKLIEQIDEYLDDTYMLFSSYGINDQDLQKWRKSGNRLF 108
>gnl|CDD|173265 PRK14804, PRK14804, ornithine carbamoyltransferase; Provisional.
Length = 311
Score = 28.5 bits (63), Expect = 8.1
Identities = 20/88 (22%), Positives = 38/88 (43%), Gaps = 11/88 (12%)
Query: 596 KQIRPSFIDRIQNRYGKTIFNQEQRICDDCNY---DTWNGQD---EPEIIDKREQVLDPM 649
+ I ++R + + + + +Y DTW + +P DK++Q ++ M
Sbjct: 190 ENIHAQTVERAKKKGTLSWEMNLHKAVSHADYVYTDTWLDMEFFNDPSYADKKKQRMELM 249
Query: 650 TAYQITSMLEGVIKHGTATGKVRLNRPV 677
YQI S L ++ A KV + P+
Sbjct: 250 MPYQINSSL---MEKTNA--KVMHDMPI 272
>gnl|CDD|130253 TIGR01185, devC, DevC protein. This model describes a predicted
membrane subunit, DevC, of an ABC transporter known so
far from two species of cyanobacteria. Some experimental
data from mutational analysis suggest that this protein
along with DevA and DevB encoded in the same operon may
be involved in the transport/export of glycolipids.
Length = 380
Score = 27.9 bits (62), Expect = 9.4
Identities = 12/47 (25%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 2 YYRIVSFIGYFFGFATYS--ILGAILGASIYIAKISQNLPDYAALNS 46
Y+ + IG+ F T I+G ++ I +++ +L +YA L +
Sbjct: 250 YWASSTAIGFIFTLGTIMGFIVGTVIVYQILYTEVADHLSEYATLKA 296
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.318 0.135 0.394
Gapped
Lambda K H
0.267 0.0822 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 13,761,542
Number of extensions: 929297
Number of successful extensions: 1876
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1824
Number of HSP's successfully gapped: 43
Length of query: 817
Length of database: 5,994,473
Length adjustment: 101
Effective length of query: 716
Effective length of database: 3,812,065
Effective search space: 2729438540
Effective search space used: 2729438540
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (27.1 bits)