RPSBLAST alignment of GI: 254780752 and protein with PDBid: 3oc2
>3oc2_A Penicillin-binding protein 3; structu genomics, oxford protein production facility, OPPF, transpe cell WALL biosynthesis; 1.97A {Pseudomonas aeruginosa} PDB: 3ocl_A* 3ocn_A* Length = 564
Score = 141 bits (357), Expect = 4e-34
Identities = 72/397 (18%), Positives = 124/397 (31%), Gaps = 43/397 (10%)
Query: 390 IIEADSMRWVYNKEQTTEETSENRNVLSLGDVIYVEHINEGWR--LRQIPKVQGGLIAMD 447
+ D V Q T+ + + D+ + R L + G L+ MD
Sbjct: 179 QVLKDRRGRVIKDVQVTKNAKPGKTLALSIDLRLQYLAHRELRNALLENGAKAGSLVIMD 238
Query: 448 PRTGRILATIGGFSY---------SQSEFNRSTQAMRQPGSCFKPIVYAAALDSGYTPAS 498
+TG ILA +Y + NR+ + +PGS KP +AAL SG S
Sbjct: 239 VKTGEILAMTNQPTYNPNNRRNLQPAAMRNRAMIDVFEPGSTVKPFSMSAALASGRWKPS 298
Query: 499 VIMDAPIEVVSRGKIWKPENYSKNFSGASTLRFGLEKSRNLMTVRLAHNMGMTVVADYAE 558
I+D + G S L L KS N+ ++A ++G + +
Sbjct: 299 DIVDVYPGTLQIG--RYTIRDVSRNSRQLDLTGILIKSSNVGISKIAFDIGAESIYSVMQ 356
Query: 559 NFGIYDKMLPVLPMSLGAGETTVLRMVSAYAVFANGGKQIRPSFIDRIQNRYGKTIFNQE 618
G+ P + A G + + I + N
Sbjct: 357 QVGLGQDTGLGFPGERVGNLPNHRKWPKAETATLAYGYGLSVTAIQLAHAYA--ALANDG 414
Query: 619 QRICDDCNYDTWNGQDEPEIIDKREQVLDPMTAYQITSMLEGVIKHGTATGKVRL-NRPV 677
+ + I P A + ML+ V++ + ++
Sbjct: 415 KSVPLSMTRVDRVPDGVQVI--------SPEVASTVQGMLQQVVEAQGGVFRAQVPGYHA 466
Query: 678 AGKTGT-----------TSSYRDTWFIGYTPT----LVVGVYVGYDIPAPLNNHATGSTL 722
AGK+GT + + F G+ P + + V + P G +
Sbjct: 467 AGKSGTARKVSVGTKGYRENAYRSLFAGFAPATDPRIAMVVVIDE----PSKAGYFGGLV 522
Query: 723 TAPIFNAFMKEALKNIPSSRFVAPPGMSLIPINKWTG 759
+AP+F+ M AL+ + P +N
Sbjct: 523 SAPVFSKVMAGALRLMNVPPDNLPTATEQQQVNAAPA 559