BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780752|ref|YP_003065165.1| penicillin binding
peptidoglycan synthetase protein [Candidatus Liberibacter asiaticus
str. psy62]
(817 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780752|ref|YP_003065165.1| penicillin binding peptidoglycan synthetase protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 817
Score = 1690 bits (4377), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 817/817 (100%), Positives = 817/817 (100%)
Query: 1 MYYRIVSFIGYFFGFATYSILGAILGASIYIAKISQNLPDYAALNSYSPAVTTRIHAGNG 60
MYYRIVSFIGYFFGFATYSILGAILGASIYIAKISQNLPDYAALNSYSPAVTTRIHAGNG
Sbjct: 1 MYYRIVSFIGYFFGFATYSILGAILGASIYIAKISQNLPDYAALNSYSPAVTTRIHAGNG 60
Query: 61 ALMAEYARENRLFLPIQIIPSHVKYAFVSAEDKNFYYHSGVDIFGIMRAVLHNIRNISHG 120
ALMAEYARENRLFLPIQIIPSHVKYAFVSAEDKNFYYHSGVDIFGIMRAVLHNIRNISHG
Sbjct: 61 ALMAEYARENRLFLPIQIIPSHVKYAFVSAEDKNFYYHSGVDIFGIMRAVLHNIRNISHG 120
Query: 121 RRPEGASTITQQVAKNFLLTSNQTMDRKIKEILLSFRLEKAYDKEKILEFYLNEIFFGFN 180
RRPEGASTITQQVAKNFLLTSNQTMDRKIKEILLSFRLEKAYDKEKILEFYLNEIFFGFN
Sbjct: 121 RRPEGASTITQQVAKNFLLTSNQTMDRKIKEILLSFRLEKAYDKEKILEFYLNEIFFGFN 180
Query: 181 SYGIASAALTYFNKSVSELTIEEAAYLAALPKGPSNYDPFRKNKAAIARRNWVIDRMEEN 240
SYGIASAALTYFNKSVSELTIEEAAYLAALPKGPSNYDPFRKNKAAIARRNWVIDRMEEN
Sbjct: 181 SYGIASAALTYFNKSVSELTIEEAAYLAALPKGPSNYDPFRKNKAAIARRNWVIDRMEEN 240
Query: 241 GYISQEQALVAKQKPLKITIKQRRSHLFGSEYFAEEVRRQLIDRYGEKALYEDGLSIRTS 300
GYISQEQALVAKQKPLKITIKQRRSHLFGSEYFAEEVRRQLIDRYGEKALYEDGLSIRTS
Sbjct: 241 GYISQEQALVAKQKPLKITIKQRRSHLFGSEYFAEEVRRQLIDRYGEKALYEDGLSIRTS 300
Query: 301 LDPQLQLYARKALQNGLINYDQNDGFRGPIKRIDLKKDWGNTLASIPTLYDVPEWDIAVV 360
LDPQLQLYARKALQNGLINYDQNDGFRGPIKRIDLKKDWGNTLASIPTLYDVPEWDIAVV
Sbjct: 301 LDPQLQLYARKALQNGLINYDQNDGFRGPIKRIDLKKDWGNTLASIPTLYDVPEWDIAVV 360
Query: 361 LEVSNSHITIGIRPTIDSNGKVTTERKKGIIEADSMRWVYNKEQTTEETSENRNVLSLGD 420
LEVSNSHITIGIRPTIDSNGKVTTERKKGIIEADSMRWVYNKEQTTEETSENRNVLSLGD
Sbjct: 361 LEVSNSHITIGIRPTIDSNGKVTTERKKGIIEADSMRWVYNKEQTTEETSENRNVLSLGD 420
Query: 421 VIYVEHINEGWRLRQIPKVQGGLIAMDPRTGRILATIGGFSYSQSEFNRSTQAMRQPGSC 480
VIYVEHINEGWRLRQIPKVQGGLIAMDPRTGRILATIGGFSYSQSEFNRSTQAMRQPGSC
Sbjct: 421 VIYVEHINEGWRLRQIPKVQGGLIAMDPRTGRILATIGGFSYSQSEFNRSTQAMRQPGSC 480
Query: 481 FKPIVYAAALDSGYTPASVIMDAPIEVVSRGKIWKPENYSKNFSGASTLRFGLEKSRNLM 540
FKPIVYAAALDSGYTPASVIMDAPIEVVSRGKIWKPENYSKNFSGASTLRFGLEKSRNLM
Sbjct: 481 FKPIVYAAALDSGYTPASVIMDAPIEVVSRGKIWKPENYSKNFSGASTLRFGLEKSRNLM 540
Query: 541 TVRLAHNMGMTVVADYAENFGIYDKMLPVLPMSLGAGETTVLRMVSAYAVFANGGKQIRP 600
TVRLAHNMGMTVVADYAENFGIYDKMLPVLPMSLGAGETTVLRMVSAYAVFANGGKQIRP
Sbjct: 541 TVRLAHNMGMTVVADYAENFGIYDKMLPVLPMSLGAGETTVLRMVSAYAVFANGGKQIRP 600
Query: 601 SFIDRIQNRYGKTIFNQEQRICDDCNYDTWNGQDEPEIIDKREQVLDPMTAYQITSMLEG 660
SFIDRIQNRYGKTIFNQEQRICDDCNYDTWNGQDEPEIIDKREQVLDPMTAYQITSMLEG
Sbjct: 601 SFIDRIQNRYGKTIFNQEQRICDDCNYDTWNGQDEPEIIDKREQVLDPMTAYQITSMLEG 660
Query: 661 VIKHGTATGKVRLNRPVAGKTGTTSSYRDTWFIGYTPTLVVGVYVGYDIPAPLNNHATGS 720
VIKHGTATGKVRLNRPVAGKTGTTSSYRDTWFIGYTPTLVVGVYVGYDIPAPLNNHATGS
Sbjct: 661 VIKHGTATGKVRLNRPVAGKTGTTSSYRDTWFIGYTPTLVVGVYVGYDIPAPLNNHATGS 720
Query: 721 TLTAPIFNAFMKEALKNIPSSRFVAPPGMSLIPINKWTGMLSKKGDPDTIIEAFKPGTGP 780
TLTAPIFNAFMKEALKNIPSSRFVAPPGMSLIPINKWTGMLSKKGDPDTIIEAFKPGTGP
Sbjct: 721 TLTAPIFNAFMKEALKNIPSSRFVAPPGMSLIPINKWTGMLSKKGDPDTIIEAFKPGTGP 780
Query: 781 AETYTVIDEDSNVSSEEILRRSPQANQAINSGSGGLY 817
AETYTVIDEDSNVSSEEILRRSPQANQAINSGSGGLY
Sbjct: 781 AETYTVIDEDSNVSSEEILRRSPQANQAINSGSGGLY 817
>gi|254781103|ref|YP_003065516.1| penicillin-binding transmembrane protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 598
Score = 38.9 bits (89), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/198 (24%), Positives = 79/198 (39%), Gaps = 43/198 (21%)
Query: 442 GLIAMDPRTGRILATIGGFSYSQSE---------FNRSTQAMRQPGSCFKPIVYAAALDS 492
G + ++ TG +++ + Y E FNR + + + GS FK A +DS
Sbjct: 285 GTVILNVSTGEVISMVSIPDYDPHEAFKGKKEGWFNRISYGIFEMGSIFKVFTIAMGIDS 344
Query: 493 GYTPASVIMDA--PIEVVSRGKI----WKPENYSKNFSGASTLRFGLEKSRNLMTVRLAH 546
G + D PI+V GK + P+N + + R+ S N+ ++A
Sbjct: 345 GLFTVKDLFDTRNPIKV---GKHVIHDYHPQN--RILTIPEIFRY----SSNIGAAQIAD 395
Query: 547 NMGMTVVADYAENFGIYDKMLPVLP------------------MSLGAG-ETTVLRMVSA 587
MG+ ++ G+ K+ LP +S G G TT L+ A
Sbjct: 396 AMGIQGHKEFLYRLGLLSKLETELPEIQAPSYPSQWKRIHSLTISFGHGLSTTPLQTAVA 455
Query: 588 YAVFANGGKQIRPSFIDR 605
A N G+ I P+F+ R
Sbjct: 456 AAALINEGRLIPPTFMIR 473
>gi|254780746|ref|YP_003065159.1| hypothetical protein CLIBASIA_03165 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 215
Score = 29.3 bits (64), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 38/69 (55%), Gaps = 10/69 (14%)
Query: 2 YYRIVSFIGYFFGFATYSILGAILGAS-IYIAKISQNLPDYAALNSYSPAVTTRIHAGNG 60
+ R + F+ +FF FAT +I+G L +S I I+ S++ D L + P + +
Sbjct: 20 HVRFIQFLKFFFPFATVTIVGWFLLSSWIRISTFSKSSID---LLDFEPMIMKKF----- 71
Query: 61 ALMAEYARE 69
++++Y+++
Sbjct: 72 -ILSDYSKD 79
>gi|254780945|ref|YP_003065358.1| ATP-dependent DNA helicase RecG [Candidatus Liberibacter asiaticus
str. psy62]
Length = 700
Score = 25.8 bits (55), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 24/44 (54%)
Query: 551 TVVADYAENFGIYDKMLPVLPMSLGAGETTVLRMVSAYAVFANG 594
+ + D ++ ++ML +L +G+G+T V + A AV A G
Sbjct: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322
>gi|254780493|ref|YP_003064906.1| phosphoribosylaminoimidazole-succinocarboxamide synthase
[Candidatus Liberibacter asiaticus str. psy62]
Length = 323
Score = 24.6 bits (52), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 34/86 (39%), Gaps = 6/86 (6%)
Query: 461 SYSQSEFNRSTQAMRQPGSCFKPIVYAAALDSGYTPASVIMDAPIEVVSRGKIWKPENYS 520
SY+ S F R + + G Y +D ++I+ I + W+ E Y
Sbjct: 179 SYALSLFERGCKLALENGLILVDSKYEFGIDKK---QNIILADEIHTPDSSRYWEVETYE 235
Query: 521 KNFSGASTLRFGLEKS--RNLMTVRL 544
K+F T GL+K RN + R
Sbjct: 236 KSFREGIT-PIGLDKDFIRNWILTRC 260
>gi|254780454|ref|YP_003064867.1| DNA polymerase III subunit beta [Candidatus Liberibacter asiaticus
str. psy62]
Length = 385
Score = 24.6 bits (52), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 4/62 (6%)
Query: 168 LEFYLNEIFFGFNSYGIASAALTYFNKSVSELTIEEAAYLAALPKGPSNYDPFRKNKAAI 227
+ +YLN IFF N + A+ L + E +A + K PS P RK I
Sbjct: 153 IRYYLNGIFFHINEEDLKLCAVA---TDGHRLAVAEVDIVAQIAKMPSIIVP-RKAVGEI 208
Query: 228 AR 229
R
Sbjct: 209 LR 210
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.318 0.135 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 519,762
Number of Sequences: 1233
Number of extensions: 22244
Number of successful extensions: 61
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 56
Number of HSP's gapped (non-prelim): 8
length of query: 817
length of database: 328,796
effective HSP length: 82
effective length of query: 735
effective length of database: 227,690
effective search space: 167352150
effective search space used: 167352150
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 42 (20.8 bits)