HHsearch alignment for GI: 254780753 and conserved domain: COG0216

>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis].
Probab=100.00  E-value=0  Score=898.47  Aligned_cols=337  Identities=38%  Similarity=0.563  Sum_probs=320.1

Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf             89999999999998708660025899999999998899999999999999863999998631000000234566765557
Q gi|254780753|r   16 WDNAVQRLSFLNTKTEDPHLWQNVIEAKMLMRERQHLDNAISFIKEIQDRLCDNLILLELALEEDDCSILQETSDNLQRI   95 (355)
Q Consensus        16 le~~~~rl~eLE~~lsdp~fW~D~~kAqkl~KE~s~L~~iV~~~~~l~~~l~Dl~eL~ELa~ee~D~el~eE~~~el~~l   95 (355)
T Consensus         9 l~~~~~r~~el~~~L~~p~v~~d~~~~~~lske~a~l~~iv~~~~~~~~~~~~l~~a~~~l~~~~D~em~ema~~Ei~~~   88 (363)
T COG0216           9 LESLLERYEELEALLSDPEVISDPDEYRKLSKEYAELEPIVEKYREYKKAQEDLEDAKEMLAEEKDPEMREMAEEEIKEL   88 (363)
T ss_pred             HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf             99999999999998539633369999999999998888999999999999999999999983568878999999999999


Q ss_pred             HHHHHHH----HHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEE
Q ss_conf             7401589----988763034576624899821778702778999999989999877531134442054545850134688
Q gi|254780753|r   96 KLEVEYK----QFESLLSGEADSNDAYLEVHAGAGGTESQDWANMLLRMYTRWAEKRKFKTEALEIHDGEEAGIKSATLL  171 (355)
Q Consensus        96 ~~~le~L----E~~~Lls~e~D~~nailEI~AGaGG~EA~dwA~~L~rMY~r~ae~~gwk~evi~~~~~e~~GiK~~~~~  171 (355)
T Consensus        89 ~~~~~~le~~L~~lLlPkDpnd~knvilEIRagtGGdEAalFagDLfrMY~rYAe~kgWk~ei~s~se~~~GG~kEii~~  168 (363)
T COG0216          89 EAKIEELEEELKILLLPKDPNDDKNIILEIRAGTGGDEAALFAGDLFRMYSRYAESKGWKVEILSASESELGGYKEIIAS  168 (363)
T ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEEE
T ss_conf             99899999999986289998877776899706888159999999999999999975798799941586667880489999


Q ss_pred             EECCCCCHHHEEECCEEEEEEECCCCCCCEEEEEEEEEEECCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCEEEE
Q ss_conf             50556100000101206898730466665035668878850344222111234550369985388865544273100358
Q gi|254780753|r  172 IKGPNAYGWLKGEQGVHRLVRISPYDSNSRRHTSFSSIWVYPVVDDSIEIEISESDCRIDTYRASGAGGQHVNTTDSAVR  251 (355)
Q Consensus       172 I~G~~ayg~Lk~E~GvHRv~Ri~~~~s~gR~hTS~a~V~V~P~~~~~~~i~i~~~dl~i~~~rssg~ggq~vn~t~savr  251 (355)
T Consensus       169 I~G~gvys~LKfEsGvHRVQRVP~TEsqGRIHTStaTVaVlPE~ee~~ei~I~~~DlrIDt~RsSGaGGQhVNtTdSAVR  248 (363)
T COG0216         169 ISGKGVYSRLKFESGVHRVQRVPATESQGRIHTSAATVAVLPEVEEVEEIEINPKDLRIDTFRSSGAGGQHVNTTDSAVR  248 (363)
T ss_pred             EECCCHHHHHHHCCCCCCEECCCCCCCCCCEEECCEEEEECCCCCCCCCCCCCHHHCEEEEEECCCCCCCCCCCCCHHHE
T ss_conf             84365455410315765221066655788314000168862787753346447788347655437898887665131101


Q ss_pred             EEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---CCCCEEEEECCCCCCCCCCCC
Q ss_conf             87469747766555552246799999999999999999999999999874133233---222101301585683311114
Q gi|254780753|r  252 ITHIPTGVVVQCQQERSQHKNKAQAWNMLRAKLYELELQKREEIANIGESSKTEIG---WGRQIRSYVLQPYQMVKDLRT  328 (355)
Q Consensus       252 i~H~ptgi~v~~q~~rsq~~Nk~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~---~g~~iRtY~~~p~~~v~DhR~  328 (355)
T Consensus       249 iTHlPTGIvV~cQderSQ~kNk~kAmkvL~ARl~~~~~~~~~~~~~~~--RksqVGSGDRSErIRTYNf-PQnRVTDHRI  325 (363)
T COG0216         249 ITHLPTGIVVECQDERSQHKNKAKAMKVLRARLYDAERQKAQAEEASE--RKSQVGSGDRSERIRTYNF-PQNRVTDHRI  325 (363)
T ss_pred             EEECCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHCCCCCHHHHHHCCCC-CCCCCCCHHC
T ss_conf             431477369984462456651999999999999999999999999988--8873377742542103578-8776510103


Q ss_pred             CCEECCHHHHHCC-CHHHHHHHHHHCCC
Q ss_conf             7250797787189-77999999972259
Q gi|254780753|r  329 NIEKTSPSDVLDG-DLDDFMKATLAIKK  355 (355)
Q Consensus       329 ~~~~~~~~~vl~G-~ld~~i~a~l~~~~  355 (355)
T Consensus       326 ~lTl~kLd~vm~gG~LDeii~aLi~~~q  353 (363)
T COG0216         326 NLTLYKLDEVMEGGKLDEIIDALIAEDQ  353 (363)
T ss_pred             CCCCCCHHHHHCCCCHHHHHHHHHHHHH
T ss_conf             6610458888646857899999999999