HHsearch alignment for GI: 254780753 and conserved domain: COG1186

>COG1186 PrfB Protein chain release factor B [Translation, ribosomal structure and biogenesis].
Probab=100.00  E-value=0  Score=636.24  Aligned_cols=238  Identities=68%  Similarity=1.044  Sum_probs=235.3

Q ss_pred             EEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCHHHEEECCEEEEEEECCC
Q ss_conf             48998217787027789999999899998775311344420545458501346885055610000010120689873046
Q gi|254780753|r  117 AYLEVHAGAGGTESQDWANMLLRMYTRWAEKRKFKTEALEIHDGEEAGIKSATLLIKGPNAYGWLKGEQGVHRLVRISPY  196 (355)
Q Consensus       117 ailEI~AGaGG~EA~dwA~~L~rMY~r~ae~~gwk~evi~~~~~e~~GiK~~~~~I~G~~ayg~Lk~E~GvHRv~Ri~~~  196 (355)
T Consensus         1 ~~l~i~~g~gg~e~~dw~~~l~rmy~r~a~~~g~~~e~l~~~~g~~~g~ks~~~~~~g~~a~g~~~~e~g~hrlvr~Spf   80 (239)
T COG1186           1 AYLTIHAGAGGTEAQDWASMLLRMYTRWAERKGFKVEVLDTSDGEEAGIKSATLKIKGENAYGYLKTETGVHRLVRISPF   80 (239)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEEEEECHHHHHHHHHHCCEEEEEEECCC
T ss_conf             97997279885588999999999999999875985899860477304510379999646888888763254677850687


Q ss_pred             CCCCEEEEEEEEEEECCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             66650356688788503442221112345503699853888655442731003588746974776655555224679999
Q gi|254780753|r  197 DSNSRRHTSFSSIWVYPVVDDSIEIEISESDCRIDTYRASGAGGQHVNTTDSAVRITHIPTGVVVQCQQERSQHKNKAQA  276 (355)
Q Consensus       197 ~s~gR~hTS~a~V~V~P~~~~~~~i~i~~~dl~i~~~rssg~ggq~vn~t~savri~H~ptgi~v~~q~~rsq~~Nk~~a  276 (355)
T Consensus        81 ~~~~~R~tsf~~v~v~p~~~~~i~i~I~~~dl~idt~RASGaGGQhVNKt~SAVrlth~ptgivv~cq~eRSq~~n~~~a  160 (239)
T COG1186          81 DSNGRRHTSFASVEVFPELDISIEIEIPDDDLRIDTYRASGAGGQHVNKTDSAVRLTHLPTGIVVLCQNERSQHLNKALA  160 (239)
T ss_pred             CCCCCCCCCEEEEEECCCCCCCCCEECCCCCEEEEEEECCCCCCCCCCCCCCCEEEEECCCCCEECCHHHHHHHHHHHHH
T ss_conf             75664155333310047777653100485216999887579998865552442899986777775188899999879999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCEECCHHHHHCCCHHHHHHHHHHCC
Q ss_conf             999999999999999999999987413323322210130158568331111472507977871897799999997225
Q gi|254780753|r  277 WNMLRAKLYELELQKREEIANIGESSKTEIGWGRQIRSYVLQPYQMVKDLRTNIEKTSPSDVLDGDLDDFMKATLAIK  354 (355)
Q Consensus       277 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~iRtY~~~p~~~v~DhR~~~~~~~~~~vl~G~ld~~i~a~l~~~  354 (355)
T Consensus       161 ~~~l~~kL~~~~~~~Rsqe~n~~~a~~k~i~wg~qirsyv~~p~~~vKd~Rt~~E~~~~~~v~dg~~~~~~~~~l~~~  238 (239)
T COG1186         161 RKMLKGKLYILAQEKRSQEKNRERALKKLIGWGNQIRSYVLDPYQPTKDLRTGVERRNKSKVLDGDKDGFIKAYLKWD  238 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHEECCHHHHHHHHHHHHHHHHHHCC
T ss_conf             998777999998898999998999876677887732126788643466532100123578764324778877554035