HHsearch alignment for GI: 254780753 and conserved domain: TIGR00019
>TIGR00019 prfA peptide chain release factor 1; InterPro: IPR004373 This family describes peptide chain release factor 1 (PrfA, RF-1), and excludes the related peptide chain release factor 2 (PrfB, RF-2). RF-1 helps recognise and terminate translation at UAA and UAG stop codons. The mitochondrial release factors are prfA-like, although not included above the trusted cut-off for this model. RF-1 does not have a translational frameshift.; GO: 0016149 translation release factor activity codon specific, 0006415 translational termination, 0005737 cytoplasm.
Probab=92.81 E-value=0.53 Score=27.94 Aligned_cols=88 Identities=19% Similarity=0.185 Sum_probs=49.9
Q ss_pred HHHHHHHHHHCC---HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 899999886549---89999999999998708660025899999999998899999999999999863999998631000
Q gi|254780753|r 4 SRQLNCLGGLFD---WDNAVQRLSFLNTKTEDPHLWQNVIEAKMLMRERQHLDNAISFIKEIQDRLCDNLILLELALEED 80 (355)
Q Consensus 4 ~~rl~~l~~~fD---le~~~~rl~eLE~~lsdp~fW~D~~kAqkl~KE~s~L~~iV~~~~~l~~~l~Dl~eL~ELa~ee~ 80 (355)
T Consensus 14 ~~~~~eL~~~L~dp~v~~d~~k~~~~~ke~~~l------~~i~~~~~~~~~~~~~~~~A~~~l~E~~~D~El~elak~E- 86 (373)
T TIGR00019 14 EERYEELEELLSDPEVISDQDKLRKLSKEYSQL------EEIVDKYEEYKKAQEDLKEAKELLEEKGDDKELRELAKEE- 86 (373)
T ss_pred HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCH------HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH-
T ss_conf 999999998506863113679999998862065------6899999999999999999999997425886589999999-
Q ss_pred CCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 0002345667655577401589
Q gi|254780753|r 81 DCSILQETSDNLQRIKLEVEYK 102 (355)
Q Consensus 81 D~el~eE~~~el~~l~~~le~L 102 (355)
T Consensus 87 ----l~~l~~~~~~LE~~Lk~L 104 (373)
T TIGR00019 87 ----LEELEKEIEELEEQLKIL 104 (373)
T ss_pred ----HHHHHHHHHHHHHHHHHH
T ss_conf ----999998888899999972