HHsearch alignment for GI: 254780753 and conserved domain: TIGR00020
>TIGR00020 prfB peptide chain release factor 2; InterPro: IPR004374 In many but not all taxa, there is a conserved real translational frameshift at a TGA codon. RF-2 helps terminate translation at TGA codons and can therefore regulate its own production by readthrough when RF-2 is insufficient. There is a superfamily IPR000352 from INTERPRO of RF-1, RF-2, mitochondrial, RF-H, etc proteins.; GO: 0016149 translation release factor activity codon specific, 0006415 translational termination, 0005737 cytoplasm.
Probab=100.00 E-value=0 Score=1152.92 Aligned_cols=353 Identities=56% Similarity=0.898 Sum_probs=350.4
Q ss_pred CHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 56899999886549899999999999987086600258999999999988999999999999998639999986310000
Q gi|254780753|r 2 KLSRQLNCLGGLFDWDNAVQRLSFLNTKTEDPHLWQNVIEAKMLMRERQHLDNAISFIKEIQDRLCDNLILLELALEEDD 81 (355)
Q Consensus 2 EL~~rl~~l~~~fDle~~~~rl~eLE~~lsdp~fW~D~~kAqkl~KE~s~L~~iV~~~~~l~~~l~Dl~eL~ELa~ee~D 81 (355)
T Consensus 13 ~L~~rl~~~~~~Ld~e~~~~rle~le~e~~dP~fW~D~~rAq~v~~e~~~l~~~l~~~~~l~~~~~dl~~L~Ela~ee~d 92 (373)
T TIGR00020 13 ELASRLDDVRGILDPEKLKARLEELEKEMEDPNFWNDQERAQKVIKERSSLEEELDTLEELKNSLDDLSELLELAKEEDD 92 (373)
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
T ss_conf 99989998775138668999999998775078666125899999999999998632799987553257889987437603
Q ss_pred C------HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 0------0234566765557740158998876303457662489982177870277899999998999987753113444
Q gi|254780753|r 82 C------SILQETSDNLQRIKLEVEYKQFESLLSGEADSNDAYLEVHAGAGGTESQDWANMLLRMYTRWAEKRKFKTEAL 155 (355)
Q Consensus 82 ~------el~eE~~~el~~l~~~le~LE~~~Lls~e~D~~nailEI~AGaGG~EA~dwA~~L~rMY~r~ae~~gwk~evi 155 (355)
T Consensus 93 ~aaasGm~~~~el~~El~~Le~~~~~lE~~~~LSgE~D~~nA~ltI~~GAGGTEa~DWa~ML~RMY~RWAE~rgykvE~l 172 (373)
T TIGR00020 93 EAAASGMETFAELEEELKALEKELEELELRTLLSGEYDANNAILTIQSGAGGTEAQDWASMLYRMYLRWAERRGYKVEIL 172 (373)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 57778999999999999999999999999997067577210633523877985166699999875357641057513563
Q ss_pred HCCCCCCCCEEEEEEEEECCCCCHHHEEECCEEEEEEECCCCCCCEEEEEEEEEEECCCCCCC-CCCCCCCCEEEEEEEC
Q ss_conf 205454585013468850556100000101206898730466665035668878850344222-1112345503699853
Q gi|254780753|r 156 EIHDGEEAGIKSATLLIKGPNAYGWLKGEQGVHRLVRISPYDSNSRRHTSFSSIWVYPVVDDS-IEIEISESDCRIDTYR 234 (355)
Q Consensus 156 ~~~~~e~~GiK~~~~~I~G~~ayg~Lk~E~GvHRv~Ri~~~~s~gR~hTS~a~V~V~P~~~~~-~~i~i~~~dl~i~~~r 234 (355)
T Consensus 173 D~~~geeAGIKSVT~~ikG~yAYG~Lk~E~GvHRLVRISPFDa~~rRHTSFasv~V~P~~Dd~tI~IeI~~~D~riD~YR 252 (373)
T TIGR00020 173 DYSEGEEAGIKSVTILIKGEYAYGYLKSEQGVHRLVRISPFDANARRHTSFASVEVMPEVDDDTIDIEIKPEDVRIDTYR 252 (373)
T ss_pred ECCCCCCCCEEEEEEEEECCCCCCCCCCCCCEEEEEEECCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCEEEEEEE
T ss_conf 12678613401589998526533302268741787750666686953322688886240357445110688754686665
Q ss_pred CCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEE
Q ss_conf 88865544273100358874697477665555522467999999999999999999999999998741332332221013
Q gi|254780753|r 235 ASGAGGQHVNTTDSAVRITHIPTGVVVQCQQERSQHKNKAQAWNMLRAKLYELELQKREEIANIGESSKTEIGWGRQIRS 314 (355)
Q Consensus 235 ssg~ggq~vn~t~savri~H~ptgi~v~~q~~rsq~~Nk~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~iRt 314 (355)
T Consensus 253 aSGAGGQhVNkTdSAVRITHiPTGiVv~CQ~eRSQ~kNK~~Amk~LKaKLYe~~~~k~~~~~~~~~~ek~eIgWG~QIRS 332 (373)
T TIGR00020 253 ASGAGGQHVNKTDSAVRITHIPTGIVVQCQNERSQHKNKDSAMKVLKAKLYELEMEKEQAEKDAKEGEKSEIGWGNQIRS 332 (373)
T ss_pred CCCCCCCCCCCCCCCEEEEEECCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCE
T ss_conf 46898974214465326544358736851273046888999999999999998889998888763024677786451000
Q ss_pred EECCCCCCCCCCCCCCEECCHHHHHCCCHHHHHHHHHHCC
Q ss_conf 0158568331111472507977871897799999997225
Q gi|254780753|r 315 YVLQPYQMVKDLRTNIEKTSPSDVLDGDLDDFMKATLAIK 354 (355)
Q Consensus 315 Y~~~p~~~v~DhR~~~~~~~~~~vl~G~ld~~i~a~l~~~ 354 (355)
T Consensus 333 YVl~PY~~vKD~Rt~~E~gNv~AVlDGdID~FiE~~Lkwk 372 (373)
T TIGR00020 333 YVLHPYQLVKDLRTNYETGNVEAVLDGDIDEFIEAYLKWK 372 (373)
T ss_pred EEECCHHHHHHCCCCCCCCCCCEEECCCHHHHHHHHHHHC
T ss_conf 0407613332201672357822575476547898887505