HHsearch alignment for GI: 254780753 and conserved domain: TIGR03072

>TIGR03072 release_prfH putative peptide chain release factor H. Members of this protein family are bacterial proteins homologous to peptide chain release factors 1 (RF-1, product of the prfA gene), and 2 (RF-2, product of the prfB gene). The member from Escherichia coli K-12, designated prfH, appears to be a pseudogene. This class I release factor is always found as the downstream gene of a two-gene operon.
Probab=100.00  E-value=0  Score=548.58  Aligned_cols=196  Identities=31%  Similarity=0.434  Sum_probs=187.6

Q ss_pred             EEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-CCEEEEEEEEECCCCCHHHEEECCEEEEEEECC
Q ss_conf             4899821778702778999999989999877531134442054545-850134688505561000001012068987304
Q gi|254780753|r  117 AYLEVHAGAGGTESQDWANMLLRMYTRWAEKRKFKTEALEIHDGEE-AGIKSATLLIKGPNAYGWLKGEQGVHRLVRISP  195 (355)
Q Consensus       117 ailEI~AGaGG~EA~dwA~~L~rMY~r~ae~~gwk~evi~~~~~e~-~GiK~~~~~I~G~~ayg~Lk~E~GvHRv~Ri~~  195 (355)
T Consensus         1 vileIraG~GG~Ea~lfa~~L~rMY~r~a~~~gwk~evi~~~~~~~~Gg~ksv~~~i~G~~~~~~~~~~~G~~~~v~~sp   80 (200)
T TIGR03072         1 ILLQLSSAQGPAECCLAVAKALERLTREAAARGVRVEVLEQEPGEVPGTLRSALVSLDGEAAAALADRWEGTLLWICPSP   80 (200)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEEEEEEEECCEEEEEEECCCEEEEEECC
T ss_conf             98999389986999999999999999999985998999857777779950899999995043078887756179996679


Q ss_pred             CCCCCEEEEEEEEEEECCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHH
Q ss_conf             66665035668878850344222111234550369985388865544273100358874697477665555522467999
Q gi|254780753|r  196 YDSNSRRHTSFSSIWVYPVVDDSIEIEISESDCRIDTYRASGAGGQHVNTTDSAVRITHIPTGVVVQCQQERSQHKNKAQ  275 (355)
Q Consensus       196 ~~s~gR~hTS~a~V~V~P~~~~~~~i~i~~~dl~i~~~rssg~ggq~vn~t~savri~H~ptgi~v~~q~~rsq~~Nk~~  275 (355)
T Consensus        81 ~~~~~~r~t~~v~v~~~~~~~-----ei~~~Dlridt~RssGaGGQhVNkT~SAVRitH~PTGi~V~~q~eRSQ~~Nk~~  155 (200)
T TIGR03072        81 YRPHHRRKNWFIGVQRFSASE-----EATEDEIRFETLRSSGPGGQHVNKTESAVRATHLASGISVKVQSERSQHANKRL  155 (200)
T ss_pred             CCCCCCEEEEEEEEEECCCCC-----CCCCHHEEEEEEECCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCHHHHHHH
T ss_conf             767786799999977516557-----888123489998736899885077563499997488479997585547999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf             999999999999999999999998741332332221013015
Q gi|254780753|r  276 AWNMLRAKLYELELQKREEIANIGESSKTEIGWGRQIRSYVL  317 (355)
Q Consensus       276 a~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~iRtY~~  317 (355)
T Consensus       156 Al~~L~arL~~~~~~~~~~~~~~r~~~~~~~~Rs~kIRTYng  197 (200)
T TIGR03072       156 ATLLLAVRLADLQQEQAAALRAERRTAHHQIERGNPVRVFKG  197 (200)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECC
T ss_conf             999999999999999999999999866798725687251279