HHsearch alignment for GI: 254780753 and conserved domain: TIGR03072
>TIGR03072 release_prfH putative peptide chain release factor H. Members of this protein family are bacterial proteins homologous to peptide chain release factors 1 (RF-1, product of the prfA gene), and 2 (RF-2, product of the prfB gene). The member from Escherichia coli K-12, designated prfH, appears to be a pseudogene. This class I release factor is always found as the downstream gene of a two-gene operon.
Probab=100.00 E-value=0 Score=548.58 Aligned_cols=196 Identities=31% Similarity=0.434 Sum_probs=187.6
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-CCEEEEEEEEECCCCCHHHEEECCEEEEEEECC
Q ss_conf 4899821778702778999999989999877531134442054545-850134688505561000001012068987304
Q gi|254780753|r 117 AYLEVHAGAGGTESQDWANMLLRMYTRWAEKRKFKTEALEIHDGEE-AGIKSATLLIKGPNAYGWLKGEQGVHRLVRISP 195 (355)
Q Consensus 117 ailEI~AGaGG~EA~dwA~~L~rMY~r~ae~~gwk~evi~~~~~e~-~GiK~~~~~I~G~~ayg~Lk~E~GvHRv~Ri~~ 195 (355)
T Consensus 1 vileIraG~GG~Ea~lfa~~L~rMY~r~a~~~gwk~evi~~~~~~~~Gg~ksv~~~i~G~~~~~~~~~~~G~~~~v~~sp 80 (200)
T TIGR03072 1 ILLQLSSAQGPAECCLAVAKALERLTREAAARGVRVEVLEQEPGEVPGTLRSALVSLDGEAAAALADRWEGTLLWICPSP 80 (200)
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEEEEEEEECCEEEEEEECCCEEEEEECC
T ss_conf 98999389986999999999999999999985998999857777779950899999995043078887756179996679
Q ss_pred CCCCCEEEEEEEEEEECCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHH
Q ss_conf 66665035668878850344222111234550369985388865544273100358874697477665555522467999
Q gi|254780753|r 196 YDSNSRRHTSFSSIWVYPVVDDSIEIEISESDCRIDTYRASGAGGQHVNTTDSAVRITHIPTGVVVQCQQERSQHKNKAQ 275 (355)
Q Consensus 196 ~~s~gR~hTS~a~V~V~P~~~~~~~i~i~~~dl~i~~~rssg~ggq~vn~t~savri~H~ptgi~v~~q~~rsq~~Nk~~ 275 (355)
T Consensus 81 ~~~~~~r~t~~v~v~~~~~~~-----ei~~~Dlridt~RssGaGGQhVNkT~SAVRitH~PTGi~V~~q~eRSQ~~Nk~~ 155 (200)
T TIGR03072 81 YRPHHRRKNWFIGVQRFSASE-----EATEDEIRFETLRSSGPGGQHVNKTESAVRATHLASGISVKVQSERSQHANKRL 155 (200)
T ss_pred CCCCCCEEEEEEEEEECCCCC-----CCCCHHEEEEEEECCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCHHHHHHH
T ss_conf 767786799999977516557-----888123489998736899885077563499997488479997585547999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 999999999999999999999998741332332221013015
Q gi|254780753|r 276 AWNMLRAKLYELELQKREEIANIGESSKTEIGWGRQIRSYVL 317 (355)
Q Consensus 276 a~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~iRtY~~ 317 (355)
T Consensus 156 Al~~L~arL~~~~~~~~~~~~~~r~~~~~~~~Rs~kIRTYng 197 (200)
T TIGR03072 156 ATLLLAVRLADLQQEQAAALRAERRTAHHQIERGNPVRVFKG 197 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECC
T ss_conf 999999999999999999999999866798725687251279