HHsearch alignment for GI: 254780753 and conserved domain: pfam00472

>pfam00472 RF-1 RF-1 domain. This domain is found in peptide chain release factors such as RF-1 and RF-2, and a number of smaller proteins of unknown function. This domain contains the peptidyl-tRNA hydrolase activity. The domain contains a highly conserved motif GGQ, where the glutamine is thought to coordinate the water that mediates the hydrolysis.
Probab=100.00  E-value=3.3e-36  Score=279.47  Aligned_cols=111  Identities=55%  Similarity=0.825  Sum_probs=103.5

Q ss_pred             CCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             22211123455036998538886554427310035887469747766555552246799999999999999999999999
Q gi|254780753|r  216 DDSIEIEISESDCRIDTYRASGAGGQHVNTTDSAVRITHIPTGVVVQCQQERSQHKNKAQAWNMLRAKLYELELQKREEI  295 (355)
Q Consensus       216 ~~~~~i~i~~~dl~i~~~rssg~ggq~vn~t~savri~H~ptgi~v~~q~~rsq~~Nk~~a~~~l~~~l~~~~~~~~~~~  295 (355)
T Consensus         3 ~~~~~i~i~~~dl~~~~~RssGpGGQ~VNKt~saV~l~h~ptgi~v~~q~~RSq~~Nr~~A~~~L~~~l~~~~~~k~~~~   82 (114)
T pfam00472         3 DEEVEIEIPPSDLRIDTFRSSGPGGQNVNKTESAVRLTHLPTGIVVKCQEERSQHKNREKALERLKAKLYEAELQKKREE   82 (114)
T ss_pred             CCCCCEECCHHHEEEEEEECCCCCCCCCCHHHEEEEEEECCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             88511141879948998887898656547204158999847648999707788899999999999999999988899999


Q ss_pred             HHHHHHHH-HHCCCCCCEEEEECCCCCCCCCCC
Q ss_conf             99987413-323322210130158568331111
Q gi|254780753|r  296 ANIGESSK-TEIGWGRQIRSYVLQPYQMVKDLR  327 (355)
Q Consensus       296 ~~~~~~~~-~~~~~g~~iRtY~~~p~~~v~DhR  327 (355)
T Consensus        83 ~~~~r~~~~~~~~~~~kiRtY~~-~~~~Vkd~R  114 (114)
T pfam00472        83 TKPTRKSQVRRGDRKEKIRTYNF-PQGRVKDHR  114 (114)
T ss_pred             HHHHHHHHCCCCCCCCCCCCEEC-CCCCCCCCC
T ss_conf             87998600366855466001337-877767697