Query gi|254780753|ref|YP_003065166.1| peptide chain release factor 2 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 355 No_of_seqs 271 out of 3128 Neff 6.5 Searched_HMMs 33803 Date Wed Jun 1 16:04:10 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780753.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >2b3t_B RF-1, peptide chain re 100.0 0 0 458.6 9.6 168 95-342 6-173 (173) 2 >1gqe_A Release factor 2, RF2; 100.0 0 0 436.1 14.7 161 110-354 1-161 (162) 3 >2ihr_1 Peptide chain release 100.0 0 0 437.1 13.7 160 112-355 1-160 (172) 4 >1zbt_A RF-1, peptide chain re 100.0 0 0 433.1 13.9 150 109-342 1-150 (150) 5 >1rq0_A RF-1, peptide chain re 100.0 0 0 363.3 13.6 146 114-342 2-147 (147) 6 >2jy9_A Putative tRNA hydrolas 99.9 7.6E-29 2.2E-33 226.5 0.4 116 212-329 1-148 (148) 7 >2ihr_1 Peptide chain release 99.9 1.2E-25 3.6E-30 203.5 5.0 78 222-299 1-78 (83) 8 >1gqe_A Release factor 2, RF2; 99.9 2.2E-25 6.4E-30 201.8 4.7 77 221-297 1-77 (83) 9 >3d5a_X RF1, peptide chain rel 99.9 5.5E-25 1.6E-29 198.8 6.0 86 222-309 1-86 (86) 10 >1zbt_A RF-1, peptide chain re 99.9 8.4E-25 2.5E-29 197.5 4.2 75 222-296 1-75 (83) 11 >1rq0_A RF-1, peptide chain re 99.9 9.2E-25 2.7E-29 197.3 3.6 74 222-295 1-74 (82) 12 >2b3t_B RF-1, peptide chain re 99.9 1.1E-24 3.4E-29 196.6 0.5 73 222-294 2-74 (80) 13 >1j26_A Immature colon carcino 99.8 9.6E-22 2.8E-26 175.7 4.6 83 207-289 1-108 (112) 14 >2jva_A Peptidyl-tRNA hydrolas 99.8 2.6E-19 7.7E-24 158.3 4.5 64 227-290 1-88 (95) 15 >1gqe_A Release factor 2, RF2; 99.7 5.6E-17 1.7E-21 141.6 12.8 108 2-109 13-120 (120) 16 >2ihr_1 Peptide chain release 99.6 1.8E-16 5.4E-21 137.9 1.7 106 2-111 5-110 (110) 17 >1zbt_A RF-1, peptide chain re 99.5 1.2E-14 3.6E-19 125.0 4.5 105 2-106 5-110 (116) 18 >3d5a_X RF1, peptide chain rel 99.4 1.8E-12 5.2E-17 109.5 9.2 88 13-103 1-89 (122) 19 >1rq0_A RF-1, peptide chain re 95.5 0.09 2.7E-06 33.0 7.7 81 22-114 4-86 (113) 20 >1xaw_A Occludin; coiled-coil, 85.7 1.7 5.2E-05 23.8 5.1 39 19-57 95-133 (140) 21 >2dq0_A Seryl-tRNA synthetase; 84.7 3.1 9.2E-05 22.0 9.7 91 13-103 1-96 (113) 22 >1wle_A Seryl-tRNA synthetase; 47.3 19 0.00056 16.3 9.7 55 13-67 2-59 (121) 23 >1yll_A PA5104, conserved hypo 41.9 20 0.00059 16.2 2.6 53 186-240 15-71 (95) 24 >2waq_A DNA-directed RNA polym 41.7 23 0.00068 15.8 2.9 32 125-156 48-79 (79) 25 >2vqe_I 30S ribosomal protein 38.0 16 0.00048 16.8 1.6 29 197-228 5-33 (128) 26 >1rxw_A Flap structure-specifi 37.4 24 0.0007 15.7 2.4 36 38-73 24-59 (68) 27 >2spc_A Spectrin; cytoskeleton 37.3 27 0.00079 15.3 6.7 61 15-75 11-72 (107) 28 >2zkq_i 40S ribosomal protein 34.2 17 0.0005 16.7 1.2 29 197-228 11-39 (146) 29 >3i1m_I 30S ribosomal protein 33.9 27 0.00079 15.3 2.2 30 196-228 6-35 (130) 30 >1gax_A Valrs, valyl-tRNA synt 33.0 31 0.00092 14.8 5.0 22 16-37 106-127 (159) 31 >2o1e_A YCDH; alpha-beta prote 32.5 32 0.00094 14.8 7.5 21 31-51 130-150 (218) 32 >1fpo_A HSC20, chaperone prote 29.7 35 0.001 14.4 5.4 66 1-66 15-87 (90) 33 >3bbn_I Ribosomal protein S9; 29.6 27 0.00079 15.3 1.6 28 198-228 74-101 (197) 34 >3jyv_I 40S ribosomal protein 29.6 24 0.0007 15.7 1.3 28 197-227 3-30 (138) 35 >1k0r_A NUSA; two component ar 29.4 8.1 0.00024 19.0 -1.1 35 209-247 19-53 (86) 36 >1hh2_P NUSA, N utilization su 27.1 8.4 0.00025 18.9 -1.3 34 209-246 19-52 (68) 37 >3cx3_A Lipoprotein; zinc-bind 26.5 40 0.0012 14.1 7.9 25 28-52 114-138 (199) 38 >2prs_A High-affinity zinc upt 25.5 41 0.0012 13.9 6.7 27 25-51 108-134 (172) 39 >1a76_A Flap endonuclease-1 pr 25.5 41 0.0012 13.9 2.1 30 38-67 25-54 (65) 40 >2pih_A Protein YMCA; regulate 25.3 42 0.0012 13.9 7.9 51 14-64 4-54 (151) 41 >2z9v_A Aspartate aminotransfe 25.1 42 0.0012 13.9 6.0 113 26-139 24-149 (216) 42 >3bbo_I Ribosomal protein L6; 25.0 29 0.00087 15.0 1.1 47 215-266 53-100 (123) 43 >2asb_A Transcription elongati 24.5 11 0.00033 18.0 -1.1 25 218-246 28-52 (94) 44 >1v33_A DNA primase small subu 24.5 23 0.00067 15.8 0.5 92 109-211 99-204 (220) 45 >1m0d_A Endonuclease, endodeox 24.5 29 0.00086 15.0 1.0 14 140-153 66-79 (107) 46 >3cbl_A C-FES, proto-oncogene 24.1 27 0.00079 15.3 0.8 49 223-278 2-58 (85) 47 >1e85_A Cytochrome C'; electro 23.5 45 0.0013 13.7 6.2 48 3-50 19-87 (127) 48 >1s35_A Beta-I spectrin, spect 23.0 46 0.0014 13.6 10.2 60 15-74 8-68 (120) 49 >2jya_A AGR_C_3324P, uncharact 22.6 23 0.00068 15.8 0.2 14 143-156 66-79 (106) 50 >1u5p_A Spectrin alpha chain, 22.5 47 0.0014 13.6 11.0 57 15-71 11-67 (133) 51 >2yvk_A Methylthioribose-1-pho 21.8 35 0.001 14.5 1.0 50 114-163 172-221 (374) 52 >1qys_A TOP7; alpha-beta, nove 21.6 49 0.0014 13.4 6.7 61 94-177 28-88 (106) 53 >3cnf_A VP1; cytoplasmic polyh 21.5 24 0.00072 15.6 0.2 46 222-269 9-54 (148) 54 >3jzy_A Intersectin 2; C2 doma 20.8 24 0.00071 15.6 0.0 65 133-197 111-176 (510) No 1 >>2b3t_B RF-1, peptide chain release factor 1; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} (B:84-214,B:295-336) Probab=100.00 E-value=0 Score=458.62 Aligned_cols=168 Identities=33% Similarity=0.481 Sum_probs=152.9 Q ss_pred HHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEC Q ss_conf 77401589988763034576624899821778702778999999989999877531134442054545850134688505 Q gi|254780753|r 95 IKLEVEYKQFESLLSGEADSNDAYLEVHAGAGGTESQDWANMLLRMYTRWAEKRKFKTEALEIHDGEEAGIKSATLLIKG 174 (355) Q Consensus 95 l~~~le~LE~~~Lls~e~D~~nailEI~AGaGG~EA~dwA~~L~rMY~r~ae~~gwk~evi~~~~~e~~GiK~~~~~I~G 174 (355) +....++|++.+||++|+|.+||+|||+||+||+||+|||+||||||++||+++||++++++.++++.||||+|++.|+| T Consensus 6 ~~~l~~~l~~~ll~~~~~D~~~a~leI~aG~GG~EA~~fa~~L~~MY~~~a~~~g~k~ev~~~~~~~~~G~k~~~~~I~G 85 (173) T 2b3t_B 6 SEQLEQQLQVLLLPKDPDDERNAFLEVRAGTGGDEAALFAGDLFRMYSRYAEARRWRVEIMSASEGEHGGYKEIIAKISG 85 (173) T ss_dssp ------CCCCCCCSCCSGGGSCEEEEEEECSSSHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSEEEEEEEECS T ss_pred HHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCEEEEEEEEEC T ss_conf 55899999998623443554554899962677678999999999999999987498510022256567771489999976 Q ss_pred CCCCHHHEEECCEEEEEEECCCCCCCEEEEEEEEEEECCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCEEEEEEE Q ss_conf 56100000101206898730466665035668878850344222111234550369985388865544273100358874 Q gi|254780753|r 175 PNAYGWLKGEQGVHRLVRISPYDSNSRRHTSFSSIWVYPVVDDSIEIEISESDCRIDTYRASGAGGQHVNTTDSAVRITH 254 (355) Q Consensus 175 ~~ayg~Lk~E~GvHRv~Ri~~~~s~gR~hTS~a~V~V~P~~~~~~~i~i~~~dl~i~~~rssg~ggq~vn~t~savri~H 254 (355) +||||+||+|+|||||||||||+++||+|||||+|+|+|+++| +++ . T Consensus 86 ~~aY~~Lk~E~GvHRvqRvp~te~~gR~hTStasV~VlP~~~d-~~~--k------------------------------ 132 (173) T 2b3t_B 86 DGVYGRLKFESGGHRVQRVPATESQGRIHTSACTVAVMPELPD-AEL--R------------------------------ 132 (173) T ss_dssp SSCHHHHGGGCEEEEEEECCTTCSSCCCEEEEEEEECCBCCCT-TTC--C------------------------------ T ss_pred CCCCCEEEEEECCEEEEEECCCCCCCCCCEEEEEEEECCCCCC-CCC--H------------------------------ T ss_conf 7744234664123389972476434530202456621001332-123--6------------------------------ Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCEECC Q ss_conf 69747766555552246799999999999999999999999999874133233222101301585683311114725079 Q gi|254780753|r 255 IPTGVVVQCQQERSQHKNKAQAWNMLRAKLYELELQKREEIANIGESSKTEIGWGRQIRSYVLQPYQMVKDLRTNIEKTS 334 (355) Q Consensus 255 ~ptgi~v~~q~~rsq~~Nk~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~iRtY~~~p~~~v~DhR~~~~~~~ 334 (355) | +.+..+|++||||||| ||+||||||+|++++| T Consensus 133 -------------~---------------------------------qvgs~dRsekIRTYNf-~q~rvtDHRi~~~~~~ 165 (173) T 2b3t_B 133 -------------N---------------------------------LLGSGDRSDRNRTYNF-PQGRVTDHRINLTLYR 165 (173) T ss_dssp -------------C----------------------------------------CCEEEEEET-TTTEEEEGGGTEEESC T ss_pred -------------H---------------------------------HCCCCCCCCCEEEEEC-CCCCCCEECCCCEECC T ss_conf -------------0---------------------------------0410014385476616-9886210045886778 Q ss_pred HHHHHCCC Q ss_conf 77871897 Q gi|254780753|r 335 PSDVLDGD 342 (355) Q Consensus 335 ~~~vl~G~ 342 (355) |+.||+|+ T Consensus 166 l~~~l~Ge 173 (173) T 2b3t_B 166 LDEVMEGK 173 (173) T ss_dssp HHHHHHTC T ss_pred HHHHHCCC T ss_conf 44764987 No 2 >>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} (A:121-231,A:315-365) Probab=100.00 E-value=0 Score=436.08 Aligned_cols=161 Identities=61% Similarity=1.023 Sum_probs=154.9 Q ss_pred CCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCHHHEEECCEEE Q ss_conf 34576624899821778702778999999989999877531134442054545850134688505561000001012068 Q gi|254780753|r 110 GEADSNDAYLEVHAGAGGTESQDWANMLLRMYTRWAEKRKFKTEALEIHDGEEAGIKSATLLIKGPNAYGWLKGEQGVHR 189 (355) Q Consensus 110 ~e~D~~nailEI~AGaGG~EA~dwA~~L~rMY~r~ae~~gwk~evi~~~~~e~~GiK~~~~~I~G~~ayg~Lk~E~GvHR 189 (355) ||+|.+||+|||+||+||+||++||++||+||++||+++||++++++.++++.+|||+|++.|+|++||++||+|+|||| T Consensus 1 g~~D~~~~ileI~aG~GG~Ea~~fa~~Ll~mY~~~a~~~g~~~evi~~~~~~~~G~ksv~~~i~G~~ay~~lk~E~GvHr 80 (162) T 1gqe_A 1 GEYDSADCYLDIQAGSGGTEAQDWASXLERXYLRWAESRGFKTEIIEESEGEVAGIKSVTIKISGDYAYGWLRTETGVHR 80 (162) T ss_dssp STTTTSCEEEEEEECSSHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECSSSSEEEEEEEEESTTHHHHHGGGCEEEE T ss_pred CCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCEEEEECCCCCHHHHCCCCCCCEE T ss_conf 96555671599970797699999999999999999998698799867777653555236763147654321110466135 Q ss_pred EEEECCCCCCCEEEEEEEEEEECCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHH Q ss_conf 98730466665035668878850344222111234550369985388865544273100358874697477665555522 Q gi|254780753|r 190 LVRISPYDSNSRRHTSFSSIWVYPVVDDSIEIEISESDCRIDTYRASGAGGQHVNTTDSAVRITHIPTGVVVQCQQERSQ 269 (355) Q Consensus 190 v~Ri~~~~s~gR~hTS~a~V~V~P~~~~~~~i~i~~~dl~i~~~rssg~ggq~vn~t~savri~H~ptgi~v~~q~~rsq 269 (355) |||+|||+++||||||||+|+|+|++++..+ T Consensus 81 v~r~s~~~~~~rr~Ts~a~V~VlP~~~e~~~------------------------------------------------- 111 (162) T 1gqe_A 81 LVRKSPFDSGGRRHTSFSSAFVYPEVDDDID------------------------------------------------- 111 (162) T ss_dssp EEEECTTSSSCCEEEEEEEEEEEECCBTTBC------------------------------------------------- T ss_pred EEECCCCCCCCCEEEEEEEEEEECCCCCCCC------------------------------------------------- T ss_conf 6644898888847876667888568887653------------------------------------------------- Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCEECCHHHHHCCCHHHHHHH Q ss_conf 46799999999999999999999999999874133233222101301585683311114725079778718977999999 Q gi|254780753|r 270 HKNKAQAWNMLRAKLYELELQKREEIANIGESSKTEIGWGRQIRSYVLQPYQMVKDLRTNIEKTSPSDVLDGDLDDFMKA 349 (355) Q Consensus 270 ~~Nk~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~iRtY~~~p~~~v~DhR~~~~~~~~~~vl~G~ld~~i~a 349 (355) .+++||+||||||| ||+||||||||++++|+++||+|+||+||+| T Consensus 112 ----------------------------------~~~~~~~~iRtY~~-~~~rv~DhR~~~~~~~~~~vl~G~l~~~i~~ 156 (162) T 1gqe_A 112 ----------------------------------SDIGWGSQIRSYVL-DDSRIKDLRTGVETRNTQAVLDGSLDQFIEA 156 (162) T ss_dssp ----------------------------------CCCCSCSEEEEEEG-GGTEEEETTTCCEESCHHHHHTTCCHHHHHH T ss_pred ----------------------------------HCCCCCCCCCCCCC-CCCCCCCCCCCCEECCHHHHHCCCHHHHHHH T ss_conf ----------------------------------12535487656658-9981520056974577578758775999999 Q ss_pred HHHCC Q ss_conf 97225 Q gi|254780753|r 350 TLAIK 354 (355) Q Consensus 350 ~l~~~ 354 (355) ++.|+ T Consensus 157 ~~~~~ 161 (162) T 1gqe_A 157 SLKAG 161 (162) T ss_dssp HHHTT T ss_pred HHHCC T ss_conf 99776 No 3 >>2ihr_1 Peptide chain release factor 2; mixed alpha-beta, translation; 2.50A {Thermus thermophilus} PDB: 2b9m_Y* 3f1e_X 3f1g_X 2jl5_Y 2jl7_Y 2wh1_Y 2wh3_Y (1:111-220,1:304-365) Probab=100.00 E-value=0 Score=437.13 Aligned_cols=160 Identities=53% Similarity=0.882 Sum_probs=153.5 Q ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCHHHEEECCEEEEE Q ss_conf 57662489982177870277899999998999987753113444205454585013468850556100000101206898 Q gi|254780753|r 112 ADSNDAYLEVHAGAGGTESQDWANMLLRMYTRWAEKRKFKTEALEIHDGEEAGIKSATLLIKGPNAYGWLKGEQGVHRLV 191 (355) Q Consensus 112 ~D~~nailEI~AGaGG~EA~dwA~~L~rMY~r~ae~~gwk~evi~~~~~e~~GiK~~~~~I~G~~ayg~Lk~E~GvHRv~ 191 (355) ||.++|+|||+||+||+||++||++||+||.+||+++||++++++.++++.+|||+|++.|+|++||++||+|+|||||| T Consensus 1 ~D~~~~ileI~aG~GG~Ea~~fa~~L~~mY~~~a~~~g~~~evi~~~~~~~~G~ksa~l~i~G~~ay~~lk~E~GvHrvq 80 (172) T 2ihr_1 1 HAEKNAILTIQPGAGGTEACDWAEMLLRMYTRFAERQGFQVEVVDLTPGPEAGIDYAQILVKGENAYGLLSPEAGVHRLV 80 (172) T ss_dssp STTSEEEEEEEECSSTHHHHHHHHHHHHHHHHHHHTTTCEEEEEEEEECSSSSEEEEEEEEESTTHHHHHGGGCEEEEEE T ss_pred CCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCEEEEECCCCCCCCEEEEECCEEEE T ss_conf 34554279998358713689999999999999998669848885202666678631577744744201246772216899 Q ss_pred EECCCCCCCEEEEEEEEEEECCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHH Q ss_conf 73046666503566887885034422211123455036998538886554427310035887469747766555552246 Q gi|254780753|r 192 RISPYDSNSRRHTSFSSIWVYPVVDDSIEIEISESDCRIDTYRASGAGGQHVNTTDSAVRITHIPTGVVVQCQQERSQHK 271 (355) Q Consensus 192 Ri~~~~s~gR~hTS~a~V~V~P~~~~~~~i~i~~~dl~i~~~rssg~ggq~vn~t~savri~H~ptgi~v~~q~~rsq~~ 271 (355) |+|||+++||||||||+|+|+|++++++++ T Consensus 81 R~s~~~~~~rrhTs~~~V~VlP~~~~~~~i-------------------------------------------------- 110 (172) T 2ihr_1 81 RPSPFDASGRRHTSFAGVEVIPEVDEEVEV-------------------------------------------------- 110 (172) T ss_dssp EECTTSSSCCEEEEEEEEEEEEECCSSSSC-------------------------------------------------- T ss_pred EECCCCCCCCEEEEEEEEEEECCCCHHHHC-------------------------------------------------- T ss_conf 722556655224567899995442200222-------------------------------------------------- Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCEECCHHHHHCCCHHHHHHHHH Q ss_conf 79999999999999999999999999987413323322210130158568331111472507977871897799999997 Q gi|254780753|r 272 NKAQAWNMLRAKLYELELQKREEIANIGESSKTEIGWGRQIRSYVLQPYQMVKDLRTNIEKTSPSDVLDGDLDDFMKATL 351 (355) Q Consensus 272 Nk~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~iRtY~~~p~~~v~DhR~~~~~~~~~~vl~G~ld~~i~a~l 351 (355) .++||+||||||| ||+||||||||++++||++||+|+||+||+|++ T Consensus 111 ---------------------------------~~~rs~~IRtYn~-p~~rvtDhR~~~~~~~l~~vl~G~l~~~i~a~~ 156 (172) T 2ihr_1 111 ---------------------------------PIEWGSQIRSYVL-DKNYVKDHRTGLMRHDPENVLDGDLMDLIWAGL 156 (172) T ss_dssp ---------------------------------CSCCCSCSEEEEG-GGTEEEETTTCCEESCHHHHTTTCCHHHHHHHH T ss_pred ---------------------------------CCCCCCCCCCEEC-CCCCCCEECCCCEECCHHHHHCCCHHHHHHHHH T ss_conf ---------------------------------7776788015467-988321003397667868876887099999999 Q ss_pred HCCC Q ss_conf 2259 Q gi|254780753|r 352 AIKK 355 (355) Q Consensus 352 ~~~~ 355 (355) +|++ T Consensus 157 ~~~~ 160 (172) T 2ihr_1 157 EWKA 160 (172) T ss_dssp HHHH T ss_pred HHHH T ss_conf 9999 No 4 >>1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor 1 (RF-1), structural genomics, joint center for structural genomics, JCSG; 2.34A {Streptococcus mutans} (A:117-228,A:312-349) Probab=100.00 E-value=0 Score=433.15 Aligned_cols=150 Identities=30% Similarity=0.494 Sum_probs=142.6 Q ss_pred CCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCHHHEEECCEE Q ss_conf 03457662489982177870277899999998999987753113444205454585013468850556100000101206 Q gi|254780753|r 109 SGEADSNDAYLEVHAGAGGTESQDWANMLLRMYTRWAEKRKFKTEALEIHDGEEAGIKSATLLIKGPNAYGWLKGEQGVH 188 (355) Q Consensus 109 s~e~D~~nailEI~AGaGG~EA~dwA~~L~rMY~r~ae~~gwk~evi~~~~~e~~GiK~~~~~I~G~~ayg~Lk~E~GvH 188 (355) .||+|.++|||||+||+||+||+|||+||||||.+||+++||++++++.++++.+|||+|++.|+|++|||+||+|+||| T Consensus 1 k~~~D~~~aileI~aGaGG~EA~~fa~~L~~MY~~~a~~~g~~~ev~~~~~~~~~G~k~a~~~I~G~~ayg~lk~E~GvH 80 (150) T 1zbt_A 1 KDPNDDKNIILEIRGAAGGDEAALFAGDLLNXYQKYAENQGWKFEVXEASANGVGGLKEVVAXVSGQSVYSKLKYESGAH 80 (150) T ss_dssp CCTTTTSCEEEEEEECTTTHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEEECSSSCEEEEEEEEESTTHHHHHGGGCEEE T ss_pred CCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCEEEEECCCCHHHHHEECCCCE T ss_conf 65456654389997057841599999989999999998523625653534677678332257741742254413337743 Q ss_pred EEEEECCCCCCCEEEEEEEEEEECCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHH Q ss_conf 89873046666503566887885034422211123455036998538886554427310035887469747766555552 Q gi|254780753|r 189 RLVRISPYDSNSRRHTSFSSIWVYPVVDDSIEIEISESDCRIDTYRASGAGGQHVNTTDSAVRITHIPTGVVVQCQQERS 268 (355) Q Consensus 189 Rv~Ri~~~~s~gR~hTS~a~V~V~P~~~~~~~i~i~~~dl~i~~~rssg~ggq~vn~t~savri~H~ptgi~v~~q~~rs 268 (355) ||||||||+++||+|||||+|+|+|+++| ++| T Consensus 81 RvqRip~~~s~~R~hTS~asV~VlP~~~e-~ei----------------------------------------------- 112 (150) T 1zbt_A 81 RVQRVPVTESQGRVHTSTATVLVXPEVEE-VEY----------------------------------------------- 112 (150) T ss_dssp EEEECCTTCSSCCCEEEEEEEEEEECCCG-GGS----------------------------------------------- T ss_pred EEEECCCCCCCCCEEEEEEEEEEEEECCC-CCC----------------------------------------------- T ss_conf 78622576877742688889999711364-102----------------------------------------------- Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCEECCHHHHHCCC Q ss_conf 24679999999999999999999999999987413323322210130158568331111472507977871897 Q gi|254780753|r 269 QHKNKAQAWNMLRAKLYELELQKREEIANIGESSKTEIGWGRQIRSYVLQPYQMVKDLRTNIEKTSPSDVLDGD 342 (355) Q Consensus 269 q~~Nk~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~iRtY~~~p~~~v~DhR~~~~~~~~~~vl~G~ 342 (355) +..+|++||||||| ||+||||||+|.++++|+.||+|+ T Consensus 113 -----------------------------------~s~~RsekiRTYNf-~q~rvtDHr~~~~~~~l~~~l~Ge 150 (150) T 1zbt_A 113 -----------------------------------GTGDRSERIRTYNF-PQNRVTDHRIGLTLQKLDSILSGK 150 (150) T ss_dssp -----------------------------------SCSCTTSEEEEEET-TTTEEEETTTTEEESCHHHHHTTC T ss_pred -----------------------------------CCCCCCCCCCCEEC-CCCCCHHHCCCCEECCHHHHHCCC T ss_conf -----------------------------------12665457506317-977506531387646845773987 No 5 >>1rq0_A RF-1, peptide chain release factor 1; X-RAY, crystal, peptide release factor 1, ribosome, structural genomics, BSGC structure funded by NIH; 2.65A {Thermotoga maritima} (A:84-191,A:274-312) Probab=100.00 E-value=0 Score=363.27 Aligned_cols=146 Identities=38% Similarity=0.623 Sum_probs=138.0 Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCHHHEEECCEEEEEEE Q ss_conf 66248998217787027789999999899998775311344420545458501346885055610000010120689873 Q gi|254780753|r 114 SNDAYLEVHAGAGGTESQDWANMLLRMYTRWAEKRKFKTEALEIHDGEEAGIKSATLLIKGPNAYGWLKGEQGVHRLVRI 193 (355) Q Consensus 114 ~~nailEI~AGaGG~EA~dwA~~L~rMY~r~ae~~gwk~evi~~~~~e~~GiK~~~~~I~G~~ayg~Lk~E~GvHRv~Ri 193 (355) +++|+|+|+||+||+||++||++||+||.+||+++||++++++.++++.+|||||++.|.|++||++|++|+||||+||+ T Consensus 2 ~~~~~leI~aG~GG~Ea~~~a~~L~~mY~~~a~~~g~~~evi~~~~~~~~G~ksa~l~i~G~~ay~~l~~E~GvHrvir~ 81 (147) T 1rq0_A 2 SDKAIVEIRPGTGGEEAALFARDLFRMYTRYAERKGWNLEVAEIHETDLGGIREVVFFVKGKNAYGILKYESGVHRVQRV 81 (147) T ss_dssp CSEEEEEEEECSSTHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEEECTTSCEEEEEEEEESTTHHHHHGGGCEEEEEEEC T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHEEECCCCCHHHHCCCCCEEEEEEE T ss_conf 45617999447770578899999999999998760345321223332334312121111023304543221100699973 Q ss_pred CCCCCCCEEEEEEEEEEECCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHH Q ss_conf 04666650356688788503442221112345503699853888655442731003588746974776655555224679 Q gi|254780753|r 194 SPYDSNSRRHTSFSSIWVYPVVDDSIEIEISESDCRIDTYRASGAGGQHVNTTDSAVRITHIPTGVVVQCQQERSQHKNK 273 (355) Q Consensus 194 ~~~~s~gR~hTS~a~V~V~P~~~~~~~i~i~~~dl~i~~~rssg~ggq~vn~t~savri~H~ptgi~v~~q~~rsq~~Nk 273 (355) |||++++|||||||+|+|+|.+++..++ T Consensus 82 sp~~~~~kr~ts~v~V~vlP~~~e~~~~---------------------------------------------------- 109 (147) T 1rq0_A 82 PVTESGGRIHTSTATVAVLPEIEEKDII---------------------------------------------------- 109 (147) T ss_dssp CTTSCSCCCEEEEEEEEEEECCCGGGS----------------------------------------------------- T ss_pred CCCCCCCCEEEEEEEEEEEEECCCCCEC---------------------------------------------------- T ss_conf 3667767556676799999724655163---------------------------------------------------- Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCEECCHHHHHCCC Q ss_conf 999999999999999999999999987413323322210130158568331111472507977871897 Q gi|254780753|r 274 AQAWNMLRAKLYELELQKREEIANIGESSKTEIGWGRQIRSYVLQPYQMVKDLRTNIEKTSPSDVLDGD 342 (355) Q Consensus 274 ~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~iRtY~~~p~~~v~DhR~~~~~~~~~~vl~G~ 342 (355) +..+|++||||||| ||+||||||+|.++++++.||+|+ T Consensus 110 ------------------------------~~~~rs~kirtynf-~~~rvtdhr~~~~~~~~~~~~~ge 147 (147) T 1rq0_A 110 ------------------------------GTGERSEKIRTYNF-PQNRVTDHRINYTSYRLQEILDGD 147 (147) T ss_dssp ----------------------------------CCCEEEEEET-TTTEEEETTTTEEESCHHHHHTTC T ss_pred ------------------------------CCCCCCCCCCCCCC-CCCCCHHHCCCCCCCCHHHHHCCC T ss_conf ------------------------------33456799704018-988742312598027867874987 No 6 >>2jy9_A Putative tRNA hydrolase domain; GFT protein structure, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2} (A:) Probab=99.94 E-value=7.6e-29 Score=226.46 Aligned_cols=116 Identities=28% Similarity=0.369 Sum_probs=94.6 Q ss_pred CCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCEEEEEE------------------------ECCCHHHHHHHHHH Q ss_conf 034422211123455036998538886554427310035887------------------------46974776655555 Q gi|254780753|r 212 YPVVDDSIEIEISESDCRIDTYRASGAGGQHVNTTDSAVRIT------------------------HIPTGVVVQCQQER 267 (355) Q Consensus 212 ~P~~~~~~~i~i~~~dl~i~~~rssg~ggq~vn~t~savri~------------------------H~ptgi~v~~q~~r 267 (355) +|++++ ++.|+++||++.|+|||||||||||||+|+|+|+ |+||||+|.||++| T Consensus 1 ~~~~~~--~i~I~~~~l~~~f~RSsGpGGQ~VNKt~skV~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~s~~~R 78 (148) T 2jy9_A 1 MIAISR--TVSIADNELEITAIRAQGAGGQHVNKTSSAIHLRFDIRASGLPEYYKQRLLTASHHLISDDGVIIIKAQEFR 78 (148) T ss_dssp CBCCSS--SCCBCSTTCEEEEECCSCCCSSCSCSCSCEEEEEECSTTSCCCHHHHHHHHHSCCTTBCSSSCEEEEECSSS T ss_pred CCCCCC--CCCCCHHHEEEEEEECCCCCCCCCCHHCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEECCCC T ss_conf 943478--782576990789887679987640122201478973144679979999999974545458971899976758 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHCCCCCCEEEEECCCCCCCCCCCCC Q ss_conf 224679999999999999999999999999987--------41332332221013015856833111147 Q gi|254780753|r 268 SQHKNKAQAWNMLRAKLYELELQKREEIANIGE--------SSKTEIGWGRQIRSYVLQPYQMVKDLRTN 329 (355) Q Consensus 268 sq~~Nk~~a~~~l~~~l~~~~~~~~~~~~~~~~--------~~~~~~~~g~~iRtY~~~p~~~v~DhR~~ 329 (355) ||++|++.|+.+|+++|.+...+.......... ..+..-++..++|+|||+|+++|+||||+ T Consensus 79 sQ~~N~~~al~kL~~~l~~~~~~~k~~~~~~~~~~~~r~rl~~Kk~rs~~K~~R~~~~~~~~~~~d~~~~ 148 (148) T 2jy9_A 79 SQELNREAAIARLVAVIKELTAEQKSRRATRPTRASKERRLSSKAQKSSVKALRGKVRRPLDLEHHHHHH 148 (148) T ss_dssp CHHHHHHHHHHHHHHHHHHHHSCTTCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCC T ss_conf 9999999999999999998650777622467467899999999999899986248988975410101469 No 7 >>2ihr_1 Peptide chain release factor 2; mixed alpha-beta, translation; 2.50A {Thermus thermophilus} PDB: 2b9m_Y* 3f1e_X 3f1g_X 2jl5_Y 2jl7_Y 2wh1_Y 2wh3_Y (1:221-303) Probab=99.92 E-value=1.2e-25 Score=203.52 Aligned_cols=78 Identities=56% Similarity=0.797 Sum_probs=71.3 Q ss_pred CCCCCEEEEEEECCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 234550369985388865544273100358874697477665555522467999999999999999999999999998 Q gi|254780753|r 222 EISESDCRIDTYRASGAGGQHVNTTDSAVRITHIPTGVVVQCQQERSQHKNKAQAWNMLRAKLYELELQKREEIANIG 299 (355) Q Consensus 222 ~i~~~dl~i~~~rssg~ggq~vn~t~savri~H~ptgi~v~~q~~rsq~~Nk~~a~~~l~~~l~~~~~~~~~~~~~~~ 299 (355) .|+++||+|+|+|||||||||||||+|||||+|+||||+|.||++|||++||..||.+|+++|++...++........ T Consensus 1 ~I~~~dl~~~~~rssGpGGQ~VNKt~s~V~l~h~ptgi~v~~~~~RSq~~Nr~~A~~~L~~~L~~~~~~~~~~~~~~~ 78 (83) T 2ihr_1 1 VLKPEELRIDVMRASGPGGQGVNTTDSAVRVVHLPTGITVTCQTTRSQIKNKELALKILKARLYELERKKREEELKAL 78 (83) T ss_dssp CCCGGGEEEEEECCCCSSCCSGGGSCSEEEEEETTTTEEEEECSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT T ss_pred CCCCCCCEEEEEECCCCCCCHHHHHHHHEEEEEECCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 468022048863257622001465430126898245266742010578999999999999999999999999999999 No 8 >>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} (A:232-314) Probab=99.91 E-value=2.2e-25 Score=201.76 Aligned_cols=77 Identities=68% Similarity=0.991 Sum_probs=71.8 Q ss_pred CCCCCCEEEEEEECCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 12345503699853888655442731003588746974776655555224679999999999999999999999999 Q gi|254780753|r 221 IEISESDCRIDTYRASGAGGQHVNTTDSAVRITHIPTGVVVQCQQERSQHKNKAQAWNMLRAKLYELELQKREEIAN 297 (355) Q Consensus 221 i~i~~~dl~i~~~rssg~ggq~vn~t~savri~H~ptgi~v~~q~~rsq~~Nk~~a~~~l~~~l~~~~~~~~~~~~~ 297 (355) ++|+++||+|+++|||||||||||||+|||||+|+||||+|.||++|||++||..|+.+|+++|+++..++.....+ T Consensus 1 i~i~~~dl~~~~~rssGpGGQ~vNK~~t~V~l~h~ptgi~v~~~~~RSq~~Nk~~A~~~L~~~l~~~~~~~~~~~~~ 77 (83) T 1gqe_A 1 IEINPADLRIDVYRASGAGGQHVNRTESAVRITHIPTGIVTQCQNDRSQHKNKDQAXKQXKAKLYEVEXQKKNAEKQ 77 (83) T ss_dssp CCCCGGGEEEEEECCCCSSCCSTTSSCCEEEEEETTTCCEEEECSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT T ss_pred EECCCCCEEEEEECCCCCCCCCCCCCCEEEEEEEECCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 00167624799723889987665642404899982687289950665467899999999999999999999999999 No 9 >>3d5a_X RF1, peptide chain release factor 1; ribosome, coiled coil, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding; 3.21A {Thermus thermophilus HB27} PDB: 2b64_Y 3d5c_X (X:211-296) Probab=99.91 E-value=5.5e-25 Score=198.83 Aligned_cols=86 Identities=47% Similarity=0.713 Sum_probs=77.0 Q ss_pred CCCCCEEEEEEECCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 23455036998538886554427310035887469747766555552246799999999999999999999999999874 Q gi|254780753|r 222 EISESDCRIDTYRASGAGGQHVNTTDSAVRITHIPTGVVVQCQQERSQHKNKAQAWNMLRAKLYELELQKREEIANIGES 301 (355) Q Consensus 222 ~i~~~dl~i~~~rssg~ggq~vn~t~savri~H~ptgi~v~~q~~rsq~~Nk~~a~~~l~~~l~~~~~~~~~~~~~~~~~ 301 (355) .|+++||+|+|+|||||||||||||+|||||+|+||||+|.||++|||++||+.||.+|+++|++...+++....... T Consensus 1 sI~~~dl~~~~~rssGpGGQ~VNk~~t~V~i~h~ptgi~v~~~~~RSq~~Nr~~A~~~L~~~L~~~~~~~~~~~~~~~-- 78 (86) T 3d5a_X 1 ALNMDEIRIDVMRASGPGGQGVNTTDSAVRVVHLPTGIMVTCQDSRSQIKNREKALMILRSRLLEMKRAEEAERLRKT-- 78 (86) T ss_dssp CCCGGGEEEEEECCCSCCHHHHHHCCCEEEEEETTTTEEEEECCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-- T ss_pred CCCCCCCEEEEECCCCCCCCHHHHHHHCCEEEECCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-- T ss_conf 555421003320367521001566740335797588769981332144899999999999999999998899999998-- Q ss_pred HHHHCCCC Q ss_conf 13323322 Q gi|254780753|r 302 SKTEIGWG 309 (355) Q Consensus 302 ~~~~~~~g 309 (355) ++..+.|| T Consensus 79 ~k~~~~rG 86 (86) T 3d5a_X 79 RLAQIGTG 86 (86) T ss_dssp HHHHSCGG T ss_pred HHHCCCCC T ss_conf 87137434 No 10 >>1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor 1 (RF-1), structural genomics, joint center for structural genomics, JCSG; 2.34A {Streptococcus mutans} (A:229-311) Probab=99.90 E-value=8.4e-25 Score=197.54 Aligned_cols=75 Identities=44% Similarity=0.686 Sum_probs=69.9 Q ss_pred CCCCCEEEEEEECCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 234550369985388865544273100358874697477665555522467999999999999999999999999 Q gi|254780753|r 222 EISESDCRIDTYRASGAGGQHVNTTDSAVRITHIPTGVVVQCQQERSQHKNKAQAWNMLRAKLYELELQKREEIA 296 (355) Q Consensus 222 ~i~~~dl~i~~~rssg~ggq~vn~t~savri~H~ptgi~v~~q~~rsq~~Nk~~a~~~l~~~l~~~~~~~~~~~~ 296 (355) +|+++||+|+++|||||||||||||+|||||+|+||||+|.||++|||++||+.||.+|+++|++...+++..+. T Consensus 1 eI~~~dl~~~~~rssGpGGQ~VNk~~s~V~l~h~ptgi~v~~~~~RSq~~Nk~~A~~rL~~~L~~~~~~~~~~~~ 75 (83) T 1zbt_A 1 EIDPKDLRVDIYHASGAGGQNVNKVATAVRIIHLPTNIKVEXQEERTQQKNRDKAXKIIRARVADHFAQIAQDEQ 75 (83) T ss_dssp CCCGGGEEEEEECC---------CCCCEEEEEETTTTEEEEECSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHT T ss_pred CCCCCCCEEEEECCCCCCCCCCCCHHHEEEEEECCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 367665169983278875545451320157998278845745534654777999999999999999999999999 No 11 >>1rq0_A RF-1, peptide chain release factor 1; X-RAY, crystal, peptide release factor 1, ribosome, structural genomics, BSGC structure funded by NIH; 2.65A {Thermotoga maritima} (A:192-273) Probab=99.90 E-value=9.2e-25 Score=197.25 Aligned_cols=74 Identities=58% Similarity=0.901 Sum_probs=69.3 Q ss_pred CCCCCEEEEEEECCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 23455036998538886554427310035887469747766555552246799999999999999999999999 Q gi|254780753|r 222 EISESDCRIDTYRASGAGGQHVNTTDSAVRITHIPTGVVVQCQQERSQHKNKAQAWNMLRAKLYELELQKREEI 295 (355) Q Consensus 222 ~i~~~dl~i~~~rssg~ggq~vn~t~savri~H~ptgi~v~~q~~rsq~~Nk~~a~~~l~~~l~~~~~~~~~~~ 295 (355) +|+++||+|+|+|||||||||||||+|||+|+|+||||+|.||++|||++||..|+.+|+++|++...+++... T Consensus 1 ~I~~~dl~~~~~rssGpGGQ~VNkt~s~V~l~h~ptgi~v~~~~~RSq~~Nk~~A~~rL~~~L~~~~~~~~~~~ 74 (82) T 1rq0_A 1 EIRPEDLKIETFRASGHGGQYVNKTESAVRITHLPTGIVVSCQNERSQYQNKQTALRILRARLYQLQKEQKERE 74 (82) T ss_dssp CCCGGGEEEEEECCCC----CCSSSSEEEEEEETTTCCEEEEEESSCHHHHHHHHHHHHHHHHHHHHHHHHHTT T ss_pred EECCCCEEEEECCCCCHHCCHHHHHHHEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 76520314652036410001132444024799869860887035664448999999999999999999999999 No 12 >>2b3t_B RF-1, peptide chain release factor 1; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} (B:215-294) Probab=99.89 E-value=1.1e-24 Score=196.58 Aligned_cols=73 Identities=63% Similarity=1.008 Sum_probs=68.2 Q ss_pred CCCCCEEEEEEECCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 2345503699853888655442731003588746974776655555224679999999999999999999999 Q gi|254780753|r 222 EISESDCRIDTYRASGAGGQHVNTTDSAVRITHIPTGVVVQCQQERSQHKNKAQAWNMLRAKLYELELQKREE 294 (355) Q Consensus 222 ~i~~~dl~i~~~rssg~ggq~vn~t~savri~H~ptgi~v~~q~~rsq~~Nk~~a~~~l~~~l~~~~~~~~~~ 294 (355) +|+++||+|+|||||||||||||||+|||||+|+||||+|.||++|||++||+.||++|+++|++...++... T Consensus 2 ei~~~dl~~~~~rssGpGGQ~vNk~~s~V~l~h~ptgi~v~~~~~RSq~~Nk~~A~~~L~~~L~~~~~~~~~~ 74 (80) T 2b3t_B 2 DVNPADLRIDTFRSSGAGGQHVNTTDSAIRITHLPTGIVVECQDERSQHKNKAKALSVLGARIHAAEMAKRQQ 74 (80) T ss_dssp CCCSSSEEEEECCSSCCCTTTCCCSSEEEEEEETTTCCEEEEEESSCHHHHHHHHHHHHHHHHTTTTTTSCC- T ss_pred CCCCCCCEEEEECCCCCCCCCCCHHHCEEEEEECCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 4071024798722887555420204401589986887488830787605899999999999999999877799 No 13 >>1j26_A Immature colon carcinoma transcript 1; peptide chain release factors, RF-1, the GGQ motif, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} (A:) Probab=99.84 E-value=9.6e-22 Score=175.71 Aligned_cols=83 Identities=23% Similarity=0.225 Sum_probs=77.5 Q ss_pred EEEEECCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCEEEEEEE-------------------------CCCHHHH Q ss_conf 878850344222111234550369985388865544273100358874-------------------------6974776 Q gi|254780753|r 207 SSIWVYPVVDDSIEIEISESDCRIDTYRASGAGGQHVNTTDSAVRITH-------------------------IPTGVVV 261 (355) Q Consensus 207 a~V~V~P~~~~~~~i~i~~~dl~i~~~rssg~ggq~vn~t~savri~H-------------------------~ptgi~v 261 (355) |+|.++|.+.+..++.|+++||+|.++|||||||||||||+|+|+|+| .|+||+| T Consensus 1 a~~~~~~~~~~~~~~~Ip~~~l~~~~~RssGpGGQ~VNK~~skv~l~~~~~~~~~l~~~~~~~l~~~~~~r~~~~~~l~i 80 (112) T 1j26_A 1 GSSGSSGEHAKQASSYIPLDRLSISYCRSSGPGGQNVNKVNSKAEVRFHLASADWIEEPVRQKIALTHKNKINKAGELVL 80 (112) T ss_dssp CCCCSCSSCCCSSCCCCCTTTSEEEEECCCCSSSSCCSSCCCEEEEEEEGGGCTTSCHHHHHHHHHHTTTTBCSSSEEEE T ss_pred CCCCCCHHHHHHHCCCCCHHHEEEEEEECCCCCCCCCCCCCCCEEEEECHHHCCCCCHHHHHHHHHHHHCCCCCCCEEEE T ss_conf 98886501133404704878937998876799998444303030589762323579999999999986373666983999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 6555552246799999999999999999 Q gi|254780753|r 262 QCQQERSQHKNKAQAWNMLRAKLYELEL 289 (355) Q Consensus 262 ~~q~~rsq~~Nk~~a~~~l~~~l~~~~~ 289 (355) .||++|||++||+.|+++|+++|++... T Consensus 81 ~~~~~RsQ~~N~~~a~~kL~~~l~~a~~ 108 (112) T 1j26_A 81 TSESSRYQFRNLAECLQKIRDMIAEASG 108 (112) T ss_dssp EECCCSSHHHHHHHHHHHHHHHHHHHHC T ss_pred EECCCCCHHHHHHHHHHHHHHHHHHHHC T ss_conf 9887679999999999999999999748 No 14 >>2jva_A Peptidyl-tRNA hydrolase domain protein; GFT hydrolase, structural genomics, PSI-2, protein structure initiative; NMR {Pseudomonas syringae PV} (A:14-108) Probab=99.76 E-value=2.6e-19 Score=158.32 Aligned_cols=64 Identities=31% Similarity=0.408 Sum_probs=60.5 Q ss_pred EEEEEEECCCCCCCCCCCCCCEEEEEE------------------------ECCCHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 036998538886554427310035887------------------------46974776655555224679999999999 Q gi|254780753|r 227 DCRIDTYRASGAGGQHVNTTDSAVRIT------------------------HIPTGVVVQCQQERSQHKNKAQAWNMLRA 282 (355) Q Consensus 227 dl~i~~~rssg~ggq~vn~t~savri~------------------------H~ptgi~v~~q~~rsq~~Nk~~a~~~l~~ 282 (355) ||+|+++|||||||||||||+|+|+|+ |+||||+|.|+++|||++||+.||++|++ T Consensus 1 el~~~~~RsSGPGGQ~VNKt~skV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~i~~~~~RSQ~~Nr~~a~~kL~~ 80 (95) T 2jva_A 1 EIELTAIRAQGAGGQNVNKVSSAMHLRFDINASSLPPFYKERLLALNDSRITSDGVIVLKAQQYRTQEQNRADALLRLSE 80 (95) T ss_dssp GEEEEECCCTTCSSSSSCCCCCCEEEEEETTTSCCCHHHHHHHHTCSCTTBCTTCEEEEEECCSSSHHHHHHHHHHHHHH T ss_pred HEEEEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHH T ss_conf 93899998679988840211523689976655568868999999875312356973999986747999999999999999 Q ss_pred HHHHHHHH Q ss_conf 99999999 Q gi|254780753|r 283 KLYELELQ 290 (355) Q Consensus 283 ~l~~~~~~ 290 (355) +|++.... T Consensus 81 ~l~~~~~~ 88 (95) T 2jva_A 81 LIVNAAKL 88 (95) T ss_dssp HHHHHHHS T ss_pred HHHHHHHH T ss_conf 99999887 No 15 >>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} (A:1-120) Probab=99.74 E-value=5.6e-17 Score=141.62 Aligned_cols=108 Identities=28% Similarity=0.461 Sum_probs=105.4 Q ss_pred CHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 56899999886549899999999999987086600258999999999988999999999999998639999986310000 Q gi|254780753|r 2 KLSRQLNCLGGLFDWDNAVQRLSFLNTKTEDPHLWQNVIEAKMLMRERQHLDNAISFIKEIQDRLCDNLILLELALEEDD 81 (355) Q Consensus 2 EL~~rl~~l~~~fDle~~~~rl~eLE~~lsdp~fW~D~~kAqkl~KE~s~L~~iV~~~~~l~~~l~Dl~eL~ELa~ee~D 81 (355) +|..++..++++||++.++.|+.+|+.++++|+||+||++|++++++++.|+++|+.|+.+...+.|+.++.+|+.+++| T Consensus 13 ~l~~~~~~l~~~l~l~~~~~rl~eLe~~l~~p~fw~d~~~a~~i~ke~~~L~~~v~~~~~l~~~~~dl~~~~el~~ee~D 92 (120) T 1gqe_A 13 DLTERSDVLRGYLDYDAKKERLEEVNAELEQPDVWNEPERAQALGKERSSLEAVVDTLDQXKQGLEDVSGLLELAVEADD 92 (120) T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHHSGGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC T ss_conf 99999999986679899999999999986097245499999999999999999999999999999989999998750224 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 0023456676555774015899887630 Q gi|254780753|r 82 CSILQETSDNLQRIKLEVEYKQFESLLS 109 (355) Q Consensus 82 ~el~eE~~~el~~l~~~le~LE~~~Lls 109 (355) +++.+++..++..+...++.+|+.+||| T Consensus 93 ~e~~e~~~~el~~l~~~l~~lE~~~lLS 120 (120) T 1gqe_A 93 EETFNEAVAELDALEEKLAQLEFRRXFS 120 (120) T ss_dssp HHHHHHHHHHHHHHHHHHHHHGGGGGCC T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCC T ss_conf 6799999999999999999998741369 No 16 >>2ihr_1 Peptide chain release factor 2; mixed alpha-beta, translation; 2.50A {Thermus thermophilus} PDB: 2b9m_Y* 3f1e_X 3f1g_X 2jl5_Y 2jl7_Y 2wh1_Y 2wh3_Y (1:1-110) Probab=99.60 E-value=1.8e-16 Score=137.94 Aligned_cols=106 Identities=24% Similarity=0.370 Sum_probs=100.3 Q ss_pred CHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 56899999886549899999999999987086600258999999999988999999999999998639999986310000 Q gi|254780753|r 2 KLSRQLNCLGGLFDWDNAVQRLSFLNTKTEDPHLWQNVIEAKMLMRERQHLDNAISFIKEIQDRLCDNLILLELALEEDD 81 (355) Q Consensus 2 EL~~rl~~l~~~fDle~~~~rl~eLE~~lsdp~fW~D~~kAqkl~KE~s~L~~iV~~~~~l~~~l~Dl~eL~ELa~ee~D 81 (355) +|.+++..++++||++.++.|+.+|+.+|++|+||+||++|++++|+++.|+++|+.|..+...+.|+.++++|+. T Consensus 5 ~l~~~~~~~~~~ldl~~~~~r~~eLe~~l~~p~~w~d~~~a~~i~ke~~~L~~~v~~~~~~~~~~~d~~~l~el~d---- 80 (110) T 2ihr_1 5 RLAQRLEGLGGIFDIPQKETRLKELERRLEDPSLWNDPEAARKVSQEAARLRRTVDTFRSLESDLQGLLELMEELP---- 80 (110) T ss_dssp -CTTTHHHHTTSSSHHHHHHHHTTTTTSTTCGGGTTTGGGSSSTTHHHHHTHHHHHHHHHHHHHTTTHHHHTTCSC---- T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---- T ss_conf 9999999976244899999999999998729803349999999999999999999999999999999999864110---- Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 002345667655577401589988763034 Q gi|254780753|r 82 CSILQETSDNLQRIKLEVEYKQFESLLSGE 111 (355) Q Consensus 82 ~el~eE~~~el~~l~~~le~LE~~~Lls~e 111 (355) +++.+++..++..+...++++|+.+||+|| T Consensus 81 ~e~~e~~~~el~~l~~~l~~lE~~~LLsgP 110 (110) T 2ihr_1 81 AEEREALKPELEEAAKKLDELYHQTLLNFP 110 (110) T ss_dssp CTTGGGTGGGTHHHHHHHHHHHHHHHTCSS T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHCCC T ss_conf 545666775520100002689998862033 No 17 >>1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor 1 (RF-1), structural genomics, joint center for structural genomics, JCSG; 2.34A {Streptococcus mutans} (A:1-116) Probab=99.51 E-value=1.2e-14 Score=124.97 Aligned_cols=105 Identities=13% Similarity=0.095 Sum_probs=97.9 Q ss_pred CHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCC Q ss_conf 568999998865498999999999999870866002589999999999889999999999999986399999863-1000 Q gi|254780753|r 2 KLSRQLNCLGGLFDWDNAVQRLSFLNTKTEDPHLWQNVIEAKMLMRERQHLDNAISFIKEIQDRLCDNLILLELA-LEED 80 (355) Q Consensus 2 EL~~rl~~l~~~fDle~~~~rl~eLE~~lsdp~fW~D~~kAqkl~KE~s~L~~iV~~~~~l~~~l~Dl~eL~ELa-~ee~ 80 (355) +|..++..+++++|++.+..|+.+|+.++++|+||+||++|++++|+++.|+++++.|+++.+.+.|+.++.+++ .+++ T Consensus 5 ~l~~~~~~~~~~~~le~~~~rl~eLe~~l~~p~~w~D~~~a~~i~ke~~~L~~~v~~~~~~~~~~~d~~~l~ell~~ee~ 84 (116) T 1zbt_A 5 KIHHHHHHXNIYDQLQAVEDRYEELGELLSDPDVVSDTKRFXELSREEANSRETVAVYREYKQVVQNIADAQEXIKDASG 84 (116) T ss_dssp ------CCCCHHHHHHHHHHHHHHC--------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHC------ T ss_pred HHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC T ss_conf 10004353129999999999999999987098411199999999999998999999999999999879999999850367 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 00023456676555774015899887 Q gi|254780753|r 81 DCSILQETSDNLQRIKLEVEYKQFES 106 (355) Q Consensus 81 D~el~eE~~~el~~l~~~le~LE~~~ 106 (355) |+++.+++..++..+...++.+|.++ T Consensus 85 D~e~~~~a~~el~~l~~~~~~lE~~L 110 (116) T 1zbt_A 85 DPELEEXAKEELKNSKVAKEEYEEKL 110 (116) T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 75788788775343333467778888 No 18 >>3d5a_X RF1, peptide chain release factor 1; ribosome, coiled coil, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding; 3.21A {Thermus thermophilus HB27} PDB: 2b64_Y 3d5c_X (X:1-99,X:332-354) Probab=99.40 E-value=1.8e-12 Score=109.50 Aligned_cols=88 Identities=17% Similarity=0.158 Sum_probs=79.8 Q ss_pred HCC-HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH Q ss_conf 549-8999999999999870866002589999999999889999999999999986399999863100000023456676 Q gi|254780753|r 13 LFD-WDNAVQRLSFLNTKTEDPHLWQNVIEAKMLMRERQHLDNAISFIKEIQDRLCDNLILLELALEEDDCSILQETSDN 91 (355) Q Consensus 13 ~fD-le~~~~rl~eLE~~lsdp~fW~D~~kAqkl~KE~s~L~~iV~~~~~l~~~l~Dl~eL~ELa~ee~D~el~eE~~~e 91 (355) ||+ ++.++.|+.+|+.++++|+||+||++|++++++++.|+++|+.|+.+.+..+|+.++.+|+. |+++.+++.++ T Consensus 1 l~~rLe~l~~r~~eLe~~lsdp~fw~D~~~a~~i~kE~~~L~~~v~~y~~l~~~~~di~el~el~~---D~e~~ela~eE 77 (122) T 3d5a_X 1 MLDKLDRLEEEYRELEALLSDPEVLKDKGRYQSLSRRYAEMGEVIGLIREYRKVLEDLEQAESLLD---DPELKEMAKAE 77 (122) T ss_dssp CHHHHHHHTHHHHHHHHHTTSTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTT---CHHHHHHHHHH T ss_pred CCHHHHHHHHHHHHHHHHHCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---CHHHHHHHHHH T ss_conf 915799999999999998709842239999999999999999999999999999998999999850---82211246789 Q ss_pred HHHHHHHHHHHH Q ss_conf 555774015899 Q gi|254780753|r 92 LQRIKLEVEYKQ 103 (355) Q Consensus 92 l~~l~~~le~LE 103 (355) +..+...++.++ T Consensus 78 l~~L~~~i~~lE 89 (122) T 3d5a_X 78 REALLARKEALE 89 (122) T ss_dssp HHHHHHHHHHHH T ss_pred HHHHHHHHHHHH T ss_conf 987654577899 No 19 >>1rq0_A RF-1, peptide chain release factor 1; X-RAY, crystal, peptide release factor 1, ribosome, structural genomics, BSGC structure funded by NIH; 2.65A {Thermotoga maritima} (A:1-83,A:313-342) Probab=95.47 E-value=0.09 Score=32.96 Aligned_cols=81 Identities=20% Similarity=0.275 Sum_probs=57.3 Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 99999998708660025899999999998899999999999999863999998631000000234566765557740158 Q gi|254780753|r 22 RLSFLNTKTEDPHLWQNVIEAKMLMRERQHLDNAISFIKEIQDRLCDNLILLELALEEDDCSILQETSDNLQRIKLEVEY 101 (355) Q Consensus 22 rl~eLE~~lsdp~fW~D~~kAqkl~KE~s~L~~iV~~~~~l~~~l~Dl~eL~ELa~ee~D~el~eE~~~el~~l~~~le~ 101 (355) +-+++++.++.|++ .|...+...-+|+.++.+ +.+.+.+.+.+++++|.++++..++ ++...++.++. T Consensus 4 kkkeiekll~rpdl--spe~mknyg~eyak~eei----e~i~nri~etqefiell~ee~e~e~------ei~~yekeld~ 71 (113) T 1rq0_A 4 KKKEIEKLLARPDL--TPEQMKNYGMEYAKIEEI----ENITNRIKETQEFIELLREEGENEL------EIEKYEKELDQ 71 (113) T ss_dssp TTTHHHHHHHSSCC--CHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHTTTTTTTTCCS------CHHHHHHHHHH T ss_pred HHHHHHHHHHCCCC--CHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHCCCCCHH------HHHHHHHHHHH T ss_conf 99999999728998--999999999999999999----9999999989999999864887589------99999999999 Q ss_pred H--HHHHHHCCCCCC Q ss_conf 9--988763034576 Q gi|254780753|r 102 K--QFESLLSGEADS 114 (355) Q Consensus 102 L--E~~~Lls~e~D~ 114 (355) | ++..|+|.+.|. T Consensus 72 l~qel~~llspelde 86 (113) T 1rq0_A 72 LYQELLFLLSPELDE 86 (113) T ss_dssp HHHHHHHHHSCSCHH T ss_pred HHHHHHCCCCCCHHH T ss_conf 999753113200399 No 20 >>1xaw_A Occludin; coiled-coil, cell adhesion; 1.45A {Homo sapiens} (A:) Probab=85.66 E-value=1.7 Score=23.76 Aligned_cols=39 Identities=13% Similarity=0.136 Sum_probs=12.5 Q ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 999999999987086600258999999999988999999 Q gi|254780753|r 19 AVQRLSFLNTKTEDPHLWQNVIEAKMLMRERQHLDNAIS 57 (355) Q Consensus 19 ~~~rl~eLE~~lsdp~fW~D~~kAqkl~KE~s~L~~iV~ 57 (355) +...+.++...-.+|+|+....+..-|-.+++.|+..|. T Consensus 95 i~~~i~ey~k~k~~p~y~~~K~rc~yL~~KL~HIK~lI~ 133 (140) T 1xaw_A 95 AADEYNRLKQVKGSADYKSKKNHCKQLKSKLSHIKKMVG 133 (140) T ss_dssp HHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 999999999882383499999999999999999999999 No 21 >>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A (A:1-113) Probab=84.71 E-value=3.1 Score=21.96 Aligned_cols=91 Identities=9% Similarity=0.075 Sum_probs=51.7 Q ss_pred HCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCC-CHHHH---H Q ss_conf 54989999999999998708660025899999999998899999999999999863999998631-0000-00234---5 Q gi|254780753|r 13 LFDWDNAVQRLSFLNTKTEDPHLWQNVIEAKMLMRERQHLDNAISFIKEIQDRLCDNLILLELAL-EEDD-CSILQ---E 87 (355) Q Consensus 13 ~fDle~~~~rl~eLE~~lsdp~fW~D~~kAqkl~KE~s~L~~iV~~~~~l~~~l~Dl~eL~ELa~-ee~D-~el~e---E 87 (355) |+|+..++...+.+...+..-++=.|......+..-..........++.+....+.+.--+..+. +.++ .++.. . T Consensus 1 MLDik~ir~n~e~~~~~l~~R~~~~~~~~id~i~~l~~~~r~~~~~~~~l~~~rn~lsk~i~~~~~~~~e~~~l~~e~~~ 80 (113) T 2dq0_A 1 MLDIKLIRENPELVKNDLIKRGELEKVKWVDEILKLDTEWRTKLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSRE 80 (113) T ss_dssp CCCHHHHHHCHHHHHHHHHHHTCGGGTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHH T ss_pred CCCHHHHHHCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH T ss_conf 98878887599999999987399630556999999999999999999999999999999999998679978999999999 Q ss_pred HHHHHHHHHHHHHHHH Q ss_conf 6676555774015899 Q gi|254780753|r 88 TSDNLQRIKLEVEYKQ 103 (355) Q Consensus 88 ~~~el~~l~~~le~LE 103 (355) +.+++..++..+..++ T Consensus 81 lk~~l~~le~~~~~~~ 96 (113) T 2dq0_A 81 IVKRIGELENEVEELK 96 (113) T ss_dssp HHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHH T ss_conf 9999999999999999 No 22 >>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus} (A:39-159) Probab=47.32 E-value=19 Score=16.33 Aligned_cols=55 Identities=11% Similarity=0.039 Sum_probs=34.1 Q ss_pred HCCHHHHHHHHHHHHHHHHCCCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 549899999999999987086600---2589999999999889999999999999986 Q gi|254780753|r 13 LFDWDNAVQRLSFLNTKTEDPHLW---QNVIEAKMLMRERQHLDNAISFIKEIQDRLC 67 (355) Q Consensus 13 ~fDle~~~~rl~eLE~~lsdp~fW---~D~~kAqkl~KE~s~L~~iV~~~~~l~~~l~ 67 (355) |||+..++.-.+.+..-+..-.+= .+......+-+++..+...++.+..-.+.+. T Consensus 2 MlDik~ir~n~e~~~~~l~~R~~~~~~~~vd~i~~ld~~~r~~~~~~~~l~~~~n~is 59 (121) T 1wle_A 2 LLDMESLCAYPEDAARALDLRKGELRSKDLPGIISTWQELRQLREQIRSLEEEKEAVT 59 (121) T ss_dssp CCCHHHHHHSHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred CCCHHHHHHCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 5179998769999999999718975444399999999999999999999999999999 No 23 >>1yll_A PA5104, conserved hypothetical protein; structural genomics, beta- barrels, PSI, protein structure initiative; 1.64A {Pseudomonas aeruginosa PAO1} (A:1-12,A:118-200) Probab=41.95 E-value=20 Score=16.22 Aligned_cols=53 Identities=19% Similarity=0.211 Sum_probs=35.5 Q ss_pred CEEEEEEECCCCCCCEEEEEEEEEEECCCCCCCCCCCCCCCEEEE----EEECCCCCCC Q ss_conf 206898730466665035668878850344222111234550369----9853888655 Q gi|254780753|r 186 GVHRLVRISPYDSNSRRHTSFSSIWVYPVVDDSIEIEISESDCRI----DTYRASGAGG 240 (355) Q Consensus 186 GvHRv~Ri~~~~s~gR~hTS~a~V~V~P~~~~~~~i~i~~~dl~i----~~~rssg~gg 240 (355) =.-|+|++.....+ |-+.|+-+|.|.-.-++ ++|.++..+..+ |+-+-.|.+| T Consensus 15 Y~ARLQWld~~~~q-~~~SsAstvliFn~~~~-v~V~v~g~~~q~L~~~dcL~ie~n~~ 71 (95) T 1yll_A 15 HRARLQWLRVEGEL-DWHGTASTLLLFAQQDG-VAISLQGQPRGQLAAHDCLCAEGLQG 71 (95) T ss_dssp EEEEEEEEEEEEEE-EEEECCSEEEEEESSSC-EEEEETTEEEEEECTTCEEEEESCCS T ss_pred CEEEEEEEECCCCC-EECCCCCEEEEEECCCC-EEEECCCCCEEECCCCCEEEEECCCC T ss_conf 27999999616740-01168866999986687-89983997237517888899948987 No 24 >>2waq_A DNA-directed RNA polymerase RPO1N subunit; multi-subunit, transcription; 3.35A {Sulfolobus shibatae} PDB: 2wb1_A 2pmz_A 3hkz_A (A:487-514,A:600-650) Probab=41.71 E-value=23 Score=15.76 Aligned_cols=32 Identities=16% Similarity=0.247 Sum_probs=28.0 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 78702778999999989999877531134442 Q gi|254780753|r 125 AGGTESQDWANMLLRMYTRWAEKRKFKTEALE 156 (355) Q Consensus 125 aGG~EA~dwA~~L~rMY~r~ae~~gwk~evi~ 156 (355) -|..+|..|-..+.||-.+|-..+||.+-+-| T Consensus 48 yG~~~a~~fl~~iqrl~~~~L~~~GFSiGi~D 79 (79) T 2waq_A 48 YSDEYGKWLMDNLFRVFIRFVELQGFTMRLED 79 (79) T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHCCCCCGGG T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC T ss_conf 20035578999999999999887412221000 No 25 >>2vqe_I 30S ribosomal protein S9, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} (I:) Probab=38.04 E-value=16 Score=16.83 Aligned_cols=29 Identities=14% Similarity=0.304 Sum_probs=20.5 Q ss_pred CCCCEEEEEEEEEEECCCCCCCCCCCCCCCEE Q ss_conf 66650356688788503442221112345503 Q gi|254780753|r 197 DSNSRRHTSFSSIWVYPVVDDSIEIEISESDC 228 (355) Q Consensus 197 ~s~gR~hTS~a~V~V~P~~~~~~~i~i~~~dl 228 (355) -+.|||.||.|.|.+.|-- -.|.||..++ T Consensus 5 ~~~GkRKta~A~v~l~~G~---G~I~INg~~l 33 (128) T 2vqe_I 5 YGTGRRKEAVARVFLRPGN---GKVTVNGQDF 33 (128) T ss_dssp EECCEETTEEEEEEEEESS---CCEEESSSBH T ss_pred EEECCCCCEEEEEEEECCC---CEEEECCHHH T ss_conf 8725050589999998388---4499804267 No 26 >>1rxw_A Flap structure-specific endonuclease; helical clamp, helix-3 turn-helix, hydrophobic wedge, 3' flap binding site, hydrolase/DNA complex; 2.00A {Archaeoglobus fulgidus} (A:221-288) Probab=37.36 E-value=24 Score=15.65 Aligned_cols=36 Identities=14% Similarity=0.074 Sum_probs=30.3 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 589999999999889999999999999986399999 Q gi|254780753|r 38 NVIEAKMLMRERQHLDNAISFIKEIQDRLCDNLILL 73 (355) Q Consensus 38 D~~kAqkl~KE~s~L~~iV~~~~~l~~~l~Dl~eL~ 73 (355) -++.|.++.+++..++.+++..+++...+....... T Consensus 24 G~ktA~~li~~~~sle~i~~~~~~~~~~~~~~~~~f 59 (68) T 1rxw_A 24 GVKKALNYIKTYGDIFRALKALKVNIDHVEEIRNFF 59 (68) T ss_dssp CHHHHHHHHHHHSSHHHHHHHHTC----CHHHHHHH T ss_pred CHHHHHHHHHHHCCHHHHHHHHHHCHHHHHHHHHHC T ss_conf 789999999994999999998761427799999970 No 27 >>2spc_A Spectrin; cytoskeleton; 1.80A {Drosophila melanogaster} (A:) Probab=37.29 E-value=27 Score=15.28 Aligned_cols=61 Identities=13% Similarity=-0.001 Sum_probs=48.4 Q ss_pred CHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH Q ss_conf 989999999999998708660025899999999998899999999999-9998639999986 Q gi|254780753|r 15 DWDNAVQRLSFLNTKTEDPHLWQNVIEAKMLMRERQHLDNAISFIKEI-QDRLCDNLILLEL 75 (355) Q Consensus 15 Dle~~~~rl~eLE~~lsdp~fW~D~~kAqkl~KE~s~L~~iV~~~~~l-~~~l~Dl~eL~EL 75 (355) +++.+..=+.+.+..++.+++-+|...++.+.+++..++..+...... .+.......|+.. T Consensus 11 ~~~~~~~Wl~~~e~~l~~~~~g~~~~~~~~~l~~h~~~~~ei~~~~~~v~~l~~~g~~L~~~ 72 (107) T 2spc_A 11 DCELAESWMSAREAFLNADDDANAGGNVEALIKKHEDFDKAINGHEQKIAALQTVADQLIAQ 72 (107) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 99999999998999971888899999999999999999999997399999999999999870 No 28 >>2zkq_i 40S ribosomal protein S16E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} (i:) Probab=34.21 E-value=17 Score=16.70 Aligned_cols=29 Identities=10% Similarity=0.002 Sum_probs=19.7 Q ss_pred CCCCEEEEEEEEEEECCCCCCCCCCCCCCCEE Q ss_conf 66650356688788503442221112345503 Q gi|254780753|r 197 DSNSRRHTSFSSIWVYPVVDDSIEIEISESDC 228 (355) Q Consensus 197 ~s~gR~hTS~a~V~V~P~~~~~~~i~i~~~dl 228 (355) .+.|||.||.|.|.+.|--. .|.||..++ T Consensus 11 ~~~GrRKta~A~v~l~~G~G---~I~INg~~l 39 (146) T 2zkq_i 11 QVFGRKKTATAVAHCKRGNG---LIKVNGRPL 39 (146) T ss_dssp EECCBCSSCEEEEEEEESSS---CEEETTEEH T ss_pred EEECCCCEEEEEEEEEECCC---CEEECCCCH T ss_conf 89662602899999991676---489869778 No 29 >>3i1m_I 30S ribosomal protein S9; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_I* 3e1a_W 3e1c_W 1vs5_I 3i1o_I 3i1q_I 3i1s_I 3i1z_I 3i21_I 2qal_I* 1p6g_I 1p87_I 2aw7_I 2avy_I 2i2u_I 2i2p_I* 2qan_I* 2qb9_I* 2qbb_I* 2qbd_I ... (I:) Probab=33.91 E-value=27 Score=15.29 Aligned_cols=30 Identities=23% Similarity=0.414 Sum_probs=20.2 Q ss_pred CCCCCEEEEEEEEEEECCCCCCCCCCCCCCCEE Q ss_conf 666650356688788503442221112345503 Q gi|254780753|r 196 YDSNSRRHTSFSSIWVYPVVDDSIEIEISESDC 228 (355) Q Consensus 196 ~~s~gR~hTS~a~V~V~P~~~~~~~i~i~~~dl 228 (355) ..+.|||.||.|.|.+.|--. .|.||..++ T Consensus 6 ~~~~GkRKta~A~v~l~~G~G---~i~INg~~l 35 (130) T 3i1m_I 6 YYGTGRRKSSAARVFIKPGNG---KIVINQRSL 35 (130) T ss_dssp BCCCCCCSSCEEEEEEESSCS---CBCGGGSCS T ss_pred EEEECCCCCEEEEEEEEECCC---EEEECHHHH T ss_conf 887442425899999992676---697670777 No 30 >>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} (A:704-862) Probab=33.01 E-value=31 Score=14.82 Aligned_cols=22 Identities=9% Similarity=0.060 Sum_probs=10.7 Q ss_pred HHHHHHHHHHHHHHHHCCCCCC Q ss_conf 8999999999999870866002 Q gi|254780753|r 16 WDNAVQRLSFLNTKTEDPHLWQ 37 (355) Q Consensus 16 le~~~~rl~eLE~~lsdp~fW~ 37 (355) ++.+..++..+.+.|++|+|-+ T Consensus 106 l~kl~~ei~~~~~~L~n~~F~~ 127 (159) T 1gax_A 106 LKELLALAERSQRKLASPGFRE 127 (159) T ss_dssp HHHHHHHHHHHHHHHTSTTTSS T ss_pred HHHHHHHHHHHHHHHCCHHHHH T ss_conf 9999999999998767877777 No 31 >>2o1e_A YCDH; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.60A {Bacillus subtilis} (A:1-189,A:284-312) Probab=32.46 E-value=32 Score=14.76 Aligned_cols=21 Identities=24% Similarity=0.537 Sum_probs=15.8 Q ss_pred HCCCCCCCHHHHHHHHHHHHH Q ss_conf 086600258999999999988 Q gi|254780753|r 31 EDPHLWQNVIEAKMLMRERQH 51 (355) Q Consensus 31 sdp~fW~D~~kAqkl~KE~s~ 51 (355) -+|.+|-||..+..+...++. T Consensus 130 ~dPHiWldp~n~~~~a~~I~~ 150 (218) T 2o1e_A 130 XDPHVWLSPVLAQKEVKNITA 150 (218) T ss_dssp CCCGGGGSHHHHHHHHHHHHH T ss_pred CCCEEECCHHHHHHHHHHHHH T ss_conf 673010399999999999999 No 32 >>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} (A:82-171) Probab=29.66 E-value=35 Score=14.44 Aligned_cols=66 Identities=14% Similarity=0.078 Sum_probs=28.7 Q ss_pred CCHHHHHHHHHHHCCHHH-------HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 956899999886549899-------999999999987086600258999999999988999999999999998 Q gi|254780753|r 1 MKLSRQLNCLGGLFDWDN-------AVQRLSFLNTKTEDPHLWQNVIEAKMLMRERQHLDNAISFIKEIQDRL 66 (355) Q Consensus 1 ~EL~~rl~~l~~~fDle~-------~~~rl~eLE~~lsdp~fW~D~~kAqkl~KE~s~L~~iV~~~~~l~~~l 66 (355) ||+...+..+..-=|.+. +..++..+...++..=--.|...|....+++.-+.++.+.++.....+ T Consensus 15 ME~RE~leea~~~~D~~~L~~l~~e~~~~~~~~~~~l~~~~~~~d~~~A~~~~~kL~f~~kl~~ei~~~~~~L 87 (90) T 1fpo_A 15 LELREELDEIEQAKDEARLESFIKRVKKMFDTRHQLMVEQLDNETWDAAADTCRKLRFLDKLRSSAEQLEEKL 87 (90) T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTT T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 9998888763223559999999999999999999999987711059999999999999999999999999976 No 33 >>3bbn_I Ribosomal protein S9; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} (I:) Probab=29.58 E-value=27 Score=15.27 Aligned_cols=28 Identities=14% Similarity=0.154 Sum_probs=19.6 Q ss_pred CCCEEEEEEEEEEECCCCCCCCCCCCCCCEE Q ss_conf 6650356688788503442221112345503 Q gi|254780753|r 198 SNSRRHTSFSSIWVYPVVDDSIEIEISESDC 228 (355) Q Consensus 198 s~gR~hTS~a~V~V~P~~~~~~~i~i~~~dl 228 (355) +.|||.||.|.|.+.|-- -.|.||-.++ T Consensus 74 ~~GrRKta~A~V~l~~Gt---G~i~INg~~~ 101 (197) T 3bbn_I 74 GTGRRKCAIARVVLQEGT---GKFIINYRDA 101 (197) T ss_dssp CCCEETTEEEEEEEEESS---CCEEETTEEH T ss_pred EECCCCCEEEEEEEECCC---EEEEECCCCH T ss_conf 546880579999998374---2899999048 No 34 >>3jyv_I 40S ribosomal protein S16(A); eukaryotic ribosome, RACK1 protein, flexible fitting; HET: 2MG H2U M2G OMC OMG YYG PSU 5MC 7MG 5MU 1MA; 8.90A {Thermomyces lanuginosus} PDB: 1s1h_I (I:) Probab=29.56 E-value=24 Score=15.68 Aligned_cols=28 Identities=11% Similarity=0.048 Sum_probs=19.1 Q ss_pred CCCCEEEEEEEEEEECCCCCCCCCCCCCCCE Q ss_conf 6665035668878850344222111234550 Q gi|254780753|r 197 DSNSRRHTSFSSIWVYPVVDDSIEIEISESD 227 (355) Q Consensus 197 ~s~gR~hTS~a~V~V~P~~~~~~~i~i~~~d 227 (355) -+.|||.||.|.|.+.|-- -.|.||..+ T Consensus 3 ~~~GrRKta~A~v~l~~G~---G~I~INg~~ 30 (138) T 3jyv_I 3 QTFGKKKSATAVAHVKAGK---GLIKVNGSP 30 (138) T ss_dssp CCCCCSSSCEEEEEEEESC---CCEEETTEE T ss_pred EEECCCEEEEEEEEEECCC---CEEEECCCC T ss_conf 4166472089999998486---549999933 No 35 >>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} (A:281-366) Probab=29.40 E-value=8.1 Score=19.01 Aligned_cols=35 Identities=14% Similarity=0.156 Sum_probs=21.0 Q ss_pred EEECCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCC Q ss_conf 885034422211123455036998538886554427310 Q gi|254780753|r 209 IWVYPVVDDSIEIEISESDCRIDTYRASGAGGQHVNTTD 247 (355) Q Consensus 209 V~V~P~~~~~~~i~i~~~dl~i~~~rssg~ggq~vn~t~ 247 (355) |.+.++-.....+.+++.|+ ..|=|.|||||+... T Consensus 19 V~i~~e~~~~~~V~V~~~~l----s~AIGk~G~NvrLAs 53 (86) T 1k0r_A 19 VSVIDQTARAARVVVPDFQL----SLAIGKEGQNARLAA 53 (86) T ss_dssp EEEEETTTTEEEEEECGGGH----HHHHCGGGHHHHHHH T ss_pred EEEECCCCCEEEEEECHHHH----HHHHCCCCHHHHHHH T ss_conf 99875888779999881353----576379982699999 No 36 >>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} (P:277-344) Probab=27.12 E-value=8.4 Score=18.88 Aligned_cols=34 Identities=15% Similarity=0.244 Sum_probs=22.8 Q ss_pred EEECCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCC Q ss_conf 88503442221112345503699853888655442731 Q gi|254780753|r 209 IWVYPVVDDSIEIEISESDCRIDTYRASGAGGQHVNTT 246 (355) Q Consensus 209 V~V~P~~~~~~~i~i~~~dl~i~~~rssg~ggq~vn~t 246 (355) |.+..+-+....+.+++.|+ ..|=|.+||||+.. T Consensus 19 V~i~~e~~~~~~v~V~~~~~----s~AIGk~G~Nv~LA 52 (68) T 1hh2_P 19 VEILDKENKAARVLVPPTQL----SLAIGKGGQNARLA 52 (68) T ss_dssp EEEEETTTTEEEEEECTTSH----HHHHCGGGHHHHHH T ss_pred EEEECCCCCEEEEEECHHHH----HHHHCCCCCHHHHH T ss_conf 99873889879999891450----37637997079999 No 37 >>3cx3_A Lipoprotein; zinc-binding, transport, lipid binding protein, metal binding protein; 2.40A {Streptococcus pneumoniae} (A:1-176,A:262-284) Probab=26.48 E-value=40 Score=14.06 Aligned_cols=25 Identities=20% Similarity=0.202 Sum_probs=16.8 Q ss_pred HHHHCCCCCCCHHHHHHHHHHHHHH Q ss_conf 9870866002589999999999889 Q gi|254780753|r 28 TKTEDPHLWQNVIEAKMLMRERQHL 52 (355) Q Consensus 28 ~~lsdp~fW~D~~kAqkl~KE~s~L 52 (355) .---+|.+|-||..+..+...++.- T Consensus 114 ~~~~dPHiWldp~n~~~~a~~I~~~ 138 (199) T 3cx3_A 114 KTLYDPHTWLDPEKAGEEAQIIADK 138 (199) T ss_dssp -CCBCCCGGGSHHHHHHHHHHHHHH T ss_pred CCCCCEEEECCCCCHHHHHHHHHHH T ss_conf 3577501403640178899989989 No 38 >>2prs_A High-affinity zinc uptake system protein ZNUA; protein consists of two (beta/ALFA)4 domains, metal transport; 1.70A {Escherichia coli} PDB: 2osv_A 2ps0_A 2ps3_A 2ps9_A 2ogw_A (A:1-172) Probab=25.48 E-value=41 Score=13.94 Aligned_cols=27 Identities=15% Similarity=0.044 Sum_probs=18.5 Q ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHHH Q ss_conf 999987086600258999999999988 Q gi|254780753|r 25 FLNTKTEDPHLWQNVIEAKMLMRERQH 51 (355) Q Consensus 25 eLE~~lsdp~fW~D~~kAqkl~KE~s~ 51 (355) .....--+|.+|-||..+..+.+.++. T Consensus 108 ~~~~~~~dPH~Wldp~~~~~~a~~I~~ 134 (172) T 2prs_A 108 DHHHGDFNMHLWLSPEIARATAVAIHG 134 (172) T ss_dssp ----CCCCCCGGGCHHHHHHHHHHHHH T ss_pred CCCCCCCCHHHHHCCHHHHHHHHHHHH T ss_conf 223577761366463778999999999 No 39 >>1a76_A Flap endonuclease-1 protein; 5'-3' EXO/endo nuclease, DNA replication, RTH, RAD27, DNA repair; 2.00A {Methanococcus jannaschii} (A:210-274) Probab=25.47 E-value=41 Score=13.93 Aligned_cols=30 Identities=13% Similarity=-0.048 Sum_probs=24.5 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 589999999999889999999999999986 Q gi|254780753|r 38 NVIEAKMLMRERQHLDNAISFIKEIQDRLC 67 (355) Q Consensus 38 D~~kAqkl~KE~s~L~~iV~~~~~l~~~l~ 67 (355) -|+.|.++.+++..++.+++.++.+..... T Consensus 25 GpKtA~~li~~~~~le~i~~~l~~~~~~~~ 54 (65) T 1a76_A 25 GFKRAYELVRSGVAKDVLKKEVEYYDEIKR 54 (65) T ss_dssp CHHHHHHHHHHTCHHHHHHHHSTTHHHHHH T ss_pred EHHHHHHHHHHCCCHHHHHHHHHHHHHHHH T ss_conf 299999999972999999997652689999 No 40 >>2pih_A Protein YMCA; regulate community development, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} (A:) Probab=25.33 E-value=42 Score=13.92 Aligned_cols=51 Identities=16% Similarity=0.202 Sum_probs=24.1 Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 498999999999999870866002589999999999889999999999999 Q gi|254780753|r 14 FDWDNAVQRLSFLNTKTEDPHLWQNVIEAKMLMRERQHLDNAISFIKEIQD 64 (355) Q Consensus 14 fDle~~~~rl~eLE~~lsdp~fW~D~~kAqkl~KE~s~L~~iV~~~~~l~~ 64 (355) .+-.++.....+|...+...+-..+-.+|.+..+.-..+...+..|+..+. T Consensus 4 i~~~~I~d~A~eL~~aI~~seEy~~yk~a~~~i~~d~ea~~li~ef~~~q~ 54 (151) T 2pih_A 4 YSKKDIVQQARNLAKXISETEEVDFFKRAEAQINENDKVSTIVNQIKALQK 54 (151) T ss_dssp BCHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH T ss_pred CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH T ss_conf 309999999999999987399999999999999709999999999999999 No 41 >>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A* (A:1-58,A:235-392) Probab=25.07 E-value=42 Score=13.88 Aligned_cols=113 Identities=9% Similarity=0.073 Sum_probs=57.8 Q ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHH-HHHHHH------------HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH Q ss_conf 999870866002589999999999889-999999------------9999999863999998631000000234566765 Q gi|254780753|r 26 LNTKTEDPHLWQNVIEAKMLMRERQHL-DNAISF------------IKEIQDRLCDNLILLELALEEDDCSILQETSDNL 92 (355) Q Consensus 26 LE~~lsdp~fW~D~~kAqkl~KE~s~L-~~iV~~------------~~~l~~~l~Dl~eL~ELa~ee~D~el~eE~~~el 92 (355) +-.-|+.|.+-.-...+.++.++.... +.+... +.---..+--+.+.+++..++..+...+-....- T Consensus 24 v~~a~~~~~~~hr~~~f~~~~~~~~~~l~~~f~t~~~~~~~~~~~~gTp~v~li~aL~~aL~~i~~eG~e~~~~r~~~l~ 103 (216) T 2z9v_A 24 VLRGLGRTVLYDYDPAFQLLYEKVVDKAQKAMRLSENAWSRDKPFPFTPSVSEINGLDVALDLYLNEGPEAVWARHALTA 103 (216) T ss_dssp HHHHTTSCCCCTTSHHHHHHHHHHHHHHHHHTTCSTTTTSTTSCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH T ss_pred HHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99985676777688999999999999999996899654024676667886999999999999999876789999999999 Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHHH Q ss_conf 55774015899887630345766248998217787027789999999 Q gi|254780753|r 93 QRIKLEVEYKQFESLLSGEADSNDAYLEVHAGAGGTESQDWANMLLR 139 (355) Q Consensus 93 ~~l~~~le~LE~~~Lls~e~D~~nailEI~AGaGG~EA~dwA~~L~r 139 (355) ..+...++++-...++.++.+..+.++.|... .|.++..+...|.. T Consensus 104 ~~l~~~l~~lg~~~~~~~~~~~~~~v~~~~~p-~g~~~~~i~~~L~~ 149 (216) T 2z9v_A 104 KAMRAGVTAMGLSVWAASDSIASPTTTAVRTP-DGVDEKALRQAARA 149 (216) T ss_dssp HHHHHHHHHTTCCBSSSSGGGBCTTEEEEECC-TTCCHHHHHHHHHH T ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCEEEECC-CCCCHHHHHHHHHH T ss_conf 98787654035540145531248863244278-99999999999997 No 42 >>3bbo_I Ribosomal protein L6; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Arabidopsis thaliana} (I:1-123) Probab=24.96 E-value=29 Score=14.99 Aligned_cols=47 Identities=23% Similarity=0.334 Sum_probs=35.7 Q ss_pred CCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCEEEEEEECCCH-HHHHHHHH Q ss_conf 42221112345503699853888655442731003588746974-77665555 Q gi|254780753|r 215 VDDSIEIEISESDCRIDTYRASGAGGQHVNTTDSAVRITHIPTG-VVVQCQQE 266 (355) Q Consensus 215 ~~~~~~i~i~~~dl~i~~~rssg~ggq~vn~t~savri~H~ptg-i~v~~q~~ 266 (355) +++.++++++.+.+.| .||-|+-.-+...-|-+.+...+ +++.+..+ T Consensus 53 IP~~V~V~i~~~~itV-----kGp~G~Ls~~~~~~v~~~~~e~~~i~v~~~~~ 100 (123) T 3bbo_I 53 VPSNVTIALEGQDLKV-----KGPLGELALTYPREVELTKEESGFLRVKKTVE 100 (123) T ss_dssp CSTTSCEEESSSEEEE-----CCSSCCEEEECCSSCEEEECSSSCEEEECSSC T ss_pred CCCCCEEEEECCEEEE-----ECCCEEEEEEECCCCEEEEECCCEEEEECCCC T ss_conf 7999889997999999-----86798999995787317873263488713322 No 43 >>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} (A:158-251) Probab=24.53 E-value=11 Score=18.00 Aligned_cols=25 Identities=16% Similarity=0.226 Sum_probs=16.0 Q ss_pred CCCCCCCCCEEEEEEECCCCCCCCCCCCC Q ss_conf 21112345503699853888655442731 Q gi|254780753|r 218 SIEIEISESDCRIDTYRASGAGGQHVNTT 246 (355) Q Consensus 218 ~~~i~i~~~dl~i~~~rssg~ggq~vn~t 246 (355) ...+.+++.++ ..|=|.+||||+.. T Consensus 28 ~~~v~V~~~~l----s~AIGk~G~NvrLA 52 (94) T 2asb_A 28 AARVVVPDFQL----SLAIGKEGQNARLA 52 (94) T ss_dssp EEEEEECGGGH----HHHHCGGGHHHHHH T ss_pred EEEEEECCHHH----HHHHCCCCEEHHHH T ss_conf 79999684143----23334687509999 No 44 >>1v33_A DNA primase small subunit; nucleotidyl transferase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: DNA; 1.80A {Pyrococcus horikoshii} (A:1-179,A:304-344) Probab=24.51 E-value=23 Score=15.82 Aligned_cols=92 Identities=12% Similarity=0.094 Sum_probs=59.3 Q ss_pred CCCCCCCC-----EEEEEECC------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCC Q ss_conf 03457662-----48998217------78702778999999989999877531134442054545850134688505561 Q gi|254780753|r 109 SGEADSND-----AYLEVHAG------AGGTESQDWANMLLRMYTRWAEKRKFKTEALEIHDGEEAGIKSATLLIKGPNA 177 (355) Q Consensus 109 s~e~D~~n-----ailEI~AG------aGG~EA~dwA~~L~rMY~r~ae~~gwk~evi~~~~~e~~GiK~~~~~I~G~~a 177 (355) ..|.+.++ -+..|-|- +++.++.....++-.|.. .++++...--+.=|+|.+.+-.+|.|. T Consensus 99 ~~P~~~k~~~~~ELVFDIDaddy~~~r~cc~~~~iC~~C~~~~~~--------av~~L~~~L~eDFGfk~i~~vFSGRG~ 170 (220) T 1v33_A 99 EKPQEMEGWLGTELVFDIDAKDLPLRRCEHEPGTVCPICLNDAKE--------IVRDTVIILREELGFNDIHIIYSGRGY 170 (220) T ss_dssp EETTTTEEEEEECEEEEEEGGGCSSCSSCSCTTCCCHHHHHHHHH--------HHHHHHHHHHHTTCCCCEEEEECSSEE T ss_pred HCHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHH--------HHHHHHHHHHHCCCCCCEEEEECCCEE T ss_conf 297761685555247872376578754344651079999999999--------999999999861698503788408768 Q ss_pred CHHHEEEC---CEEEEEEECCCCCCCEEEEEEEEEEE Q ss_conf 00000101---20689873046666503566887885 Q gi|254780753|r 178 YGWLKGEQ---GVHRLVRISPYDSNSRRHTSFSSIWV 211 (355) Q Consensus 178 yg~Lk~E~---GvHRv~Ri~~~~s~gR~hTS~a~V~V 211 (355) ==|..-|. -+|||+|+|-.=-.+ |++..+.| T Consensus 171 Hv~V~De~at~D~~rliRlp~slhgk---~gl~v~~~ 204 (220) T 1v33_A 171 HIRVLDEWATVDLKRILRLPSTLHSK---VGLIAKYV 204 (220) T ss_dssp EEEECCHHHHHCTTCEEECTTSEETT---TTEECCEE T ss_pred EEEECCHHHCCCCCCEEECCCCCCCC---CCCEEEEC T ss_conf 99856988889998534489875488---88778971 No 45 >>1m0d_A Endonuclease, endodeoxyribonuclease I; holliday junction resolvase, homodimer, domain swapped, composite active site, hydrolase; 1.90A {Enterobacteria phage T7} (A:32-138) Probab=24.49 E-value=29 Score=15.04 Aligned_cols=14 Identities=29% Similarity=0.432 Sum_probs=10.7 Q ss_pred HHHHHHHHHHHHHH Q ss_conf 89999877531134 Q gi|254780753|r 140 MYTRWAEKRKFKTE 153 (355) Q Consensus 140 MY~r~ae~~gwk~e 153 (355) -|-.||+++||.+- T Consensus 66 tYa~Wc~khGf~~a 79 (107) T 1m0d_A 66 SYGEFCEKHGIKFA 79 (107) T ss_dssp BHHHHHHHHTCCEE T ss_pred CHHHHHHHCCCCCC T ss_conf 49999987399745 No 46 >>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline sarcoma virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* (A:110-194) Probab=24.15 E-value=27 Score=15.31 Aligned_cols=49 Identities=10% Similarity=0.106 Sum_probs=29.6 Q ss_pred CCCCEEEEEEECCCCCCCCCCCCCCEEEEEEECCCHHHHHH--------HHHHHHHHHHHHHHH Q ss_conf 34550369985388865544273100358874697477665--------555522467999999 Q gi|254780753|r 223 ISESDCRIDTYRASGAGGQHVNTTDSAVRITHIPTGVVVQC--------QQERSQHKNKAQAWN 278 (355) Q Consensus 223 i~~~dl~i~~~rssg~ggq~vn~t~savri~H~ptgi~v~~--------q~~rsq~~Nk~~a~~ 278 (355) |+.+|+.+.-.=.+|+.| +--+-+|.+||..|.+ ++.+.++.+-...|+ T Consensus 2 i~~~~~~~~~~lG~G~fg-------~V~~~~~~~~~~~vAvK~l~~~~~~~~~~~f~~Ev~~l~ 58 (85) T 3cbl_A 2 LNHEDLVLGEQIGRGNFG-------EVFSGRLRADNTLVAVKSCRETLPPDLKAKFLQEARILK 58 (85) T ss_dssp CCGGGEEEEEEEEEETTE-------EEEEEEETTTCCEEEEEECCTTSCHHHHTTTTHHHHHHT T ss_pred ECHHHCEEEEEEEECCCC-------EEEEEEECCCCEEEEEEEECCCCCHHHHHHHHHHHHHHH T ss_conf 653549853488757998-------899999999990999999880048679999999999997 No 47 >>1e85_A Cytochrome C'; electron transport, heme, 4-helix bundle, nitric oxide; HET: HEC; 1.35A {Achromobacter xylosoxidans} (A:) Probab=23.47 E-value=45 Score=13.68 Aligned_cols=48 Identities=15% Similarity=0.275 Sum_probs=31.7 Q ss_pred HHHHHHHHHHHC------CHHHHHHHHHHHHHHH---------------HCCCCCCCHHHHHHHHHHHH Q ss_conf 689999988654------9899999999999987---------------08660025899999999998 Q gi|254780753|r 3 LSRQLNCLGGLF------DWDNAVQRLSFLNTKT---------------EDPHLWQNVIEAKMLMRERQ 50 (355) Q Consensus 3 L~~rl~~l~~~f------Dle~~~~rl~eLE~~l---------------sdp~fW~D~~kAqkl~KE~s 50 (355) +...+..|+.|+ |-+........|.... +.|.+|.|+..+......+. T Consensus 19 ~~~~~~~l~~m~kg~~p~da~~~~~~a~~l~~~a~~~~~~Fp~gs~~t~Akp~IW~~~~~F~~~~~~~~ 87 (127) T 1e85_A 19 MASHFGRMTPVVKGQAPYDAAQIKANVEVLKTLSALPWAAFGPGTEGGDARPEIWSDAASFKQKQQAFQ 87 (127) T ss_dssp HHHHHHTTHHHHTTSSCCCHHHHHHHHHHHHHHHTSSGGGSCTTCCCTTBCTHHHHTHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCHHHHCCHHHHHHHHHHHH T ss_conf 999999999997899988999999999999998414086479999988758898809998999999999 No 48 >>1s35_A Beta-I spectrin, spectrin beta chain, erythrocyte; two repeats of spectrin, alpha helical linker region, 3- helix coiled-coils, beta spectrin; 2.40A {Homo sapiens} (A:1-120) Probab=22.97 E-value=46 Score=13.61 Aligned_cols=60 Identities=15% Similarity=0.214 Sum_probs=46.7 Q ss_pred CHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH Q ss_conf 98999999999999870866002589999999999889999999999999986399-9998 Q gi|254780753|r 15 DWDNAVQRLSFLNTKTEDPHLWQNVIEAKMLMRERQHLDNAISFIKEIQDRLCDNL-ILLE 74 (355) Q Consensus 15 Dle~~~~rl~eLE~~lsdp~fW~D~~kAqkl~KE~s~L~~iV~~~~~l~~~l~Dl~-eL~E 74 (355) +++.+..=+.+.+..+...+.-+|...++.+.+.+..+...+..+......+.+.. .+++ T Consensus 8 ~~~~l~~Wl~~~e~~l~~~~~~~~~~~~~~~~~~~~~l~~ei~~~~~~~~~l~~~g~~L~~ 68 (120) T 1s35_A 8 DLDDFQAWLSITQKAVASEDMPESLPEAEQLLQQHAGIKDEIDGHQDSYQRVKESGEKVIQ 68 (120) T ss_dssp HHHHHHHHHHHHHHHHHCCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 9999999999999997287889999999999999999999999988799999999887764 No 49 >>2jya_A AGR_C_3324P, uncharacterized protein ATU1810; protein with unknown function ATU1810, ontario centre for structural proteomics; NMR {Agrobacterium tumefaciens str} (A:) Probab=22.60 E-value=23 Score=15.76 Aligned_cols=14 Identities=7% Similarity=0.304 Sum_probs=7.2 Q ss_pred HHHHHHHHHHHHHH Q ss_conf 99877531134442 Q gi|254780753|r 143 RWAEKRKFKTEALE 156 (355) Q Consensus 143 r~ae~~gwk~evi~ 156 (355) .||+++||.++|.+ T Consensus 66 ayaek~G~~y~V~~ 79 (106) T 2jya_A 66 AYAQRKGIEYRVIL 79 (106) T ss_dssp HHHHHHTCEEEECC T ss_pred HHHHHCCCEEEEEC T ss_conf 99998796599981 No 50 >>1u5p_A Spectrin alpha chain, brain; alpha spectrin, two repeats of spectrin, alpha-helical linker region, 3-helix coiled coil, structural protein; 2.00A {Gallus gallus} (A:1-133) Probab=22.53 E-value=47 Score=13.55 Aligned_cols=57 Identities=14% Similarity=0.074 Sum_probs=46.2 Q ss_pred CHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 989999999999998708660025899999999998899999999999999863999 Q gi|254780753|r 15 DWDNAVQRLSFLNTKTEDPHLWQNVIEAKMLMRERQHLDNAISFIKEIQDRLCDNLI 71 (355) Q Consensus 15 Dle~~~~rl~eLE~~lsdp~fW~D~~kAqkl~KE~s~L~~iV~~~~~l~~~l~Dl~e 71 (355) +++.+..-+.+.+..++.+++-.|+..++.+.+++..+...+.....-...+..... T Consensus 11 ~~~~~~~Wl~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~ 67 (133) T 1u5p_A 11 GIKDFDFWLSEVEALLASEDYGKDLASVNNLLKKHQLLEADISAHEDRLKDLNSQAD 67 (133) T ss_dssp HHHHHHHHHHHHHHHHTCCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 999999999999998608787999999999999999999999996889987888999 No 51 >>2yvk_A Methylthioribose-1-phosphate isomerase; methionine salvage pathway,; HET: MRU; 2.40A {Bacillus subtilis} PDB: 2yrf_A* (A:) Probab=21.77 E-value=35 Score=14.45 Aligned_cols=50 Identities=12% Similarity=0.111 Sum_probs=35.7 Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC Q ss_conf 66248998217787027789999999899998775311344420545458 Q gi|254780753|r 114 SNDAYLEVHAGAGGTESQDWANMLLRMYTRWAEKRKFKTEALEIHDGEEA 163 (355) Q Consensus 114 ~~nailEI~AGaGG~EA~dwA~~L~rMY~r~ae~~gwk~evi~~~~~e~~ 163 (355) ..+..|=.++.+|..+..+|-.-+.-++.-+-..+.+++-+.+..|..+| T Consensus 172 ~~g~~ILT~~~S~~v~~~l~~ta~~~i~~a~~~gk~~~V~v~EsrP~~eG 221 (374) T 2yvk_A 172 KKGDRIMTICNAGSIATSRYGTALAPFYLAKQKDLGLHIYACETRPVLQG 221 (374) T ss_dssp CTTCEEEECSCCSTTTSSSSCSTTHHHHHHHHTTCCCEEEEECCTTTTHH T ss_pred CCCCEEEEECCCCCEEEEEHHHHHHHHHHHHCCCCCCEEEECCCCCCCCH T ss_conf 48988977427741132111215677887641465514663244334521 No 52 >>1qys_A TOP7; alpha-beta, novel fold, de novo protein; 2.50A {Computationally designed sequence} (A:) Probab=21.61 E-value=49 Score=13.43 Aligned_cols=61 Identities=10% Similarity=0.221 Sum_probs=39.4 Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEE Q ss_conf 57740158998876303457662489982177870277899999998999987753113444205454585013468850 Q gi|254780753|r 94 RIKLEVEYKQFESLLSGEADSNDAYLEVHAGAGGTESQDWANMLLRMYTRWAEKRKFKTEALEIHDGEEAGIKSATLLIK 173 (355) Q Consensus 94 ~l~~~le~LE~~~Lls~e~D~~nailEI~AGaGG~EA~dwA~~L~rMY~r~ae~~gwk~evi~~~~~e~~GiK~~~~~I~ 173 (355) +|++.+.+||..+- ..-.+++-+.|.|- --.+|--|++.|.|.+.+ -|||.+.+.+. T Consensus 28 ELer~L~ELe~~l~---r~GAr~V~ItIsA~-~~~qA~~~~~li~r~~~~-------------------LGY~DINV~~~ 84 (106) T 1qys_A 28 ELQKVLNELXDYIK---KQGAKRVRISITAR-TKKEAEKFAAILIKVFAE-------------------LGYNDINVTFD 84 (106) T ss_dssp HHHHHHHHHHHHHH---HHCCSEEEEEEECS-SHHHHHHHHHHHHHHHHH-------------------TTCCEEEEEEE T ss_pred HHHHHHHHHHHHHH---HCCCCEEEEEEEEC-CHHHHHHHHHHHHHHHHH-------------------HCCCCEEEEEC T ss_conf 99999999999998---71764589999966-678899999999999998-------------------39763189985 Q ss_pred CCCC Q ss_conf 5561 Q gi|254780753|r 174 GPNA 177 (355) Q Consensus 174 G~~a 177 (355) |.-+ T Consensus 85 G~~V 88 (106) T 1qys_A 85 GDTV 88 (106) T ss_dssp TTEE T ss_pred CCEE T ss_conf 8189 No 53 >>3cnf_A VP1; cytoplasmic polyhedrosis virus, capsid protein, turret protein, polyhedrin-binding domain, guanylyltransferase domain; 3.88A {Bombyx mori cypovirus 1} (A:1083-1230) Probab=21.48 E-value=24 Score=15.57 Aligned_cols=46 Identities=20% Similarity=0.251 Sum_probs=28.1 Q ss_pred CCCCCEEEEEEECCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHH Q ss_conf 234550369985388865544273100358874697477665555522 Q gi|254780753|r 222 EISESDCRIDTYRASGAGGQHVNTTDSAVRITHIPTGVVVQCQQERSQ 269 (355) Q Consensus 222 ~i~~~dl~i~~~rssg~ggq~vn~t~savri~H~ptgi~v~~q~~rsq 269 (355) .|++.=+.++.- -+=---|.||+.. -|--||-|||+.+.+-.+|-- T Consensus 9 ~vP~GYv~~~YA-~~LF~S~~~N~~~-R~~Y~~~~~G~~~~~~t~RP~ 54 (148) T 3cnf_A 9 DVPEGYVAVQYA-HRLFSSSLANKRN-RVTYTHPPTGMAYPSPTGRPH 54 (148) T ss_pred CCCCCEEEEEHH-HHHHHHHHHCCCC-EEEEECCCCCEEEECCCCCCE T ss_conf 687530643056-6787664413342-467742677536305367970 No 54 >>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), SH3 domain, endocytosis; 1.56A {Homo sapiens} PDB: 1ki1_B (A:) Probab=20.81 E-value=24 Score=15.63 Aligned_cols=65 Identities=12% Similarity=0.095 Sum_probs=49.1 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCHHHEEECCEEE-EEEECCCC Q ss_conf 999999989999877531134442054545850134688505561000001012068-98730466 Q gi|254780753|r 133 WANMLLRMYTRWAEKRKFKTEALEIHDGEEAGIKSATLLIKGPNAYGWLKGEQGVHR-LVRISPYD 197 (355) Q Consensus 133 wA~~L~rMY~r~ae~~gwk~evi~~~~~e~~GiK~~~~~I~G~~ayg~Lk~E~GvHR-v~Ri~~~~ 197 (355) .....|.+|..||....=...+++...-....++...-...+......|...+-..+ |||+|.+- T Consensus 111 ~~~~~~~~Y~~Y~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~l~s~li~PvqRi~rY~ 176 (510) T 3jzy_A 111 AELSHMQAYIRFCSCQLNGAALLQQKTDEDTDFKEFLKKLASDPRCKGMPLSSFLLKPMQRITRYP 176 (510) T ss_dssp ------------------------------------------------------------------ T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH T ss_conf 987777999999997899999999987307899999998622732256878999988887776767 Done!