HHsearch results for GI: 254780753 and protein with PDBid: 1j26_A
>1j26_A Immature colon carcinoma transcript 1; peptide chain release factors, RF-1, the GGQ motif, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.4.1
Probab=99.60 E-value=3.9e-16 Score=134.56 Aligned_cols=68 Identities=25% Similarity=0.334 Sum_probs=61.7
Q ss_pred CCCCCCCCCEEEEEEECCCCCCCCCCCCCCEEEEEEECCC-------------------------HHHHHHHHHHHHHHH
Q ss_conf 2111234550369985388865544273100358874697-------------------------477665555522467
Q gi|254780753|r 218 SIEIEISESDCRIDTYRASGAGGQHVNTTDSAVRITHIPT-------------------------GVVVQCQQERSQHKN 272 (355)
Q Consensus 218 ~~~i~i~~~dl~i~~~rssg~ggq~vn~t~savri~H~pt-------------------------gi~v~~q~~rsq~~N 272 (355)
.....|+++++.+.+.|||||||||||||+|+|.|++.+. +|+|.||..|||++|
T Consensus 12 ~~~~~Ip~~~i~~~f~RSsGPGGQ~VNK~~TkV~L~~~l~~~~~l~~~~~~~l~~~~~~~i~~~g~l~I~s~~~RsQ~~N 91 (112)
T 1j26_A 12 QASSYIPLDRLSISYCRSSGPGGQNVNKVNSKAEVRFHLASADWIEEPVRQKIALTHKNKINKAGELVLTSESSRYQFRN 91 (112)
T ss_dssp SSCCCCCTTTSEEEEECCCCSSSSCCSSCCCEEEEEEEGGGCTTSCHHHHHHHHHHTTTTBCSSSEEEEEECCCSSHHHH
T ss_pred HHCCCCCHHHEEEEEEECCCCCCCCCCCCCCCEEEEECHHHCCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHH
T ss_conf 40470487893799887679999844430303058976232357999999999998637366698399998876799999
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9999999999999
Q gi|254780753|r 273 KAQAWNMLRAKLY 285 (355)
Q Consensus 273 k~~a~~~l~~~l~ 285 (355)
|+.|+.+|...|.
T Consensus 92 r~~a~~kL~~li~ 104 (112)
T 1j26_A 92 LAECLQKIRDMIA 104 (112)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
T ss_conf 9999999999999