HHsearch results for GI: 254780753 and protein with PDBid: 2b3t_B
>2b3t_B RF-1, peptide chain release factor 1; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: e.38.1.1
Probab=100.00 E-value=0 Score=914.44 Aligned_cols=336 Identities=34% Similarity=0.481 Sum_probs=311.2
Q ss_pred CHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 98999999999999870866002589999999999889999999999999986399999863100000023456676555
Q gi|254780753|r 15 DWDNAVQRLSFLNTKTEDPHLWQNVIEAKMLMRERQHLDNAISFIKEIQDRLCDNLILLELALEEDDCSILQETSDNLQR 94 (355)
Q Consensus 15 Dle~~~~rl~eLE~~lsdp~fW~D~~kAqkl~KE~s~L~~iV~~~~~l~~~l~Dl~eL~ELa~ee~D~el~eE~~~el~~ 94 (355)
.++.+..|+.+|+++|++|+||+||++|++++||++.|+++++.|+.|....+++.++.+|+.++++.++. .+++..
T Consensus 8 kLe~i~~r~~eLe~~lsdp~~w~D~~~a~~l~kE~~~L~~~v~~~~~~~~~~~~l~el~el~~d~e~~ela---~ee~~~ 84 (360)
T 2b3t_B 8 KLEALHERHEEVQALLGDAQTIADQERFRALSREYAQLSDVSRCFTDWQQVQEDIETAQMMLDDPEMREMA---QDELRE 84 (360)
T ss_dssp CSHHHHHHHHHHHHHHHHHTTSSCCSSHHHHHHHHHHHHHHHHHHHHHTTCC----------------------------
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH---HHHHHH
T ss_conf 99999999999999871986200999999999999999999999999999999899999874484018999---999999
Q ss_pred HHHHH----HHHHHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEE
Q ss_conf 77401----58998876303457662489982177870277899999998999987753113444205454585013468
Q gi|254780753|r 95 IKLEV----EYKQFESLLSGEADSNDAYLEVHAGAGGTESQDWANMLLRMYTRWAEKRKFKTEALEIHDGEEAGIKSATL 170 (355)
Q Consensus 95 l~~~l----e~LE~~~Lls~e~D~~nailEI~AGaGG~EA~dwA~~L~rMY~r~ae~~gwk~evi~~~~~e~~GiK~~~~ 170 (355)
+...+ +++++.+||++|+|.+||||||||||||+||||||+||||||+|||+++||++++++.++|+.||||+|+|
T Consensus 85 ~~~~l~~l~~~l~~~Ll~~~~~D~~nailEIraGaGG~EA~~fA~~L~rMY~r~ae~~gwk~eii~~~~~e~~G~k~~~~ 164 (360)
T 2b3t_B 85 AKEKSEQLEQQLQVLLLPKDPDDERNAFLEVRAGTGGDEAALFAGDLFRMYSRYAEARRWRVEIMSASEGEHGGYKEIIA 164 (360)
T ss_dssp ----------CCCCCCCSCCSGGGSCEEEEEEECSSSHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSEEEEEE
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCEEEEEE
T ss_conf 99999999999999707999564558499992588846799999999999999997658852784421567786258999
Q ss_pred EEECCCCCHHHEEECCEEEEEEECCCCCCCEEEEEEEEEEECCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCEEE
Q ss_conf 85055610000010120689873046666503566887885034422211123455036998538886554427310035
Q gi|254780753|r 171 LIKGPNAYGWLKGEQGVHRLVRISPYDSNSRRHTSFSSIWVYPVVDDSIEIEISESDCRIDTYRASGAGGQHVNTTDSAV 250 (355)
Q Consensus 171 ~I~G~~ayg~Lk~E~GvHRv~Ri~~~~s~gR~hTS~a~V~V~P~~~~~~~i~i~~~dl~i~~~rssg~ggq~vn~t~sav 250 (355)
.|+|+||||+||+|+|||||||||||+++||+|||||+|+|+|++++.++++|+|+||+|||||||||||||||||+|||
T Consensus 165 ~I~G~~ayg~Lk~EsGVHRvqRvp~~~~~~r~hTs~~~v~v~p~~~~~~~~~i~~~dl~i~t~RssG~GGQ~VNkt~sAV 244 (360)
T 2b3t_B 165 KISGDGVYGRLKFESGGHRVQRVPATESQGRIHTSACTVAVMPELPDAELPDVNPADLRIDTFRSSGAGGQHVNTTDSAI 244 (360)
T ss_dssp EECSSSCHHHHGGGCEEEEEEECCTTCSSCCCEEEEEEEECCBCCCTTTCCCCCSSSEEEEECCSSCCCTTTCCCSSEEE
T ss_pred EEECCCHHHHHHHCCCCEEEEEECCCCCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCHHHCE
T ss_conf 99757612455434786269974788888826777779999557775300142711156998777999987766131212
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCCCCEEEEECCCCCCCCCCCCC
Q ss_conf 88746974776655555224679999999999999999999999999987413-32332221013015856833111147
Q gi|254780753|r 251 RITHIPTGVVVQCQQERSQHKNKAQAWNMLRAKLYELELQKREEIANIGESSK-TEIGWGRQIRSYVLQPYQMVKDLRTN 329 (355)
Q Consensus 251 ri~H~ptgi~v~~q~~rsq~~Nk~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~-~~~~~g~~iRtY~~~p~~~v~DhR~~ 329 (355)
||||+||||+|+||++||||+||++||++|++|||+++.+++.++....|..+ +..+||+||||||| ||+||||||||
T Consensus 245 RitH~PTGi~v~~q~eRSQ~~Nk~~A~~~L~~kl~~~~~~~~~~~~~~~rk~~vg~~~rse~IRtYn~-p~~~V~DhR~~ 323 (360)
T 2b3t_B 245 RITHLPTGIVVECQDERSQHKNKAKALSVLGARIHAAEMAKRQQAEASTRRNLLGSGDRSDRNRTYNF-PQGRVTDHRIN 323 (360)
T ss_dssp EEEETTTCCEEEEEESSCHHHHHHHHHHHHHHHHTTTTTTSCC------CCC-------CCEEEEEET-TTTEEEEGGGT
T ss_pred EEEECCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEC-CCCCCHHHCCC
T ss_conf 78965887699972702479999999999999999999999999999987600400123375274517-97764431458
Q ss_pred CEECCHHHHHCCCHHHHHHHHHHCC
Q ss_conf 2507977871897799999997225
Q gi|254780753|r 330 IEKTSPSDVLDGDLDDFMKATLAIK 354 (355)
Q Consensus 330 ~~~~~~~~vl~G~ld~~i~a~l~~~ 354 (355)
++++|++.||+|+||+||+|||.|.
T Consensus 324 ~~~~~~~~vl~G~ld~~i~a~~~~~ 348 (360)
T 2b3t_B 324 LTLYRLDEVMEGKLDMLIEPIIQEH 348 (360)
T ss_dssp EEESCHHHHHHTCTHHHHHHHHHHH
T ss_pred CEECCHHHHHCCCHHHHHHHHHHHH
T ss_conf 8777835764987299999999999