HHSEARCH alignment of GI: 254780753 and SCOP domain: d1rq0a_

Alignment
>d1rq0a_ e.38.1.1 (A:) Peptide chain release factor 1, RF1 {Thermotoga maritima [TaxId: 2336]}
Probab=100.00  E-value=0  Score=861.49  Aligned_cols=321  Identities=35%  Similarity=0.558  Sum_probs=290.0

Q ss_pred             HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             99999999987086600258999999999988999999999999998639999986310000002345667655577401
Q gi|254780753|r   20 VQRLSFLNTKTEDPHLWQNVIEAKMLMRERQHLDNAISFIKEIQDRLCDNLILLELALEEDDCSILQETSDNLQRIKLEV   99 (355)
Q Consensus        20 ~~rl~eLE~~lsdp~fW~D~~kAqkl~KE~s~L~~iV~~~~~l~~~l~Dl~eL~ELa~ee~D~el~eE~~~el~~l~~~l   99 (355)
                      ++|+++|+.+|++|+||+|  ++++++++++.|+++++.++.    ++|+.++++++.++.|.++      ++..+...+
T Consensus         2 ~~r~~eLe~~l~dPd~~~d--~~~~lske~~~L~~i~~l~~~----~~d~~el~el~~ee~d~e~------el~~l~~~l   69 (333)
T d1rq0a_           2 KEKKKEIEKLLARPDLTPE--QMKNYGMEYAKIEEIENITNR----IKETQEFIELLREEGENEL------EIEKYEKEL   69 (333)
T ss_dssp             TTTTTHHHHHHHSSCCCHH--HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHTTTTTTTTCCS------CHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCCCHH--HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHCCCCCHH------HHHHHHHHH
T ss_conf             5899999999838998999--999999999999999999999----9989999999873887589------999999889


Q ss_pred             HHHHHH-HHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCC
Q ss_conf             589988-7630345766248998217787027789999999899998775311344420545458501346885055610
Q gi|254780753|r  100 EYKQFE-SLLSGEADSNDAYLEVHAGAGGTESQDWANMLLRMYTRWAEKRKFKTEALEIHDGEEAGIKSATLLIKGPNAY  178 (355)
Q Consensus       100 e~LE~~-~Lls~e~D~~nailEI~AGaGG~EA~dwA~~L~rMY~r~ae~~gwk~evi~~~~~e~~GiK~~~~~I~G~~ay  178 (355)
                      ++++.+ .+|.+|+|++||||||||||||+||||||+||||||+|||+++||++++++.++|+.||||+|+|.|+|++||
T Consensus        70 ~~l~~el~~l~~p~D~~nailEIrAGaGG~EA~~fA~~L~RMY~r~Ae~kgwk~eil~~~~~e~gGiK~v~~~I~G~~ay  149 (333)
T d1rq0a_          70 DQLYQELLFLLSPEASDKAIVEIRPGTGGEEAALFARDLFRMYTRYAERKGWNLEVAEIHETDLGGIREVVFFVKGKNAY  149 (333)
T ss_dssp             HHHHHHHHHHHSCSSCSEEEEEEEECSSTHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEEECTTSCEEEEEEEEESTTHH
T ss_pred             HHHHHHHHCCCCHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHEEECCCCCH
T ss_conf             99999863324200134627999447871789999999999999998660345321223332333311222000022213


Q ss_pred             HHHEEECCEEEEEEECCCCCCCEEEEEEEEEEECCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCEEEEEEECCCH
Q ss_conf             00001012068987304666650356688788503442221112345503699853888655442731003588746974
Q gi|254780753|r  179 GWLKGEQGVHRLVRISPYDSNSRRHTSFSSIWVYPVVDDSIEIEISESDCRIDTYRASGAGGQHVNTTDSAVRITHIPTG  258 (355)
Q Consensus       179 g~Lk~E~GvHRv~Ri~~~~s~gR~hTS~a~V~V~P~~~~~~~i~i~~~dl~i~~~rssg~ggq~vn~t~savri~H~ptg  258 (355)
                      |+||+|+|||||||||||+++||||||||+|+|+|++++ ++++|+|+||+|+|||||||||||||||+|||||||+|||
T Consensus       150 g~Lk~E~GvHRv~Rvp~~~~~~r~hTs~~~V~v~p~~~~-~~v~i~~~dl~i~~~RssG~GGQ~VNkt~sAVRitH~PTG  228 (333)
T d1rq0a_         150 GILKYESGVHRVQRVPVTESGGRIHTSTATVAVLPEIEE-KDIEIRPEDLKIETFRASGHGGQYVNKTESAVRITHLPTG  228 (333)
T ss_dssp             HHHGGGCEEEEEEECCTTSCSCCCEEEEEEEEEEECCCG-GGSCCCGGGEEEEEECCCC----CCSSSSEEEEEEETTTC
T ss_pred             HHHCCCCCCEEEEEECCCCCCCCEEEEEEEEEEECCCCC-CCCCCCCCCEEEEEECCCCCCCCHHHHHHHEEEEEECCCC
T ss_conf             442100110268872245777755777899997412344-3221003433688513775322212113100379985886


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCCCCEEEEECCCCCCCCCCCCCCEECCHHH
Q ss_conf             776655555224679999999999999999999999999987413-3233222101301585683311114725079778
Q gi|254780753|r  259 VVVQCQQERSQHKNKAQAWNMLRAKLYELELQKREEIANIGESSK-TEIGWGRQIRSYVLQPYQMVKDLRTNIEKTSPSD  337 (355)
Q Consensus       259 i~v~~q~~rsq~~Nk~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~-~~~~~g~~iRtY~~~p~~~v~DhR~~~~~~~~~~  337 (355)
                      |+|.||++||||+||++||++|++|||+++.+++.++....+..+ +..+||+||||||| ||+||||||||++++|+++
T Consensus       229 i~v~~q~eRSQ~~Nk~~A~~~L~~kl~~~~~~~~~~~~~~~r~~~~~~~~r~~~iRtY~~-p~~rV~DhR~~~~~~~l~~  307 (333)
T d1rq0a_         229 IVVSCQNERSQYQNKQTALRILRARLYQLQKEQKEREISQKRKSQIGTGERSEKIRTYNF-PQNRVTDHRINYTSYRLQE  307 (333)
T ss_dssp             CEEEEEESSCHHHHHHHHHHHHHHHHHHHHHHHHHTTTCC----------CCCEEEEEET-TTTEEEETTTTEEESCHHH
T ss_pred             CEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEC-CCCCCHHHCCCCEECCHHH
T ss_conf             188711155617899999999999999999998789999988603214446788642438-9986166414985468457


Q ss_pred             HHCCCHHHHHHHHHHCC
Q ss_conf             71897799999997225
Q gi|254780753|r  338 VLDGDLDDFMKATLAIK  354 (355)
Q Consensus       338 vl~G~ld~~i~a~l~~~  354 (355)
                      ||+|+||+||++++.|.
T Consensus       308 vl~G~ld~~i~~~~~~~  324 (333)
T d1rq0a_         308 ILDGDLDEIISKLIEHD  324 (333)
T ss_dssp             HHTTCCHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHH
T ss_conf             75887399999999999


SCOP domain information

class: Multi-domain proteins (alpha and beta)
fold: Release factor
superfamily: Release factor
family: Release factor
domain: Peptide chain release factor 1, RF1
species: Thermotoga maritima [TaxId: 2336]