RPSBLAST alignment for GI: 254780753 and conserved domain: TIGR00019

>gnl|CDD|129130 TIGR00019, prfA, peptide chain release factor 1. This model describes peptide chain release factor 1 (PrfA, RF-1), and excludes the related peptide chain release factor 2 (PrfB, RF-2). RF-1 helps recognize and terminate translation at UAA and UAG stop codons. The mitochondrial release factors are prfA-like, although not included above the trusted cutoff for this model. RF-1 does not have a translational frameshift. Length = 360

 Score =  258 bits (660), Expect = 2e-69
 Identities = 129/343 (37%), Positives = 202/343 (58%), Gaps = 12/343 (3%)

Query: 17  DNAVQRLSFLNTKTEDPHLWQNVIEAKMLMRERQHLDNAISFIKEIQDRLCDNLILLELA 76
           ++ ++R   L     DP +  +  + + L +E   L+  I        +  +++   +  
Sbjct: 10  ESLLERYEELEALLSDPEVISDQDKLRKLSKEYSQLEE-IVDCYREYQQAQEDIKEAKEI 68

Query: 77  LEEDDCSILQETSDNLQRIKLEVE--YKQFESLL--SGEADSNDAYLEVHAGAGGTESQD 132
           LEE D  + +   + L+ ++ ++E   +Q + LL      D  +  LE+ AG GG E+  
Sbjct: 69  LEESDPEMREMAKEELEELEEKIEELEEQLKVLLLPKDPNDEKNVILEIRAGTGGDEAAI 128

Query: 133 WANMLLRMYTRWAEKRKFKTEALEIHDGEEAGIKSATLLIKGPNAYGWLKGEQGVHRLVR 192
           +A  L RMY+R+AE + +K E L  ++ E  G K     IKG   Y  LK E GVHR+ R
Sbjct: 129 FAGDLFRMYSRYAESKGWKVEILSANETELGGYKEVIAEIKGDGVYSRLKFESGVHRVQR 188

Query: 193 ISPYDSNSRRHTSFSSIWVYPVVDDSIEIEISESDCRIDTYRASGAGGQHVNTTDSAVRI 252
           +   +S  R HTS +++ V P +++ +E++I+ +D RIDT+R+SGAGGQHVNTTDSAVRI
Sbjct: 189 VPVTESQGRIHTSAATVAVMPELEE-VEVDINPADLRIDTFRSSGAGGQHVNTTDSAVRI 247

Query: 253 THIPTGVVVQCQQERSQHKNKAQAWNMLRAKLYELELQKREEIANIGESSKTEIGWG--- 309
           TH+PTG+VV+CQ ERSQHKNK +A  +LRA+LYE E +K++  A    + K+++G G   
Sbjct: 248 THLPTGIVVECQDERSQHKNKDKAMKVLRARLYEAEQEKQQ--AAQASTRKSQVGSGDRS 305

Query: 310 RQIRSYVLQPYQMVKDLRTNIEKTSPSDVLDGDLDDFMKATLA 352
            +IR+Y   P   V D R N+      +VL+GDLD+ ++A +A
Sbjct: 306 ERIRTYNF-PQNRVTDHRINLTLYKLDEVLEGDLDELIEALIA 347