RPSBLAST alignment of GI: 254780753 and protein with PDBid: 2b3t

>2b3t_B RF-1, peptide chain release factor 1; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: e.38.1.1 Length = 360

 Score =  239 bits (610), Expect = 9e-64
 Identities = 112/338 (33%), Positives = 175/338 (51%), Gaps = 3/338 (0%)

Query: 17  DNAVQRLSFLNTKTEDPHLWQNVIEAKMLMRERQHLDNAISFIKEIQDRLCDNLILLELA 76
           +   +R   +     D     +    + L RE   L +      + Q    D      + 
Sbjct: 10  EALHERHEEVQALLGDAQTIADQERFRALSREYAQLSDVSRCFTDWQQVQEDIETAQMML 69

Query: 77  LEEDDCSILQETSDNLQRIKLEVE-YKQFESLLSGEADSNDAYLEVHAGAGGTESQDWAN 135
            + +   + Q+     +    ++E   Q   L     D  +A+LEV AG GG E+  +A 
Sbjct: 70  DDPEMREMAQDELREAKEKSEQLEQQLQVLLLPKDPDDERNAFLEVRAGTGGDEAALFAG 129

Query: 136 MLLRMYTRWAEKRKFKTEALEIHDGEEAGIKSATLLIKGPNAYGWLKGEQGVHRLVRISP 195
            L RMY+R+AE R+++ E +   +GE  G K     I G   YG LK E G HR+ R+  
Sbjct: 130 DLFRMYSRYAEARRWRVEIMSASEGEHGGYKEIIAKISGDGVYGRLKFESGGHRVQRVPA 189

Query: 196 YDSNSRRHTSFSSIWVYPVVDDSIEIEISESDCRIDTYRASGAGGQHVNTTDSAVRITHI 255
            +S  R HTS  ++ V P + D+   +++ +D RIDT+R+SGAGGQHVNTTDSA+RITH+
Sbjct: 190 TESQGRIHTSACTVAVMPELPDAELPDVNPADLRIDTFRSSGAGGQHVNTTDSAIRITHL 249

Query: 256 PTGVVVQCQQERSQHKNKAQAWNMLRAKLYELELQK-REEIANIGESSKTEIGWGRQIRS 314
           PTG+VV+CQ ERSQHKNKA+A ++L A+++  E+ K ++  A+   +         + R+
Sbjct: 250 PTGIVVECQDERSQHKNKAKALSVLGARIHAAEMAKRQQAEASTRRNLLGSGDRSDRNRT 309

Query: 315 YVLQPYQMVKDLRTNIEKTSPSDVLDGDLDDFMKATLA 352
           Y   P   V D R N+      +V++G LD  ++  + 
Sbjct: 310 YNF-PQGRVTDHRINLTLYRLDEVMEGKLDMLIEPIIQ 346