RPSBLAST alignment of GI: 254780753 and protein with PDBid: 3d5a

>3d5a_X RF1, peptide chain release factor 1; ribosome, coiled coil, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding; 3.21A {Thermus thermophilus HB27} PDB: 2b64_Y 3d5c_X Length = 354

 Score =  236 bits (603), Expect = 6e-63
 Identities = 109/340 (32%), Positives = 167/340 (49%), Gaps = 8/340 (2%)

Query: 17  DNAVQRLSFLNTKTEDPHLWQNVIEAKMLMRERQHLDNAISFIKEIQDRLCDNLILLELA 76
           D   +    L     DP + ++    + L R    +   I  I+E +  L D      L 
Sbjct: 6   DRLEEEYRELEALLSDPEVLKDKGRYQSLSRRYAEMGEVIGLIREYRKVLEDLEQAESLL 65

Query: 77  LEEDDCSILQETSDNLQRIKLEVEYKQFESL-LSGEADSNDAYLEVHAGAGGTESQDWAN 135
            + +   + +   + L   K  +E +    L      D  DA +E+ AG GG E+  +A 
Sbjct: 66  DDPELKEMAKAEREALLARKEALEKELERHLLPKDPMDERDAIVEIRAGTGGEEAALFAR 125

Query: 136 MLLRMYTRWAEKRKFKTEALEIHDGEEAGIKSATLLIKGPNAYGWLKGEQGVHRLVRISP 195
            L  MY R+AE+  F+TE L+ H  +  G       ++GP AYG  K E GVHR+ R+  
Sbjct: 126 DLFNMYLRFAEEMGFETEVLDSHPTDLGGFSKVVFEVRGPGAYGTFKYESGVHRVQRVPV 185

Query: 196 YDSNSRRHTSFSSIWVYPVVDDSIEIEISESDCRIDTYRASGAGGQHVNTTDSAVRITHI 255
            ++  R HTS +++ V P  ++  +  ++  + RID  RASG GGQ VNTTDSAVR+ H+
Sbjct: 186 TETQGRIHTSTATVAVLPKAEE-EDFALNMDEIRIDVMRASGPGGQGVNTTDSAVRVVHL 244

Query: 256 PTGVVVQCQQERSQHKNKAQAWNMLRAKLYELELQKREEIANIGESSKTEIGWG---RQI 312
           PTG++V CQ  RSQ KN+ +A  +LR+    LE+++ EE   + ++   +IG G    +I
Sbjct: 245 PTGIMVTCQDSRSQIKNREKALMILRS--RLLEMKRAEEAERLRKTRLAQIGTGERSEKI 302

Query: 313 RSYVLQPYQMVKDLRTNIEKTSPSDVLDGDLDDFMKATLA 352
           R+Y   P   V D R          VL G L   ++A   
Sbjct: 303 RTYNF-PQSRVTDHRIGFTTHDLEGVLSGHLTPILEALKR 341