HHsearch alignment for GI: 254780754 and conserved domain: COG0061

>COG0061 nadF NAD kinase [Coenzyme metabolism].
Probab=100.00  E-value=0  Score=407.87  Aligned_cols=220  Identities=32%  Similarity=0.528  Sum_probs=190.2

Q ss_pred             CHHHCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEEEEE---CCCCC
Q ss_conf             845577999987954899999997412872994153433201044587899986642012432034434542---12444
Q gi|254780754|r   33 TSEEADVIVVLGGDGFMLQSFHQSKEYDKPIYGMNCGSVGFLMNEYCIENLVERLSVAVECTFHPLKMTVFD---YDNSI  109 (264)
Q Consensus        33 ~~~~~Dlii~iGGDGT~L~a~~~~~~~~~PilGIn~G~lGFL~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~---~~~~~  109 (264)
T Consensus        52 ~~~~~d~ivvlGGDGtlL~~~~~~~~~~~pilgin~G~lGFLt-~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~v~~~~-  129 (281)
T COG0061          52 DEEKADLIVVLGGDGTLLRAARLLARLDIPVLGINLGHLGFLT-DFEPDELEKALDALLEGEYRIEERLLLEVSVNRGD-  129 (281)
T ss_pred             CCCCCEEEEEECCCHHHHHHHHHHCCCCCCEEEEECCCCCCCC-CCCHHHHHHHHHHHHCCCCEEEEEEEEEEEEECCC-
T ss_conf             5677649999899689999999745569978999889830036-76878999999998647624776568999996387-


Q ss_pred             CCEEEEEEEEEEEEECCCCCCEEEEEEEEEEECCEEEEEEEECCEEEEECCCCHHHHHHHCCCEEEEECCCEEEEECCCC
Q ss_conf             42015775347997268764236788898766787653121035079822665044675229817740886058630354
Q gi|254780754|r  110 CAENILAINEVSIIRKPGQNQLVQAAKLEVKVDDQVRLPELVCDGLVVSTPIGSTAYNFSALGPILPLESRHLLLTPVSP  189 (264)
Q Consensus       110 ~~~~~~AlNEi~i~r~~~~~~~~~~~~~~v~id~~~~~~~~~~DGvivSTptGSTAY~lSaGGpIv~p~~~~~~itpI~p  189 (264)
T Consensus       130 -~~~~~aLNEv~I~~~~~~~----~~~~~v~id~~~-~~~~r~DGliVsTPTGSTAY~lSAGGPIv~P~l~ai~ltpi~p  203 (281)
T COG0061         130 -IRRALALNEVVIHRGSPAK----MIEFEVYIDDEF-FESFRGDGLIVSTPTGSTAYNLSAGGPILHPGLDAIQLTPICP  203 (281)
T ss_pred             -CEEEEEEEEEEEECCCCCC----EEEEEEEECCEE-EEEEECCEEEEECCCCHHHHHHHCCCCCCCCCCCEEEEEECCC
T ss_conf             -4068888879996488764----489999999999-9999868999918986777863079960699988699984577


Q ss_pred             CCHHHHHHCCCCCCCEEEEEECCCCCCEEEEEECCEE---CCCCCEEEEEECCCCCEEEEECCCC-CHHHHHHHHHCC
Q ss_conf             3301111002788414899974878875899988988---1487789999879951899964888-899988887517
Q gi|254780754|r  190 FKPRRWHGAILPNDVMIEIQVLEHKQRPVIATADRLA---IEPVSRINVTQSSDITMRILSDSHR-SWSDRILTAQFS  263 (264)
Q Consensus       190 ~~l~~~rplVl~~~~~I~i~i~~~~~~~~~~~~D~~~---~~~~~~i~I~~s~~~~~~li~~~~~-~f~~ril~~kF~  263 (264)
T Consensus       204 ~~l~-~Rpiv~p~~~~v~i~~~~~~~~~~~~~~Dg~~~~~~~~~~~i~i~~s~-~~~~~~~~~~~~~~~~~l-~~~~~  278 (281)
T COG0061         204 HSLS-FRPLVLPSSSTVRIEVLLTPKRDAVVVVDGQELLLINPGDRIEIRRSP-YKARFIRLRSYDDFFERL-RSKLI  278 (281)
T ss_pred             CCCC-CCCEEECCCCEEEEEECCCCCCCEEEEECCCEEEECCCCCEEEEEECC-CEEEEECCCCCHHHHHHH-HHHHC
T ss_conf             7877-887798997469999845776560999759765715998489999857-547880467722599999-99764