Query gi|254780754|ref|YP_003065167.1| inorganic polyphosphate/ATP-NAD kinase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 264
No_of_seqs 129 out of 1944
Neff 6.3
Searched_HMMs 39220
Date Sun May 29 21:59:38 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780754.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK04761 ppnK inorganic polyph 100.0 0 0 498.8 28.0 245 12-263 1-245 (246)
2 PRK02649 ppnK inorganic polyph 100.0 0 0 458.3 26.7 248 5-263 1-290 (305)
3 PRK03378 ppnK inorganic polyph 100.0 0 0 457.5 27.2 253 1-263 1-286 (292)
4 PRK04759 consensus 100.0 0 0 456.5 26.9 254 1-263 1-288 (294)
5 PRK02155 ppnK inorganic polyph 100.0 0 0 455.1 26.7 252 1-263 1-285 (291)
6 PRK01231 ppnK inorganic polyph 100.0 0 0 453.4 27.0 252 3-263 2-286 (296)
7 PRK04539 ppnK inorganic polyph 100.0 0 0 451.9 27.0 252 1-263 1-290 (296)
8 PRK01911 ppnK inorganic polyph 100.0 0 0 448.7 27.2 248 6-263 1-283 (290)
9 PRK00561 ppnK inorganic polyph 100.0 0 0 445.2 27.9 243 6-262 1-255 (259)
10 PRK03372 ppnK inorganic polyph 100.0 0 0 446.0 26.9 250 4-263 3-292 (303)
11 PRK04885 ppnK inorganic polyph 100.0 0 0 444.3 27.6 246 6-263 1-261 (265)
12 PRK02645 ppnK inorganic polyph 100.0 0 0 444.4 26.8 255 3-263 1-291 (304)
13 PRK03501 ppnK inorganic polyph 100.0 0 0 435.4 28.5 248 5-262 2-263 (264)
14 PRK03708 ppnK inorganic polyph 100.0 0 0 435.0 26.2 245 6-262 1-274 (278)
15 PRK01185 ppnK inorganic polyph 100.0 0 0 428.0 27.1 242 6-262 1-266 (272)
16 PRK02231 ppnK inorganic polyph 100.0 0 0 430.9 23.1 222 33-263 39-267 (272)
17 COG0061 nadF NAD kinase [Coenz 100.0 0 0 407.9 24.3 220 33-263 52-278 (281)
18 pfam01513 NAD_kinase ATP-NAD k 100.0 0 0 394.1 26.0 232 7-248 1-243 (243)
19 KOG2178 consensus 100.0 0 0 369.8 18.1 220 35-263 167-399 (409)
20 KOG4180 consensus 99.8 3E-20 7.6E-25 148.0 6.6 133 33-171 102-278 (395)
21 PRK11914 diacylglycerol kinase 98.0 5.3E-05 1.3E-09 51.7 9.0 232 3-249 4-302 (304)
22 PRK13337 putative lipid kinase 98.0 0.00026 6.7E-09 47.3 12.4 225 5-251 2-297 (305)
23 PRK13055 putative lipid kinase 97.9 0.00048 1.2E-08 45.6 12.7 227 5-250 2-302 (334)
24 TIGR02482 PFKA_ATP 6-phosphofr 97.5 0.00017 4.4E-09 48.4 5.4 79 19-107 81-169 (302)
25 TIGR02483 PFK_mixed phosphofru 97.5 0.00036 9.1E-09 46.5 6.8 77 18-105 95-182 (339)
26 PRK13059 putative lipid kinase 97.5 0.00061 1.6E-08 45.0 7.4 91 5-95 1-118 (294)
27 PRK12361 hypothetical protein; 97.4 0.012 3.1E-07 36.8 13.7 225 7-250 243-542 (546)
28 PRK13054 lipid kinase; Reviewe 97.3 0.001 2.7E-08 43.5 7.4 229 3-254 1-297 (299)
29 PRK00861 putative lipid kinase 97.3 0.0014 3.6E-08 42.7 7.7 231 5-247 2-295 (296)
30 COG3199 Predicted inorganic po 97.2 0.0023 5.8E-08 41.4 7.4 59 36-95 100-159 (355)
31 TIGR00147 TIGR00147 conserved 97.0 0.0011 2.9E-08 43.3 4.4 132 36-180 62-234 (316)
32 COG1597 LCB5 Sphingosine kinas 96.7 0.054 1.4E-06 32.7 12.7 194 36-251 58-298 (301)
33 PRK03202 6-phosphofructokinase 96.4 0.0098 2.5E-07 37.4 5.9 54 35-91 93-156 (323)
34 PRK13057 putative lipid kinase 96.1 0.028 7.2E-07 34.5 7.0 194 35-250 49-286 (287)
35 cd00763 Bacterial_PFK Phosphof 95.9 0.024 6E-07 35.0 5.9 53 35-91 91-153 (317)
36 pfam00365 PFK Phosphofructokin 95.9 0.03 7.5E-07 34.4 6.1 41 35-75 91-141 (279)
37 PRK06555 pyrophosphate--fructo 95.8 0.033 8.4E-07 34.0 6.1 54 35-91 111-179 (403)
38 COG0205 PfkA 6-phosphofructoki 95.4 0.044 1.1E-06 33.3 5.7 54 35-91 93-156 (347)
39 PTZ00286 6-phospho-1-fructokin 95.0 0.057 1.5E-06 32.6 5.3 56 36-94 187-257 (486)
40 cd00363 PFK Phosphofructokinas 95.0 0.09 2.3E-06 31.3 6.1 54 35-91 91-159 (338)
41 PRK06830 diphosphate--fructose 94.9 0.064 1.6E-06 32.2 5.2 56 36-94 171-241 (442)
42 cd00764 Eukaryotic_PFK Phospho 94.7 0.19 5E-06 29.2 7.2 71 35-108 477-564 (762)
43 cd00764 Eukaryotic_PFK Phospho 94.4 0.27 6.8E-06 28.3 7.4 68 35-105 96-195 (762)
44 smart00046 DAGKc Diacylglycero 93.3 0.22 5.6E-06 28.8 5.4 26 35-60 48-73 (124)
45 pfam00781 DAGK_cat Diacylglyce 92.6 0.21 5.4E-06 28.9 4.4 36 36-71 54-93 (127)
46 PRK13143 hisH imidazole glycer 92.4 0.42 1.1E-05 27.1 5.7 65 5-70 1-82 (201)
47 PRK13146 hisH imidazole glycer 90.2 0.92 2.4E-05 24.9 5.6 65 5-70 1-86 (208)
48 PRK08250 glutamine amidotransf 90.2 1 2.6E-05 24.6 5.9 38 33-70 42-94 (235)
49 cd01746 GATase1_CTP_Synthase T 89.9 0.38 9.6E-06 27.4 3.5 36 34-69 53-93 (235)
50 KOG4435 consensus 89.6 1.7 4.4E-05 23.2 6.7 84 37-122 117-213 (535)
51 TIGR00337 PyrG CTP synthase; I 89.5 0.41 1.1E-05 27.1 3.4 141 7-159 343-526 (571)
52 PRK06490 glutamine amidotransf 88.7 1.5 3.7E-05 23.7 5.7 68 3-70 9-100 (243)
53 PRK07053 glutamine amidotransf 87.9 1.3 3.3E-05 24.0 5.1 66 5-70 2-93 (235)
54 PRK13180 consensus 87.9 1.9 4.9E-05 22.9 5.9 65 5-70 1-84 (209)
55 PRK05380 pyrG CTP synthetase; 87.5 0.63 1.6E-05 25.9 3.3 36 34-69 341-381 (534)
56 PRK13175 consensus 87.4 1.4 3.5E-05 23.8 4.9 65 5-70 1-84 (206)
57 pfam00465 Fe-ADH Iron-containi 85.9 1.5 3.8E-05 23.6 4.5 21 36-57 79-99 (312)
58 TIGR02478 6PF1K_euk 6-phosphof 85.8 1.1 2.7E-05 24.5 3.7 28 19-53 84-111 (777)
59 PRK06186 hypothetical protein; 85.6 0.91 2.3E-05 25.0 3.2 38 32-69 49-91 (229)
60 TIGR00725 TIGR00725 conserved 84.7 1.5 3.9E-05 23.5 4.1 41 35-75 97-139 (176)
61 PRK07765 para-aminobenzoate sy 84.1 2.9 7.3E-05 21.8 5.3 65 6-70 1-86 (221)
62 pfam02350 Epimerase_2 UDP-N-ac 84.1 2.6 6.5E-05 22.1 5.0 57 17-73 48-104 (346)
63 cd03786 GT1_UDP-GlcNAc_2-Epime 83.1 2.9 7.4E-05 21.8 4.9 39 35-73 87-125 (363)
64 pfam01761 DHQ_synthase 3-dehyd 82.9 2.7 6.9E-05 22.0 4.7 34 34-68 78-114 (310)
65 COG1810 Uncharacterized protei 82.2 4.1 0.0001 20.8 6.8 109 36-169 55-166 (224)
66 PRK10710 DNA-binding transcrip 82.2 3.1 8E-05 21.6 4.8 90 1-92 6-126 (240)
67 COG4069 Uncharacterized protei 81.3 1.9 4.8E-05 23.0 3.4 14 14-27 14-27 (367)
68 TIGR03568 NeuC_NnaA UDP-N-acet 80.8 4.3 0.00011 20.7 5.1 39 34-72 91-129 (365)
69 COG0322 UvrC Nuclease subunit 80.7 4.6 0.00012 20.5 5.7 29 2-30 57-86 (581)
70 CHL00188 hisH imidazole glycer 79.9 4.9 0.00012 20.3 6.5 65 5-70 1-84 (210)
71 PRK13173 consensus 79.9 4.9 0.00013 20.3 6.3 65 5-70 1-83 (211)
72 PRK13525 glutamine amidotransf 79.1 5.2 0.00013 20.2 5.6 64 5-70 1-82 (191)
73 TIGR02477 PFKA_PPi diphosphate 78.9 1.8 4.7E-05 23.0 2.7 45 31-75 163-224 (566)
74 KOG2387 consensus 78.6 1.8 4.5E-05 23.1 2.6 34 36-69 363-401 (585)
75 COG1819 Glycosyl transferases, 77.1 4.5 0.00011 20.6 4.3 29 138-167 222-250 (406)
76 cd01741 GATase1_1 Subgroup of 76.5 6.1 0.00016 19.7 5.0 38 33-70 43-91 (188)
77 PRK10955 DNA-binding transcrip 76.5 5.6 0.00014 20.0 4.7 87 5-93 1-117 (232)
78 PRK01293 phosphoribosyl-dephos 76.1 1.6 4.2E-05 23.4 1.8 84 157-250 112-203 (209)
79 pfam00117 GATase Glutamine ami 75.8 3.1 7.9E-05 21.6 3.2 36 35-70 40-81 (187)
80 pfam08459 UvrC_HhH_N UvrC Heli 75.7 5.7 0.00015 19.9 4.5 65 6-70 45-114 (154)
81 KOG3349 consensus 75.4 2.3 6E-05 22.4 2.5 50 32-89 76-125 (170)
82 PRK09065 glutamine amidotransf 74.9 6.8 0.00017 19.4 6.8 68 3-70 1-100 (238)
83 PRK13148 consensus 74.3 7 0.00018 19.4 6.3 65 5-70 1-85 (225)
84 pfam06506 PrpR_N Propionate ca 72.1 7.9 0.0002 19.0 6.8 65 7-93 10-74 (169)
85 PRK05637 anthranilate synthase 71.9 8 0.0002 19.0 4.6 65 5-70 1-83 (208)
86 PRK13174 consensus 71.5 8.2 0.00021 18.9 6.4 65 5-70 1-84 (212)
87 cd03135 GATase1_DJ-1 Type 1 gl 71.0 7 0.00018 19.4 4.0 41 31-71 55-104 (163)
88 PRK13805 bifunctional acetalde 70.8 8.5 0.00022 18.8 4.5 62 9-74 141-228 (862)
89 PRK10701 DNA-binding transcrip 70.3 8.7 0.00022 18.8 6.9 85 5-91 1-116 (240)
90 PRK13144 consensus 69.3 9.1 0.00023 18.6 6.2 64 6-70 1-76 (190)
91 PRK05467 putative hydroxylase; 68.5 9.5 0.00024 18.5 4.9 57 130-189 110-166 (226)
92 pfam01965 DJ-1_PfpI DJ-1/PfpI 68.2 8.2 0.00021 18.9 3.9 41 31-71 29-78 (141)
93 PRK11366 puuD gamma-glutamyl-g 67.7 8.6 0.00022 18.8 3.9 35 35-69 60-116 (254)
94 PRK00758 GMP synthase subunit 67.6 9.9 0.00025 18.4 5.4 61 7-70 1-77 (184)
95 cd01742 GATase1_GMP_Synthase T 66.8 6.3 0.00016 19.7 3.1 63 8-70 1-80 (181)
96 COG0504 PyrG CTP synthase (UTP 66.6 7.2 0.00018 19.3 3.3 33 37-69 344-381 (533)
97 TIGR02490 flgF flagellar basal 65.9 10 0.00025 18.4 4.0 75 150-237 80-166 (254)
98 KOG1115 consensus 65.5 5.6 0.00014 20.0 2.6 34 34-67 215-248 (516)
99 TIGR02638 lactal_redase lactal 65.3 11 0.00028 18.1 4.4 86 136-224 88-177 (380)
100 PRK10610 chemotaxis regulatory 65.2 11 0.00028 18.1 8.6 91 1-92 1-125 (129)
101 cd03134 GATase1_PfpI_like A ty 63.7 9.8 0.00025 18.4 3.6 42 31-72 57-106 (165)
102 KOG1169 consensus 63.7 8.1 0.00021 19.0 3.1 55 16-70 285-366 (634)
103 TIGR01093 aroD 3-dehydroquinat 62.9 5.9 0.00015 19.9 2.3 28 47-74 174-203 (239)
104 PRK07085 diphosphate--fructose 62.9 7.7 0.0002 19.1 2.9 33 36-68 166-203 (557)
105 PRK10529 DNA-binding transcrip 61.9 13 0.00032 17.7 7.9 86 5-92 1-117 (225)
106 PRK09423 gldA glycerol dehydro 60.4 13 0.00034 17.6 6.8 33 35-68 83-116 (366)
107 PRK06895 para-aminobenzoate sy 60.4 13 0.00034 17.6 5.6 64 6-70 3-83 (191)
108 PRK13171 consensus 59.6 14 0.00035 17.5 6.2 65 5-70 1-81 (200)
109 cd03140 GATase1_PfpI_3 Type 1 59.2 13 0.00032 17.7 3.5 38 33-70 57-101 (170)
110 pfam01487 DHquinase_I Type I 3 59.2 9.1 0.00023 18.6 2.8 39 49-91 44-84 (222)
111 PRK13172 consensus 58.9 14 0.00036 17.4 5.5 64 5-69 1-83 (213)
112 cd01744 GATase1_CPSase Small c 57.7 12 0.00031 17.9 3.2 36 36-71 39-80 (178)
113 TIGR02518 EutH_ACDH acetaldehy 57.3 12 0.00032 17.8 3.2 79 9-93 134-238 (528)
114 cd02008 TPP_IOR_alpha Thiamine 57.2 13 0.00034 17.6 3.3 11 40-50 72-82 (178)
115 COG0381 WecB UDP-N-acetylgluco 56.7 15 0.00039 17.2 9.1 39 35-73 91-129 (383)
116 TIGR01225 hutH histidine ammon 56.7 7.4 0.00019 19.2 1.9 27 56-83 43-70 (529)
117 cd01748 GATase1_IGP_Synthase T 56.6 16 0.0004 17.2 5.2 63 8-70 1-81 (198)
118 PRK09310 aroDE bifunctional 3- 56.0 13 0.00032 17.7 3.1 51 24-74 117-170 (477)
119 cd06167 LabA_like LabA_like pr 55.8 16 0.00041 17.1 4.2 33 36-68 99-131 (149)
120 COG4787 FlgF Flagellar basal b 53.8 13 0.00033 17.7 2.8 55 151-209 83-138 (251)
121 PRK10365 transcriptional regul 52.9 18 0.00045 16.8 6.7 90 1-92 1-122 (441)
122 TIGR01237 D1pyr5carbox2 delta- 52.7 5.7 0.00015 19.9 0.9 24 161-184 188-212 (518)
123 cd01743 GATase1_Anthranilate_S 52.6 18 0.00046 16.8 5.4 62 9-70 2-81 (184)
124 COG1929 Glycerate kinase [Carb 51.7 13 0.00032 17.8 2.5 47 18-65 16-67 (378)
125 PRK13170 hisH imidazole glycer 50.9 19 0.00049 16.6 6.0 65 6-71 1-81 (196)
126 PRK13147 consensus 50.9 19 0.00049 16.6 5.8 64 6-70 1-90 (211)
127 PRK13151 consensus 50.7 19 0.00049 16.6 6.5 64 6-70 1-80 (195)
128 TIGR00216 ispH_lytB 4-hydroxy- 50.0 9 0.00023 18.7 1.5 12 37-48 264-275 (354)
129 COG0512 PabA Anthranilate/para 50.0 20 0.0005 16.5 6.3 65 5-70 1-84 (191)
130 cd03784 GT1_Gtf_like This fami 49.3 20 0.0005 16.5 3.2 33 35-70 103-135 (401)
131 COG0371 GldA Glycerol dehydrog 48.9 21 0.00052 16.4 5.1 33 35-68 83-116 (360)
132 COG0118 HisH Glutamine amidotr 47.6 22 0.00055 16.3 6.2 65 5-70 1-84 (204)
133 cd06326 PBP1_STKc_like Type I 47.5 22 0.00055 16.3 7.6 56 6-69 40-101 (336)
134 PRK09860 putative alcohol dehy 46.9 22 0.00056 16.2 3.7 50 5-55 31-106 (383)
135 TIGR02081 metW methionine bios 46.8 22 0.00057 16.2 3.6 45 45-99 23-73 (205)
136 cd00765 Pyrophosphate_PFK Phos 46.1 23 0.00058 16.1 3.2 33 36-68 166-203 (550)
137 COG0693 ThiJ Putative intracel 46.0 23 0.00058 16.1 4.5 41 33-73 63-112 (188)
138 TIGR02418 acolac_catab acetola 45.8 17 0.00044 16.9 2.4 34 33-68 266-301 (553)
139 PRK09393 ftrA transcriptional 45.0 24 0.0006 16.0 3.5 36 35-70 72-114 (320)
140 PRK13575 3-dehydroquinate dehy 44.7 22 0.00056 16.2 2.8 78 11-91 10-93 (238)
141 TIGR02038 protease_degS peripl 44.7 24 0.00061 16.0 3.1 57 176-235 281-338 (358)
142 cd03137 GATase1_AraC_1 AraC tr 42.9 25 0.00065 15.8 3.5 37 34-70 62-106 (187)
143 KOG1116 consensus 42.5 26 0.00066 15.8 6.0 75 33-108 233-319 (579)
144 KOG3584 consensus 42.2 8.1 0.00021 18.9 0.3 28 147-174 149-176 (348)
145 PRK13527 glutamine amidotransf 42.0 21 0.00054 16.3 2.4 39 32-70 39-87 (196)
146 PRK13176 consensus 41.9 26 0.00067 15.7 5.6 64 6-70 1-91 (216)
147 cd03794 GT1_wbuB_like This fam 41.8 26 0.00067 15.7 3.9 31 34-64 97-128 (394)
148 COG1454 EutG Alcohol dehydroge 41.5 27 0.00068 15.7 3.6 51 5-56 29-105 (377)
149 cd03129 GAT1_Peptidase_E_like 41.2 27 0.00069 15.7 5.6 20 148-167 109-128 (210)
150 COG2071 Predicted glutamine am 41.1 27 0.00069 15.7 2.9 25 45-69 92-116 (243)
151 PRK10816 DNA-binding transcrip 40.5 28 0.00071 15.6 5.7 86 6-92 1-117 (223)
152 TIGR01064 pyruv_kin pyruvate k 39.9 28 0.00071 15.6 2.7 35 149-187 404-438 (513)
153 COG0518 GuaA GMP synthase - Gl 39.6 29 0.00073 15.5 6.8 66 5-70 1-89 (198)
154 PRK13435 response regulator; P 39.6 29 0.00073 15.5 7.6 86 6-94 2-118 (141)
155 PRK07567 glutamine amidotransf 39.3 29 0.00074 15.5 7.5 66 5-70 1-103 (242)
156 PRK00074 guaA GMP synthase; Re 39.2 29 0.00074 15.5 3.2 68 3-70 2-86 (513)
157 pfam00201 UDPGT UDP-glucoronos 39.1 29 0.00074 15.5 3.0 32 35-69 118-149 (501)
158 PRK11867 2-oxoglutarate ferred 38.4 24 0.00062 16.0 2.2 34 45-78 23-64 (280)
159 PRK13141 hisH imidazole glycer 38.2 30 0.00077 15.4 6.1 63 7-70 2-83 (204)
160 TIGR00118 acolac_lg acetolacta 37.5 25 0.00063 15.9 2.2 35 38-72 462-501 (593)
161 cd06335 PBP1_ABC_ligand_bindin 36.5 32 0.00081 15.2 7.1 55 6-68 39-99 (347)
162 PRK09922 UDP-D-galactose:(gluc 36.1 32 0.00083 15.2 3.2 25 5-29 2-29 (361)
163 PRK10218 GTP-binding protein; 35.7 33 0.00084 15.1 2.7 32 151-182 483-519 (607)
164 cd03141 GATase1_Hsp31_like Typ 35.7 33 0.00084 15.1 3.4 46 29-74 83-137 (221)
165 cd03139 GATase1_PfpI_2 Type 1 35.6 33 0.00084 15.1 3.4 37 34-70 60-104 (183)
166 PRK09836 DNA-binding transcrip 35.4 33 0.00085 15.1 6.8 86 6-92 1-117 (226)
167 pfam10620 MdcG Phosphoribosyl- 35.3 23 0.00058 16.1 1.7 88 157-250 115-208 (210)
168 cd06334 PBP1_ABC_ligand_bindin 34.7 34 0.00087 15.0 7.3 55 6-69 39-99 (351)
169 TIGR01368 CPSaseIIsmall carbam 34.6 24 0.0006 16.0 1.7 35 36-70 237-278 (383)
170 pfam01936 DUF88 Protein of unk 34.5 34 0.00088 15.0 4.1 32 36-67 89-120 (140)
171 TIGR03135 malonate_mdcG holo-A 34.4 25 0.00063 15.9 1.7 36 157-192 110-146 (202)
172 cd03146 GAT1_Peptidase_E Type 34.3 35 0.00088 15.0 6.7 82 150-236 111-203 (212)
173 cd00502 DHQase_I Type I 3-dehy 34.2 35 0.00089 15.0 2.8 30 60-91 55-86 (225)
174 PRK12306 uvrC excinuclease ABC 33.8 35 0.0009 14.9 5.1 26 4-29 55-81 (519)
175 COG0710 AroD 3-dehydroquinate 33.5 30 0.00077 15.4 2.1 52 36-92 34-89 (231)
176 PRK00558 uvrC excinuclease ABC 33.5 36 0.00091 14.9 5.2 26 4-29 63-89 (609)
177 PRK09939 putative oxidoreducta 33.4 36 0.00091 14.9 7.1 33 36-68 208-245 (759)
178 COG1013 PorB Pyruvate:ferredox 33.3 31 0.00079 15.3 2.1 24 45-69 22-45 (294)
179 cd03375 TPP_OGFOR Thiamine pyr 33.2 36 0.00092 14.9 2.8 13 45-57 6-18 (193)
180 PTZ00300 pyruvate kinase; Prov 32.8 37 0.00093 14.8 2.4 35 149-187 346-380 (454)
181 PRK09206 pyruvate kinase; Prov 32.8 37 0.00093 14.8 2.6 36 148-187 367-402 (470)
182 PRK11340 phosphodiesterase Yae 32.4 37 0.00095 14.8 4.5 60 6-70 49-120 (270)
183 PRK09483 response regulator; P 32.4 37 0.00095 14.8 7.6 89 5-95 1-123 (216)
184 pfam07685 GATase_3 CobB/CobQ-l 32.3 37 0.00095 14.8 4.0 45 31-76 2-57 (158)
185 cd00332 PAL-HAL Phenylalanine 32.2 33 0.00085 15.1 2.1 19 57-76 39-57 (444)
186 PRK12689 flgF flagellar basal 32.0 33 0.00085 15.1 2.1 41 140-186 106-147 (253)
187 LOAD_uvrC_endov consensus 31.9 38 0.00097 14.7 5.2 55 16-70 58-117 (123)
188 cd00568 TPP_enzymes Thiamine p 31.6 35 0.0009 14.9 2.2 33 41-73 15-50 (168)
189 PRK13181 hisH imidazole glycer 31.5 38 0.00098 14.7 5.2 63 8-70 2-82 (199)
190 PRK13767 ATP-dependent helicas 31.5 14 0.00035 17.5 0.0 26 35-60 357-382 (878)
191 pfam01174 SNO SNO glutamine am 31.4 33 0.00085 15.1 2.0 39 32-70 29-78 (188)
192 TIGR01382 PfpI intracellular p 31.2 39 0.00099 14.7 4.2 38 31-68 71-117 (189)
193 cd03145 GAT1_cyanophycinase Ty 31.0 39 0.001 14.6 5.8 35 36-70 83-127 (217)
194 TIGR01127 ilvA_1Cterm threonin 30.3 40 0.001 14.6 4.1 166 13-210 102-311 (381)
195 PRK12640 flgF flagellar basal 30.3 38 0.00098 14.7 2.2 23 152-177 109-131 (246)
196 TIGR00222 panB 3-methyl-2-oxob 30.2 35 0.0009 14.9 2.0 36 36-75 109-144 (267)
197 PRK08199 acetolactate synthase 29.8 41 0.001 14.5 2.9 33 154-186 401-435 (553)
198 cd00288 Pyruvate_Kinase Pyruva 29.7 41 0.0011 14.5 2.7 35 149-187 373-407 (480)
199 PRK06354 pyruvate kinase; Prov 29.6 41 0.0011 14.5 2.4 36 148-187 373-408 (589)
200 PRK10840 transcriptional regul 29.4 42 0.0011 14.5 8.3 90 5-95 1-128 (216)
201 TIGR03567 FMN_reduc_SsuE FMN r 29.1 25 0.00065 15.8 1.1 19 151-173 65-83 (171)
202 PRK09522 bifunctional anthrani 28.9 43 0.0011 14.4 5.1 65 5-70 1-87 (531)
203 COG4581 Superfamily II RNA hel 28.8 28 0.0007 15.6 1.2 13 151-163 133-145 (1041)
204 PRK09628 oorB 2-oxoglutarate-a 28.5 43 0.0011 14.4 2.3 32 45-76 23-62 (281)
205 COG3829 RocR Transcriptional r 28.5 43 0.0011 14.4 2.7 32 39-70 270-306 (560)
206 PRK10624 L-1,2-propanediol oxi 28.4 43 0.0011 14.4 3.7 20 36-56 86-105 (381)
207 PRK11517 transcriptional regul 28.3 44 0.0011 14.3 7.8 85 6-92 1-116 (223)
208 TIGR00888 guaA_Nterm GMP synth 28.3 33 0.00084 15.1 1.5 22 49-70 59-80 (195)
209 pfam00221 PAL Phenylalanine an 28.3 44 0.0011 14.3 2.2 19 57-76 44-62 (477)
210 cd03169 GATase1_PfpI_1 Type 1 28.2 44 0.0011 14.3 4.1 42 30-71 70-119 (180)
211 COG1205 Distinct helicase fami 27.9 28 0.00072 15.5 1.1 24 36-59 382-406 (851)
212 pfam02775 TPP_enzyme_C Thiamin 27.8 27 0.00068 15.7 1.0 28 39-66 48-78 (150)
213 cd01745 GATase1_2 Subgroup of 27.8 45 0.0011 14.3 3.5 35 35-69 52-109 (189)
214 TIGR02915 PEP_resp_reg putativ 27.6 45 0.0011 14.3 2.5 34 36-69 163-202 (451)
215 cd03804 GT1_wbaZ_like This fam 27.0 46 0.0012 14.2 3.4 17 33-50 80-96 (351)
216 TIGR02176 pyruv_ox_red pyruvat 27.0 46 0.0012 14.2 2.7 58 143-205 660-726 (1194)
217 pfam00291 PALP Pyridoxal-phosp 26.9 46 0.0012 14.2 2.6 35 152-186 165-199 (251)
218 cd03822 GT1_ecORF704_like This 26.9 46 0.0012 14.2 3.1 29 36-64 76-109 (366)
219 PRK09935 transcriptional regul 26.8 46 0.0012 14.2 7.6 90 5-95 1-125 (210)
220 TIGR03407 urea_ABC_UrtA urea A 26.7 46 0.0012 14.2 6.3 40 17-64 55-96 (359)
221 KOG0782 consensus 26.5 45 0.0011 14.3 2.0 53 17-69 380-455 (1004)
222 PRK10046 dpiA two-component re 26.4 47 0.0012 14.1 8.6 90 1-92 1-123 (225)
223 TIGR00566 trpG_papA glutamine 26.0 35 0.00089 15.0 1.3 26 45-70 72-100 (212)
224 TIGR03566 FMN_reduc_MsuE FMN r 25.8 34 0.00086 15.0 1.2 19 151-173 68-86 (174)
225 PRK09367 histidine ammonia-lya 25.7 48 0.0012 14.1 2.2 26 57-83 47-73 (504)
226 TIGR01394 TypA_BipA GTP-bindin 25.7 41 0.001 14.5 1.6 41 147-188 490-537 (609)
227 cd00758 MoCF_BD MoCF_BD: molyb 25.7 48 0.0012 14.1 5.5 12 36-47 58-69 (133)
228 PRK05333 NAD-dependent deacety 25.7 49 0.0012 14.1 3.2 11 37-47 19-29 (285)
229 PRK00481 NAD-dependent deacety 25.2 50 0.0013 14.0 3.1 13 36-48 10-22 (239)
230 cd01413 SIR2_Af2 SIR2_Af2: Arc 25.1 50 0.0013 14.0 3.3 16 186-201 137-152 (222)
231 PRK03094 hypothetical protein; 24.6 39 0.001 14.6 1.4 59 5-65 1-62 (80)
232 TIGR03238 dnd_assoc_3 dnd syst 24.5 51 0.0013 13.9 3.4 23 53-75 84-107 (504)
233 TIGR02174 CXXU_selWTH selT/sel 24.3 51 0.0013 13.9 2.4 20 136-155 109-132 (144)
234 PRK10513 sugar phosphatase; Pr 24.3 38 0.00098 14.7 1.3 11 36-46 36-46 (270)
235 TIGR02177 PorB_KorB 2-oxoacid: 24.1 31 0.0008 15.3 0.8 37 33-69 66-116 (302)
236 pfam03575 Peptidase_S51 Peptid 23.9 53 0.0013 13.8 3.8 37 35-71 34-80 (154)
237 cd03136 GATase1_AraC_ArgR_like 23.8 53 0.0013 13.8 3.4 37 33-69 61-104 (185)
238 COG0655 WrbA Multimeric flavod 23.7 38 0.00096 14.7 1.2 11 151-161 75-85 (207)
239 PRK12564 carbamoyl phosphate s 23.7 53 0.0014 13.8 2.1 19 148-166 209-227 (355)
240 cd06336 PBP1_ABC_ligand_bindin 23.5 53 0.0014 13.8 6.5 54 7-68 44-102 (347)
241 pfam02887 PK_C Pyruvate kinase 23.5 53 0.0014 13.8 2.7 32 151-186 16-47 (117)
242 PRK00366 ispG 4-hydroxy-3-meth 23.4 54 0.0014 13.8 2.7 62 11-72 61-142 (367)
243 cd01410 SIRT7 SIRT7: Eukaryoti 23.2 54 0.0014 13.8 3.0 11 168-178 179-189 (206)
244 pfam03698 UPF0180 Uncharacteri 23.2 46 0.0012 14.2 1.5 59 5-65 1-62 (80)
245 cd06268 PBP1_ABC_transporter_L 23.1 54 0.0014 13.7 7.1 57 6-69 39-99 (298)
246 pfam00318 Ribosomal_S2 Ribosom 23.0 55 0.0014 13.7 4.7 37 38-76 57-95 (205)
247 cd01411 SIR2H SIR2H: Uncharact 23.0 55 0.0014 13.7 3.2 16 186-201 137-152 (225)
248 PRK02412 aroD 3-dehydroquinate 22.9 55 0.0014 13.7 2.6 52 37-90 49-104 (253)
249 cd01562 Thr-dehyd Threonine de 22.7 37 0.00094 14.8 0.9 36 152-187 166-201 (304)
250 cd03132 GATase1_catalase Type 22.3 56 0.0014 13.6 4.7 37 33-69 59-104 (142)
251 PRK00002 aroB 3-dehydroquinate 22.2 56 0.0014 13.6 2.3 49 19-68 76-127 (360)
252 PRK09181 aspartate kinase; Val 22.2 57 0.0014 13.6 6.8 40 136-179 236-284 (476)
253 cd02001 TPP_ComE_PpyrDC Thiami 22.0 51 0.0013 13.9 1.5 16 37-52 59-74 (157)
254 COG2272 PnbA Carboxylesterase 22.0 45 0.0012 14.3 1.3 39 37-75 95-142 (491)
255 COG2986 HutH Histidine ammonia 21.9 57 0.0015 13.6 3.8 26 57-83 47-73 (498)
256 TIGR02460 osmo_MPGsynth mannos 21.9 31 0.00078 15.3 0.4 113 70-191 168-317 (394)
257 pfam06057 VirJ Bacterial virul 21.8 58 0.0015 13.6 3.2 66 39-106 4-76 (192)
258 cd03805 GT1_ALG2_like This fam 21.7 58 0.0015 13.6 1.8 10 6-15 1-10 (392)
259 TIGR02691 arsC_pI258_fam arsen 21.6 27 0.00069 15.7 0.1 43 21-73 54-98 (129)
260 cd00156 REC Signal receiver do 21.5 59 0.0015 13.5 4.6 54 36-90 41-112 (113)
261 PRK10430 DNA-binding transcrip 21.5 59 0.0015 13.5 8.4 85 5-91 1-121 (239)
262 PRK06714 S-adenosylhomocystein 21.4 59 0.0015 13.5 3.3 71 5-75 1-82 (236)
263 KOG0647 consensus 21.4 30 0.00078 15.3 0.3 18 58-75 70-90 (347)
264 TIGR00073 hypB hydrogenase acc 21.3 59 0.0015 13.5 3.2 36 38-74 63-98 (225)
265 TIGR03669 urea_ABC_arch urea A 21.2 59 0.0015 13.5 4.7 52 7-66 41-98 (374)
266 TIGR01523 ATPase-IID_K-Na pota 21.0 47 0.0012 14.2 1.2 20 151-170 607-629 (1001)
267 PRK11083 DNA-binding response 20.8 60 0.0015 13.5 7.2 88 4-92 2-120 (229)
268 KOG2335 consensus 20.8 60 0.0015 13.5 6.5 55 35-92 72-138 (358)
269 PRK10063 predicted glycosyl tr 20.8 60 0.0015 13.4 3.7 47 6-52 1-51 (248)
270 PRK06381 threonine synthase; V 20.8 49 0.0012 14.0 1.2 18 152-169 167-184 (319)
271 TIGR03297 Ppyr-DeCO2ase phosph 20.8 59 0.0015 13.5 1.7 14 173-186 234-247 (361)
272 cd01653 GATase1 Type 1 glutami 20.7 61 0.0016 13.4 4.0 38 33-70 43-89 (115)
273 cd02013 TPP_Xsc_like Thiamine 20.6 61 0.0016 13.4 2.3 13 40-52 74-86 (196)
274 TIGR00432 arcsn_tRNA_tgt archa 20.4 62 0.0016 13.4 3.9 96 113-238 526-625 (658)
275 cd03377 TPP_PFOR_PNO Thiamine 20.4 62 0.0016 13.4 2.6 26 157-182 200-225 (365)
276 PRK10569 NAD(P)H-dependent FMN 20.3 43 0.0011 14.4 0.9 17 151-167 66-82 (191)
277 PRK12690 flgF flagellar basal 20.1 63 0.0016 13.4 2.5 41 140-186 99-141 (237)
278 TIGR00021 rpiA ribose 5-phosph 20.1 53 0.0013 13.8 1.3 24 62-89 17-40 (236)
No 1
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=100.00 E-value=0 Score=498.77 Aligned_cols=245 Identities=52% Similarity=0.863 Sum_probs=229.4
Q ss_pred ECCCHHHHHHHHHHHHHCCCCCHHHCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCC
Q ss_conf 55998999999999987078884557799998795489999999741287299415343320104458789998664201
Q gi|254780754|r 12 ASNAKKAQEAYDKFVKIYGNSTSEEADVIVVLGGDGFMLQSFHQSKEYDKPIYGMNCGSVGFLMNEYCIENLVERLSVAV 91 (264)
Q Consensus 12 ~~~~~~a~~~~~~l~~~~~~~~~~~~Dlii~iGGDGT~L~a~~~~~~~~~PilGIn~G~lGFL~~~~~~~~~~~~l~~~~ 91 (264)
++++++|++.+++|.++|+...++++|++|++|||||||+++|.+...++||+|||+|+||||||+++.+++.+.+....
T Consensus 1 a~~~~~a~~a~~~l~~~y~~~~~~eaDliIvlGGDGT~L~a~r~~~~~~~PilGIN~G~lGFL~n~~~~~~l~~~l~~~~ 80 (246)
T PRK04761 1 ASPTPEAQAALEELVKRYGDVPIEEADVIVALGGDGFMLQTLHRYMNSGKPVYGMNRGTVGFLMNEYSEDDLLERIAAAE 80 (246)
T ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHCCEEEEECCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 98998999999999998589996579999998987999999998741499379897797775445366778999999744
Q ss_pred CCCCCEEEEEEEECCCCCCCEEEEEEEEEEEEECCCCCCEEEEEEEEEEECCEEEEEEEECCEEEEECCCCHHHHHHHCC
Q ss_conf 24320344345421244442015775347997268764236788898766787653121035079822665044675229
Q gi|254780754|r 92 ECTFHPLKMTVFDYDNSICAENILAINEVSIIRKPGQNQLVQAAKLEVKVDDQVRLPELVCDGLVVSTPIGSTAYNFSAL 171 (264)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~AlNEi~i~r~~~~~~~~~~~~~~v~id~~~~~~~~~~DGvivSTptGSTAY~lSaG 171 (264)
...++++++.+...++. ....+||||++|.|+. +++++++|+|||++++++|+||||||||||||||||||||
T Consensus 81 ~~~~~~l~~~~~~~~g~--~~~~~AlNEvvi~r~~-----~~~~~l~i~Idg~~~~~~~~~DGvIVSTPtGSTAYnlSAG 153 (246)
T PRK04761 81 PTVLHPLRMTATDESGE--VHEALAINEVSLFRQT-----RQAAKLRISIDGKVRMEELVCDGVLVATPAGSTAYNLSAH 153 (246)
T ss_pred HEEEEEEEEEEEECCCC--EEEEEEECEEEEECCC-----CCEEEEEEEECCEEEEEEEEECEEEEECCCCCHHHHHHCC
T ss_conf 22887778999986997--9977761107985288-----7379999999999999888707899956986078786469
Q ss_pred CEEEEECCCEEEEECCCCCCHHHHHHCCCCCCCEEEEEECCCCCCEEEEEECCEECCCCCEEEEEECCCCCEEEEECCCC
Q ss_conf 81774088605863035433011110027884148999748788758999889881487789999879951899964888
Q gi|254780754|r 172 GPILPLESRHLLLTPVSPFKPRRWHGAILPNDVMIEIQVLEHKQRPVIATADRLAIEPVSRINVTQSSDITMRILSDSHR 251 (264)
Q Consensus 172 GpIv~p~~~~~~itpI~p~~l~~~rplVl~~~~~I~i~i~~~~~~~~~~~~D~~~~~~~~~i~I~~s~~~~~~li~~~~~ 251 (264)
|||++|++++|++||||||++++||++|+|++++|++++++++++|+.+++|++|++++++|+|+++++.+++|+|++++
T Consensus 154 GPIv~p~~~~l~lTPI~P~rpr~wrg~vl~~~s~I~i~v~~~~~rpv~~~aD~~e~r~v~~v~i~~~~~~~~~lL~d~~~ 233 (246)
T PRK04761 154 GPILPLGSNLLALTPISPFRPRRWRGALLPNSATVRFDVLEPDKRPVSAVADNTEVRDVVEVTIREDKDITVTLLFDPGH 233 (246)
T ss_pred CCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEECCCEEECCCEEEEEECCCCCEEEEECCCC
T ss_conf 95348998818995458878766646166887689999579887786999358078567589999978886899889899
Q ss_pred CHHHHHHHHHCC
Q ss_conf 899988887517
Q gi|254780754|r 252 SWSDRILTAQFS 263 (264)
Q Consensus 252 ~f~~ril~~kF~ 263 (264)
+|++|+++|||.
T Consensus 234 ~l~eril~eqf~ 245 (246)
T PRK04761 234 SLEERILSEQFG 245 (246)
T ss_pred CHHHHHHHHHHC
T ss_conf 979999987547
No 2
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=100.00 E-value=0 Score=458.26 Aligned_cols=248 Identities=21% Similarity=0.349 Sum_probs=213.3
Q ss_pred CEEEEEEEC-CCHHHHHHHHHHHHHCCCC-----------------------------------CHHHCCEEEEECCCHH
Q ss_conf 505999955-9989999999999870788-----------------------------------8455779999879548
Q gi|254780754|r 5 IQKIHFKAS-NAKKAQEAYDKFVKIYGNS-----------------------------------TSEEADVIVVLGGDGF 48 (264)
Q Consensus 5 ~~ki~i~~~-~~~~a~~~~~~l~~~~~~~-----------------------------------~~~~~Dlii~iGGDGT 48 (264)
|+||+++++ ..+++.+.++++.+++.+. ..+++||+|++|||||
T Consensus 1 M~kiGIi~~~~~~~a~~~a~~l~~~L~~~gi~v~l~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~IvlGGDGT 80 (305)
T PRK02649 1 MPKAGIIYNDGKPLAVRTAEELQDKLEAAGWEVVRASSSGGMLGYANPDQPVCHTGIDALVPEGFDSSMKFAIVLGGDGT 80 (305)
T ss_pred CCEEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEECCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCHH
T ss_conf 98899997389989999999999999988999999744123228787553211244111263335777339999837699
Q ss_pred HHHHHHHHHHCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEEEEEC---CCCCCCEEEEEEEEEEEEEC
Q ss_conf 999999974128729941534332010445878999866420124320344345421---24444201577534799726
Q gi|254780754|r 49 MLQSFHQSKEYDKPIYGMNCGSVGFLMNEYCIENLVERLSVAVECTFHPLKMTVFDY---DNSICAENILAINEVSIIRK 125 (264)
Q Consensus 49 ~L~a~~~~~~~~~PilGIn~G~lGFL~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~AlNEi~i~r~ 125 (264)
||+|+|.+...++|+||||+|+||||+ +++++++.+.|++...++|..+++.+++. .+.......+||||++|.|+
T Consensus 81 ~L~aar~~~~~~iPilGIN~G~LGFLt-~i~~~~~~~~l~~il~g~y~ie~R~~L~~~v~~~~~~~~~~~ALNdvvi~r~ 159 (305)
T PRK02649 81 VLSAARQTAPCGIPLLTINTGHLGFLT-EAYLNQLDEAIDQLLAGQYTIEERTMLTVSVMRGDQLRWEALSLNEMVLHRE 159 (305)
T ss_pred HHHHHHHHCCCCCCEEEEECCCEEEEC-CCCHHHHHHHHHHHHCCCCEEEEEEEEEEEEECCCCEEEEEEECCEEEEECC
T ss_conf 999999853369978989448623404-4798899999999982996588865689997048950300344141999657
Q ss_pred CCCCCEEEEEEEEEEECCEEEEEEEECCEEEEECCCCHHHHHHHCCCEEEEECCCEEEEECCCCCCHHHHHHCCCCCCCE
Q ss_conf 87642367888987667876531210350798226650446752298177408860586303543301111002788414
Q gi|254780754|r 126 PGQNQLVQAAKLEVKVDDQVRLPELVCDGLVVSTPIGSTAYNFSALGPILPLESRHLLLTPVSPFKPRRWHGAILPNDVM 205 (264)
Q Consensus 126 ~~~~~~~~~~~~~v~id~~~~~~~~~~DGvivSTptGSTAY~lSaGGpIv~p~~~~~~itpI~p~~l~~~rplVl~~~~~ 205 (264)
.. .++++++++|||++ +.+|+|||||||||||||||||||||||++|++++|++||||||++++ ||+|+|+++.
T Consensus 160 ~~----~~mi~~~v~id~~~-v~~~~~DGlIVsTPTGSTAYslSAGGPIv~P~~~~~vltPI~PHsL~~-RplVl~~~~~ 233 (305)
T PRK02649 160 PL----TSMCHFEIAIGRHA-PVDIAADGVILSTPTGSTAYSLSAGGPVITPDVPVLQLTPICPHSLAS-RALVFSDSEP 233 (305)
T ss_pred CC----CCEEEEEEEECCEE-EEEEECCEEEEECCCCHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCC-CCEEECCCCE
T ss_conf 87----65189999849999-899964779995788704505536995407998759995367664678-9889899986
Q ss_pred EEEEECCCCCCEEEEEECCE---ECCCCCEEEEEECCCCCEEEEECCCCCHHHHHHHHHCC
Q ss_conf 89997487887589998898---81487789999879951899964888899988887517
Q gi|254780754|r 206 IEIQVLEHKQRPVIATADRL---AIEPVSRINVTQSSDITMRILSDSHRSWSDRILTAQFS 263 (264)
Q Consensus 206 I~i~i~~~~~~~~~~~~D~~---~~~~~~~i~I~~s~~~~~~li~~~~~~f~~ril~~kF~ 263 (264)
|++..... +.+.++.||+ ++.++++|.|++|+ .++++++.++++||+ +||+||.
T Consensus 234 I~i~~~~~--~~~~l~~DGq~~~~l~~gd~i~i~~s~-~~~~li~~~~~~ff~-~Lr~KL~ 290 (305)
T PRK02649 234 VTVFPATP--ERLVMVVDGNAGCYVWPEDRVLIRRSP-YPVRFIRLQDPEFFR-VLREKLG 290 (305)
T ss_pred EEEEECCC--CCEEEEECCCCCEECCCCCEEEEEECC-CEEEEEECCCCCHHH-HHHHHCC
T ss_conf 99997789--867999869974574999999999889-738999739999899-9987668
No 3
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=100.00 E-value=0 Score=457.50 Aligned_cols=253 Identities=23% Similarity=0.351 Sum_probs=217.4
Q ss_pred CCCCCEEEEEEEC-CCHHHHHHHHHHHHHCCCC--------------------------CHHHCCEEEEECCCHHHHHHH
Q ss_conf 9876505999955-9989999999999870788--------------------------845577999987954899999
Q gi|254780754|r 1 MDRNIQKIHFKAS-NAKKAQEAYDKFVKIYGNS--------------------------TSEEADVIVVLGGDGFMLQSF 53 (264)
Q Consensus 1 m~~~~~ki~i~~~-~~~~a~~~~~~l~~~~~~~--------------------------~~~~~Dlii~iGGDGT~L~a~ 53 (264)
|..++|+|+++++ +.+++.+..+++.+++.+. ..+++|++|++|||||||+|+
T Consensus 1 M~~~fk~IgIi~k~~~~~a~~~~~~l~~~L~~~g~~v~ld~~~a~~l~~~~~~~~~~~~~~~~~Dlvi~lGGDGT~L~aa 80 (292)
T PRK03378 1 MNNHFKCIGIVGHPRHPTALTTHEMLYRWLCTKGYEVIVEQQIAHELQLKNVKTGTLAEIGQQADLAVVVGGDGNMLGAA 80 (292)
T ss_pred CCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEECHHHHHHCCCCCCCCCCHHHHCCCCCEEEEECCCHHHHHHH
T ss_conf 98769899999527985899999999999997899899834787652998655478668530568999977788999999
Q ss_pred HHHHHCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEEEEEC---CCCCCCEEEEEEEEEEEEECCCCCC
Q ss_conf 9974128729941534332010445878999866420124320344345421---2444420157753479972687642
Q gi|254780754|r 54 HQSKEYDKPIYGMNCGSVGFLMNEYCIENLVERLSVAVECTFHPLKMTVFDY---DNSICAENILAINEVSIIRKPGQNQ 130 (264)
Q Consensus 54 ~~~~~~~~PilGIn~G~lGFL~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~AlNEi~i~r~~~~~~ 130 (264)
|.+...++|++|||+|+||||+ +++++++.+.|++...+.|..+++..+.. .++......+||||++|.|+..
T Consensus 81 r~~~~~~~PilGIN~G~lGFLt-~~~~~~~~~~l~~i~~g~~~~~~R~~L~~~v~~~~~~~~~~~AlNevvi~~~~~--- 156 (292)
T PRK03378 81 RTLARYDIKVIGINRGNLGFLT-DLDPDNAQQQLADVLEGHYISEKRFLLEAQVCRQDQQKRISTAINEVVLHPGKV--- 156 (292)
T ss_pred HHHCCCCCCEEEEECCCCEECC-CCCHHHHHHHHHHHHHCCCEEEEEEEEEEEEECCCCCEECCCEEEEEEEECCCC---
T ss_conf 9854369968988379836888-678789999999998389577113258999971885110110047999824887---
Q ss_pred EEEEEEEEEEECCEEEEEEEECCEEEEECCCCHHHHHHHCCCEEEEECCCEEEEECCCCCCHHHHHHCCCCCCCEEEEEE
Q ss_conf 36788898766787653121035079822665044675229817740886058630354330111100278841489997
Q gi|254780754|r 131 LVQAAKLEVKVDDQVRLPELVCDGLVVSTPIGSTAYNFSALGPILPLESRHLLLTPVSPFKPRRWHGAILPNDVMIEIQV 210 (264)
Q Consensus 131 ~~~~~~~~v~id~~~~~~~~~~DGvivSTptGSTAY~lSaGGpIv~p~~~~~~itpI~p~~l~~~rplVl~~~~~I~i~i 210 (264)
.+++++++++||++ +.+|+|||||||||||||||||||||||++|++++|++||||||+++. ||+|+|++++|+|++
T Consensus 157 -~~~i~~~v~id~~~-~~~~~~DGlIvsTPTGSTAYslSAGGPIv~P~~~~~~ltPI~PHsLs~-RPlVl~~~~~I~i~v 233 (292)
T PRK03378 157 -AHMIEFEVYIDEIF-AFSQRSDGLIISTPTGSTAYSLSAGGPILTPSLDAITLVPMFPHTLSA-RPLVINSSSTIRLRF 233 (292)
T ss_pred -CCEEEEEEEECCEE-EEEEECCEEEEECCCCHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCC-CCEEECCCCEEEEEE
T ss_conf -41489999989989-899953669996687457767526996306998727998257775678-988989998799998
Q ss_pred CCCCCCEEEEEECCE---ECCCCCEEEEEECCCCCEEEEECCCCCHHHHHHHHHCC
Q ss_conf 487887589998898---81487789999879951899964888899988887517
Q gi|254780754|r 211 LEHKQRPVIATADRL---AIEPVSRINVTQSSDITMRILSDSHRSWSDRILTAQFS 263 (264)
Q Consensus 211 ~~~~~~~~~~~~D~~---~~~~~~~i~I~~s~~~~~~li~~~~~~f~~ril~~kF~ 263 (264)
.+.. ..+.+..||+ ++.++++|.|++|+ .++++++.++++||+ .||+|+.
T Consensus 234 ~~~~-~~~~vs~DGq~~~~l~~gd~I~I~~s~-~~~~li~~~~~~ff~-~Lr~KL~ 286 (292)
T PRK03378 234 SHRR-SDLEISCDSQIALPIQEGEEVLIRRSD-YHLNLIHPKDYSYFN-TLSTKLG 286 (292)
T ss_pred CCCC-CCEEEEECCCCCEECCCCCEEEEEECC-CEEEEEECCCCCHHH-HHHHHCC
T ss_conf 3699-857999839974363999999999899-658999619999899-9975577
No 4
>PRK04759 consensus
Probab=100.00 E-value=0 Score=456.52 Aligned_cols=254 Identities=23% Similarity=0.367 Sum_probs=218.6
Q ss_pred CCCCCEEEEEEEC-CCHHHHHHHHHHHHHCCCC---------------------------CHHHCCEEEEECCCHHHHHH
Q ss_conf 9876505999955-9989999999999870788---------------------------84557799998795489999
Q gi|254780754|r 1 MDRNIQKIHFKAS-NAKKAQEAYDKFVKIYGNS---------------------------TSEEADVIVVLGGDGFMLQS 52 (264)
Q Consensus 1 m~~~~~ki~i~~~-~~~~a~~~~~~l~~~~~~~---------------------------~~~~~Dlii~iGGDGT~L~a 52 (264)
|.+.+++++++++ ..+++.+..+++.+++.+. ..+++|++|++|||||+|++
T Consensus 1 M~~~f~~I~Iv~k~~~~~~~~~~~~l~~~L~~~g~~v~vd~~~~~~l~~~~~~~~~~~~~l~~~~Dlvi~lGGDGTlL~a 80 (294)
T PRK04759 1 MKKPFNVIAIIGKPRDQQAIQTHKELYHWLTSLGYTVFIDDRLAAILTDVPQEHFASLVELGKKADLAIVVGGDGNMLGA 80 (294)
T ss_pred CCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEECHHHHHHCCCCCCCCCCCHHHCCCCCCEEEEECCCHHHHHH
T ss_conf 99999799999417997999999999999986899999916886553347722237755637665689998478589999
Q ss_pred HHHHHHCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEEEEEC---CCCCCCEEEEEEEEEEEEECCCCC
Q ss_conf 99974128729941534332010445878999866420124320344345421---244442015775347997268764
Q gi|254780754|r 53 FHQSKEYDKPIYGMNCGSVGFLMNEYCIENLVERLSVAVECTFHPLKMTVFDY---DNSICAENILAINEVSIIRKPGQN 129 (264)
Q Consensus 53 ~~~~~~~~~PilGIn~G~lGFL~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~AlNEi~i~r~~~~~ 129 (264)
+|.+...++|++|||+|+||||+ +++++++.+.|++...+.|..+++..+.. .++......+||||++|.|+..
T Consensus 81 ar~~~~~~~PilgiN~G~lGFLt-~~~~~~~~~~l~~il~g~~~~~~R~~L~~~v~~~~~~~~~~~aLNevvi~~~~~-- 157 (294)
T PRK04759 81 ARVLSRFDISVIGVNRGNLGFLT-DLNPEDFQERLQAVLDGEYIEEERFLLEAEIHRHGQVKSHNAALNEAVLHPGQI-- 157 (294)
T ss_pred HHHHCCCCCCEEEEECCCEEEEC-CCCHHHHHHHHHHHHCCCCEEEEEEEEEEEEEECCEEEEEHHEEEEEECCCCCC--
T ss_conf 99860169968988458646741-468889999999997599579663148999995891664200000320047876--
Q ss_pred CEEEEEEEEEEECCEEEEEEEECCEEEEECCCCHHHHHHHCCCEEEEECCCEEEEECCCCCCHHHHHHCCCCCCCEEEEE
Q ss_conf 23678889876678765312103507982266504467522981774088605863035433011110027884148999
Q gi|254780754|r 130 QLVQAAKLEVKVDDQVRLPELVCDGLVVSTPIGSTAYNFSALGPILPLESRHLLLTPVSPFKPRRWHGAILPNDVMIEIQ 209 (264)
Q Consensus 130 ~~~~~~~~~v~id~~~~~~~~~~DGvivSTptGSTAY~lSaGGpIv~p~~~~~~itpI~p~~l~~~rplVl~~~~~I~i~ 209 (264)
.+++++++++||++ +.+|+|||+|||||||||||||||||||+||++++|++||||||+++. ||+|+|++++|+++
T Consensus 158 --~~~i~~~v~id~~~-~~~~~aDGlIvsTPTGSTAYslSAGGPIv~P~~~~~~ltPI~PHsLs~-RPlVl~~~~~i~i~ 233 (294)
T PRK04759 158 --AHMIEFEVYIDDSF-AFSQRSDGLIVSTPTGSTAYSLSGGGPILSPSLNAISLVPMFPHTLSS-RPLVVDGNRRIKLL 233 (294)
T ss_pred --CCEEEEEEEEEEEE-EEEECCCEEEEECCCCHHHHHHHCCCCEECCCCCEEEEEECCCCCCCC-CCEEECCCCEEEEE
T ss_conf --41389999996189-686048879995786377887536997757998739998668765679-98897999859999
Q ss_pred ECCCCCCEEEEEECCE---ECCCCCEEEEEECCCCCEEEEECCCCCHHHHHHHHHCC
Q ss_conf 7487887589998898---81487789999879951899964888899988887517
Q gi|254780754|r 210 VLEHKQRPVIATADRL---AIEPVSRINVTQSSDITMRILSDSHRSWSDRILTAQFS 263 (264)
Q Consensus 210 i~~~~~~~~~~~~D~~---~~~~~~~i~I~~s~~~~~~li~~~~~~f~~ril~~kF~ 263 (264)
+....+..+.+..||+ ++.++++|.|++|+ .++++++.++++||+ +|++|+.
T Consensus 234 v~~~~~~~~~l~~DG~~~~~l~~gd~I~I~~s~-~~~~li~~~~~~ff~-~Lr~KL~ 288 (294)
T PRK04759 234 VSPENRGTQEVSCDGQVSLPVSPGDEIHIYQSP-NVLKLIHPKDYSYYH-VLRNKLG 288 (294)
T ss_pred ECCCCCCCEEEEECCCCCEECCCCCEEEEEECC-CEEEEEECCCCCHHH-HHHHHCC
T ss_conf 845888857999999975553999999999889-658999569999899-9975678
No 5
>PRK02155 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=100.00 E-value=0 Score=455.15 Aligned_cols=252 Identities=28% Similarity=0.419 Sum_probs=216.3
Q ss_pred CCCCCEEEEEEEC-CCHHHHHHHHHHHHHCCCC----------------------C----HHHCCEEEEECCCHHHHHHH
Q ss_conf 9876505999955-9989999999999870788----------------------8----45577999987954899999
Q gi|254780754|r 1 MDRNIQKIHFKAS-NAKKAQEAYDKFVKIYGNS----------------------T----SEEADVIVVLGGDGFMLQSF 53 (264)
Q Consensus 1 m~~~~~ki~i~~~-~~~~a~~~~~~l~~~~~~~----------------------~----~~~~Dlii~iGGDGT~L~a~ 53 (264)
|..++++++++++ ..+++.+.++++..++.+. . .+++|++|++|||||+|+++
T Consensus 1 M~~~fk~Vgiv~k~~~~~~~~~~~~l~~~L~~~g~~v~~e~~~a~~~~~~~~~~~~~~~~~~~~Dlvi~lGGDGTlL~~a 80 (291)
T PRK02155 1 MGSQFRTVALVGRYQTPGIAEPLEALAACIAKRGFEVVFEADTARNTGLTGYPALTPAEIGARADVAVVLGGDGTMLGIG 80 (291)
T ss_pred CCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHCCCCCCCCCCHHHHCCCCCEEEEECCCHHHHHHH
T ss_conf 99879899999148986899999999999997889999955577763998877479799463767899976788999999
Q ss_pred HHHHHCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEEEEEC---CCCCCCEEEEEEEEEEEEECCCCCC
Q ss_conf 9974128729941534332010445878999866420124320344345421---2444420157753479972687642
Q gi|254780754|r 54 HQSKEYDKPIYGMNCGSVGFLMNEYCIENLVERLSVAVECTFHPLKMTVFDY---DNSICAENILAINEVSIIRKPGQNQ 130 (264)
Q Consensus 54 ~~~~~~~~PilGIn~G~lGFL~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~AlNEi~i~r~~~~~~ 130 (264)
|.+...++|+||||+|+||||+ +++++++.+.|.+...+.|..+++..+.. .++......+||||++|.|+..
T Consensus 81 ~~~~~~~~PilGiN~G~lGFLt-~~~~~~~~~~l~~i~~g~~~~~~R~~L~~~v~~~~~~~~~~~AlNdvvi~r~~~--- 156 (291)
T PRK02155 81 RQLAPYGTPLIGINHGRLGFIT-DIPLSDMQEALPPMLAGNYEEEERSLLEARVVRDGEPIYHALAFNDVVVNRSGF--- 156 (291)
T ss_pred HHHHCCCCCEEEEECCCEEECC-CCCHHHHHHHHHHHHCCCCEEEEECEEEEEEEECCEEEEECCCCCCEEEECCCC---
T ss_conf 9871159968998547513406-887788999999998599779550218999995991686313324179935887---
Q ss_pred EEEEEEEEEEECCEEEEEEEECCEEEEECCCCHHHHHHHCCCEEEEECCCEEEEECCCCCCHHHHHHCCCCCCCEEEEEE
Q ss_conf 36788898766787653121035079822665044675229817740886058630354330111100278841489997
Q gi|254780754|r 131 LVQAAKLEVKVDDQVRLPELVCDGLVVSTPIGSTAYNFSALGPILPLESRHLLLTPVSPFKPRRWHGAILPNDVMIEIQV 210 (264)
Q Consensus 131 ~~~~~~~~v~id~~~~~~~~~~DGvivSTptGSTAY~lSaGGpIv~p~~~~~~itpI~p~~l~~~rplVl~~~~~I~i~i 210 (264)
.+++++++++||++ +.+|+|||||||||||||||||||||||++|++++|++||||||++++ ||+|+|++++|++++
T Consensus 157 -~~m~~~~v~id~~~-~~~~~~DGlIvsTPTGSTAYsLSAGGPIv~P~~~~i~ltPI~PHsLs~-RPlVv~~~~~i~i~~ 233 (291)
T PRK02155 157 -SGMVELRVSVDGRF-MYNQRADGLIVATPTGSTAYALSAGGPILHPQLQGWVLVPIAPHALSN-RPIVLPDDSEVAIEI 233 (291)
T ss_pred -CCCEEEEEEECCEE-EEEEECCEEEEECCCCHHHHHHHCCCCEECCCCCEEEEEECCCCCCCC-CCEEECCCCEEEEEE
T ss_conf -66169999989999-999971779995788525656526996537886629998368765689-988989998799998
Q ss_pred CCCCCCEEEEEECCE---ECCCCCEEEEEECCCCCEEEEECCCCCHHHHHHHHHCC
Q ss_conf 487887589998898---81487789999879951899964888899988887517
Q gi|254780754|r 211 LEHKQRPVIATADRL---AIEPVSRINVTQSSDITMRILSDSHRSWSDRILTAQFS 263 (264)
Q Consensus 211 ~~~~~~~~~~~~D~~---~~~~~~~i~I~~s~~~~~~li~~~~~~f~~ril~~kF~ 263 (264)
... +.+.+..||+ ++.++++|.|++|+ .+++++++++++||+ +||+|+.
T Consensus 234 ~~~--~~~~v~~DGq~~~~l~~gd~i~I~~s~-~~~~li~~~~~~ff~-~Lr~KL~ 285 (291)
T PRK02155 234 VSG--RDVSVNFDMQSLTSLLLGDRIEVRRSK-HTVRFLHPVGYSYYA-TLRKKLH 285 (291)
T ss_pred CCC--CCEEEEEECCCCEEECCCCEEEEEECC-CEEEEEECCCCCHHH-HHHHHCC
T ss_conf 579--974999989974470999999999889-737999659999999-9986578
No 6
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=100.00 E-value=0 Score=453.39 Aligned_cols=252 Identities=20% Similarity=0.350 Sum_probs=214.9
Q ss_pred CCCEEEEEEEC-CCHHHHHHHHHHHHHCCCC--------------------------CHHHCCEEEEECCCHHHHHHHHH
Q ss_conf 76505999955-9989999999999870788--------------------------84557799998795489999999
Q gi|254780754|r 3 RNIQKIHFKAS-NAKKAQEAYDKFVKIYGNS--------------------------TSEEADVIVVLGGDGFMLQSFHQ 55 (264)
Q Consensus 3 ~~~~ki~i~~~-~~~~a~~~~~~l~~~~~~~--------------------------~~~~~Dlii~iGGDGT~L~a~~~ 55 (264)
+.+||++++++ ..+++.+..+++.+++.+. ..+.+|++|++|||||||+++|.
T Consensus 2 ~~~k~vgIv~k~~~~~a~~~~~~l~~~L~~~gi~v~ld~~~a~~~~~~~~~~~~~~~~~~~~Dlii~lGGDGT~L~~~~~ 81 (296)
T PRK01231 2 EQFRNIGLIGRLGSSQVVETLRRLKRFLLDRHLHVILEEETAEVLPGHGLQTVSRKLLGEVCDLVIVVGGDGSLLGAARA 81 (296)
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHCCCCCCCCCCHHHCCCCEEEEEEECCCCHHHHHHHH
T ss_conf 99989999984898799999999999998788999993247766587886624533416530499995787289999999
Q ss_pred HHHCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEEEEE---CCCCCCCEEEEEEEEEEEEECCCCCCEE
Q ss_conf 7412872994153433201044587899986642012432034434542---1244442015775347997268764236
Q gi|254780754|r 56 SKEYDKPIYGMNCGSVGFLMNEYCIENLVERLSVAVECTFHPLKMTVFD---YDNSICAENILAINEVSIIRKPGQNQLV 132 (264)
Q Consensus 56 ~~~~~~PilGIn~G~lGFL~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~AlNEi~i~r~~~~~~~~ 132 (264)
+...++|+||||+|+||||+ +++++++.+.|++...+.|..+++..+. .+++......+||||++|.|+.. .
T Consensus 82 ~~~~~~PilGiN~G~lGFL~-~~~~~~~~~~l~~i~~g~~~~~~R~~L~~~v~~~~~~~~~~~AlNdvvi~~~~~----~ 156 (296)
T PRK01231 82 LARHNVPVLGINRGRLGFLT-DIRPDELEFKLAEVLDGHYQLESRFLLEAEVRRGGEAIGQGDALNDVVLHPGKS----T 156 (296)
T ss_pred HCCCCCCEEEEECCCCEEEC-CCCHHHHHHHHHHHHHCCCEEEEEEEEEEEEEECCEEEEEEEEEEEEEEECCCC----C
T ss_conf 60369978988558700634-568899999999998189877033479999997998875455666799974787----5
Q ss_pred EEEEEEEEECCEEEEEEEECCEEEEECCCCHHHHHHHCCCEEEEECCCEEEEECCCCCCHHHHHHCCCCCCCEEEEEECC
Q ss_conf 78889876678765312103507982266504467522981774088605863035433011110027884148999748
Q gi|254780754|r 133 QAAKLEVKVDDQVRLPELVCDGLVVSTPIGSTAYNFSALGPILPLESRHLLLTPVSPFKPRRWHGAILPNDVMIEIQVLE 212 (264)
Q Consensus 133 ~~~~~~v~id~~~~~~~~~~DGvivSTptGSTAY~lSaGGpIv~p~~~~~~itpI~p~~l~~~rplVl~~~~~I~i~i~~ 212 (264)
+++++++++||++ +.+|+|||+|||||||||||||||||||++|++++|++||||||+++. ||+|+|++++|++++..
T Consensus 157 ~~i~~~v~id~~~-~~~~~aDGlIvsTPTGSTAYslSAGGPIv~P~~~~i~itPI~PHsL~~-RPlVl~~~~~I~i~~~~ 234 (296)
T PRK01231 157 RMIEFELYIDGQF-VYSQKSDGLIVATPTGSTAYALSAGGPIMHPKLDAIVLVPMYPHTLSS-RPIVVDGNSEIKIVISE 234 (296)
T ss_pred CEEEEEEEECCEE-EEEEECCEEEEECCCCHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCC-CCEEECCCCEEEEEECC
T ss_conf 4266787508869-999974759996787456756416995407998749994368764679-98898999879999877
Q ss_pred CCCCEEEEEECCE---ECCCCCEEEEEECCCCCEEEEECCCCCHHHHHHHHHCC
Q ss_conf 7887589998898---81487789999879951899964888899988887517
Q gi|254780754|r 213 HKQRPVIATADRL---AIEPVSRINVTQSSDITMRILSDSHRSWSDRILTAQFS 263 (264)
Q Consensus 213 ~~~~~~~~~~D~~---~~~~~~~i~I~~s~~~~~~li~~~~~~f~~ril~~kF~ 263 (264)
..+..+.+..||+ ++.++++|.|++|+ .++++++.++++||+ .||+|+.
T Consensus 235 ~~~~~~~v~~DGq~~~~l~~gd~I~I~~s~-~~~~li~~~~~~ff~-~Lr~KL~ 286 (296)
T PRK01231 235 DNRIYPQVSCDGQNHVTCAPGDTITIRKKP-QKLRLIHPLDHNFYE-ACRTKLG 286 (296)
T ss_pred CCCCCEEEEECCCCCEECCCCCEEEEEECC-CEEEEEECCCCCHHH-HHHHHCC
T ss_conf 888746999879841571999999999888-607999779999899-9975578
No 7
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=100.00 E-value=0 Score=451.87 Aligned_cols=252 Identities=25% Similarity=0.391 Sum_probs=215.8
Q ss_pred CCCCCEEEEEEEC-CCHHHHHHHHHHHHHCCCC-------------------------------CHHHCCEEEEECCCHH
Q ss_conf 9876505999955-9989999999999870788-------------------------------8455779999879548
Q gi|254780754|r 1 MDRNIQKIHFKAS-NAKKAQEAYDKFVKIYGNS-------------------------------TSEEADVIVVLGGDGF 48 (264)
Q Consensus 1 m~~~~~ki~i~~~-~~~~a~~~~~~l~~~~~~~-------------------------------~~~~~Dlii~iGGDGT 48 (264)
|...+++|+++++ ..+++.+.++++.+++.+. ..+.+|++|++|||||
T Consensus 1 M~~~fk~Igiv~k~~~~~~~~~~~~l~~~L~~~g~~v~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dlii~lGGDGT 80 (296)
T PRK04539 1 MNSPFHNIGIVTRPNTPDIQDTAHTLITFLKQHGFTVYLDEVGVKEGCIYTQDTVGCHIVNKTELGQYCDLVAVLGGDGT 80 (296)
T ss_pred CCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEECCHHHHCCCCCCCCCCCCCCCHHHHCCCCCEEEEECCCHH
T ss_conf 99999789999708987999999999999997879999965411203546433456554686781646779999787089
Q ss_pred HHHHHHHHHHCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEEEEE---CCCCCCCEEEEEEEEEEEEEC
Q ss_conf 99999997412872994153433201044587899986642012432034434542---124444201577534799726
Q gi|254780754|r 49 MLQSFHQSKEYDKPIYGMNCGSVGFLMNEYCIENLVERLSVAVECTFHPLKMTVFD---YDNSICAENILAINEVSIIRK 125 (264)
Q Consensus 49 ~L~a~~~~~~~~~PilGIn~G~lGFL~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~AlNEi~i~r~ 125 (264)
||+|+|.+...++||+|||+|+||||+ +++.+++.+.|++...+.|..+++..+. .+++......+||||++|.|+
T Consensus 81 lL~a~r~~~~~~~PilGiN~G~lGFLt-~~~~~~~~~~l~~il~g~~~~~~R~~l~~~~~~~~~~~~~~~alNevvi~r~ 159 (296)
T PRK04539 81 FLSVAREIAPRAVPIIGINQGHLGFLT-QIPREYMTDKLLPVLEGKYLAEERILIEAALIREGKTAERALALNDAVLSRG 159 (296)
T ss_pred HHHHHHHHHHCCCCEEEEECCCEEEEC-CCCHHHHHHHHHHHHCCCCEEEEEEEEEEEEEECCCEEEEEEEECCCCEECC
T ss_conf 999999860059978998447544525-6687999999999975896362430078999958956643356333110348
Q ss_pred CCCCCEEEEEEEEEEECCEEEEEEEECCEEEEECCCCHHHHHHHCCCEEEEECCCEEEEECCCCCCHHHHHHCCCCCCCE
Q ss_conf 87642367888987667876531210350798226650446752298177408860586303543301111002788414
Q gi|254780754|r 126 PGQNQLVQAAKLEVKVDDQVRLPELVCDGLVVSTPIGSTAYNFSALGPILPLESRHLLLTPVSPFKPRRWHGAILPNDVM 205 (264)
Q Consensus 126 ~~~~~~~~~~~~~v~id~~~~~~~~~~DGvivSTptGSTAY~lSaGGpIv~p~~~~~~itpI~p~~l~~~rplVl~~~~~ 205 (264)
.. .+++++++++||++ +.+|+|||+|||||||||||||||||||++|+++++++||||||++++ ||+|+|++++
T Consensus 160 ~~----~~~i~~~v~id~~~-~~~~~~DGlIvsTPTGSTAYslSaGGPIv~P~~~~~~ltPI~phsl~~-RPlVv~~~~~ 233 (296)
T PRK04539 160 GA----GQMIEFEVFVNREF-VYTQRSDGLIVSTPTGSTAYSLAAGGPIMQAGLHAFTLVPICPQSMTN-RPIAIPDTSE 233 (296)
T ss_pred CC----CCEEEEEEEECCEE-EEEEECCEEEEECCCCHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCC-CCEEECCCCE
T ss_conf 87----64068999987789-999974769996787456766526995307998728996057664679-9889899977
Q ss_pred EEEEECCCCCCEEEEEECCE---ECCCCCEEEEEECCCCCEEEEECCCCCHHHHHHHHHCC
Q ss_conf 89997487887589998898---81487789999879951899964888899988887517
Q gi|254780754|r 206 IEIQVLEHKQRPVIATADRL---AIEPVSRINVTQSSDITMRILSDSHRSWSDRILTAQFS 263 (264)
Q Consensus 206 I~i~i~~~~~~~~~~~~D~~---~~~~~~~i~I~~s~~~~~~li~~~~~~f~~ril~~kF~ 263 (264)
|++++... ..+.++.||+ ++.++++|.|++|+ .++++++.++++||+ .||+|+.
T Consensus 234 i~i~~~~~--~~~~l~~DGq~~~~l~~gd~I~I~~s~-~~~~li~~~~~~f~~-~Lr~KL~ 290 (296)
T PRK04539 234 IEILVTQG--GDARVHFDGQTHIDVQNLDRITIRRYR-NPLRILHPTDYQYFK-TLRQKLH 290 (296)
T ss_pred EEEEECCC--CCEEEEECCCCCEECCCCCEEEEEECC-CEEEEEECCCCCHHH-HHHHHCC
T ss_conf 99998889--978999909985371998999999889-769999749999899-9864577
No 8
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=100.00 E-value=0 Score=448.71 Aligned_cols=248 Identities=19% Similarity=0.411 Sum_probs=211.0
Q ss_pred EEEEEEECC-CHHHHHHHHHHHHHCCCC------------------------------CHHHCCEEEEECCCHHHHHHHH
Q ss_conf 059999559-989999999999870788------------------------------8455779999879548999999
Q gi|254780754|r 6 QKIHFKASN-AKKAQEAYDKFVKIYGNS------------------------------TSEEADVIVVLGGDGFMLQSFH 54 (264)
Q Consensus 6 ~ki~i~~~~-~~~a~~~~~~l~~~~~~~------------------------------~~~~~Dlii~iGGDGT~L~a~~ 54 (264)
|||+++.+. .+++.+..+++.+++.+. ...++|++|++|||||||+|+|
T Consensus 1 MKIaIigk~~~~~~~~~~~~Li~~L~~~g~~v~le~~~a~~l~~~~~~~~~~~~~~~~~~~~~Dlvi~iGGDGT~L~a~~ 80 (290)
T PRK01911 1 MKIAIFGQTYQASKSPHIKRLFELLEEHGAEIYIEEEFLNFLTQDLKFEPKYKGFFDGNNFDFDMVISIGGDGTFLRAAA 80 (290)
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHH
T ss_conf 99999888898479999999999999889989997689787765125664312321135777779999787689999999
Q ss_pred HHHHCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEEEEEC--CCCCCCEEEEEEEEEEEEECCCCCCEE
Q ss_conf 974128729941534332010445878999866420124320344345421--244442015775347997268764236
Q gi|254780754|r 55 QSKEYDKPIYGMNCGSVGFLMNEYCIENLVERLSVAVECTFHPLKMTVFDY--DNSICAENILAINEVSIIRKPGQNQLV 132 (264)
Q Consensus 55 ~~~~~~~PilGIn~G~lGFL~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~AlNEi~i~r~~~~~~~~ 132 (264)
.+.+.++|++|||+|+||||+ +++++++.+.|++...+.|..+++.+++. +++......+||||++|.|+...
T Consensus 81 ~~~~~~iPilGiN~G~lGFL~-~~~~~~~~~~l~~i~~g~y~~~~r~~l~~~~~~~~~~~~~~ALNevvi~~~~~~---- 155 (290)
T PRK01911 81 RVGNSGIPILGINTGRLGFLA-DVSPEEIEETIDELLQGKYTIEERSLLQLTCDPKSFKDLNYALNEIAVLKRDTS---- 155 (290)
T ss_pred HHHHCCCCEEEEECCCCEEEE-CCCHHHHHHHHHHHHCCCCEEEEEEEEEEEEECCCCEECCCEEEEEEEEECCCC----
T ss_conf 861259968999448813750-368889999999998699789877259999938961035465457898506884----
Q ss_pred EEEEEEEEECCEEEEEEEECCEEEEECCCCHHHHHHHCCCEEEEECCCEEEEECCCCCCHHHHHHCCCCCCCEEEEEECC
Q ss_conf 78889876678765312103507982266504467522981774088605863035433011110027884148999748
Q gi|254780754|r 133 QAAKLEVKVDDQVRLPELVCDGLVVSTPIGSTAYNFSALGPILPLESRHLLLTPVSPFKPRRWHGAILPNDVMIEIQVLE 212 (264)
Q Consensus 133 ~~~~~~v~id~~~~~~~~~~DGvivSTptGSTAY~lSaGGpIv~p~~~~~~itpI~p~~l~~~rplVl~~~~~I~i~i~~ 212 (264)
+++++++++||++ +.+|+|||+|||||||||||||||||||++|++++|++||||||++++ ||+|+|++++|++++..
T Consensus 156 ~~i~~~~~id~~~-~~~~~~DGlIvsTPTGSTAYslSaGGPIv~P~~~~~~ltPI~PhsL~~-RplVl~~~s~I~i~~~~ 233 (290)
T PRK01911 156 SMITIHTYLNGEY-LTSYWADGLIIATPTGSTAYSLSCGGPIIVPHSNNFVITPIAPHSLNV-RPLVIPDDTEITLEVES 233 (290)
T ss_pred CCEEEEEEECCEE-EEEEECCEEEEECCCCHHHHHHHCCCCEECCCCCCEEEEECCCCCCCC-CCEEECCCCEEEEEECC
T ss_conf 5033689987899-899953679996788557868646995556987608997557664679-98898999879999858
Q ss_pred CCCCEEEEEECCE--ECCCCCEEEEEECCCCCEEEEECCCCCHHHHHHHHHCC
Q ss_conf 7887589998898--81487789999879951899964888899988887517
Q gi|254780754|r 213 HKQRPVIATADRL--AIEPVSRINVTQSSDITMRILSDSHRSWSDRILTAQFS 263 (264)
Q Consensus 213 ~~~~~~~~~~D~~--~~~~~~~i~I~~s~~~~~~li~~~~~~f~~ril~~kF~ 263 (264)
.. +.+.+..||+ .+.++++|.|++|+ .+++++++++++||+ .||+|..
T Consensus 234 ~~-~~~~l~~DG~~~~l~~~d~i~i~ks~-~~~~li~~~~~~f~~-~Lr~KL~ 283 (290)
T PRK01911 234 RS-KNFLVSLDGRSETVPNDTELTIKKAD-YTIKVVKRFNHTFYK-TLRNKLM 283 (290)
T ss_pred CC-CCEEEEECCCCEECCCCCEEEEEECC-CEEEEEECCCCCHHH-HHHHHCC
T ss_conf 99-84799988982061999999999899-768999769999899-9863177
No 9
>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=100.00 E-value=0 Score=445.19 Aligned_cols=243 Identities=19% Similarity=0.299 Sum_probs=203.2
Q ss_pred EEEEEEECCCHHHHHHHHHHHHHCCC--CCHHHCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCHHHH
Q ss_conf 05999955998999999999987078--8845577999987954899999997412872994153433201044587899
Q gi|254780754|r 6 QKIHFKASNAKKAQEAYDKFVKIYGN--STSEEADVIVVLGGDGFMLQSFHQSKEYDKPIYGMNCGSVGFLMNEYCIENL 83 (264)
Q Consensus 6 ~ki~i~~~~~~~a~~~~~~l~~~~~~--~~~~~~Dlii~iGGDGT~L~a~~~~~~~~~PilGIn~G~lGFL~~~~~~~~~ 83 (264)
||++|+++++++|+++.+++.+.+.+ ..++++|++|++|||||||+|+|.+...++|++|||+|+||||+ +++.+++
T Consensus 1 mk~~i~~~~~~~s~~~~~~l~~~~~~~~~~~d~~DlviviGGDGT~L~a~~~~~~~~iPilGIN~G~lGFLt-~~~~~~~ 79 (259)
T PRK00561 1 MKYKIFASTTPQTEPVLPKLKKVLKKKLAVEDGADYLFVLGGDGFFVSTAANYNCAGCKVVGINTGHLGFYT-SFNETDL 79 (259)
T ss_pred CEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCHHHHHHHHHHHCCCCCCEEEEECCCCEEEE-CCCHHHH
T ss_conf 969999388865799999999998547867889999999897199999999855479968999669733641-5898899
Q ss_pred HHHHHHCCCCCCCEEEEEEEECCCCCCCEEEEEEEEEEEEECCCCCCEEEEEEEEEEECCEEEEEEEECCEEEEECCCCH
Q ss_conf 98664201243203443454212444420157753479972687642367888987667876531210350798226650
Q gi|254780754|r 84 VERLSVAVECTFHPLKMTVFDYDNSICAENILAINEVSIIRKPGQNQLVQAAKLEVKVDDQVRLPELVCDGLVVSTPIGS 163 (264)
Q Consensus 84 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~AlNEi~i~r~~~~~~~~~~~~~~v~id~~~~~~~~~~DGvivSTptGS 163 (264)
.+.+..... .+...++..++... ..+.++||||++|.+.. +..++|+|||++ +++|+||||||||||||
T Consensus 80 ~~~~~~~l~-~~~~~~~~~l~~~~--~~~~~~alNe~~i~~~~-------~~~i~v~Id~~~-~~~~r~DGlIvSTPTGS 148 (259)
T PRK00561 80 DQNFANKLD-QLKFTQIDLLEVQI--DDQIHLVLNELAVYTNT-------AYPINIFIDNEF-WEKYRGSGLLIGPRTGS 148 (259)
T ss_pred HHHHHHHHH-HCCEEEEEEEEEEE--CCCEEEEEEEEEEECCC-------CEEEEEEECCEE-EEEEECCEEEEECCCCH
T ss_conf 999999872-07579988799997--79479998889995288-------579999999999-78885378999689863
Q ss_pred HHHHHHCCCEEEEECCCEEEEECCCC-----CCHHHHHHCCCCCCCEEEEEECCCC--CCEEEEEECCEE---CCCCCEE
Q ss_conf 44675229817740886058630354-----3301111002788414899974878--875899988988---1487789
Q gi|254780754|r 164 TAYNFSALGPILPLESRHLLLTPVSP-----FKPRRWHGAILPNDVMIEIQVLEHK--QRPVIATADRLA---IEPVSRI 233 (264)
Q Consensus 164 TAY~lSaGGpIv~p~~~~~~itpI~p-----~~l~~~rplVl~~~~~I~i~i~~~~--~~~~~~~~D~~~---~~~~~~i 233 (264)
||||+||||||++|++++|++||||| |++.+ ||+|+|++++|++++.... .....++.||+. +.++++|
T Consensus 149 TAY~lSAGGPIv~P~~~~~~itPI~P~~~~~~~~~~-rPlVl~~~~~i~i~i~~~~~~~~~~~l~~DG~~~~~~~~~~~I 227 (259)
T PRK00561 149 TALAKSAKGAVIFPRIDVIQIIELNPLLHPNQTTIQ-SPIILPIDTKVEFEIKKAFDHDQFPRFYADGAKLRLGNSDTTI 227 (259)
T ss_pred HHHHHHCCCCEECCCCCEEEEEECCCCCCHHHHCCC-CCEEECCCCEEEEEEECCCCCCCCEEEEECCCEEEECCCCCEE
T ss_conf 776753599563599874999922666620101147-9889789988999980367877515999738256605999889
Q ss_pred EEEECCCCCEEEEECCCCCHHHHHHHHHC
Q ss_conf 99987995189996488889998888751
Q gi|254780754|r 234 NVTQSSDITMRILSDSHRSWSDRILTAQF 262 (264)
Q Consensus 234 ~I~~s~~~~~~li~~~~~~f~~ril~~kF 262 (264)
+|++++++..++++.++++||+|+ ++||
T Consensus 228 ~i~~s~~~~~~~~~l~~~~F~~rL-r~kF 255 (259)
T PRK00561 228 EISLVRSQAMFVASLKTRDFIQKL-KSTF 255 (259)
T ss_pred EEEEECCEEEEEEECCCCCHHHHH-HHHH
T ss_conf 999906826899975899979999-9986
No 10
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=100.00 E-value=0 Score=446.04 Aligned_cols=250 Identities=26% Similarity=0.434 Sum_probs=212.9
Q ss_pred CCEEEEEEECC-CHHHHHHHHHHHHHCCCC---------------------------------CHHHCCEEEEECCCHHH
Q ss_conf 65059999559-989999999999870788---------------------------------84557799998795489
Q gi|254780754|r 4 NIQKIHFKASN-AKKAQEAYDKFVKIYGNS---------------------------------TSEEADVIVVLGGDGFM 49 (264)
Q Consensus 4 ~~~ki~i~~~~-~~~a~~~~~~l~~~~~~~---------------------------------~~~~~Dlii~iGGDGT~ 49 (264)
..+++.++++. .+++.+..+++.+++.+. ..+++|++|++||||||
T Consensus 3 ~~R~V~IV~k~~~~~a~~~a~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dlvi~lGGDGT~ 82 (303)
T PRK03372 3 AERTVLLVAHTGRDEATESARRVVKQLGDAGIGVRVLAAEAADLPDDMRALGVEIEVVDADPDAADGCELVLVLGGDGTF 82 (303)
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCHHH
T ss_conf 88889999708998999999999999997889899970401002444555565422345322335785589997787899
Q ss_pred HHHHHHHHHCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEEEEE---CCCCCCCEEEEEEEEEEEEECC
Q ss_conf 9999997412872994153433201044587899986642012432034434542---1244442015775347997268
Q gi|254780754|r 50 LQSFHQSKEYDKPIYGMNCGSVGFLMNEYCIENLVERLSVAVECTFHPLKMTVFD---YDNSICAENILAINEVSIIRKP 126 (264)
Q Consensus 50 L~a~~~~~~~~~PilGIn~G~lGFL~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~AlNEi~i~r~~ 126 (264)
|+++|.+...++||+|||+|+||||+ +++++++.+.|+++..++|..+++..+. .+++......+||||++|.|+.
T Consensus 83 L~aar~~~~~~iPilGiN~G~lGFLt-~~~~~~~~~~l~~i~~g~~~ie~R~~l~~~v~~~~~~~~~~~ALNdvvi~r~~ 161 (303)
T PRK03372 83 LRAAELARNADVPVLGVNLGHVGFLA-EAEREDLDEAVERVVDRDYRVEERMTLDVTVRVGGEVVYRGWALNEASLEKAP 161 (303)
T ss_pred HHHHHHHCCCCCCEEEEECCCCEEEC-CCCHHHHHHHHHHHHCCCCEEEEEEEEEEEEEECCCEEEEEEEEEEEEEECCC
T ss_conf 99999844479988987259821312-46988999999999808975876204799997188101001230035785288
Q ss_pred CCCCEEEEEEEEEEECCEEEEEEEECCEEEEECCCCHHHHHHHCCCEEEEECCCEEEEECCCCCCHHHHHHCCCCCCCEE
Q ss_conf 76423678889876678765312103507982266504467522981774088605863035433011110027884148
Q gi|254780754|r 127 GQNQLVQAAKLEVKVDDQVRLPELVCDGLVVSTPIGSTAYNFSALGPILPLESRHLLLTPVSPFKPRRWHGAILPNDVMI 206 (264)
Q Consensus 127 ~~~~~~~~~~~~v~id~~~~~~~~~~DGvivSTptGSTAY~lSaGGpIv~p~~~~~~itpI~p~~l~~~rplVl~~~~~I 206 (264)
. .+++++++++||++ +.+|+|||||||||||||||||||||||++|++++|++||||||+|+. ||+|+|++++|
T Consensus 162 ~----~~~i~~~v~id~~~-v~~~~aDGlIvsTPTGSTAYslSAGGPIv~P~~~~~~ltPI~phsL~~-RplVl~~~~~i 235 (303)
T PRK03372 162 R----EGMLEVVLEVDGRP-VSSFGCDGVLVSTPTGSTAYAFSAGGPVVWPELEALLVVPNNAHALFA-RPLVVSPESTV 235 (303)
T ss_pred C----CCEEEEEEEEEEEE-EEEEECCEEEEECCCCHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCC-CCEEECCCCEE
T ss_conf 7----60699999983578-999961659995788625636416995406998759996268775678-98898999869
Q ss_pred EEEECCCCCCEEEEEECCE---ECCCCCEEEEEECCCCCEEEEECCCCCHHHHHHHHHCC
Q ss_conf 9997487887589998898---81487789999879951899964888899988887517
Q gi|254780754|r 207 EIQVLEHKQRPVIATADRL---AIEPVSRINVTQSSDITMRILSDSHRSWSDRILTAQFS 263 (264)
Q Consensus 207 ~i~i~~~~~~~~~~~~D~~---~~~~~~~i~I~~s~~~~~~li~~~~~~f~~ril~~kF~ 263 (264)
+|++.... .++.++.||+ ++.++++|.|++|+ .+++|++.++++||++ ||+||.
T Consensus 236 ~i~v~~~~-~~~~l~~DGq~~~~l~~gd~v~i~~s~-~~~~lir~~~~~f~~~-Lr~Kl~ 292 (303)
T PRK03372 236 AVEILPDT-HDAVLWCDGRREVDLPPGARVEVRRGA-TPVRLARLDSAPFTDR-LVRKFR 292 (303)
T ss_pred EEEECCCC-CCEEEEECCCCCEECCCCCEEEEEECC-CEEEEEEECCCCHHHH-HHHHCC
T ss_conf 99980699-856999879861564999999999889-8089998089897999-999728
No 11
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=100.00 E-value=0 Score=444.30 Aligned_cols=246 Identities=23% Similarity=0.343 Sum_probs=209.1
Q ss_pred EEEEEEECCCHHHHHHHHHHHHHCCC----CCHHHCCEEEEECCCHHHHHHHHHHHHC--CCEEEEECCCCCCCCCCCCC
Q ss_conf 05999955998999999999987078----8845577999987954899999997412--87299415343320104458
Q gi|254780754|r 6 QKIHFKASNAKKAQEAYDKFVKIYGN----STSEEADVIVVLGGDGFMLQSFHQSKEY--DKPIYGMNCGSVGFLMNEYC 79 (264)
Q Consensus 6 ~ki~i~~~~~~~a~~~~~~l~~~~~~----~~~~~~Dlii~iGGDGT~L~a~~~~~~~--~~PilGIn~G~lGFL~~~~~ 79 (264)
||++|+++++++|+.+++++.+++.+ ...+++|++|++|||||||+|+|.+.+. ++|++|||+|+||||+ +++
T Consensus 1 mk~~iv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~Dlvi~iGGDGT~L~a~~~~~~~~~~vPilGIN~G~lGFLt-~~~ 79 (265)
T PRK04885 1 MKVAIISNGDEKSKRVASKLKKYLKDFGFILDEKNPDIVISVGGDGTLLSAFHRYENQLDKVRFVGVHTGHLGFYT-DWR 79 (265)
T ss_pred CEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCHHHHHHHHHHHCCCCCCCEEEEECCCEEEEC-CCC
T ss_conf 9699996969899999999999998769855877899999988739999999986303679758987358525761-478
Q ss_pred HHHHHHHHHHCCCCCCCEEEEEEEEC---CCCCCCEEEEEEEEEEEEECCCCCCEEEEEEEEEEECCEEEEEEEECCEEE
Q ss_conf 78999866420124320344345421---244442015775347997268764236788898766787653121035079
Q gi|254780754|r 80 IENLVERLSVAVECTFHPLKMTVFDY---DNSICAENILAINEVSIIRKPGQNQLVQAAKLEVKVDDQVRLPELVCDGLV 156 (264)
Q Consensus 80 ~~~~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~AlNEi~i~r~~~~~~~~~~~~~~v~id~~~~~~~~~~DGvi 156 (264)
++++.+.++++..+.|..+++..++. .+......++||||++|.|.. +++.++|++||++ +++|+|||+|
T Consensus 80 ~~~~~~~l~~i~~~~~~~~~r~~Le~~v~~~~~~~~~~~ALNEvvi~r~~------~~~~~~v~idg~~-~~~~r~DGlI 152 (265)
T PRK04885 80 DFEVDKLVIALAKDPGQVVSYPLLEVKVTYEDGRKEKYLALNEATIKRIE------GTLVADVYINGEL-FERFRGDGLC 152 (265)
T ss_pred HHHHHHHHHHHHCCCCEEEEEEEEEEEEEECCCCEEEEEEEEEEEEEECC------CEEEEEEEECCEE-EEEEECCEEE
T ss_conf 78999999999829963999602899999689979989987559997068------4599999999999-8999567799
Q ss_pred EECCCCHHHHHHHCCCEEEEECCCEEEEECCCCCCHHHH----HHCCCCCCCEEEEEECCCCCCEEEEEECCE--ECCCC
Q ss_conf 822665044675229817740886058630354330111----100278841489997487887589998898--81487
Q gi|254780754|r 157 VSTPIGSTAYNFSALGPILPLESRHLLLTPVSPFKPRRW----HGAILPNDVMIEIQVLEHKQRPVIATADRL--AIEPV 230 (264)
Q Consensus 157 vSTptGSTAY~lSaGGpIv~p~~~~~~itpI~p~~l~~~----rplVl~~~~~I~i~i~~~~~~~~~~~~D~~--~~~~~ 230 (264)
|||||||||||+||||||++|+++++++|||||++.+.| ||+|+|++++|++++.... .+.++.||. ++.++
T Consensus 153 VSTPTGSTAYslSaGGPIv~P~~~~~~ltPIa~l~~r~~~tl~~plVl~~~~~I~i~~~~~~--~~~l~~Dg~~~~~~~~ 230 (265)
T PRK04885 153 VSTPTGSTAYNKSLGGAVIHPSLEALQLTEIASINNRVFRTLGSPLILPKHHTITIKPVNDD--DYQITVDHLTIKHKNV 230 (265)
T ss_pred EECCCCHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCEEECCCCEEEEEECCCC--CEEEEECCCEECCCCC
T ss_conf 96698516767526994317998819997047778522001588889899988999985789--7699974888406999
Q ss_pred CEEEEEECCCCCEEEEECCCCCHHHHHHHHHCC
Q ss_conf 789999879951899964888899988887517
Q gi|254780754|r 231 SRINVTQSSDITMRILSDSHRSWSDRILTAQFS 263 (264)
Q Consensus 231 ~~i~I~~s~~~~~~li~~~~~~f~~ril~~kF~ 263 (264)
++|+|++|+ .++++++.++++||+|+ |+||-
T Consensus 231 d~I~i~~s~-~~~~lir~~~~~F~~~l-r~kf~ 261 (265)
T PRK04885 231 KSIEYRIAN-EKIRFARFRHFPFWKRV-KDSFI 261 (265)
T ss_pred CEEEEEECC-CEEEEEEECCCCHHHHH-HHHHC
T ss_conf 899999889-56999992899869999-99751
No 12
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=100.00 E-value=0 Score=444.43 Aligned_cols=255 Identities=23% Similarity=0.336 Sum_probs=208.0
Q ss_pred CCCEEEEEEEC-CCHHHHHHHHHHHHHCCCCC----------------------HHHCCEEEEECCCHHHHHHHHHHHHC
Q ss_conf 76505999955-99899999999998707888----------------------45577999987954899999997412
Q gi|254780754|r 3 RNIQKIHFKAS-NAKKAQEAYDKFVKIYGNST----------------------SEEADVIVVLGGDGFMLQSFHQSKEY 59 (264)
Q Consensus 3 ~~~~ki~i~~~-~~~~a~~~~~~l~~~~~~~~----------------------~~~~Dlii~iGGDGT~L~a~~~~~~~ 59 (264)
++|+|+.++++ .+++|++.++++.+++.+.. .+.+|++|++|||||+|+++|.+...
T Consensus 1 m~lk~VlIV~k~~~~~A~~~a~~l~~~L~~rGi~v~~~~~~~~~~~~~~~~~~~~~~~Dlvi~lGGDGT~L~aar~~~~~ 80 (304)
T PRK02645 1 MQLKLVIIAYKAGSPQAKEAAERCAKQLEARGIKVLMGPSGPKDNPYPVFLASAEELPDLAIVLGGDGTVLAAARHLAPH 80 (304)
T ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHCCC
T ss_conf 97459999985899999999999999999888999984443444777620014466888999978688999999985426
Q ss_pred CCEEEEECC-CCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEEEEEC---CCCC-----CCEEEEEEEEEEEEECCCCCC
Q ss_conf 872994153-4332010445878999866420124320344345421---2444-----420157753479972687642
Q gi|254780754|r 60 DKPIYGMNC-GSVGFLMNEYCIENLVERLSVAVECTFHPLKMTVFDY---DNSI-----CAENILAINEVSIIRKPGQNQ 130 (264)
Q Consensus 60 ~~PilGIn~-G~lGFL~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~---~~~~-----~~~~~~AlNEi~i~r~~~~~~ 130 (264)
++||||||+ |+||||+++.+.....+.++++..+.|..+++.++.. .+.. ..+.++||||++|.+......
T Consensus 81 ~iPilGiN~~G~lGFLte~~~~~~~~~~l~~l~~g~~~ie~R~~L~~~v~~~~~~~~~~~~~~~~ALNevvi~~~~~~~~ 160 (304)
T PRK02645 81 DIPILSFNVGGHLGFLTHPRDLLQDESVWDRLLEDRYAIERRMMLQARVFEGGRSNPEPISESYYALNDFYLKPASEDRS 160 (304)
T ss_pred CCCEEEEECCCEEEEECCCCCCCCHHHHHHHHHCCCEEEEEEEEEEEEEEECCCCCCCCCCCCCEEEEEEEEEECCCCCC
T ss_conf 99889982486469716764221178999999769928998778999999589556544433512676799860446654
Q ss_pred EEEEEEEEEEECCEEEEEEEECCEEEEECCCCHHHHHHHCCCEEEEECCCEEEEECCCCCCHHHHHHCCCCCCCEEEEEE
Q ss_conf 36788898766787653121035079822665044675229817740886058630354330111100278841489997
Q gi|254780754|r 131 LVQAAKLEVKVDDQVRLPELVCDGLVVSTPIGSTAYNFSALGPILPLESRHLLLTPVSPFKPRRWHGAILPNDVMIEIQV 210 (264)
Q Consensus 131 ~~~~~~~~v~id~~~~~~~~~~DGvivSTptGSTAY~lSaGGpIv~p~~~~~~itpI~p~~l~~~rplVl~~~~~I~i~i 210 (264)
..+.+++++||++ +.+|+|||||||||||||||||||||||++|.+++|++||||||+++. ||+|+|+++.|+|++
T Consensus 161 --~~~~l~v~idg~~-v~~~~~DGlIVSTPTGSTAYslSAGGPIv~P~~~~i~ltPI~PHsLs~-RPlVlp~~s~I~i~~ 236 (304)
T PRK02645 161 --PTCILELEIDGEV-VDQYKGDGLIVSTPTGSTAYTMAAGGPILHPGIDAIIVTPICPMSLSS-RPIVIPPTSRVVIWP 236 (304)
T ss_pred --CCEEEEEEECCEE-EEEEECCEEEEECCCCHHHHHHHCCCCEECCCCCCEEEEECCCCCCCC-CCEEECCCCEEEEEE
T ss_conf --4179999999999-789842779995687545602316995446887627997668775678-888979998499998
Q ss_pred CCCCCCEEEEEECCE---ECCCCCEEEEEECCCCCEEEEEC-CCCCHHHHHHHHHCC
Q ss_conf 487887589998898---81487789999879951899964-888899988887517
Q gi|254780754|r 211 LEHKQRPVIATADRL---AIEPVSRINVTQSSDITMRILSD-SHRSWSDRILTAQFS 263 (264)
Q Consensus 211 ~~~~~~~~~~~~D~~---~~~~~~~i~I~~s~~~~~~li~~-~~~~f~~ril~~kF~ 263 (264)
.......+.++.||+ ++.++++|.|++|+. ++++++. ++++||+ +||+|..
T Consensus 237 ~~~~~~~~~l~~DGq~~~~l~~gd~v~I~~s~~-~~~~i~~~~~~~ff~-~Lr~KL~ 291 (304)
T PRK02645 237 LGDYDLNIKLWKDGVLATSIWPGQRCVIQKARH-PAKFIILRESPSYYR-TLREKLH 291 (304)
T ss_pred CCCCCCCEEEEECCCCCEECCCCCEEEEEECCC-EEEEEECCCCCCHHH-HHHHHCC
T ss_conf 568987479998899734859999999998897-348998299999999-9875679
No 13
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=100.00 E-value=0 Score=435.36 Aligned_cols=248 Identities=21% Similarity=0.352 Sum_probs=210.4
Q ss_pred CEEEEEEECCCHHHHHHHHHHHHHCCC------CCHHHCCEEEEECCCHHHHHHHHHHH-HCCCEEEEECC-CCCCCCCC
Q ss_conf 505999955998999999999987078------88455779999879548999999974-12872994153-43320104
Q gi|254780754|r 5 IQKIHFKASNAKKAQEAYDKFVKIYGN------STSEEADVIVVLGGDGFMLQSFHQSK-EYDKPIYGMNC-GSVGFLMN 76 (264)
Q Consensus 5 ~~ki~i~~~~~~~a~~~~~~l~~~~~~------~~~~~~Dlii~iGGDGT~L~a~~~~~-~~~~PilGIn~-G~lGFL~~ 76 (264)
.+|.+|++++.+++.+..+.+.+...+ ++++++|++|++|||||||+|+|.+. ..++|++|||. |+||||+
T Consensus 2 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~g~~~vdd~~~aDliI~iGGDGT~L~a~r~~~~~~~~~~lGin~~G~lGFL~- 80 (264)
T PRK03501 2 RRNLFFFYKDDKELVEKVKPLKKIAEENGFTVVDDPKNANIIVSIGGDGTFLQAVRKTGFREDCLYAGISTKDQISFYC- 80 (264)
T ss_pred CCEEEEEECCCHHHHHHHHHHHHHHHHCCCEEECCCCCCCEEEEECCHHHHHHHHHHHHCCCCCEEEEEECCCCCEECC-
T ss_conf 7459999589878999999999999987988848988989999999719999999987344898199997698446646-
Q ss_pred CCCHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCEEEEEEEEEEEEECCCCCCEEEEEEEEEEECCEEEEEEEECCEEE
Q ss_conf 45878999866420124320344345421244442015775347997268764236788898766787653121035079
Q gi|254780754|r 77 EYCIENLVERLSVAVECTFHPLKMTVFDYDNSICAENILAINEVSIIRKPGQNQLVQAAKLEVKVDDQVRLPELVCDGLV 156 (264)
Q Consensus 77 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~AlNEi~i~r~~~~~~~~~~~~~~v~id~~~~~~~~~~DGvi 156 (264)
+++++++.+.+++...++++.+++.++...-. ....++||||++|.+ . ..+++.+++++||++ +++|+|||+|
T Consensus 81 ~~~~~~~~~~l~~i~~g~~~~~~~~ll~~~~~-~~~~~~AlNevvI~~-~----~~~~~~~~v~id~~~-~~~~~~DGlI 153 (264)
T PRK03501 81 DFHIDHVDKMIQAATKEEIEVRKYPTIEVTVD-GSTSFHCLNEFSIRS-S----IIKTFVMDVYIDDLH-FETFRGDGMV 153 (264)
T ss_pred CCCHHHHHHHHHHHHCCCCEEEEEEEEEEEEC-CCCCEEEEEEEEEEC-C----CCCEEEEEEEECCEE-EEEEECCEEE
T ss_conf 78878999999999769966999867999998-974479867789975-8----874799999999999-7988347799
Q ss_pred EECCCCHHHHHHHCCCEEEEECCCEEEEECCCCCCHHHH----HHCCCCCCCEEEEEECCCCCCEEEEEECCE--ECCCC
Q ss_conf 822665044675229817740886058630354330111----100278841489997487887589998898--81487
Q gi|254780754|r 157 VSTPIGSTAYNFSALGPILPLESRHLLLTPVSPFKPRRW----HGAILPNDVMIEIQVLEHKQRPVIATADRL--AIEPV 230 (264)
Q Consensus 157 vSTptGSTAY~lSaGGpIv~p~~~~~~itpI~p~~l~~~----rplVl~~~~~I~i~i~~~~~~~~~~~~D~~--~~~~~ 230 (264)
|||||||||||+|||||||+|++++|++||||||+++.| ||+|+|++++|++++.+.....+.+.+||+ ++.++
T Consensus 154 VSTPtGSTAYslSAGGPIv~P~l~~~~itPI~pl~~~~~~~l~rPlVl~~~s~I~i~v~~~~~~~~~v~~Dg~~~~l~~~ 233 (264)
T PRK03501 154 VSTPTGSTAYNKSVRGAVVDPLIPCFQVSELASLNNNTYRTLGSPFILSHERKLTLKIVQDGNDYPIIGMDNEALSIKHV 233 (264)
T ss_pred EECCCCHHHHHHHCCCCEECCCCCEEEEEEECCCCCCCCCCCCCCEEECCCCEEEEEEECCCCCCEEEEECCEEEECCCC
T ss_conf 96798647857426995507997719998305568653202578889899988999990489864799879979874999
Q ss_pred CEEEEEECCCCCEEEEECCCCCHHHHHHHHHC
Q ss_conf 78999987995189996488889998888751
Q gi|254780754|r 231 SRINVTQSSDITMRILSDSHRSWSDRILTAQF 262 (264)
Q Consensus 231 ~~i~I~~s~~~~~~li~~~~~~f~~ril~~kF 262 (264)
++|.|++|+ ..++++++++++||+++ |+||
T Consensus 234 d~I~I~~S~-~~v~li~~~~~~ff~~L-R~Kf 263 (264)
T PRK03501 234 EKVDVRLSD-KQIKTVKLKNNSFWEKV-KRTF 263 (264)
T ss_pred CEEEEEECC-CEEEEEECCCCCHHHHH-HHHH
T ss_conf 899999999-67999981999979999-9863
No 14
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=100.00 E-value=0 Score=435.03 Aligned_cols=245 Identities=25% Similarity=0.347 Sum_probs=204.9
Q ss_pred EEEEEEEC-CCHHHHHHHHHHHHHCCCCCH-------------------------HHCCEEEEECCCHHHHHHHHHHHHC
Q ss_conf 05999955-998999999999987078884-------------------------5577999987954899999997412
Q gi|254780754|r 6 QKIHFKAS-NAKKAQEAYDKFVKIYGNSTS-------------------------EEADVIVVLGGDGFMLQSFHQSKEY 59 (264)
Q Consensus 6 ~ki~i~~~-~~~~a~~~~~~l~~~~~~~~~-------------------------~~~Dlii~iGGDGT~L~a~~~~~~~ 59 (264)
||++++++ ..+++.+.++++.+++.+... .++|++|++|||||+|+++|. ...
T Consensus 1 MKigIv~n~~k~~a~~~a~~l~~~L~~~g~~v~ld~~~~~~~~~~~~~~~~~~~~~~~Dlvi~lGGDGT~L~a~~~-~~~ 79 (278)
T PRK03708 1 MRFGIVARRDKEEALKLAYRVYDFLKVSGYEVVVDSDTYEHLPQFSEEDVLPLEEFDVDFILAIGGDGTILRIEHK-TKK 79 (278)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHH-CCC
T ss_conf 9999992189989999999999999988998999747865666555567675435787899998786899999996-478
Q ss_pred CCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCEEEEEEEEEEEEECCCCCCEEEEEEEEE
Q ss_conf 87299415343320104458789998664201243203443454212444420157753479972687642367888987
Q gi|254780754|r 60 DKPIYGMNCGSVGFLMNEYCIENLVERLSVAVECTFHPLKMTVFDYDNSICAENILAINEVSIIRKPGQNQLVQAAKLEV 139 (264)
Q Consensus 60 ~~PilGIn~G~lGFL~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~AlNEi~i~r~~~~~~~~~~~~~~v 139 (264)
++|+||||+|+||||+ +++++++.+.|++...++|..+++..+...-........||||++|.|+.. .+++++++
T Consensus 80 ~iPilGiN~G~lGFLt-~~~~~~~~~~l~~i~~g~y~ie~r~~l~~~~~~~~~~~~AlNdvvi~~~~~----~~~~~~~v 154 (278)
T PRK03708 80 EIPILSINMGTLGFLT-EVEPEDTFFALSRLLEGEYYIDERIKLRTYINGENRVPDALNEVAILTGIP----GKIIHLRY 154 (278)
T ss_pred CCCEEEEECCCCCCCC-CCCHHHHHHHHHHHHCCCCEEEEEEEEEEEECCCEEEEEEECEEEEECCCC----CCEEEEEE
T ss_conf 9988988358753035-568789999999997289747731379999989474431775399973898----84599999
Q ss_pred EECCEEEEEEEECCEEEEECCCCHHHHHHHCCCEEEEECCCEEEEECCCCCCHHHHHHCCCCCCCEEEEEECCCCCCEEE
Q ss_conf 66787653121035079822665044675229817740886058630354330111100278841489997487887589
Q gi|254780754|r 140 KVDDQVRLPELVCDGLVVSTPIGSTAYNFSALGPILPLESRHLLLTPVSPFKPRRWHGAILPNDVMIEIQVLEHKQRPVI 219 (264)
Q Consensus 140 ~id~~~~~~~~~~DGvivSTptGSTAY~lSaGGpIv~p~~~~~~itpI~p~~l~~~rplVl~~~~~I~i~i~~~~~~~~~ 219 (264)
++||++ +.+|+|||+|||||||||||||||||||++|+++++++||||||++++ ||+|+|++++|+|++.... +.+.
T Consensus 155 ~id~~~-~~~~~~DGlIvsTpTGSTAYslSAGGPIv~P~~~~~~itPI~phsL~~-RplVv~~~~~I~i~~~~~~-~~~~ 231 (278)
T PRK03708 155 YVDGGL-ADEVRADGLIISTPTGSTGYAMSAGGPFVDPRLDVILIAPLCPFKLSS-RPMVVPGSSRIDVKFLAKG-REII 231 (278)
T ss_pred EECCEE-EEEEECCEEEEECCCCHHHHHHHCCCCEECCCCCEEEEECCCCCCCCC-CCEEECCCCEEEEEEECCC-CCEE
T ss_conf 988778-789974679995787456745526995208998749996667776778-9889899987999991689-8479
Q ss_pred EEECCE---ECCCCCEEEEEECCCCCEEEEECCCCCHHHHHHHHHC
Q ss_conf 998898---8148778999987995189996488889998888751
Q gi|254780754|r 220 ATADRL---AIEPVSRINVTQSSDITMRILSDSHRSWSDRILTAQF 262 (264)
Q Consensus 220 ~~~D~~---~~~~~~~i~I~~s~~~~~~li~~~~~~f~~ril~~kF 262 (264)
++.||+ ++.++++|.|++|+ .++++++.++ +||+| +++|.
T Consensus 232 l~~DG~~~~~l~~gd~v~I~~s~-~~~~lir~~~-~~y~~-l~~Kl 274 (278)
T PRK03708 232 LAIDGQYYEELSPETEITIVKSP-RKTKFVRFTK-EIYPK-YTMKI 274 (278)
T ss_pred EEECCCCEEECCCCCEEEEEECC-CEEEEEEECC-CCHHH-HHHHH
T ss_conf 99879730673999999999889-7489999789-75589-98765
No 15
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=100.00 E-value=0 Score=428.02 Aligned_cols=242 Identities=22% Similarity=0.399 Sum_probs=204.6
Q ss_pred EEEEEEEC-CCHHHHHHHHHHHHHCCCC--------------------CHHHCCEEEEECCCHHHHHHHHHHHHCCCEEE
Q ss_conf 05999955-9989999999999870788--------------------84557799998795489999999741287299
Q gi|254780754|r 6 QKIHFKAS-NAKKAQEAYDKFVKIYGNS--------------------TSEEADVIVVLGGDGFMLQSFHQSKEYDKPIY 64 (264)
Q Consensus 6 ~ki~i~~~-~~~~a~~~~~~l~~~~~~~--------------------~~~~~Dlii~iGGDGT~L~a~~~~~~~~~Pil 64 (264)
||++++++ +++++.++++++.+++... ..-++|++|++|||||+|+++|.+ ++||+
T Consensus 1 MKi~iv~~~~~~~a~~~a~~l~~~L~~~~~v~~d~~~a~~l~~~~~~~~e~~~Dlvi~iGGDGTlLr~~~~~---~~Pil 77 (272)
T PRK01185 1 MKVAFVIRKDCKRCANIARSIISLLPSDWEIIYDKEAAKFLKKPGLDINEISADIIIVIGGDGTVLRTLQFA---KGPVL 77 (272)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEEHHHHHHCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHC---CCCEE
T ss_conf 989999978998999999999999966991998568888709999985568988999977839999999877---99999
Q ss_pred EECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCEEEEEEEEEEEEECCCCCCEEEEEEEEEEECCE
Q ss_conf 41534332010445878999866420124320344345421244442015775347997268764236788898766787
Q gi|254780754|r 65 GMNCGSVGFLMNEYCIENLVERLSVAVECTFHPLKMTVFDYDNSICAENILAINEVSIIRKPGQNQLVQAAKLEVKVDDQ 144 (264)
Q Consensus 65 GIn~G~lGFL~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~AlNEi~i~r~~~~~~~~~~~~~~v~id~~ 144 (264)
|||+|+||||+ +++++++.+.+++...+.|..+++..+..... ..+...|+||++|.++. ..+++++++++||+
T Consensus 78 GIN~G~lGFLt-~~~~~~~~~~l~~~~~g~~~i~~r~~L~~~~~-~~~~~~alNevvi~~~~----~~~~~~~~v~idg~ 151 (272)
T PRK01185 78 GINMGGLGFLT-EIEIDEVGSSILKLIRGEYTIIEYMKLKVYIN-GVRSEDCTNEAVVHTDR----IARIRQFKIYEDGH 151 (272)
T ss_pred EECCCCCCCCC-CCCHHHHHHHHHHHHHCCCEEEEEEEEEEEEC-CEEECCCEEEEEEECCC----CCEEEEEEEEECCE
T ss_conf 98178543688-48868999999999818972756128999998-74601043589984487----02126999998884
Q ss_pred EEEEEEECCEEEEECCCCHHHHHHHCCCEEEEECCCEEEEECCCCCCHHHHHHCCCCCCCEEEEEECCCCCCEEEEEECC
Q ss_conf 65312103507982266504467522981774088605863035433011110027884148999748788758999889
Q gi|254780754|r 145 VRLPELVCDGLVVSTPIGSTAYNFSALGPILPLESRHLLLTPVSPFKPRRWHGAILPNDVMIEIQVLEHKQRPVIATADR 224 (264)
Q Consensus 145 ~~~~~~~~DGvivSTptGSTAY~lSaGGpIv~p~~~~~~itpI~p~~l~~~rplVl~~~~~I~i~i~~~~~~~~~~~~D~ 224 (264)
+ +++|+|||+|||||||||||||||||||++|++++|++||||||+++. ||+|+|++++|+|++....+ .+.++.||
T Consensus 152 ~-~~~~~~DGlIvsTPTGSTAYslSaGGPIv~P~~~~i~ltPI~Ph~l~~-RPlVl~~~s~I~i~v~~~~~-~~~l~~DG 228 (272)
T PRK01185 152 F-LETTKSDGVIVATPIGSSSYSSSAGGPLLLPTLNGMVISYLAPYSSRS-KPVVVSSKSTVEIKIAGRDQ-RSLLILDG 228 (272)
T ss_pred E-EEEEECCEEEEECCCCHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCC-CCEEECCCCEEEEEECCCCC-CEEEEECC
T ss_conf 5-679964669996788437889766994227998849998167776789-98898999869999915898-67999918
Q ss_pred E---ECCCCCEEEEEECCCCCEEEEECCCCCHHHHHHHHHC
Q ss_conf 8---8148778999987995189996488889998888751
Q gi|254780754|r 225 L---AIEPVSRINVTQSSDITMRILSDSHRSWSDRILTAQF 262 (264)
Q Consensus 225 ~---~~~~~~~i~I~~s~~~~~~li~~~~~~f~~ril~~kF 262 (264)
+ ++.++++|+|++|+ .++++++.++ +||+| +|+|+
T Consensus 229 ~~~~~l~~~d~I~I~~s~-~~~~li~~~~-~fy~~-Lr~KL 266 (272)
T PRK01185 229 QIEYKLSSGDTVNISVSE-NGARFISFRE-SFYDR-LRDKV 266 (272)
T ss_pred CCCEECCCCCEEEEEECC-CEEEEEECCC-CHHHH-HHHHH
T ss_conf 851575999899999889-7589983798-88999-99997
No 16
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=100.00 E-value=0 Score=430.90 Aligned_cols=222 Identities=26% Similarity=0.411 Sum_probs=190.9
Q ss_pred CHHHCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCC-CCCCCEEEEEEEEC---CCC
Q ss_conf 84557799998795489999999741287299415343320104458789998664201-24320344345421---244
Q gi|254780754|r 33 TSEEADVIVVLGGDGFMLQSFHQSKEYDKPIYGMNCGSVGFLMNEYCIENLVERLSVAV-ECTFHPLKMTVFDY---DNS 108 (264)
Q Consensus 33 ~~~~~Dlii~iGGDGT~L~a~~~~~~~~~PilGIn~G~lGFL~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~---~~~ 108 (264)
..+.+|++|++|||||||+++|.+...++||+|||+|+||||+ +++++++.+.+.... .+++..+++..+.. +++
T Consensus 39 ~~~~~Dlii~iGGDGT~L~a~r~~~~~~iPilGiN~G~lGFL~-~~~~~~~~~~l~~~l~~g~~~i~~r~~L~~~v~~~~ 117 (272)
T PRK02231 39 IGQRAQLAIVIGGDGNMLGRARVLAKYDIPLIGINRGNLGFLT-DIDPKNAYSQLEACLERGEFFVEERFLLEAKIERAG 117 (272)
T ss_pred HCCCCCEEEEECCCHHHHHHHHHHHCCCCCEEEECCCCCEEEE-CCCHHHHHHHHHHHHHCCCCEEEEEEEEEEEEECCC
T ss_conf 7017789999787589999999860059978965378862742-258588999999999739942311016999995399
Q ss_pred CCCEEEEEEEEEEEEECCCCCCEEEEEEEEEEECCEEEEEEEECCEEEEECCCCHHHHHHHCCCEEEEECCCEEEEECCC
Q ss_conf 44201577534799726876423678889876678765312103507982266504467522981774088605863035
Q gi|254780754|r 109 ICAENILAINEVSIIRKPGQNQLVQAAKLEVKVDDQVRLPELVCDGLVVSTPIGSTAYNFSALGPILPLESRHLLLTPVS 188 (264)
Q Consensus 109 ~~~~~~~AlNEi~i~r~~~~~~~~~~~~~~v~id~~~~~~~~~~DGvivSTptGSTAY~lSaGGpIv~p~~~~~~itpI~ 188 (264)
.....++||||++|.|+. ..+++++++++||++ +.+|+|||+||||||||||||+||||||++|+++++++||||
T Consensus 118 ~~~~~~~AlNevvi~~~~----~~~~i~~~v~id~~~-~~~~~~DGlIVSTPTGSTAYslSAGGPIv~P~~~~~~itPI~ 192 (272)
T PRK02231 118 EIVATSNAVNEAVIHPAK----IAHMIDFHVYINDKF-AFSQRSDGLIVSTPTGSTAYSLSAGGPILTPQLNAIALVPMF 192 (272)
T ss_pred CEECCCCEEEEEEEECCC----CCEEEEEEEEECCEE-EEEEECCEEEEECCCCHHHHHHHCCCCEECCCCCCEEEEECC
T ss_conf 376330101048995388----523799999984468-899846879995787456745536995327998728998677
Q ss_pred CCCHHHHHHCCCCCCCEEEEEECCCCCCEEEEEECCE---ECCCCCEEEEEECCCCCEEEEECCCCCHHHHHHHHHCC
Q ss_conf 4330111100278841489997487887589998898---81487789999879951899964888899988887517
Q gi|254780754|r 189 PFKPRRWHGAILPNDVMIEIQVLEHKQRPVIATADRL---AIEPVSRINVTQSSDITMRILSDSHRSWSDRILTAQFS 263 (264)
Q Consensus 189 p~~l~~~rplVl~~~~~I~i~i~~~~~~~~~~~~D~~---~~~~~~~i~I~~s~~~~~~li~~~~~~f~~ril~~kF~ 263 (264)
||++++ ||+|+|++++|++++.+.....+.++.||+ ++.++++|.|++|+ .++++++.++++||+ .|++|+.
T Consensus 193 PHsLs~-RPlVlp~~~~I~i~~~~~~~~~~~i~~DGq~~~~l~~~d~i~I~~s~-~~~~li~~~~~~ff~-~Lr~KL~ 267 (272)
T PRK02231 193 PHTLSS-RPLVVDGDSKISIRFAEYNTSQLEVGCDSQIALPFTPDDVVHIQKSP-HKLRLLHLKNYNYYN-VLSSKLG 267 (272)
T ss_pred CCCCCC-CCEEECCCCEEEEEECCCCCCCEEEEECCCCEEECCCCCEEEEEECC-CEEEEEECCCCCHHH-HHHHHCC
T ss_conf 764578-98897999879999857898868999829803771999999999999-759999819999899-9987779
No 17
>COG0061 nadF NAD kinase [Coenzyme metabolism]
Probab=100.00 E-value=0 Score=407.87 Aligned_cols=220 Identities=32% Similarity=0.528 Sum_probs=190.2
Q ss_pred CHHHCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEEEEE---CCCCC
Q ss_conf 845577999987954899999997412872994153433201044587899986642012432034434542---12444
Q gi|254780754|r 33 TSEEADVIVVLGGDGFMLQSFHQSKEYDKPIYGMNCGSVGFLMNEYCIENLVERLSVAVECTFHPLKMTVFD---YDNSI 109 (264)
Q Consensus 33 ~~~~~Dlii~iGGDGT~L~a~~~~~~~~~PilGIn~G~lGFL~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~---~~~~~ 109 (264)
..+.+|+++++|||||+|+++|.+...++||+|||+|+||||| ++..+++.+.++....+.+..+++..++ ..+.
T Consensus 52 ~~~~~d~ivvlGGDGtlL~~~~~~~~~~~pilgin~G~lGFLt-~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~v~~~~- 129 (281)
T COG0061 52 DEEKADLIVVLGGDGTLLRAARLLARLDIPVLGINLGHLGFLT-DFEPDELEKALDALLEGEYRIEERLLLEVSVNRGD- 129 (281)
T ss_pred CCCCCEEEEEECCCHHHHHHHHHHCCCCCCEEEEECCCCCCCC-CCCHHHHHHHHHHHHCCCCEEEEEEEEEEEEECCC-
T ss_conf 5677649999899689999999745569978999889830036-76878999999998647624776568999996387-
Q ss_pred CCEEEEEEEEEEEEECCCCCCEEEEEEEEEEECCEEEEEEEECCEEEEECCCCHHHHHHHCCCEEEEECCCEEEEECCCC
Q ss_conf 42015775347997268764236788898766787653121035079822665044675229817740886058630354
Q gi|254780754|r 110 CAENILAINEVSIIRKPGQNQLVQAAKLEVKVDDQVRLPELVCDGLVVSTPIGSTAYNFSALGPILPLESRHLLLTPVSP 189 (264)
Q Consensus 110 ~~~~~~AlNEi~i~r~~~~~~~~~~~~~~v~id~~~~~~~~~~DGvivSTptGSTAY~lSaGGpIv~p~~~~~~itpI~p 189 (264)
....+||||++|.|+.... +..+++++||++ +++++||||||||||||||||+||||||++|++++|+||||||
T Consensus 130 -~~~~~aLNEv~I~~~~~~~----~~~~~v~id~~~-~~~~r~DGliVsTPTGSTAY~lSAGGPIv~P~l~ai~ltpi~p 203 (281)
T COG0061 130 -IRRALALNEVVIHRGSPAK----MIEFEVYIDDEF-FESFRGDGLIVSTPTGSTAYNLSAGGPILHPGLDAIQLTPICP 203 (281)
T ss_pred -CEEEEEEEEEEEECCCCCC----EEEEEEEECCEE-EEEEECCEEEEECCCCHHHHHHHCCCCCCCCCCCEEEEEECCC
T ss_conf -4068888879996488764----489999999999-9999868999918986777863079960699988699984577
Q ss_pred CCHHHHHHCCCCCCCEEEEEECCCCCCEEEEEECCEE---CCCCCEEEEEECCCCCEEEEECCCC-CHHHHHHHHHCC
Q ss_conf 3301111002788414899974878875899988988---1487789999879951899964888-899988887517
Q gi|254780754|r 190 FKPRRWHGAILPNDVMIEIQVLEHKQRPVIATADRLA---IEPVSRINVTQSSDITMRILSDSHR-SWSDRILTAQFS 263 (264)
Q Consensus 190 ~~l~~~rplVl~~~~~I~i~i~~~~~~~~~~~~D~~~---~~~~~~i~I~~s~~~~~~li~~~~~-~f~~ril~~kF~ 263 (264)
|+++ |||+|+|+++.|++++.....+++.+..||++ +.++++|+|++|. .++++++...+ +|++|+ ++||.
T Consensus 204 ~~l~-~Rpiv~p~~~~v~i~~~~~~~~~~~~~~Dg~~~~~~~~~~~i~i~~s~-~~~~~~~~~~~~~~~~~l-~~~~~ 278 (281)
T COG0061 204 HSLS-FRPLVLPSSSTVRIEVLLTPKRDAVVVVDGQELLLINPGDRIEIRRSP-YKARFIRLRSYDDFFERL-RSKLI 278 (281)
T ss_pred CCCC-CCCEEECCCCEEEEEECCCCCCCEEEEECCCEEEECCCCCEEEEEECC-CEEEEECCCCCHHHHHHH-HHHHC
T ss_conf 7877-887798997469999845776560999759765715998489999857-547880467722599999-99764
No 18
>pfam01513 NAD_kinase ATP-NAD kinase. Members of this family include ATP-NAD kinases EC:2.7.1.23, which catalyses the phosphorylation of NAD to NADP utilising ATP and other nucleoside triphosphates as well as inorganic polyphosphate as a source of phosphorus. Also includes NADH kinases EC:2.7.1.86.
Probab=100.00 E-value=0 Score=394.10 Aligned_cols=232 Identities=30% Similarity=0.456 Sum_probs=197.2
Q ss_pred EEEEEECCC-HHHHHHHHHHHHHCCCC----CHHHCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCHH
Q ss_conf 599995599-89999999999870788----8455779999879548999999974128729941534332010445878
Q gi|254780754|r 7 KIHFKASNA-KKAQEAYDKFVKIYGNS----TSEEADVIVVLGGDGFMLQSFHQSKEYDKPIYGMNCGSVGFLMNEYCIE 81 (264)
Q Consensus 7 ki~i~~~~~-~~a~~~~~~l~~~~~~~----~~~~~Dlii~iGGDGT~L~a~~~~~~~~~PilGIn~G~lGFL~~~~~~~ 81 (264)
|++++.+.. +++.+.++++.+++.+. ..+++|+++++|||||||+++|.+.+.++|++|||+|++|||+ +++++
T Consensus 1 kvgiv~n~~~~~a~~~~~~l~~~L~~~~~~~~~~~~Dlii~lGGDGT~L~~~~~~~~~~~PilGin~G~lGFL~-~~~~~ 79 (243)
T pfam01513 1 KVGIIVNPDKVEAEERASELQRLLLDATREMVEEGVDLIVVLGGDGTALDAARLLGDHDIPILGINTGTLGFLT-EFSPE 79 (243)
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHCCHHHHCCCCCEEEEECCCHHHHHHHHHHCCCCCCEEEEECCCCCEEC-CCCHH
T ss_conf 98999879967899999999999886472130559889999898789999999845679958998569763100-36988
Q ss_pred HHHHHHHHCCCCCCCEEEEEEEEC---CCCCCCEEEEEEEEEEEEECCCCCCEEEEEEEEEEECCEEEEEEEECCEEEEE
Q ss_conf 999866420124320344345421---24444201577534799726876423678889876678765312103507982
Q gi|254780754|r 82 NLVERLSVAVECTFHPLKMTVFDY---DNSICAENILAINEVSIIRKPGQNQLVQAAKLEVKVDDQVRLPELVCDGLVVS 158 (264)
Q Consensus 82 ~~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~AlNEi~i~r~~~~~~~~~~~~~~v~id~~~~~~~~~~DGvivS 158 (264)
++.+.+.+...+++..+++..+.. +++......+||||+++.|+.. .+++++++++||++ +.+|+|||+|||
T Consensus 80 ~~~~~l~~i~~~~~~i~~r~~l~~~v~~~~~~~~~~~alNev~i~~~~~----~~~~~~~v~i~~~~-~~~~~~DGlivs 154 (243)
T pfam01513 80 EAAKLLDALLEGEYKIEKRELLDVIVRRSKRLLIVDLALNEVVIIGGPA----STMIEIEVYIDGEL-LESIRGDGLIVS 154 (243)
T ss_pred HHHHHHHHHHCCCCEEEEEEEEEEEEECCCCEEEEEEEEEEEEEECCCC----CCEEEEEEEEEEEE-EEEEECCEEEEE
T ss_conf 9999999987179417023218999987997087567999899964888----52179999970078-899614569996
Q ss_pred CCCCHHHHHHHCCCEEEEECCCEEEEECCCCCCHHHHHHCCCCCCCEEEEEECCCCCCEEEEEECCE---ECCCCCEEEE
Q ss_conf 2665044675229817740886058630354330111100278841489997487887589998898---8148778999
Q gi|254780754|r 159 TPIGSTAYNFSALGPILPLESRHLLLTPVSPFKPRRWHGAILPNDVMIEIQVLEHKQRPVIATADRL---AIEPVSRINV 235 (264)
Q Consensus 159 TptGSTAY~lSaGGpIv~p~~~~~~itpI~p~~l~~~rplVl~~~~~I~i~i~~~~~~~~~~~~D~~---~~~~~~~i~I 235 (264)
|||||||||+||||||++|++++|++||||||++.. ||+|+|++++|++++... ..+.++.||+ +++++++|.|
T Consensus 155 TptGSTaY~lSaGGpiv~p~~~~~~itpi~ph~l~~-rplVlp~~~~i~i~~~~~--~~~~l~~DG~~~~~l~~~d~i~i 231 (243)
T pfam01513 155 TPTGSTAYSLSAGGPIISPGVLAILLTPICPHSLSS-RPIVVPSSSKLRIRLDSK--EEALLVLDGQRELDLKPGDEVTV 231 (243)
T ss_pred CCCCHHHHHHHCCCCEECCCCCEEEEEECCCCCCCC-CCEEECCCCEEEEEECCC--CCEEEEEECCCCEECCCCCEEEE
T ss_conf 798567888527996267877517987657654689-988989998899998789--98899990897557399999999
Q ss_pred EECCCCCEEEEEC
Q ss_conf 9879951899964
Q gi|254780754|r 236 TQSSDITMRILSD 248 (264)
Q Consensus 236 ~~s~~~~~~li~~ 248 (264)
++|++ ++++++.
T Consensus 232 ~~s~~-~~~lirl 243 (243)
T pfam01513 232 RKSPY-KPKFVRV 243 (243)
T ss_pred EECCC-EEEEEEC
T ss_conf 99898-0499979
No 19
>KOG2178 consensus
Probab=100.00 E-value=0 Score=369.79 Aligned_cols=220 Identities=25% Similarity=0.417 Sum_probs=188.7
Q ss_pred HHCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCC---EEEEEEEECCCCCCC
Q ss_conf 55779999879548999999974128729941534332010445878999866420124320---344345421244442
Q gi|254780754|r 35 EEADVIVVLGGDGFMLQSFHQSKEYDKPIYGMNCGSVGFLMNEYCIENLVERLSVAVECTFH---PLKMTVFDYDNSICA 111 (264)
Q Consensus 35 ~~~Dlii~iGGDGT~L~a~~~~~~~~~PilGIn~G~lGFL~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~~ 111 (264)
+..|+||++|||||+|+|++.|+..-+||+.+++|+||||+ +|+.+++.+.|..+.++... |+++.+..++.....
T Consensus 167 ~~~D~iItLGGDGTvL~aS~LFq~~VPPV~sFslGslGFLt-pf~f~~f~~~l~~v~~~~~~v~lR~RL~C~i~rk~~~~ 245 (409)
T KOG2178 167 NRFDLIITLGGDGTVLYASSLFQRSVPPVLSFSLGSLGFLT-PFPFANFQEQLARVLNGRAAVNLRMRLRCSLKRKDLAE 245 (409)
T ss_pred CCEEEEEEECCCCCEEEEHHHHCCCCCCEEEEECCCCCCCC-CCCHHHHHHHHHHHHCCCCEEEEEEEEEEEEEEECCCC
T ss_conf 12569999668864887546446789975886058732455-66478999999999637634766555799999703666
Q ss_pred -----EEEEEEEEEEEEECCCCCCEEEEEEEEEEECCEEEEEEEECCEEEEECCCCHHHHHHHCCCEEEEECCCEEEEEC
Q ss_conf -----015775347997268764236788898766787653121035079822665044675229817740886058630
Q gi|254780754|r 112 -----ENILAINEVSIIRKPGQNQLVQAAKLEVKVDDQVRLPELVCDGLVVSTPIGSTAYNFSALGPILPLESRHLLLTP 186 (264)
Q Consensus 112 -----~~~~AlNEi~i~r~~~~~~~~~~~~~~v~id~~~~~~~~~~DGvivSTptGSTAY~lSaGGpIv~p~~~~~~itp 186 (264)
..+++|||++|.|++.+. +..+++|+||++ +++.+|||||||||||||||++|||||++||..+||.+||
T Consensus 246 ~~~~~~~~~vLNEvvIdRGpsP~----ls~l~ly~d~~~-iT~vq~DGliVaTPTGSTAYS~sAGGSlvhP~vpAIlvTP 320 (409)
T KOG2178 246 KTHAASSHYVLNEVVIDRGPSPF----LSNLDLYVDDKL-ITKVQGDGLIVATPTGSTAYSASAGGSLVHPSVPAILVTP 320 (409)
T ss_pred CCCCCCEEEEEEEEEECCCCCCH----HCCEEEEECCCE-EEEEECCEEEEECCCCHHHHHHHCCCCEECCCCCEEEEEC
T ss_conf 66442137874357873689812----204157863707-9999616699966886156476449954469977489824
Q ss_pred CCCCCHHHHHHCCCCCCCEEEEEECCCCCCEEEEEECCE---ECCCCCEEEEEECCCCCEEEEECCC--CCHHHHHHHHH
Q ss_conf 354330111100278841489997487887589998898---8148778999987995189996488--88999888875
Q gi|254780754|r 187 VSPFKPRRWHGAILPNDVMIEIQVLEHKQRPVIATADRL---AIEPVSRINVTQSSDITMRILSDSH--RSWSDRILTAQ 261 (264)
Q Consensus 187 I~p~~l~~~rplVl~~~~~I~i~i~~~~~~~~~~~~D~~---~~~~~~~i~I~~s~~~~~~li~~~~--~~f~~ril~~k 261 (264)
||||+| +|||+|+|+..+++|++....+..+.+..||. |+..||.|.|..|. +++--+...+ .+|++ .+.++
T Consensus 321 ICPhSL-SFRPIIlPds~~L~I~i~~dsR~~awvSfDG~~r~El~~GD~i~I~tS~-ypfPti~~s~~~~dWf~-sl~~~ 397 (409)
T KOG2178 321 ICPHSL-SFRPIILPDSSELRVEVPLDSRSTAWVSFDGRPRQELSLGDYIDITTSR-YPFPTIISSDEESDWFE-SLARL 397 (409)
T ss_pred CCCCCC-CCCCEECCCCCEEEEEECCCCCCCCEEEECCCCHHHCCCCCEEEEEECC-CCCCEEECCCCHHHHHH-HHHHH
T ss_conf 688765-6566672686679999576546560587658505443688559998646-77760424752436999-99987
Q ss_pred CC
Q ss_conf 17
Q gi|254780754|r 262 FS 263 (264)
Q Consensus 262 F~ 263 (264)
++
T Consensus 398 L~ 399 (409)
T KOG2178 398 LN 399 (409)
T ss_pred CC
T ss_conf 07
No 20
>KOG4180 consensus
Probab=99.81 E-value=3e-20 Score=147.98 Aligned_cols=133 Identities=32% Similarity=0.439 Sum_probs=98.3
Q ss_pred CHHHCCEEEEECCCHHHHHHHHHHHHCCCEEEEECC---CCCCCCC--CCCCHHHHHHHHHHCCCCCCC---EEE--EEE
Q ss_conf 845577999987954899999997412872994153---4332010--445878999866420124320---344--345
Q gi|254780754|r 33 TSEEADVIVVLGGDGFMLQSFHQSKEYDKPIYGMNC---GSVGFLM--NEYCIENLVERLSVAVECTFH---PLK--MTV 102 (264)
Q Consensus 33 ~~~~~Dlii~iGGDGT~L~a~~~~~~~~~PilGIn~---G~lGFL~--~~~~~~~~~~~l~~~~~~~~~---~~~--~~~ 102 (264)
+..++|+||+.|||||||.|++++.+..+||+|||+ |+-|.|+ ..+. ++..++|.++..+.+. +.. ..+
T Consensus 102 ~i~waD~VisvGGDGTfL~Aasrv~~~~~PViGvNtDP~~Seg~lcL~~~~~-~n~~~al~k~~sgnF~wv~r~rir~tv 180 (395)
T KOG4180 102 PIRWADMVISVGGDGTFLLAASRVIDDSKPVIGVNTDPTGSEGHLCLPDKYP-SNPAGALCKLTSGNFEWVLRQRIRGTV 180 (395)
T ss_pred CCCHHHEEEEECCCCCEEEHHHHHHCCCCCEEEECCCCCCCCCEEECCCCCC-CCCHHHHHHHHHCCHHHHHHHEEEEEE
T ss_conf 5762317997168631321001222168844553489876754376454488-772778999871337976321468999
Q ss_pred EE---------------C---C--------------C--CCCCEEEEEEEEEEEEECCCCCCEEEEEEEEEEECCEEEEE
Q ss_conf 42---------------1---2--------------4--44420157753479972687642367888987667876531
Q gi|254780754|r 103 FD---------------Y---D--------------N--SICAENILAINEVSIIRKPGQNQLVQAAKLEVKVDDQVRLP 148 (264)
Q Consensus 103 ~~---------------~---~--------------~--~~~~~~~~AlNEi~i~r~~~~~~~~~~~~~~v~id~~~~~~ 148 (264)
.- . . . ......++|||||+| +...++++.+|++.||+.- ..
T Consensus 181 ~g~~gip~p~dlh~~q~s~nqr~sa~~i~~~~~s~sea~~~~~LpvlALNEVfI----gE~lsarVS~y~i~idd~~-~~ 255 (395)
T KOG4180 181 VGDDGIPDPIDLHDQQLSDNQRSSAKEIEETLLSHSEAVEIVALPVLALNEVFI----GESLSARVSYYEISIDDKD-GV 255 (395)
T ss_pred ECCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHCCEEE----CCCCCCCCEEEEEEECCCC-CC
T ss_conf 557888773046665522022341566788887544331320022333120331----5764200006899863763-10
Q ss_pred EEECCEEEEECCCCHHHHHHHCC
Q ss_conf 21035079822665044675229
Q gi|254780754|r 149 ELVCDGLVVSTPIGSTAYNFSAL 171 (264)
Q Consensus 149 ~~~~DGvivSTptGSTAY~lSaG 171 (264)
+.++.|+++||.||||+|+++..
T Consensus 256 KqKssgl~vctgTGstsw~~~iN 278 (395)
T KOG4180 256 KQKSSGLVVCTGTGSTSWTFNIN 278 (395)
T ss_pred CCCCCCEEEECCCCCCEEEECCC
T ss_conf 03488706853788534763331
No 21
>PRK11914 diacylglycerol kinase; Reviewed
Probab=98.02 E-value=5.3e-05 Score=51.72 Aligned_cols=232 Identities=14% Similarity=0.123 Sum_probs=109.0
Q ss_pred CCCEEEEEEECCCH---HHHHHHHHHHHHCCCC----------------------CHHHCCEEEEECCCHHHHHHHHHHH
Q ss_conf 76505999955998---9999999999870788----------------------8455779999879548999999974
Q gi|254780754|r 3 RNIQKIHFKASNAK---KAQEAYDKFVKIYGNS----------------------TSEEADVIVVLGGDGFMLQSFHQSK 57 (264)
Q Consensus 3 ~~~~ki~i~~~~~~---~a~~~~~~l~~~~~~~----------------------~~~~~Dlii~iGGDGT~L~a~~~~~ 57 (264)
++|+|+.++.|+.- ++.+..+++.+.+.+. ..+.+|++|++|||||+=.++....
T Consensus 4 ~~m~kv~vIvNP~aG~g~~~~~~~~i~~~l~~~g~~~~~~~t~~~~~a~~la~~a~~~g~d~vv~~GGDGTv~ev~~~l~ 83 (304)
T PRK11914 4 HEIGKVTVLTNPLSGHGAAPHAAERAIARLHHRGVDVVEIVGTDAHHARHLVAAALAKGTDALVVVGGDGVISNALQVLA 83 (304)
T ss_pred CCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHC
T ss_conf 45866999999777998568899999999998799099993278789999999888649969999956259889876413
Q ss_pred HCCCEEEEECCCCCCCCCCCCC--HHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCEEEEEEEEEEE------------E
Q ss_conf 1287299415343320104458--7899986642012432034434542124444201577534799------------7
Q gi|254780754|r 58 EYDKPIYGMNCGSVGFLMNEYC--IENLVERLSVAVECTFHPLKMTVFDYDNSICAENILAINEVSI------------I 123 (264)
Q Consensus 58 ~~~~PilGIn~G~lGFL~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~AlNEi~i------------~ 123 (264)
..++|+-=|-+|+-.=++-.+. ..+..++++.+..+...+...-.... ..... .|.+|=+.+ .
T Consensus 84 ~~~~plgiiP~GTgNdfAr~lgip~~d~~~a~~~i~~g~~~~vDlg~v~~--~~~~~-r~f~n~~g~G~da~v~~~~~~~ 160 (304)
T PRK11914 84 GTDIPLGIIPAGTGNDHAREFGIPTGDPEAAADVIVDGWTETVDLGRIQD--DDGID-KWFGTVAATGFDSLVTDRANRM 160 (304)
T ss_pred CCCCEEEEECCCCHHHHHHHCCCCCCCHHHHHHHHHCCCEEEEEEEEEEC--CCCCE-EEEEEEEHHHHHHHHHHHHHHH
T ss_conf 57860899638872688997299987899999887449668886899946--88742-6899980221038899999873
Q ss_pred E---CCC--------CCCEEEEEEEEEEECCEEEEEEEECCEEEEECCCCHHHHHHHCCCEEEEECCC-------EEEEE
Q ss_conf 2---687--------64236788898766787653121035079822665044675229817740886-------05863
Q gi|254780754|r 124 R---KPG--------QNQLVQAAKLEVKVDDQVRLPELVCDGLVVSTPIGSTAYNFSALGPILPLESR-------HLLLT 185 (264)
Q Consensus 124 r---~~~--------~~~~~~~~~~~v~id~~~~~~~~~~DGvivSTptGSTAY~lSaGGpIv~p~~~-------~~~it 185 (264)
| +.. .....+...+++.+||+. .+.++-.+++-..|.. -.||..+.|+++ ++++-
T Consensus 161 k~~~G~l~Y~~~~l~~l~~~~~~~~~l~~dg~~---~~~~~~~~~~v~N~~~----~Ggg~~~~P~A~~~DG~ldv~i~~ 233 (304)
T PRK11914 161 RWPHGRMRYNIAMLAELSKLRPLPFRLVLDGTE---EIVTDLTLAAFGNTRS----YGGGMLICPNADHTDGLLDITMVQ 233 (304)
T ss_pred CCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCE---EEEEEEEEEECCCCCC----CCCCCCCCCCCCCCCCEEEEEEEC
T ss_conf 044664499999999996189853899995955---8999899998267665----477652178777789858999983
Q ss_pred CCCCCCHHH-----HHHCCCCCCCEE-----EEEECCCCCCEEEEEECCEECCCCCEEEEEECCCCCEEEEECC
Q ss_conf 035433011-----110027884148-----9997487887589998898814877899998799518999648
Q gi|254780754|r 186 PVSPFKPRR-----WHGAILPNDVMI-----EIQVLEHKQRPVIATADRLAIEPVSRINVTQSSDITMRILSDS 249 (264)
Q Consensus 186 pI~p~~l~~-----~rplVl~~~~~I-----~i~i~~~~~~~~~~~~D~~~~~~~~~i~I~~s~~~~~~li~~~ 249 (264)
+.....+.. ++.-.+..+... ++++.. + +..+..||... ....++|+.-++ .++++.+.
T Consensus 234 ~~~~~~~l~~~~~~~~G~h~~~~~v~~~~~~~i~i~~-~--~~~~~~DGE~~-~~~p~~i~v~p~-aL~vlvPa 302 (304)
T PRK11914 234 SASRTRLIRLFPTVFKGTHVELDEVSTARARTVHVEC-P--GINAYADGDYA-CPLPAEISAVPG-ALQILRPA 302 (304)
T ss_pred CCCHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEEEEC-C--CCCEEECCCCC-CCCCEEEEEECC-CEEEEECC
T ss_conf 7999999999999967997789987999967999963-9--98178798978-997659999889-08999118
No 22
>PRK13337 putative lipid kinase; Reviewed
Probab=98.01 E-value=0.00026 Score=47.30 Aligned_cols=225 Identities=9% Similarity=0.100 Sum_probs=103.4
Q ss_pred CEEEEEEECCCH---HHHHHHHHHHHHCCCC----------------------CHHHCCEEEEECCCHHHHHHHHHHHHC
Q ss_conf 505999955998---9999999999870788----------------------845577999987954899999997412
Q gi|254780754|r 5 IQKIHFKASNAK---KAQEAYDKFVKIYGNS----------------------TSEEADVIVVLGGDGFMLQSFHQSKEY 59 (264)
Q Consensus 5 ~~ki~i~~~~~~---~a~~~~~~l~~~~~~~----------------------~~~~~Dlii~iGGDGT~L~a~~~~~~~ 59 (264)
|||+.++.|+.- ++++..+++.+.+.+. ..+++|++|++|||||+=.++.-....
T Consensus 2 mkr~~~I~NP~sG~g~~~~~~~~i~~~l~~~g~~~~~~~T~~~g~a~~~a~~~~~~~~d~vv~~GGDGTv~evvngl~~~ 81 (305)
T PRK13337 2 MKRARIIYNPTSGRELFKKNLPDVLQKLEQAGYETSAHATTGPGDATLAARQAAERNFDLVIAAGGDGTLNEVVNGLAEK 81 (305)
T ss_pred CCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHCC
T ss_conf 84599999975688646778999999999879969999827802899999998777999899995762899999998558
Q ss_pred CC-EEEEE-CCCCCCCCCCCCC-HHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCEEEEEEEEEEEE-------------
Q ss_conf 87-29941-5343320104458-78999866420124320344345421244442015775347997-------------
Q gi|254780754|r 60 DK-PIYGM-NCGSVGFLMNEYC-IENLVERLSVAVECTFHPLKMTVFDYDNSICAENILAINEVSII------------- 123 (264)
Q Consensus 60 ~~-PilGI-n~G~lGFL~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~AlNEi~i~------------- 123 (264)
+. |.||| -+|+-.=++..+. +.++.++++.+..+......+ -..++. |.+|=..+.
T Consensus 82 ~~~~~lgiiP~GTgNdfar~lgi~~~~~~a~~~i~~g~~~~iDl--g~vn~~------~f~n~~~~G~~a~v~~~~~~~~ 153 (305)
T PRK13337 82 ENRPKLGIIPVGTTNDFARALGIPRDIEGAADVIIEGHSVPVDI--GKANDR------YFINIAGGGRLTELTYEVPSKL 153 (305)
T ss_pred CCCCEEEEEECCCCHHHHHHCCCCCCHHHHHHHHHCCCEEEEEE--EEECCE------EEEEEECCHHCCHHHHHHHHHH
T ss_conf 99862899707874578998198989999998761697599877--998999------9999924420036688877875
Q ss_pred ECC-C----------CCCEEEEEEEEEEECCEEEEEEEECCEEEEECCCCHHHHHHHCCCEEEEECC-------CEEEEE
Q ss_conf 268-7----------6423678889876678765312103507982266504467522981774088-------605863
Q gi|254780754|r 124 RKP-G----------QNQLVQAAKLEVKVDDQVRLPELVCDGLVVSTPIGSTAYNFSALGPILPLES-------RHLLLT 185 (264)
Q Consensus 124 r~~-~----------~~~~~~~~~~~v~id~~~~~~~~~~DGvivSTptGSTAY~lSaGGpIv~p~~-------~~~~it 185 (264)
+.. + .....+...+++.+||+. + .++.+++.-..|.. -.||.-+.|++ ++.++.
T Consensus 154 k~~~G~l~Y~~~~~~~l~~~~~~~~~i~~dg~~-~---~~~~~~~~v~N~~~----~Ggg~~~aP~A~~~DG~ldv~iv~ 225 (305)
T PRK13337 154 KTILGQLAYYLKGIEMLPSLKPTDVRIEYDGKL-F---QGEIMLFLLGLTNS----VGGFEKLAPDASLDDGLFDLIIVK 225 (305)
T ss_pred HCCCCCHHHHHHHHHHHHHCCCCEEEEEECCEE-E---EEEEEEEEEECCCC----CCCCCCCCCCCCCCCCEEEEEEEC
T ss_conf 025540899999999997278716999999989-9---99899999956655----666754587566779828999984
Q ss_pred CCCCCCHHH-----HHHCCCC-------CCCEEEEEECCCCCCEEEEEECCEECCCCCEEEEEECCCCCEEEEECCCC
Q ss_conf 035433011-----1100278-------84148999748788758999889881487789999879951899964888
Q gi|254780754|r 186 PVSPFKPRR-----WHGAILP-------NDVMIEIQVLEHKQRPVIATADRLAIEPVSRINVTQSSDITMRILSDSHR 251 (264)
Q Consensus 186 pI~p~~l~~-----~rplVl~-------~~~~I~i~i~~~~~~~~~~~~D~~~~~~~~~i~I~~s~~~~~~li~~~~~ 251 (264)
...-..+.. ++.-.+. ...+++|+. ..+..+..||..... ..++|+.-+ +.++++.+++.
T Consensus 226 ~~~~~~~l~l~~~~~~G~h~~~~~V~~~~~~~i~I~~----~~~~~~~~DGE~~g~-~P~~i~v~~-~al~v~vP~~~ 297 (305)
T PRK13337 226 KGNLAELIHIATLALRGEHIKHPKVIYTKANRIKVSS----FDKMQLNLDGEYGGK-LPAEFENLY-RHIEVFAPKDI 297 (305)
T ss_pred CCCHHHHHHHHHHHHCCCCCCCCCEEEEECCEEEEEE----CCCCEEEECCCCCCC-CCEEEEEEC-CEEEEECCCCH
T ss_conf 7999999999999867986789988999917899995----899879848996899-867999994-70799967860
No 23
>PRK13055 putative lipid kinase; Reviewed
Probab=97.94 E-value=0.00048 Score=45.64 Aligned_cols=227 Identities=11% Similarity=0.115 Sum_probs=110.1
Q ss_pred CEEEEEEECCCH---HHHH----HHHHHHHH-CCC-------C-----------CHHHCCEEEEECCCHHHHHHHHHHHH
Q ss_conf 505999955998---9999----99999987-078-------8-----------84557799998795489999999741
Q gi|254780754|r 5 IQKIHFKASNAK---KAQE----AYDKFVKI-YGN-------S-----------TSEEADVIVVLGGDGFMLQSFHQSKE 58 (264)
Q Consensus 5 ~~ki~i~~~~~~---~a~~----~~~~l~~~-~~~-------~-----------~~~~~Dlii~iGGDGT~L~a~~~~~~ 58 (264)
|||+.+|.|+.. .+.+ +.+.|.+. +.. . ..+.+|+|+++|||||+=.++.-...
T Consensus 2 mKr~~lIvNP~SG~g~~~~~~~~i~~~L~~~g~e~~~~~tt~~~~~a~~~a~~a~~~g~d~Iva~GGDGTinevvngl~~ 81 (334)
T PRK13055 2 QKRARLIYNPTSGQEIMKKNVADILDILEQAGYETSAFQTTPEPNSAKNEARRAAKAGFDLIIAAGGDGTINEVVNGIAP 81 (334)
T ss_pred CEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEEECCCCHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHC
T ss_conf 70699999987789757889999999999869859999944178579999998765799899998776089999998734
Q ss_pred CCC-EEEEE-CCCCCCCCCCCCC--HHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCEEEEEEEEEEEE-------E---
Q ss_conf 287-29941-5343320104458--78999866420124320344345421244442015775347997-------2---
Q gi|254780754|r 59 YDK-PIYGM-NCGSVGFLMNEYC--IENLVERLSVAVECTFHPLKMTVFDYDNSICAENILAINEVSII-------R--- 124 (264)
Q Consensus 59 ~~~-PilGI-n~G~lGFL~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~AlNEi~i~-------r--- 124 (264)
.+. |.||| -+|+-.=++..+. ..+..++++.+..+..... .+-..++ . .|.+|=..+- +
T Consensus 82 ~~~~~~LgiIP~GTgNDfAr~Lgip~~~~~~A~~~i~~g~~~~i--Dlg~~n~----~-~yFin~a~~G~~a~v~~~v~~ 154 (334)
T PRK13055 82 LEKRPKMAIIPAGTTNDYARALKIPRGNPVEAAKVILKNQTIKM--DIGRAKG----D-KYFINIAAGGSLTELTYSVPS 154 (334)
T ss_pred CCCCCEEEEEECCCCHHHHHHCCCCCCCHHHHHHHHHCCCEEEE--EEEEECC----C-EEEEEEEEEEECHHHHHHHHH
T ss_conf 69997189980777078999829996699999999862992899--9999889----7-489999998302799998649
Q ss_pred C---C-C----------CCCEEEEEEEEEEECCEEEEEEEECCEEEEECCCCHHHHHHHCCCEEEEECC-------CEEE
Q ss_conf 6---8-7----------6423678889876678765312103507982266504467522981774088-------6058
Q gi|254780754|r 125 K---P-G----------QNQLVQAAKLEVKVDDQVRLPELVCDGLVVSTPIGSTAYNFSALGPILPLES-------RHLL 183 (264)
Q Consensus 125 ~---~-~----------~~~~~~~~~~~v~id~~~~~~~~~~DGvivSTptGSTAY~lSaGGpIv~p~~-------~~~~ 183 (264)
. . + .....+...++|.+|++. +.++..++.-..|.. --||..+.|++ ++++
T Consensus 155 ~~K~~~G~laY~~~~~~~l~~~~~~~~~I~~D~~~----~e~~~~l~~van~~~----~GGg~~iaP~A~~dDGllDv~i 226 (334)
T PRK13055 155 QLKSMFGYLAYLAKGAELLPRVSPVPVRITYDEGV----FEGKISMFFLALTNS----VGGFEQIAPDAKLDDGMFTLII 226 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCEE----EEEEEEEEEEECCCC----CCCCEEECCCCCCCCCEEEEEE
T ss_conf 97531127899999999997379742999999989----997789999944776----4543016897767887799999
Q ss_pred EECCCCCCHHHHHHCCCC-------------CCCEEEEEECCCCCCEEEEEECCEECCCCCEEEEEECCCCCEEEEECCC
Q ss_conf 630354330111100278-------------8414899974878875899988988148778999987995189996488
Q gi|254780754|r 184 LTPVSPFKPRRWHGAILP-------------NDVMIEIQVLEHKQRPVIATADRLAIEPVSRINVTQSSDITMRILSDSH 250 (264)
Q Consensus 184 itpI~p~~l~~~rplVl~-------------~~~~I~i~i~~~~~~~~~~~~D~~~~~~~~~i~I~~s~~~~~~li~~~~ 250 (264)
+.+.+-..+...=|.++. ...+|+|+. ....++.+..||.... -..++++.-++ .++++-+.+
T Consensus 227 vk~~s~~~ll~l~~~~~~~G~h~~~p~V~~~r~k~v~Ies--~~~~~~~v~~DGE~~g-~~Pv~~evlp~-al~v~ap~~ 302 (334)
T PRK13055 227 VKTANLFELLHLMALILNGGKHIDDPRVIYIKTSKLTIEP--LGDDRLMVNLDGEYGG-DAPMTFENLKQ-HIEFFANTD 302 (334)
T ss_pred ECCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEEEEE--CCCCCEEEEECCCCCC-CCCEEEEEECC-CEEEEECHH
T ss_conf 8248999999999999718975899978999900699997--8998417861887389-98779999727-179996420
No 24
>TIGR02482 PFKA_ATP 6-phosphofructokinase; InterPro: IPR012828 6-phosphofructokinase (2.7.1.11 from EC) catalyses the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This entry contains bacterial ATP-dependent 6-phosphofructokinases, which lack a beta-hairpin loop present in IPR012829 from INTERPRO family members. IPR012829 from INTERPRO contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. IPR011183 from INTERPRO represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (2.7.1.90 from EC).; GO: 0003872 6-phosphofructokinase activity, 0005524 ATP binding, 0006002 fructose 6-phosphate metabolic process, 0006096 glycolysis.
Probab=97.55 E-value=0.00017 Score=48.43 Aligned_cols=79 Identities=18% Similarity=0.306 Sum_probs=58.0
Q ss_pred HHHHHHHHHHCCCCCHHHCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCC----------CCCCCCCCCCHHHHHHHHH
Q ss_conf 999999998707888455779999879548999999974128729941534----------3320104458789998664
Q gi|254780754|r 19 QEAYDKFVKIYGNSTSEEADVIVVLGGDGFMLQSFHQSKEYDKPIYGMNCG----------SVGFLMNEYCIENLVERLS 88 (264)
Q Consensus 19 ~~~~~~l~~~~~~~~~~~~Dlii~iGGDGT~L~a~~~~~~~~~PilGIn~G----------~lGFL~~~~~~~~~~~~l~ 88 (264)
++..+.|++ ...|-.|||||||++--|-..+...++|++||=.- ++||= =....+.++++
T Consensus 81 ~kA~~nLK~-------~GI~~LVViGGDGSy~GA~~L~~~gg~~~iGlPGTIDNDI~~TDyTIGfD---TALNTi~~avd 150 (302)
T TIGR02482 81 EKAVENLKK-------LGIEALVVIGGDGSYTGAQKLYEEGGIPVIGLPGTIDNDIQGTDYTIGFD---TALNTILDAVD 150 (302)
T ss_pred HHHHHHHHH-------HCCCEEEEECCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHH---HHHHHHHHHHH
T ss_conf 999999887-------48866899868440688999997179847874585025666432255666---67437998776
Q ss_pred HCCCCCCCEEEEEEEECCC
Q ss_conf 2012432034434542124
Q gi|254780754|r 89 VAVECTFHPLKMTVFDYDN 107 (264)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~ 107 (264)
++.+---+-++.-+++.=|
T Consensus 151 KiRDTA~SHeR~f~iEVMG 169 (302)
T TIGR02482 151 KIRDTATSHERAFVIEVMG 169 (302)
T ss_pred HHHCCCCCCCCEEEEEECC
T ss_conf 5421301216568999507
No 25
>TIGR02483 PFK_mixed phosphofructokinase; InterPro: IPR012829 Members of this family that are characterised, save one, are phosphofructokinases dependent on pyrophosphate (2.7.1.90 from EC) rather than ATP (2.7.1.11 from EC). The exception is one of three phosphofructokinases from Streptomyces coelicolor. Family members are both bacterial and archaeal.; GO: 0005524 ATP binding, 0008443 phosphofructokinase activity, 0006002 fructose 6-phosphate metabolic process, 0006096 glycolysis.
Probab=97.53 E-value=0.00036 Score=46.46 Aligned_cols=77 Identities=17% Similarity=0.254 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHCCCCCHHHCCEEEEECCCHHHHHHHHHHHHCC-CEEEEECC----------CCCCCCCCCCCHHHHHHH
Q ss_conf 9999999998707888455779999879548999999974128-72994153----------433201044587899986
Q gi|254780754|r 18 AQEAYDKFVKIYGNSTSEEADVIVVLGGDGFMLQSFHQSKEYD-KPIYGMNC----------GSVGFLMNEYCIENLVER 86 (264)
Q Consensus 18 a~~~~~~l~~~~~~~~~~~~Dlii~iGGDGT~L~a~~~~~~~~-~PilGIn~----------G~lGFL~~~~~~~~~~~~ 86 (264)
|.++...+.+ ...|.+|+||||||| .+|+++.+.. +|++||=- =+.||=| -.+=..|+
T Consensus 95 Sd~~~~n~~~-------~GlDAlIaIGGdGTL-~~A~~l~~~GGl~vVGVPKTIDNDl~~TD~TFGFDT---Av~iATEA 163 (339)
T TIGR02483 95 SDKIVANLKE-------LGLDALIAIGGDGTL-GIARRLADKGGLPVVGVPKTIDNDLEATDYTFGFDT---AVEIATEA 163 (339)
T ss_pred CHHHHHHHHH-------CCCEEEEEECCCCHH-HHHHHHHHCCCCCEEEECCCCCCCCCCCCCEECCCC---HHHHHHHH
T ss_conf 0899998996-------498189986687268-999999965898547415775467532440222100---78999998
Q ss_pred HHHCCCCCCCEEEEEEEEC
Q ss_conf 6420124320344345421
Q gi|254780754|r 87 LSVAVECTFHPLKMTVFDY 105 (264)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~ 105 (264)
|+++..--.+-....+++.
T Consensus 164 lDRLhtTAeSH~RVmVvEV 182 (339)
T TIGR02483 164 LDRLHTTAESHHRVMVVEV 182 (339)
T ss_pred HHHHHHHHHHHCCEEEEEE
T ss_conf 7524005873194899998
No 26
>PRK13059 putative lipid kinase; Reviewed
Probab=97.48 E-value=0.00061 Score=44.99 Aligned_cols=91 Identities=20% Similarity=0.216 Sum_probs=49.5
Q ss_pred CEEEEEEECCCH---HHHHHHHHHHHHCCCC---------------------CHHHCCEEEEECCCHHHHHHHHHHHHC-
Q ss_conf 505999955998---9999999999870788---------------------845577999987954899999997412-
Q gi|254780754|r 5 IQKIHFKASNAK---KAQEAYDKFVKIYGNS---------------------TSEEADVIVVLGGDGFMLQSFHQSKEY- 59 (264)
Q Consensus 5 ~~ki~i~~~~~~---~a~~~~~~l~~~~~~~---------------------~~~~~Dlii~iGGDGT~L~a~~~~~~~- 59 (264)
|||+.||.|+.. .+.+..+++.+.+.+. ..+..|+|+++|||||+=.++.-....
T Consensus 1 Mkk~~~I~NP~sG~g~~~~~~~~i~~~l~~~~~~~~~~~t~~~~~~~~a~~~~~~~~d~vv~~GGDGTinevvngl~~~~ 80 (294)
T PRK13059 1 MKKVKFIYNPYSGENAIISELDKVIEIHQKYGYLVVPYRISLGCDLKEAFKDIDESYKYILIAGGDGTVDNVVNAMKKLN 80 (294)
T ss_pred CCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEEECCCHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHCC
T ss_conf 97799999976688666889999999999779889999853560899999988748988999956788999999998569
Q ss_pred -CCEEEEECCCCCCCCCCCCC-HHHHHHHHHHCCCCCC
Q ss_conf -87299415343320104458-7899986642012432
Q gi|254780754|r 60 -DKPIYGMNCGSVGFLMNEYC-IENLVERLSVAVECTF 95 (264)
Q Consensus 60 -~~PilGIn~G~lGFL~~~~~-~~~~~~~l~~~~~~~~ 95 (264)
++|+-=|-+|+-.=++-... +.++.++++.+..+..
T Consensus 81 ~~~~lgiiP~GTgNdfAr~Lgip~~~~~a~~~i~~g~~ 118 (294)
T PRK13059 81 IDIPIGILPVGTANDFAKFIGMPTNVGEACEQILKSKP 118 (294)
T ss_pred CCCCEEEEECCCCCHHHHHCCCCCCHHHHHHHHHCCCE
T ss_conf 99857998267750789982999999999998843966
No 27
>PRK12361 hypothetical protein; Provisional
Probab=97.41 E-value=0.012 Score=36.79 Aligned_cols=225 Identities=11% Similarity=0.118 Sum_probs=106.2
Q ss_pred EEEEEECCC-------HHHHHHHHHHHHHCCC----C-------------CHHHCCEEEEECCCHHHHHHHHHHHHCCCE
Q ss_conf 599995599-------8999999999987078----8-------------845577999987954899999997412872
Q gi|254780754|r 7 KIHFKASNA-------KKAQEAYDKFVKIYGN----S-------------TSEEADVIVVLGGDGFMLQSFHQSKEYDKP 62 (264)
Q Consensus 7 ki~i~~~~~-------~~a~~~~~~l~~~~~~----~-------------~~~~~Dlii~iGGDGT~L~a~~~~~~~~~P 62 (264)
+-.+|+|+- ++.+++...|...|.- . -.+.+|+||+-|||||+=.++....+.++|
T Consensus 243 ~a~li~NPvsG~g~~~~~~~~i~~~L~~~~~l~v~~t~~~~~a~~LArqAv~~GaDlVVAaGGDGTVneVA~aLvgTdv~ 322 (546)
T PRK12361 243 RAWLIANPVSGGGKWQQYGEQIIQELKAYFDLTVKLTTPDISANTLAKQARKAGADIIIACGGDGTVTEVASELVNTDIT 322 (546)
T ss_pred CEEEEECCCCCCCCHHHHHHHHHHHHHHHEEEEEEECCCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCCCCC
T ss_conf 55999836778987688999999973531768999668888999999999974999999988852999999997189982
Q ss_pred --EEEECCCCCCCCCCCC-----CHHHHHHHHHHCCCCCCCEEEEEEEECCCCC------------------------CC
Q ss_conf --9941534332010445-----8789998664201243203443454212444------------------------42
Q gi|254780754|r 63 --IYGMNCGSVGFLMNEY-----CIENLVERLSVAVECTFHPLKMTVFDYDNSI------------------------CA 111 (264)
Q Consensus 63 --ilGIn~G~lGFL~~~~-----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~------------------------~~ 111 (264)
|+...+|+ -|+... ....+.++++.+..+...+...- ..++.. .+
T Consensus 323 LGIIPlGTaN--~lAR~L~Gl~~~l~Ple~A~~~I~~G~~r~IDlg--~~N~r~Fl~~AGiGfdA~vi~~a~relK~~~G 398 (546)
T PRK12361 323 LGIIPLGTAN--ALSHALFGLGSKLIPVSQACDNIIQGHTQRIDTA--RCNDELMLLLVGIGFEQKMIESADRERKNALG 398 (546)
T ss_pred EEEECCCCHH--HHHHHCCCCCCCCCCHHHHHHHHHCCCCEEEEEE--EECCEEEEEEEECCCCHHHHHHCCHHHHHCCC
T ss_conf 4996177557--8898614588877789999999972981577899--99997999997316378999650899886325
Q ss_pred EEEE---EEEEEEEEECCCCCCEEEEEEEEEEECCEEEEEEEECCEEEEECCCCHHHHHHHCCCEEEEEC---CCEEEEE
Q ss_conf 0157---753479972687642367888987667876531210350798226650446752298177408---8605863
Q gi|254780754|r 112 ENIL---AINEVSIIRKPGQNQLVQAAKLEVKVDDQVRLPELVCDGLVVSTPIGSTAYNFSALGPILPLE---SRHLLLT 185 (264)
Q Consensus 112 ~~~~---AlNEi~i~r~~~~~~~~~~~~~~v~id~~~~~~~~~~DGvivSTptGSTAY~lSaGGpIv~p~---~~~~~it 185 (264)
.-.| +++.+. ..+..+++|.+||+. ..+.+.--++|+-..-= +..++-||+-..++ +++.++.
T Consensus 399 ~LAYl~a~lr~L~---------~~~~~~~~I~lDg~~-~~~~~a~~vvVAN~a~~-t~~laqG~g~a~~dDGlLDV~iL~ 467 (546)
T PRK12361 399 QLAYLDGLWRAVN---------ENETLTLQVTLDDAE-PQTIETHSLVVANAAPF-TTLLAQGNGEPNMTDGLLDITWLD 467 (546)
T ss_pred HHHHHHHHHHHHH---------HCCCEEEEEEECCCC-CEEEEEEEEEEECCCCC-CCCCCCCCCCCCCCCCCEEEEEEC
T ss_conf 8999999999986---------479647999998976-37999999999866544-540014689987787724789980
Q ss_pred CCCCC--CHHHHHHCCCC------CCCEE------EEEECCCCCCEEEEEECCEECCCCCEEEEEECCCCCEEEEECCC
Q ss_conf 03543--30111100278------84148------99974878875899988988148778999987995189996488
Q gi|254780754|r 186 PVSPF--KPRRWHGAILP------NDVMI------EIQVLEHKQRPVIATADRLAIEPVSRINVTQSSDITMRILSDSH 250 (264)
Q Consensus 186 pI~p~--~l~~~rplVl~------~~~~I------~i~i~~~~~~~~~~~~D~~~~~~~~~i~I~~s~~~~~~li~~~~ 250 (264)
|-... .+.++.++... ....+ +|++.. ..+..+..||... ..+.++|+..++ .++++-+..
T Consensus 468 ~~~~~~~~ll~l~~L~~~g~g~~~~~~~V~~~ra~~I~I~t--~~p~~v~lDGE~~-~~tpl~IeV~P~-AL~ViVP~~ 542 (546)
T PRK12361 468 SGAEPGDQLLSLAELALAGWGKEAEANKVHHAHAKKVTISS--QPPCKYVIDGEIF-EPEDLTIEVQPA-SLKVFVPYQ 542 (546)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEEEEC--CCCCEEEECCCCC-CCCCEEEEEECC-CEEEEECCC
T ss_conf 67753588999999997432676678846999954999981--8981688798757-787359999758-069992675
No 28
>PRK13054 lipid kinase; Reviewed
Probab=97.35 E-value=0.001 Score=43.51 Aligned_cols=229 Identities=14% Similarity=0.106 Sum_probs=109.5
Q ss_pred CCCEEEEEEECCCHH----HHHHHHHHHHHCCCC------------------CHHHCCEEEEECCCHHHHHHHHHHHHCC
Q ss_conf 765059999559989----999999999870788------------------8455779999879548999999974128
Q gi|254780754|r 3 RNIQKIHFKASNAKK----AQEAYDKFVKIYGNS------------------TSEEADVIVVLGGDGFMLQSFHQSKEYD 60 (264)
Q Consensus 3 ~~~~ki~i~~~~~~~----a~~~~~~l~~~~~~~------------------~~~~~Dlii~iGGDGT~L~a~~~~~~~~ 60 (264)
++|+|..+|.|.... ..++.+.|.+...+. ..+.+|+||+.|||||+=.++.-....+
T Consensus 1 ~~~~k~lli~N~~~~g~~~~~~~~~~l~~~~~~~~~~~T~~~gda~~la~~a~~~g~d~vv~~GGDGTv~evvngl~~~~ 80 (299)
T PRK13054 1 MEFPKSLLILNGKSAGNEELREAVGLLREEGHTLHVRVTWEKGDAARYVEEALALGVATVIAGGGDGTLNEVATALAQLE 80 (299)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHCC
T ss_conf 99856999981700050689999999997698799996489745999999998779989999877229999999997478
Q ss_pred C---EEEEEC-CCCCCCCCCCCC-HHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCEEEEEEEEEEE-------EE----
Q ss_conf 7---299415-343320104458-7899986642012432034434542124444201577534799-------72----
Q gi|254780754|r 61 K---PIYGMN-CGSVGFLMNEYC-IENLVERLSVAVECTFHPLKMTVFDYDNSICAENILAINEVSI-------IR---- 124 (264)
Q Consensus 61 ~---PilGIn-~G~lGFL~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~AlNEi~i-------~r---- 124 (264)
. |.|||= +|+-.=++-.+. +.+..++++.+..+...+. .+-..++ +.|.+|=..+ .+
T Consensus 81 ~~~~~~LgiiP~GTgNdfAR~lgip~d~~~a~~~i~~g~~~~i--Dlg~vn~-----~~~F~n~a~~Gfda~v~~~~~~~ 153 (299)
T PRK13054 81 GDDRPSLGILPLGTANDFATAAGIPLEPDKALKLAIEGNAQPI--DLARVND-----QTYFINMATGGFGTQVTTETPEK 153 (299)
T ss_pred CCCCCEEEEECCCCHHHHHHHCCCCCCHHHHHHHHHCCCEEEE--EEEEECC-----EEEEEEEEEEHHHHHHHHHHHHH
T ss_conf 8778639996387568999982999899999977846987998--5999999-----88999987244658999876798
Q ss_pred --CC-C----------CCCEEEEEEEEEEECCEEEEEEEECCEEEEECCCCHHHHHHHCCCEEEEECC-------CEEEE
Q ss_conf --68-7----------6423678889876678765312103507982266504467522981774088-------60586
Q gi|254780754|r 125 --KP-G----------QNQLVQAAKLEVKVDDQVRLPELVCDGLVVSTPIGSTAYNFSALGPILPLES-------RHLLL 184 (264)
Q Consensus 125 --~~-~----------~~~~~~~~~~~v~id~~~~~~~~~~DGvivSTptGSTAY~lSaGGpIv~p~~-------~~~~i 184 (264)
.. + .....+..++++..|+.. +.++-+.++-..|.. ..||..+.|++ +++++
T Consensus 154 ~K~~~G~~aY~~~~l~~~~~~~~~~~~i~~d~~~----~~~~~~~~~v~N~~~----~Ggg~~i~P~A~~dDGlldv~i~ 225 (299)
T PRK13054 154 LKAALGGVAYLITGLMRMDTLKPDRCEIRGPDFH----WQGDALVIGIGNGRQ----AGGGQQLCPEALINDGLLDLRIL 225 (299)
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCEEEEEEECCEE----EEEEEEEEEECCCCC----CCCCCEECCCCCCCCCCEEEEEE
T ss_conf 7644258999999999997079768999989999----998899999908875----47983648987378981799998
Q ss_pred ECCCCCCHHHHH---------HCCCC-CCCEEEEEECCCCCCEEEEEECCEECCCCCEEEEEECCCCCEEEEECCCCCHH
Q ss_conf 303543301111---------00278-84148999748788758999889881487789999879951899964888899
Q gi|254780754|r 185 TPVSPFKPRRWH---------GAILP-NDVMIEIQVLEHKQRPVIATADRLAIEPVSRINVTQSSDITMRILSDSHRSWS 254 (264)
Q Consensus 185 tpI~p~~l~~~r---------plVl~-~~~~I~i~i~~~~~~~~~~~~D~~~~~~~~~i~I~~s~~~~~~li~~~~~~f~ 254 (264)
.+. ..+...- |-+.. ...+++|+ . .+++.+..||-.+. ...++|+.-++ .++++.+++..+.
T Consensus 226 ~~~--~~l~~l~~~l~~g~~~~~v~~~~~~~i~i~--~--~~~~~~~~DGE~~~-~~p~~i~v~P~-aLrV~vP~~~p~~ 297 (299)
T PRK13054 226 PAP--EELPALLSTLLSGEDNPNFVRARLPWLEIQ--A--PHELTFNLDGEPLS-GRHFRIEVLPA-ALRCRLPPDCPLL 297 (299)
T ss_pred CCH--HHHHHHHHHHHCCCCCCCEEEEEEEEEEEE--C--CCCCEEEECCCCCC-CCCEEEEEECC-EEEEECCCCCCCC
T ss_conf 886--799999999846788997899992099998--4--99878998899888-97239999889-6899899998544
No 29
>PRK00861 putative lipid kinase; Reviewed
Probab=97.31 E-value=0.0014 Score=42.67 Aligned_cols=231 Identities=12% Similarity=0.129 Sum_probs=103.7
Q ss_pred CEEEEEEECCCH---HHHHHHHHHHHHCCC---------------------CCHHHCCEEEEECCCHHHHHHHHHHHHCC
Q ss_conf 505999955998---999999999987078---------------------88455779999879548999999974128
Q gi|254780754|r 5 IQKIHFKASNAK---KAQEAYDKFVKIYGN---------------------STSEEADVIVVLGGDGFMLQSFHQSKEYD 60 (264)
Q Consensus 5 ~~ki~i~~~~~~---~a~~~~~~l~~~~~~---------------------~~~~~~Dlii~iGGDGT~L~a~~~~~~~~ 60 (264)
+||+.++.|+.. ++.+..+.+.+.+.. ...+.+|+||++|||||+=.++.-....+
T Consensus 2 ~kr~~~IvNP~aG~g~~~~~~~~i~~~l~~~~~~~v~~T~~~~~a~~la~~a~~~~~d~vv~~GGDGTv~ev~~gl~~~~ 81 (296)
T PRK00861 2 TRSACLIFNPVAGQGNPEVDLALIRAILQPEMDLDIYLTTPEIGADALAQEAVERGAELIIASGGDGTISAVAGALIGTD 81 (296)
T ss_pred CEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHCCCC
T ss_conf 70799999867899864657999999997299689999578886999999998679989999888189999997533589
Q ss_pred CEEEEECCCCCCCCCCCCC-HHHHHHHHHHCCCCCCCEEEEEEEECCCCCCC------EEEEEEEEEE--EEECCC----
Q ss_conf 7299415343320104458-78999866420124320344345421244442------0157753479--972687----
Q gi|254780754|r 61 KPIYGMNCGSVGFLMNEYC-IENLVERLSVAVECTFHPLKMTVFDYDNSICA------ENILAINEVS--IIRKPG---- 127 (264)
Q Consensus 61 ~PilGIn~G~lGFL~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~------~~~~AlNEi~--i~r~~~---- 127 (264)
+|+-=|=+|+-.=++-.+. +.++.++++.+..+......+ -..++.... -...+.+++- ..+..+
T Consensus 82 ~~lgiiP~GTgNdfAr~lgip~~~~~a~~~i~~g~~~~iDl--g~~n~~~f~~~ag~G~da~v~~~~~~~~k~~~G~~aY 159 (296)
T PRK00861 82 IPLGIIPRGTANAFAVALGIPDTLEQACETILQGKTRRVDV--AYCNGQPMILLAGIGFEAETVEEADREAKNRFGILAY 159 (296)
T ss_pred CCEEEEECCCHHHHHHHCCCCCCHHHHHHHHHCCCEEEEEE--EEECCEEEEEEECCCCCHHHHHHHHHHHHCCCCHHHH
T ss_conf 61699807665799998399989999999985298699889--9999999999953050079998765775106656999
Q ss_pred ------CCCEEEEEEEEEEECCEEEEEEEECCEEEEECCCCHHHHHHHCCC-EEEEEC---CCEEEEECCCCCCHHH---
Q ss_conf ------642367888987667876531210350798226650446752298-177408---8605863035433011---
Q gi|254780754|r 128 ------QNQLVQAAKLEVKVDDQVRLPELVCDGLVVSTPIGSTAYNFSALG-PILPLE---SRHLLLTPVSPFKPRR--- 194 (264)
Q Consensus 128 ------~~~~~~~~~~~v~id~~~~~~~~~~DGvivSTptGSTAY~lSaGG-pIv~p~---~~~~~itpI~p~~l~~--- 194 (264)
.....+...+++.+|++. + ++++--+.++. +...+..-++| |-..|+ +++.++.+......-.
T Consensus 160 ~~~~l~~l~~~~~~~~~i~~d~~~-~-~~~~~~i~v~n--~~~~~~~~~~~~~~a~~dDG~ldv~~~~~~~~~~~l~~~~ 235 (296)
T PRK00861 160 ILSGLQQLQELEPFEVEIETEDQI-I-TFNAVAVTVAN--AAPPTSVLAQGPGGVIPDDGLLDVTIVAPKNLAEAVAASY 235 (296)
T ss_pred HHHHHHHHHHCCCEEEEEEECCEE-E-EEEEEEEEEEC--CCCCCCCCCCCCCCCCCCCCEEEEEEEECCCHHHHHHHHH
T ss_conf 999999986079749999999999-9-99899999999--9986666666772358778826799993187899999999
Q ss_pred --H------HHCCCC-----CCCEEEEEECCCCCCEEEEEECCEECCCCCEEEEEECCCCCEEEEE
Q ss_conf --1------100278-----8414899974878875899988988148778999987995189996
Q gi|254780754|r 195 --W------HGAILP-----NDVMIEIQVLEHKQRPVIATADRLAIEPVSRINVTQSSDITMRILS 247 (264)
Q Consensus 195 --~------rplVl~-----~~~~I~i~i~~~~~~~~~~~~D~~~~~~~~~i~I~~s~~~~~~li~ 247 (264)
+ ++.-.| ..++++|+. ..+..+..||..+. ...++|+.-++ .++++.
T Consensus 236 ~l~~~~~~g~~~~~~~v~~~~~~~i~I~~----~~~~~~~~DGE~~~-~~p~~i~v~p~-aL~v~v 295 (296)
T PRK00861 236 HLLQTALQGNPAERDDIGYLRTRQVKITT----DPPQKVVIDGEVVG-TTPIEIECVPR-SLKVFA 295 (296)
T ss_pred HHHHHHHCCCCCCCCCEEEEECCEEEEEE----CCCCEEEECCCCCC-CCEEEEEEECC-EEEEEC
T ss_conf 99999755997778988999947999996----89988996289898-95069999899-599977
No 30
>COG3199 Predicted inorganic polyphosphate/ATP-NAD kinase [General function prediction only]
Probab=97.17 E-value=0.0023 Score=41.39 Aligned_cols=59 Identities=22% Similarity=0.285 Sum_probs=42.3
Q ss_pred HCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCCCC-CCCCHHHHHHHHHHCCCCCC
Q ss_conf 5779999879548999999974128729941534332010-44587899986642012432
Q gi|254780754|r 36 EADVIVVLGGDGFMLQSFHQSKEYDKPIYGMNCGSVGFLM-NEYCIENLVERLSVAVECTF 95 (264)
Q Consensus 36 ~~Dlii~iGGDGT~L~a~~~~~~~~~PilGIn~G~lGFL~-~~~~~~~~~~~l~~~~~~~~ 95 (264)
..|+|+..|||||.--.+.-. +.++|+|||-+|.--|.. -..++++....+.....+..
T Consensus 100 gVdlIvfaGGDGTarDVa~av-~~~vPvLGipaGvk~~SgvfA~~P~~aa~l~~~~lkg~~ 159 (355)
T COG3199 100 GVDLIVFAGGDGTARDVAEAV-GADVPVLGIPAGVKNYSGVFALSPEDAARLLGAFLKGNA 159 (355)
T ss_pred CCEEEEEECCCCCHHHHHHHC-CCCCCEEEECCCCCEECCCCCCCHHHHHHHHHHHHCCCC
T ss_conf 961999957885299998532-678866741356502035201482778999999853432
No 31
>TIGR00147 TIGR00147 conserved hypothetical protein TIGR00147; InterPro: IPR005218 Although the proteins in this group all contain the diacylglycerol kinase catalytic domain, their function is, as yet, unknown..
Probab=96.98 E-value=0.0011 Score=43.30 Aligned_cols=132 Identities=18% Similarity=0.306 Sum_probs=72.0
Q ss_pred HCCEEEEECCCHHHHHHHH---HHHHCCCEEEEEC-CCCCCCCCCCC------CHHHHHHHHHHCCCCCCCEEEEEEEEC
Q ss_conf 5779999879548999999---9741287299415-34332010445------878999866420124320344345421
Q gi|254780754|r 36 EADVIVVLGGDGFMLQSFH---QSKEYDKPIYGMN-CGSVGFLMNEY------CIENLVERLSVAVECTFHPLKMTVFDY 105 (264)
Q Consensus 36 ~~Dlii~iGGDGT~L~a~~---~~~~~~~PilGIn-~G~lGFL~~~~------~~~~~~~~l~~~~~~~~~~~~~~~~~~ 105 (264)
..|.||++|||||+=..+. ...+.++|=|||= .|+- |+| ..+++.++++.+..+.-....+-....
T Consensus 62 ~~~~vi~~GGDGTi~ev~naL~~~d~~diP~lg~~P~Gt~----NDFsr~lgIp~~~L~ka~~~~~~G~~~~~d~gqvN~ 137 (316)
T TIGR00147 62 KVDTVIALGGDGTIHEVVNALKDLDDKDIPALGILPVGTA----NDFSRALGIPKEDLIKAAKKVIAGKARAIDLGQVNK 137 (316)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEECCCCC----CCHHHHCCCCHHHHHHHHHHHHCCCCCEEEEECCCC
T ss_conf 6668999618984899988887512577882454357655----503331387589999999998388973466422267
Q ss_pred CCCCCCEEEEEEEEEEEE------------------------------ECCCCCCEEEEEEEEEEECCEEEEEEEECCEE
Q ss_conf 244442015775347997------------------------------26876423678889876678765312103507
Q gi|254780754|r 106 DNSICAENILAINEVSII------------------------------RKPGQNQLVQAAKLEVKVDDQVRLPELVCDGL 155 (264)
Q Consensus 106 ~~~~~~~~~~AlNEi~i~------------------------------r~~~~~~~~~~~~~~v~id~~~~~~~~~~DGv 155 (264)
..+ ..+-.|-+|=+-+- ++-....+.+--.+++..||+. +++|-|
T Consensus 138 ~~~-ksqilyF~N~~GiG~day~~~~~~~~p~~rvflk~~LG~~~Y~~~~L~~~~s~~p~~~~~~~d~~~----~~~~~~ 212 (316)
T TIGR00147 138 QYD-KSQILYFINIAGIGFDAYVTELTTEVPEKRVFLKALLGKLSYFLSGLEALASLKPFELEIKIDGEE----IQGEAV 212 (316)
T ss_pred CCH-HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCE----EECCEE
T ss_conf 200-467877775443115567765653154078899997425657875774322468855899765823----300146
Q ss_pred EEECC-CCHHHHHHHCCCEEEEECCC
Q ss_conf 98226-65044675229817740886
Q gi|254780754|r 156 VVSTP-IGSTAYNFSALGPILPLESR 180 (264)
Q Consensus 156 ivSTp-tGSTAY~lSaGGpIv~p~~~ 180 (264)
++.=- -| .+.-||-.+-|++.
T Consensus 213 ~~~v~sn~----~~~GG~~~~~P~A~ 234 (316)
T TIGR00147 213 LFLVVSNG----RFVGGGEKLAPDAS 234 (316)
T ss_pred EEEEECCC----CCCCCCCCCCCCCC
T ss_conf 88752256----53576533377687
No 32
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=96.72 E-value=0.054 Score=32.72 Aligned_cols=194 Identities=16% Similarity=0.216 Sum_probs=93.2
Q ss_pred HCCEEEEECCCHHHHHHHHHHHHCCCEEEEEC-CCCCCCCCC--CCCHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCE
Q ss_conf 57799998795489999999741287299415-343320104--458789998664201243203443454212444420
Q gi|254780754|r 36 EADVIVVLGGDGFMLQSFHQSKEYDKPIYGMN-CGSVGFLMN--EYCIENLVERLSVAVECTFHPLKMTVFDYDNSICAE 112 (264)
Q Consensus 36 ~~Dlii~iGGDGT~L~a~~~~~~~~~PilGIn-~G~lGFL~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (264)
..|.||+.|||||+=.++.-....+.|.|||= +|+-.=++- .+..+++.++++.+..+.-....+- ..++.
T Consensus 58 ~~D~via~GGDGTv~evingl~~~~~~~LgilP~GT~NdfAr~Lgip~~~~~~Al~~i~~g~~~~vDlg--~~~~~---- 131 (301)
T COG1597 58 GYDTVIAAGGDGTVNEVANGLAGTDDPPLGILPGGTANDFARALGIPLDDIEAALELIKSGETRKVDLG--QVNGR---- 131 (301)
T ss_pred CCCEEEEECCCCHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEEHH--HCCCC----
T ss_conf 898899963488799999887337998179934865778899859994549999999863986997534--33895----
Q ss_pred EEEEEEEEEE--------EECCC----------------CCCEEEEEEEEEEECCEEEEEEEECCEEEEECCCCHHHHHH
Q ss_conf 1577534799--------72687----------------64236788898766787653121035079822665044675
Q gi|254780754|r 113 NILAINEVSI--------IRKPG----------------QNQLVQAAKLEVKVDDQVRLPELVCDGLVVSTPIGSTAYNF 168 (264)
Q Consensus 113 ~~~AlNEi~i--------~r~~~----------------~~~~~~~~~~~v~id~~~~~~~~~~DGvivSTptGSTAY~l 168 (264)
. |.+|=..+ ..... .....+..++++.+|++. + .++.+.+..-.+-
T Consensus 132 ~-~fin~a~~G~~a~~~~~~~~~~k~~~g~~~y~~~~~~~l~~~~~~~~~i~~d~~~-~---~~~~~~~~~~~~~----- 201 (301)
T COG1597 132 R-YFINNAGIGFDAEVVAAVEEERKKGFGRLAYALAGLAVLARLKPFRIEIEYDGKT-F---EGEALALLVFNGN----- 201 (301)
T ss_pred C-EEEEEECCCCCHHHHHHCCHHHHHCCCHHHHHHHHHHHCCCCCCCCEEEEECCCE-E---CCCEEEEEEECCC-----
T ss_conf 4-6988740450238887514776516422799999998604268971899985860-1---0220799997067-----
Q ss_pred HCCC-EEEEEC-------CCEEEEECCCCCCHHH-----HHH-------CCCCCCCEEEEEECCCCCCEEEEEECCEECC
Q ss_conf 2298-177408-------8605863035433011-----110-------0278841489997487887589998898814
Q gi|254780754|r 169 SALG-PILPLE-------SRHLLLTPVSPFKPRR-----WHG-------AILPNDVMIEIQVLEHKQRPVIATADRLAIE 228 (264)
Q Consensus 169 SaGG-pIv~p~-------~~~~~itpI~p~~l~~-----~rp-------lVl~~~~~I~i~i~~~~~~~~~~~~D~~~~~ 228 (264)
+.|| ..+.|+ ++.+++.+.+...+.. .|. +......+++|+ .. .+..+..||--..
T Consensus 202 ~~gg~~~~~p~a~~~dG~l~~~i~~~~~~~~~~~l~~~~~~G~~~~~~~v~~~~~~~~~i~--~~--~~~~~~~DGE~~~ 277 (301)
T COG1597 202 SYGGGMKLAPDASLDDGLLDVYILKPQSLLELLALLPDLLRGKHLENPDVEYLRAKKLEIT--SD--PPIPVNLDGEYLG 277 (301)
T ss_pred CCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCEEEEE--CC--CCCEEEECCCCCC
T ss_conf 5677533378898988842799976876778899999976776447885399744279997--79--9955876784578
Q ss_pred CCCEEEEEECCCCCEEEEECCCC
Q ss_conf 87789999879951899964888
Q gi|254780754|r 229 PVSRINVTQSSDITMRILSDSHR 251 (264)
Q Consensus 229 ~~~~i~I~~s~~~~~~li~~~~~ 251 (264)
...+.++.-+. .++++-++++
T Consensus 278 -~~p~~i~~~p~-al~vl~p~~~ 298 (301)
T COG1597 278 -KTPVTIEVLPG-ALRVLVPPDR 298 (301)
T ss_pred -CCCEEEEEECC-EEEEECCCCC
T ss_conf -77379998046-2799647877
No 33
>PRK03202 6-phosphofructokinase; Provisional
Probab=96.41 E-value=0.0098 Score=37.37 Aligned_cols=54 Identities=30% Similarity=0.454 Sum_probs=39.1
Q ss_pred HHCCEEEEECCCHHHHHHHHHHHHCCCEEEEECC----------CCCCCCCCCCCHHHHHHHHHHCC
Q ss_conf 5577999987954899999997412872994153----------43320104458789998664201
Q gi|254780754|r 35 EEADVIVVLGGDGFMLQSFHQSKEYDKPIYGMNC----------GSVGFLMNEYCIENLVERLSVAV 91 (264)
Q Consensus 35 ~~~Dlii~iGGDGT~L~a~~~~~~~~~PilGIn~----------G~lGFL~~~~~~~~~~~~l~~~~ 91 (264)
.+.|.+++||||||+-.|.+.....++|++||=- =+.||-+. .+...++++++.
T Consensus 93 ~~Id~Li~IGGdgS~~~a~~L~~~~~i~vigIPkTIDNDl~~tD~t~Gf~TA---~~~~~~aid~i~ 156 (323)
T PRK03202 93 HGIDALVVIGGDGSYDGAKKLSEEYGIPCIGIPKTIDNDLAGTDYTIGFDTA---LNTVVEAIDKLR 156 (323)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCHHHH---HHHHHHHHHHHH
T ss_conf 2999999937946999999998437974897214446898777678888999---999999986657
No 34
>PRK13057 putative lipid kinase; Reviewed
Probab=96.13 E-value=0.028 Score=34.48 Aligned_cols=194 Identities=14% Similarity=0.142 Sum_probs=91.6
Q ss_pred HHCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCC-HHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCEE
Q ss_conf 557799998795489999999741287299415343320104458-7899986642012432034434542124444201
Q gi|254780754|r 35 EEADVIVVLGGDGFMLQSFHQSKEYDKPIYGMNCGSVGFLMNEYC-IENLVERLSVAVECTFHPLKMTVFDYDNSICAEN 113 (264)
Q Consensus 35 ~~~Dlii~iGGDGT~L~a~~~~~~~~~PilGIn~G~lGFL~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (264)
+.+|+|++.|||||+=.++.-....++|+-=|=+|+-.=++-.+. +.++.+++..+..+...+.. +-..++.
T Consensus 49 ~~~d~vv~~GGDGTv~ev~~gl~~~~~~lgiiP~GTgNdfAr~lgip~d~~~a~~~i~~g~~~~iD--lg~vn~~----- 121 (287)
T PRK13057 49 DGVDLVIVGGGDGTLNAAAPALVETGLPLGILPLGTANDLARTLGIPLDLEAAARVIARGKVRRID--LGWVNGH----- 121 (287)
T ss_pred CCCCEEEEECCHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHCCCCCCHHHHHHHHHCCCEEEEE--EEEECCE-----
T ss_conf 699989998858999999998605798369973886467899839998999999998659849996--8888898-----
Q ss_pred EEEEEEEEEE--------------ECCC----------CCCEEEEEEEEEEECCEEEEEEEECCEEEEECCCCHHHHHHH
Q ss_conf 5775347997--------------2687----------642367888987667876531210350798226650446752
Q gi|254780754|r 114 ILAINEVSII--------------RKPG----------QNQLVQAAKLEVKVDDQVRLPELVCDGLVVSTPIGSTAYNFS 169 (264)
Q Consensus 114 ~~AlNEi~i~--------------r~~~----------~~~~~~~~~~~v~id~~~~~~~~~~DGvivSTptGSTAY~lS 169 (264)
+.+|-+.+- +..+ .....+...+++.+||+. + ..+.+.++-..|. +-
T Consensus 122 -~f~~~~~~G~~a~v~~~~~~~~k~~~G~~~Y~~~~~~~l~~~~~~~~~i~~dg~~-~---~~~~~~~~v~N~~----~~ 192 (287)
T PRK13057 122 -YFFNVASLGLSAELARRLTKELKRRWGTLGYAIAALRVLRRSRPFTAEIEHDGRT-E---RVKTLQVAVGNGR----YY 192 (287)
T ss_pred -EEEEEEEECCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCEEEEEEECCEE-E---EEEEEEEEEECCC----CC
T ss_conf -9999978801499999876987742037999999999996369739999989989-9---9879999981665----43
Q ss_pred CCCEEEEECC-------CEEEEECCCCCCHHH-----HHH-------CCCCCCCEEEEEECCCCCCEEEEEECCEECCCC
Q ss_conf 2981774088-------605863035433011-----110-------027884148999748788758999889881487
Q gi|254780754|r 170 ALGPILPLES-------RHLLLTPVSPFKPRR-----WHG-------AILPNDVMIEIQVLEHKQRPVIATADRLAIEPV 230 (264)
Q Consensus 170 aGGpIv~p~~-------~~~~itpI~p~~l~~-----~rp-------lVl~~~~~I~i~i~~~~~~~~~~~~D~~~~~~~ 230 (264)
.||..+.|++ +++++.+.....+.. ++. +..-...+|+|+. . .+..+..||.... .
T Consensus 193 ggg~~~~p~a~~~DG~ldv~~~~~~~~~~l~~~~~~~~~G~~~~~~~v~~~~~~~i~i~~--~--~~~~v~~DGE~~~-~ 267 (287)
T PRK13057 193 GGGMAVAPDATIDDGRLDLYSLEVAHWWRLLALLPALRRGRHGEWPDVRAFRTTELEVRT--R--KPRPVNTDGELVT-F 267 (287)
T ss_pred CCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCEEEEEE--C--CCCEEEECCCCCC-C
T ss_conf 677542687877788589999815999999999999965987789988999988999996--9--9988982389898-9
Q ss_pred CEEEEEECCCCCEEEEECCC
Q ss_conf 78999987995189996488
Q gi|254780754|r 231 SRINVTQSSDITMRILSDSH 250 (264)
Q Consensus 231 ~~i~I~~s~~~~~~li~~~~ 250 (264)
..++|+.-++ .++++.++.
T Consensus 268 ~p~~i~v~p~-aL~v~vP~p 286 (287)
T PRK13057 268 TPAHFRVAPK-ALRVFAPPP 286 (287)
T ss_pred CCEEEEEECC-EEEEECCCC
T ss_conf 7559999999-499987899
No 35
>cd00763 Bacterial_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include bacterial ATP-dependent phosphofructokinases. These are allosrterically regulated homotetramers; the subunits are of about 320 amino acids.
Probab=95.94 E-value=0.024 Score=34.96 Aligned_cols=53 Identities=26% Similarity=0.434 Sum_probs=36.3
Q ss_pred HHCCEEEEECCCHHHHHHHHHHHHCCCEEEEECC----------CCCCCCCCCCCHHHHHHHHHHCC
Q ss_conf 5577999987954899999997412872994153----------43320104458789998664201
Q gi|254780754|r 35 EEADVIVVLGGDGFMLQSFHQSKEYDKPIYGMNC----------GSVGFLMNEYCIENLVERLSVAV 91 (264)
Q Consensus 35 ~~~Dlii~iGGDGT~L~a~~~~~~~~~PilGIn~----------G~lGFL~~~~~~~~~~~~l~~~~ 91 (264)
.+.|.+++||||||+-.+ +.+.+.++|++||=. -+.||-+. .+...++++++.
T Consensus 91 ~~Id~Li~IGGdgS~~~a-~~l~e~~i~vigIPkTIDNDi~gtd~t~GfdTA---v~~~~~aid~i~ 153 (317)
T cd00763 91 HGIDALVVIGGDGSYMGA-MRLTEHGFPCVGLPGTIDNDIPGTDYTIGFDTA---LNTVVEAIDRIR 153 (317)
T ss_pred HCCCEEEEECCCHHHHHH-HHHHHCCCCEEEECCCCCCCCCCCCCCCCHHHH---HHHHHHHHHHHH
T ss_conf 299989995694589999-999974997797135446788887878688999---999999999999
No 36
>pfam00365 PFK Phosphofructokinase.
Probab=95.85 E-value=0.03 Score=34.36 Aligned_cols=41 Identities=27% Similarity=0.336 Sum_probs=32.3
Q ss_pred HHCCEEEEECCCHHHHHHHHHHHHCCCEEEEECC----------CCCCCCC
Q ss_conf 5577999987954899999997412872994153----------4332010
Q gi|254780754|r 35 EEADVIVVLGGDGFMLQSFHQSKEYDKPIYGMNC----------GSVGFLM 75 (264)
Q Consensus 35 ~~~Dlii~iGGDGT~L~a~~~~~~~~~PilGIn~----------G~lGFL~ 75 (264)
.+.|.+++|||||||-.|.+.....++|++||=. -+.||-+
T Consensus 91 ~~Id~li~IGGd~S~~~a~~L~~~~~i~vigIPkTIDNDl~~td~s~Gf~T 141 (279)
T pfam00365 91 HGIDALVVIGGDGSYTGADLLTSEHGFNCVGLPGTIDNDICGTDYTIGFDT 141 (279)
T ss_pred HCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCHHH
T ss_conf 489979996695689999999997299789820345689877767878899
No 37
>PRK06555 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Validated
Probab=95.77 E-value=0.033 Score=34.05 Aligned_cols=54 Identities=20% Similarity=0.301 Sum_probs=38.0
Q ss_pred HHCCEEEEECCCHHHHHHHHHH-----HHCCCEEEEECC----------CCCCCCCCCCCHHHHHHHHHHCC
Q ss_conf 5577999987954899999997-----412872994153----------43320104458789998664201
Q gi|254780754|r 35 EEADVIVVLGGDGFMLQSFHQS-----KEYDKPIYGMNC----------GSVGFLMNEYCIENLVERLSVAV 91 (264)
Q Consensus 35 ~~~Dlii~iGGDGT~L~a~~~~-----~~~~~PilGIn~----------G~lGFL~~~~~~~~~~~~l~~~~ 91 (264)
.+.|.+++||||||+-.|.+.+ .+.+++|+||=- -+.||-+. .+...++++.+.
T Consensus 111 ~gId~L~~IGGDgS~~~A~~La~~~~~~~~~i~VVGIPKTIDNDl~~tD~TfGF~TA---v~~a~~aid~l~ 179 (403)
T PRK06555 111 DGVDILHTIGGDDTNTTAADLAAYLAANGYDLTVVGLPKTIDNDVVPIRQSLGAWTA---AEQGARFFDNVV 179 (403)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCHHHH---HHHHHHHHHHHH
T ss_conf 299999998880599999999999997399952896145521788776888685889---999999999999
No 38
>COG0205 PfkA 6-phosphofructokinase [Carbohydrate transport and metabolism]
Probab=95.44 E-value=0.044 Score=33.26 Aligned_cols=54 Identities=28% Similarity=0.368 Sum_probs=39.5
Q ss_pred HHCCEEEEECCCHHHHHHHHHHHHCCCEEEEECC----------CCCCCCCCCCCHHHHHHHHHHCC
Q ss_conf 5577999987954899999997412872994153----------43320104458789998664201
Q gi|254780754|r 35 EEADVIVVLGGDGFMLQSFHQSKEYDKPIYGMNC----------GSVGFLMNEYCIENLVERLSVAV 91 (264)
Q Consensus 35 ~~~Dlii~iGGDGT~L~a~~~~~~~~~PilGIn~----------G~lGFL~~~~~~~~~~~~l~~~~ 91 (264)
...|.+|+||||||+--|........+|++|+=- =+.||.+. .+-..++++++.
T Consensus 93 ~gId~LvvIGGDGS~~gA~~Lae~~~i~vVGvPkTIDNDi~~td~tiGfdTA---~~~~~eaid~l~ 156 (347)
T COG0205 93 LGIDALVVIGGDGSYTGAALLAEEGGIPVVGVPKTIDNDISGTDFTIGFDTA---LETAVEAIDNLR 156 (347)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCHHHH---HHHHHHHHHHHH
T ss_conf 3998899978887389999999735986896688702788645267558889---999999999999
No 39
>PTZ00286 6-phospho-1-fructokinase; Provisional
Probab=95.04 E-value=0.057 Score=32.55 Aligned_cols=56 Identities=20% Similarity=0.398 Sum_probs=38.5
Q ss_pred HCCEEEEECCCHHHHHHHHHHHH-----CCCEEEEECC----------CCCCCCCCCCCHHHHHHHHHHCCCCC
Q ss_conf 57799998795489999999741-----2872994153----------43320104458789998664201243
Q gi|254780754|r 36 EADVIVVLGGDGFMLQSFHQSKE-----YDKPIYGMNC----------GSVGFLMNEYCIENLVERLSVAVECT 94 (264)
Q Consensus 36 ~~Dlii~iGGDGT~L~a~~~~~~-----~~~PilGIn~----------G~lGFL~~~~~~~~~~~~l~~~~~~~ 94 (264)
..|.+++||||||+--|...+.. .+++|+||=- =+.||=+ ..+...+++..+....
T Consensus 187 gId~LfvIGGDGTlrgA~~I~~e~~~Rgl~I~VVGIPKTIDNDI~~~D~TFGFdT---AVe~AteAI~~ah~EA 257 (486)
T PTZ00286 187 KINILFTVGGDGTQRGALKIYEEAKRRGENIAVFGVPKTIDNDLAFSHRTFGFQT---AVEQAVNAVRAAYAEA 257 (486)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHCCCCHHH---HHHHHHHHHHHHHHHH
T ss_conf 9998999788466889999999999717885066468543576410010024023---9999999999998875
No 40
>cd00363 PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to PFK family that includes ATP- and pyrophosphate (PPi)- dependent phosphofructokinases. Some members evolved by gene duplication and thus have a large C-terminal/N-terminal extension comprising a second PFK domain. Generally, ATP-PFKs are allosteric homotetramers, and PPi-PFKs are dimeric and nonallosteric except for plant PPi-PFKs which are allosteric heterotetramers.
Probab=94.96 E-value=0.09 Score=31.30 Aligned_cols=54 Identities=24% Similarity=0.367 Sum_probs=36.9
Q ss_pred HHCCEEEEECCCHHHHHHHHHHHH-----CCCEEEEECC----------CCCCCCCCCCCHHHHHHHHHHCC
Q ss_conf 557799998795489999999741-----2872994153----------43320104458789998664201
Q gi|254780754|r 35 EEADVIVVLGGDGFMLQSFHQSKE-----YDKPIYGMNC----------GSVGFLMNEYCIENLVERLSVAV 91 (264)
Q Consensus 35 ~~~Dlii~iGGDGT~L~a~~~~~~-----~~~PilGIn~----------G~lGFL~~~~~~~~~~~~l~~~~ 91 (264)
.+.|.+++||||||+-.|...... .++|++||=. -+.||-+. .+.+.++++++.
T Consensus 91 ~~Id~Li~IGGdgS~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDl~~td~t~Gf~TA---~~~~~~ai~~i~ 159 (338)
T cd00363 91 HGIDALVVIGGDGSYTGADLLTEEWPSKYQGFNVIGLPGTIDNDIKGTDYTIGFDTA---LKTIVEAIDRIR 159 (338)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCHHHH---HHHHHHHHHHHH
T ss_conf 299989997892699999999998885289951898410347899788548887999---999999999999
No 41
>PRK06830 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=94.87 E-value=0.064 Score=32.25 Aligned_cols=56 Identities=23% Similarity=0.427 Sum_probs=37.6
Q ss_pred HCCEEEEECCCHHHHHHHHHHHH-----CCCEEEEECC----------CCCCCCCCCCCHHHHHHHHHHCCCCC
Q ss_conf 57799998795489999999741-----2872994153----------43320104458789998664201243
Q gi|254780754|r 36 EADVIVVLGGDGFMLQSFHQSKE-----YDKPIYGMNC----------GSVGFLMNEYCIENLVERLSVAVECT 94 (264)
Q Consensus 36 ~~Dlii~iGGDGT~L~a~~~~~~-----~~~PilGIn~----------G~lGFL~~~~~~~~~~~~l~~~~~~~ 94 (264)
..|.+++||||||+-.|...+.. .+++|+||-- -+.||=+ ..+...++++.+....
T Consensus 171 gid~L~~IGGDGTl~gA~~i~~e~~~rgl~I~VvGIPKTIDNDi~~~d~sfGF~T---Av~~a~~ai~~~~~eA 241 (442)
T PRK06830 171 NINILFVIGGDGTLKGALKIAEEIARRNLKISVVGIPKTIDNDINFIQKSFGFET---AVEKATEAIACAHVEA 241 (442)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCEECHHH---HHHHHHHHHHHHHHHH
T ss_conf 9998999488027899999999999638994077456433477543031312461---9999999999998776
No 42
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include eukaryotic ATP-dependent phosphofructokinases. These have evolved from the bacterial PFKs by gene duplication and fusion events and exhibit complex allosteric behavior.
Probab=94.66 E-value=0.19 Score=29.18 Aligned_cols=71 Identities=13% Similarity=0.158 Sum_probs=44.8
Q ss_pred HHCCEEEEECCCHHHHHHHHHHH------HCCCEEEEECC-------C---CCCCCCCCCCHHHHHHHHHHCCCCCCC-E
Q ss_conf 55779999879548999999974------12872994153-------4---332010445878999866420124320-3
Q gi|254780754|r 35 EEADVIVVLGGDGFMLQSFHQSK------EYDKPIYGMNC-------G---SVGFLMNEYCIENLVERLSVAVECTFH-P 97 (264)
Q Consensus 35 ~~~Dlii~iGGDGT~L~a~~~~~------~~~~PilGIn~-------G---~lGFL~~~~~~~~~~~~l~~~~~~~~~-~ 97 (264)
...|-+|+|||||++..+..... ...+|++||-. | ++||-+ ....+.++++++..-.-. .
T Consensus 477 ~~Id~LivIGG~gs~~ga~~L~~~r~~y~~~~IP~v~IPaTIdNdv~GTd~siG~DT---AlN~i~~aiD~Ir~sA~ssh 553 (762)
T cd00764 477 YGIDGLIIVGGFEAYKGLLQLREAREQYEEFCIPMVLIPATVSNNVPGTDFSLGSDT---ALNALMKYCDRIKQSASGTK 553 (762)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCEECCCCCCCCCEEHHH---HHHHHHHHHHHHHHCCCCCC
T ss_conf 199889996680799999999975642434588679731213079978604015886---99999999987764142247
Q ss_pred EEEEEEECCCC
Q ss_conf 44345421244
Q gi|254780754|r 98 LKMTVFDYDNS 108 (264)
Q Consensus 98 ~~~~~~~~~~~ 108 (264)
....+++.-|.
T Consensus 554 ~RvfVVEvMGr 564 (762)
T cd00764 554 RRVFIVETMGG 564 (762)
T ss_pred CCEEEEEECCC
T ss_conf 75899994786
No 43
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include eukaryotic ATP-dependent phosphofructokinases. These have evolved from the bacterial PFKs by gene duplication and fusion events and exhibit complex allosteric behavior.
Probab=94.37 E-value=0.27 Score=28.33 Aligned_cols=68 Identities=18% Similarity=0.251 Sum_probs=41.4
Q ss_pred HHCCEEEEECCCHHHHHHH----------HHHHH------------CCCEEEEECC-------C---CCCCCCCCCCHHH
Q ss_conf 5577999987954899999----------99741------------2872994153-------4---3320104458789
Q gi|254780754|r 35 EEADVIVVLGGDGFMLQSF----------HQSKE------------YDKPIYGMNC-------G---SVGFLMNEYCIEN 82 (264)
Q Consensus 35 ~~~Dlii~iGGDGT~L~a~----------~~~~~------------~~~PilGIn~-------G---~lGFL~~~~~~~~ 82 (264)
...|-+|+|||||++--|- ..+.. ..+|++||=. | +.||-+ ..+.
T Consensus 96 ~gIdaLiVIGGDGSltGA~~fr~ew~~ll~eL~~~G~i~~~~~~~~~~l~ivGipgTIDNDi~gTD~TIG~dT---Aln~ 172 (762)
T cd00764 96 RGITNLCVIGGDGSLTGADLFRSEWPSLLEELVKDGKITEEEVAKYQHLNIVGMVGSIDNDFCGTDMTIGTDS---ALHR 172 (762)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCEEEECCCCCCCCCCCCCEEEHHH---HHHH
T ss_conf 0998899987953787777766554678999987276423443025787578843773468988755113884---9999
Q ss_pred HHHHHHHCCCCCCCEEEEEEEEC
Q ss_conf 99866420124320344345421
Q gi|254780754|r 83 LVERLSVAVECTFHPLKMTVFDY 105 (264)
Q Consensus 83 ~~~~l~~~~~~~~~~~~~~~~~~ 105 (264)
+.++++++..-..+....-+++.
T Consensus 173 i~eaiD~I~~TA~SH~R~fVVEV 195 (762)
T cd00764 173 ICEVVDAITTTAQSHQRTFVLEV 195 (762)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 99999876644764487799997
No 44
>smart00046 DAGKc Diacylglycerol kinase catalytic domain (presumed). Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. DAG can be produced from the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PIP2) by a phosphoinositide-specific phospholipase C and by the degradation of phosphatidylcholine (PC) by a phospholipase C or the concerted actions of phospholipase D and phosphatidate phosphohydrolase. This domain is presumed to be the catalytic domain. Bacterial homologues areknown.
Probab=93.34 E-value=0.22 Score=28.83 Aligned_cols=26 Identities=23% Similarity=0.350 Sum_probs=20.4
Q ss_pred HHCCEEEEECCCHHHHHHHHHHHHCC
Q ss_conf 55779999879548999999974128
Q gi|254780754|r 35 EEADVIVVLGGDGFMLQSFHQSKEYD 60 (264)
Q Consensus 35 ~~~Dlii~iGGDGT~L~a~~~~~~~~ 60 (264)
++.|.|+++|||||+=.++.-....+
T Consensus 48 ~~~~~vvv~GGDGTv~evlngl~~~~ 73 (124)
T smart00046 48 PKFDRVLVCGGDGTVGWVLNALDKRE 73 (124)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 53566999537751999999998543
No 45
>pfam00781 DAGK_cat Diacylglycerol kinase catalytic domain. Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. The catalytic domain is assumed from the finding of bacterial homologues. YegS is the Escherichia coli protein in this family whose crystal structure reveals an active site in the inter-domain cleft formed by four conserved sequence motifs, revealing a novel metal-binding site. The residues of this site are conserved across the family.
Probab=92.55 E-value=0.21 Score=28.94 Aligned_cols=36 Identities=25% Similarity=0.368 Sum_probs=25.2
Q ss_pred HCCEEEEECCCHHHHHHHHHHHHCCC----EEEEECCCCC
Q ss_conf 57799998795489999999741287----2994153433
Q gi|254780754|r 36 EADVIVVLGGDGFMLQSFHQSKEYDK----PIYGMNCGSV 71 (264)
Q Consensus 36 ~~Dlii~iGGDGT~L~a~~~~~~~~~----PilGIn~G~l 71 (264)
..|.++++|||||+=.++.-....+. |+-=|-.|+-
T Consensus 54 ~~d~vv~~GGDGTv~evvngl~~~~~~~~~plgiIP~GTg 93 (127)
T pfam00781 54 FKDLVVVAGGDGTVNEVLNGLAGREDRLKPPLGIIPLGTG 93 (127)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHCCCCCCCCEEEECCCCH
T ss_conf 8888999889757999999997468877897899248767
No 46
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=92.42 E-value=0.42 Score=27.09 Aligned_cols=65 Identities=17% Similarity=0.191 Sum_probs=44.0
Q ss_pred CEEEEEEECCCHHHHHHHHHHHHHCC-------CCCHHHCCEEEEECCCHHHH----------HHHHHHHHCCCEEEEEC
Q ss_conf 50599995599899999999998707-------88845577999987954899----------99999741287299415
Q gi|254780754|r 5 IQKIHFKASNAKKAQEAYDKFVKIYG-------NSTSEEADVIVVLGGDGFML----------QSFHQSKEYDKPIYGMN 67 (264)
Q Consensus 5 ~~ki~i~~~~~~~a~~~~~~l~~~~~-------~~~~~~~Dlii~iGGDGT~L----------~a~~~~~~~~~PilGIn 67 (264)
|+||.|+.......+.+.+.+.+.-- .+..+++|.+|.=| =|.+= .+...+...++|+|||=
T Consensus 1 Mk~I~Iid~G~~n~~si~~~l~~lg~~~~i~~~~~~l~~~d~iILPG-vG~~~~~~~~l~~~~~~i~~~~~~~~PiLGIC 79 (201)
T PRK13143 1 MKMIVIIDYGLGNLRSVSKGLERAGADVEITSDPEEILSADGIVLPG-VGAFGDVMENLGPLKETINEAVDDGKPFLGIC 79 (201)
T ss_pred CCEEEEEECCCCHHHHHHHHHHHCCCEEEECCCHHHHHHCCEEEECC-CCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 98899998897199999999998698599928999984379679738-88188999876515799999998699879980
Q ss_pred CCC
Q ss_conf 343
Q gi|254780754|r 68 CGS 70 (264)
Q Consensus 68 ~G~ 70 (264)
.|.
T Consensus 80 lGm 82 (201)
T PRK13143 80 LGM 82 (201)
T ss_pred HHH
T ss_conf 898
No 47
>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=90.19 E-value=0.92 Score=24.92 Aligned_cols=65 Identities=15% Similarity=0.211 Sum_probs=40.8
Q ss_pred CEEEEEEECCCHHHHHHHHHHHHHCC---------CCCHHHCCEEEEECCCHHHHH------------HHHHHHHCCCEE
Q ss_conf 50599995599899999999998707---------888455779999879548999------------999974128729
Q gi|254780754|r 5 IQKIHFKASNAKKAQEAYDKFVKIYG---------NSTSEEADVIVVLGGDGFMLQ------------SFHQSKEYDKPI 63 (264)
Q Consensus 5 ~~ki~i~~~~~~~a~~~~~~l~~~~~---------~~~~~~~Dlii~iGGDGT~L~------------a~~~~~~~~~Pi 63 (264)
||||+|+....-.-..+.+-+.+..- ..+.+++|. +++=|.|+|=. .+......++|+
T Consensus 1 M~kI~IiDyg~gNi~Sv~~al~~~~~~~~i~i~~~~~~i~~~d~-lIlPGVGsf~~~m~~L~~~~~~~~i~~~~~~~kpi 79 (208)
T PRK13146 1 MMSVAIIDYGSGNLRSAARALERAAPGADVTVTADPDAVRAADR-LVLPGVGAFADCMRGLRAVGGLREAVEEAAAGRPF 79 (208)
T ss_pred CCEEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHCCE-EEECCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCE
T ss_conf 98899993795589999999998579973999699999842887-89838897799999876407689999999839987
Q ss_pred EEECCCC
Q ss_conf 9415343
Q gi|254780754|r 64 YGMNCGS 70 (264)
Q Consensus 64 lGIn~G~ 70 (264)
|||=+|-
T Consensus 80 LGICLGm 86 (208)
T PRK13146 80 LGICVGM 86 (208)
T ss_pred EEEEEEE
T ss_conf 9888546
No 48
>PRK08250 glutamine amidotransferase; Provisional
Probab=90.16 E-value=1 Score=24.63 Aligned_cols=38 Identities=26% Similarity=0.424 Sum_probs=27.8
Q ss_pred CHHHCCEEEEECC----CHH-----H------HHHHHHHHHCCCEEEEECCCC
Q ss_conf 8455779999879----548-----9------999999741287299415343
Q gi|254780754|r 33 TSEEADVIVVLGG----DGF-----M------LQSFHQSKEYDKPIYGMNCGS 70 (264)
Q Consensus 33 ~~~~~Dlii~iGG----DGT-----~------L~a~~~~~~~~~PilGIn~G~ 70 (264)
..++.|.+|++|| +.+ . ++-++.+...++|+|||=+|+
T Consensus 42 ~~~~~d~liVlGGpms~~~~~e~~p~l~l~~E~~lir~a~~~~~PvlGIClG~ 94 (235)
T PRK08250 42 NADGFDMLIVLGGPQSPRTTREECPYFDSKAEQHLINQAITARKAVVGVCLGS 94 (235)
T ss_pred CCCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEHHH
T ss_conf 81025889997899877773212787470999999999998699889981677
No 49
>cd01746 GATase1_CTP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase (CTP). CTP is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. CTPs produce CTP from UTP and glutamine and regulate intracellular CTP levels through interactions with four ribonucleotide triphosphates. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. CTP is derived form UTP in three separate steps involving two active sites. In one active site, the UTP O4 oxygen is activated by Mg-ATP-dependent phosphorylation, followed by displacement of the resulting 4-phosphate moiety by ammonia. At a separate site, ammonia is generated via rate limiting glutamine hydrolysis (glutaminase) activity. A gated channel that spans between the glutamine hydrolysis and amidoligase active sites provides a path for ammonia diffusion. CTPs belong to th
Probab=89.94 E-value=0.38 Score=27.39 Aligned_cols=36 Identities=31% Similarity=0.493 Sum_probs=31.8
Q ss_pred HHHCCEEEEECCCHH-----HHHHHHHHHHCCCEEEEECCC
Q ss_conf 455779999879548-----999999974128729941534
Q gi|254780754|r 34 SEEADVIVVLGGDGF-----MLQSFHQSKEYDKPIYGMNCG 69 (264)
Q Consensus 34 ~~~~Dlii~iGGDGT-----~L~a~~~~~~~~~PilGIn~G 69 (264)
.+++|-|++-||=|. .+.|++.+...++|+|||=+|
T Consensus 53 L~~~dgilvpgGFG~rG~eGki~Ai~yARen~iPfLGIClG 93 (235)
T cd01746 53 LKGADGILVPGGFGIRGVEGKILAIKYARENNIPFLGICLG 93 (235)
T ss_pred HHCCCCEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 73069789578888776458899999999739972544103
No 50
>KOG4435 consensus
Probab=89.56 E-value=1.7 Score=23.22 Aligned_cols=84 Identities=15% Similarity=0.187 Sum_probs=40.6
Q ss_pred CCEEEEECCCHHHHHHHHHHHHC---CCEE--EEECCCCCC---CCCCCC----CHHHHHHHHHHCCCCCC-CEEEEEEE
Q ss_conf 77999987954899999997412---8729--941534332---010445----87899986642012432-03443454
Q gi|254780754|r 37 ADVIVVLGGDGFMLQSFHQSKEY---DKPI--YGMNCGSVG---FLMNEY----CIENLVERLSVAVECTF-HPLKMTVF 103 (264)
Q Consensus 37 ~Dlii~iGGDGT~L~a~~~~~~~---~~Pi--lGIn~G~lG---FL~~~~----~~~~~~~~l~~~~~~~~-~~~~~~~~ 103 (264)
.|.|+|.|||||+=..+--.... ..|| +.+....|+ -|.+-+ .+.++.++......++- ++....++
T Consensus 117 ~Dii~VaGGDGT~~eVVTGi~Rrr~~~~pv~~~P~G~~~l~~~s~l~~vfe~~d~V~h~~~a~~avikde~ksv~~fdv~ 196 (535)
T KOG4435 117 EDIIYVAGGDGTIGEVVTGIFRRRKAQLPVGFYPGGYDNLWLKSMLPSVFENSDDVRHACEAAMAVIKDEKKSVYAFDVT 196 (535)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHCHHHHCCCHHHHHHHHHHHHHHCCCCCCEEEEEEC
T ss_conf 77699956887277765788754566585454357645476654140454061578889998898861565525888860
Q ss_pred ECCCCCCCEEEEEEEEEEE
Q ss_conf 2124444201577534799
Q gi|254780754|r 104 DYDNSICAENILAINEVSI 122 (264)
Q Consensus 104 ~~~~~~~~~~~~AlNEi~i 122 (264)
. + +...+..++||++.-
T Consensus 197 ~-~-gs~l~P~fgl~glsw 213 (535)
T KOG4435 197 T-E-GSTLAPEFGLGGLSW 213 (535)
T ss_pred C-C-CCCCCCCCCCCCCCH
T ss_conf 5-7-870065103376650
No 51
>TIGR00337 PyrG CTP synthase; InterPro: IPR004468 CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5 upstream of enolase in both beta (Nitrosomonas europaea) and gamma (Escherichia coli) subdivisions of Proteobacterium .; GO: 0003883 CTP synthase activity, 0006221 pyrimidine nucleotide biosynthetic process.
Probab=89.46 E-value=0.41 Score=27.12 Aligned_cols=141 Identities=22% Similarity=0.264 Sum_probs=75.7
Q ss_pred EEEEEECCCHHHHHHHHHHHHHCC-CCCHHHCCEEEEECCCHH-----HHHHHHHHHHCCCEEEEECCC----------C
Q ss_conf 599995599899999999998707-888455779999879548-----999999974128729941534----------3
Q gi|254780754|r 7 KIHFKASNAKKAQEAYDKFVKIYG-NSTSEEADVIVVLGGDGF-----MLQSFHQSKEYDKPIYGMNCG----------S 70 (264)
Q Consensus 7 ki~i~~~~~~~a~~~~~~l~~~~~-~~~~~~~Dlii~iGGDGT-----~L~a~~~~~~~~~PilGIn~G----------~ 70 (264)
+|.|+.+..-+.+..-..-.+..+ .....+.|=|+|=||=|. .+.|++.+..-++|||||=+| +
T Consensus 343 ~i~Wi~s~d~e~~~~e~~k~~~l~~~~~~~~~DGILVPGGFG~RG~EGKI~Ai~yAREN~iPFLGICLGmQ~A~IEFARN 422 (571)
T TIGR00337 343 NIKWIDSEDLEEEEQEVDKAELLDGWNELSEVDGILVPGGFGERGVEGKIRAIKYARENNIPFLGICLGMQLAVIEFARN 422 (571)
T ss_pred EEEEECHHCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCCCCCCCHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHH
T ss_conf 68986210132001200135553224454306806836888976602478999998763697330217778889999765
Q ss_pred C-CCC-CC--CCCH------HHHHHHHHHCCC--CCCCE----------EE---EEEEECCC--CCCCEEEEEEEEEEEE
Q ss_conf 3-201-04--4587------899986642012--43203----------44---34542124--4442015775347997
Q gi|254780754|r 71 V-GFL-MN--EYCI------ENLVERLSVAVE--CTFHP----------LK---MTVFDYDN--SICAENILAINEVSII 123 (264)
Q Consensus 71 l-GFL-~~--~~~~------~~~~~~l~~~~~--~~~~~----------~~---~~~~~~~~--~~~~~~~~AlNEi~i~ 123 (264)
| |+. +| +|.. +.+...|..... ++..+ |+ ..+.-..+ -......|- .|.+..
T Consensus 423 V~Gl~~AnStEf~~~t~~p~~~Vv~LlpEq~d~~~~~~VRt~~~~lGGTMRLG~ypc~l~~~~eWt~a~klYg-~~~v~E 501 (571)
T TIGR00337 423 VLGLKGANSTEFDPETKYPKSPVVDLLPEQKDQNGNKEVRTEIEDLGGTMRLGLYPCILKPGSEWTLAFKLYG-KEEVYE 501 (571)
T ss_pred HCCCCCCCHHHCCCCCCCCCCCCEECCCCCCCCCCCEECCEEECCCCCEEECCCCCEEECCCCCHHHHHHHCC-CCEEEE
T ss_conf 3479888741246455777331114253222446760013010138724305872217717872326755337-867887
Q ss_pred ECCCCCCEEEEEEEEEEECCEEEEEEEECCEEEEEC
Q ss_conf 268764236788898766787653121035079822
Q gi|254780754|r 124 RKPGQNQLVQAAKLEVKVDDQVRLPELVCDGLVVST 159 (264)
Q Consensus 124 r~~~~~~~~~~~~~~v~id~~~~~~~~~~DGvivST 159 (264)
|.-| +|| +|+++ .+.+...|++||-
T Consensus 502 RHRH--------RYE--~Nn~~-~~~~E~~GL~vsG 526 (571)
T TIGR00337 502 RHRH--------RYE--VNNEY-REELENKGLIVSG 526 (571)
T ss_pred ECCC--------CCC--CCHHH-HHHHHHCCCEEEE
T ss_conf 1244--------412--27578-9899857958999
No 52
>PRK06490 glutamine amidotransferase; Provisional
Probab=88.69 E-value=1.5 Score=23.67 Aligned_cols=68 Identities=21% Similarity=0.400 Sum_probs=41.1
Q ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHC-----------CCC---CHHHCCEEEEECC-------CHHH---HHHHHHHHH
Q ss_conf 765059999559989999999999870-----------788---8455779999879-------5489---999999741
Q gi|254780754|r 3 RNIQKIHFKASNAKKAQEAYDKFVKIY-----------GNS---TSEEADVIVVLGG-------DGFM---LQSFHQSKE 58 (264)
Q Consensus 3 ~~~~ki~i~~~~~~~a~~~~~~l~~~~-----------~~~---~~~~~Dlii~iGG-------DGT~---L~a~~~~~~ 58 (264)
+..+|+.++-....+.-.....+.+.- ++. ..++.|.+|++|| |=.+ +..++.+..
T Consensus 9 ~~~k~vLviqH~~~e~pG~i~~~L~~~G~~~~i~r~~~gd~lP~~l~~~dglvVlGGpmsa~D~~p~l~~e~~~I~~~l~ 88 (243)
T PRK06490 9 RDKRPILIVLHQERSTPGRVGQLLRERGYPLDIRRPRLGDPLPETLEDHAGAVIFGGPMSANDPDDFIRREIDWISVPLK 88 (243)
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 78985799966899997299999997898589996789998999754605899928999989987179999999999998
Q ss_pred CCCEEEEECCCC
Q ss_conf 287299415343
Q gi|254780754|r 59 YDKPIYGMNCGS 70 (264)
Q Consensus 59 ~~~PilGIn~G~ 70 (264)
.++|+|||=+|.
T Consensus 89 ~~~P~LGICLGa 100 (243)
T PRK06490 89 ENKPFLGICLGA 100 (243)
T ss_pred CCCCEEEECHHH
T ss_conf 699889988849
No 53
>PRK07053 glutamine amidotransferase; Provisional
Probab=87.91 E-value=1.3 Score=23.95 Aligned_cols=66 Identities=20% Similarity=0.243 Sum_probs=41.1
Q ss_pred CEEEEEEECCCHHHHHHHHHHHHHCC-----------C---CCHHHCCEEEEECCCHH------------HHHHHHHHHH
Q ss_conf 50599995599899999999998707-----------8---88455779999879548------------9999999741
Q gi|254780754|r 5 IQKIHFKASNAKKAQEAYDKFVKIYG-----------N---STSEEADVIVVLGGDGF------------MLQSFHQSKE 58 (264)
Q Consensus 5 ~~ki~i~~~~~~~a~~~~~~l~~~~~-----------~---~~~~~~Dlii~iGGDGT------------~L~a~~~~~~ 58 (264)
|||+.++-....+.--....+.+.-+ + .+.++.|.+|++||-=. .+..++.+..
T Consensus 2 mk~ilvlqH~~~E~pG~i~~~l~~~g~~~~~~~~~~~~~~p~~~~~~d~livlGGpms~~d~~~~Pwl~~e~~lIr~a~~ 81 (235)
T PRK07053 2 MKTAVAIRHVAFEDLGSFEQVLGERGYRVRYVDVGVDDLEVLDALEPDLLVVLGGPIGVYDDALYPFLAPEIALLRQRLA 81 (235)
T ss_pred CCEEEEEECCCCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 95399996899889869999999789959999678898899996667999993899898877668558999999999998
Q ss_pred CCCEEEEECCCC
Q ss_conf 287299415343
Q gi|254780754|r 59 YDKPIYGMNCGS 70 (264)
Q Consensus 59 ~~~PilGIn~G~ 70 (264)
.++|+|||=.|+
T Consensus 82 ~~~PvLGIClG~ 93 (235)
T PRK07053 82 AGLPTLGICLGA 93 (235)
T ss_pred CCCCEEEECHHH
T ss_conf 699889984738
No 54
>PRK13180 consensus
Probab=87.88 E-value=1.9 Score=22.91 Aligned_cols=65 Identities=15% Similarity=0.255 Sum_probs=41.6
Q ss_pred CEEEEEEECCCHHHHHHHHHHHHHCC-------CCCHHHCCEEEEECCCHHHHHH------------HHHHHHCCCEEEE
Q ss_conf 50599995599899999999998707-------8884557799998795489999------------9997412872994
Q gi|254780754|r 5 IQKIHFKASNAKKAQEAYDKFVKIYG-------NSTSEEADVIVVLGGDGFMLQS------------FHQSKEYDKPIYG 65 (264)
Q Consensus 5 ~~ki~i~~~~~~~a~~~~~~l~~~~~-------~~~~~~~Dlii~iGGDGT~L~a------------~~~~~~~~~PilG 65 (264)
|+||+|+....-.-..+.+-+.+.-- .++.+++|.+|.= |=|++-.+ .+.....++|+||
T Consensus 1 MkkI~IiDyg~gNi~Sv~~al~~~g~~~~i~~~~~~~~~~d~lIlP-GVGsf~~~m~~L~~~~~~~~i~~~~~~gkpiLG 79 (209)
T PRK13180 1 MKRVVVLDYGSGNLRSAQRALERVGAEVEVTADPDAALNADGLVVP-GVGAFAACMAGLRAVGGDRIIGERLAAGRPVLG 79 (209)
T ss_pred CCEEEEEECCCCHHHHHHHHHHHCCCCEEEECCHHHHHHCCEEEEC-CCCCHHHHHHHHHHCCCHHHHHHHHHCCCCEEE
T ss_conf 9779999789438999999999869989997999999538968999-988557777765536919999999976998799
Q ss_pred ECCCC
Q ss_conf 15343
Q gi|254780754|r 66 MNCGS 70 (264)
Q Consensus 66 In~G~ 70 (264)
|=.|-
T Consensus 80 IClGM 84 (209)
T PRK13180 80 ICVGM 84 (209)
T ss_pred EEEHE
T ss_conf 84120
No 55
>PRK05380 pyrG CTP synthetase; Validated
Probab=87.54 E-value=0.63 Score=25.95 Aligned_cols=36 Identities=28% Similarity=0.459 Sum_probs=31.4
Q ss_pred HHHCCEEEEECCCHH-----HHHHHHHHHHCCCEEEEECCC
Q ss_conf 455779999879548-----999999974128729941534
Q gi|254780754|r 34 SEEADVIVVLGGDGF-----MLQSFHQSKEYDKPIYGMNCG 69 (264)
Q Consensus 34 ~~~~Dlii~iGGDGT-----~L~a~~~~~~~~~PilGIn~G 69 (264)
.+++|-|++-||=|. .+.|++.+...++|+|||=+|
T Consensus 341 L~~~dGIlVPGGFG~RGiEGKI~Ai~yARen~IPfLGICLG 381 (534)
T PRK05380 341 LKDVDGILVPGGFGERGIEGKILAIRYARENNIPFLGICLG 381 (534)
T ss_pred HHCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCCCEEHHHH
T ss_conf 63188299578766543156899999999819981101122
No 56
>PRK13175 consensus
Probab=87.38 E-value=1.4 Score=23.84 Aligned_cols=65 Identities=15% Similarity=0.249 Sum_probs=42.7
Q ss_pred CEEEEEEECCCHHHHHHHHHHHHHCC-------CCCHHHCCEEEEECCCHHH------------HHHHHHHHHCCCEEEE
Q ss_conf 50599995599899999999998707-------8884557799998795489------------9999997412872994
Q gi|254780754|r 5 IQKIHFKASNAKKAQEAYDKFVKIYG-------NSTSEEADVIVVLGGDGFM------------LQSFHQSKEYDKPIYG 65 (264)
Q Consensus 5 ~~ki~i~~~~~~~a~~~~~~l~~~~~-------~~~~~~~Dlii~iGGDGT~------------L~a~~~~~~~~~PilG 65 (264)
|+||+|+....-....+.+-+.+.-- ..+.+++|.+|.=| -|.+ ....+.....++|+||
T Consensus 1 M~kI~IiD~g~gn~~si~~al~~lg~~~~i~~~~~~i~~~d~lILPG-vGsf~~~~~~l~~~~l~~~i~~~~~~g~PiLG 79 (206)
T PRK13175 1 MPKIAVIDYGMGNLHSVCKALERLGAEPILTSDPADLLAADALILPG-VGAFDPAMQNLRSRGLIPPIKDAIASGKPFLG 79 (206)
T ss_pred CCEEEEEECCCCHHHHHHHHHHHCCCCEEEECCHHHHHCCCEEEECC-CCCCHHHHHHHHHCCCHHHHHHHHHCCCCEEE
T ss_conf 98799997997689999999998799899979989983289289689-98526788755531871689999856997799
Q ss_pred ECCCC
Q ss_conf 15343
Q gi|254780754|r 66 MNCGS 70 (264)
Q Consensus 66 In~G~ 70 (264)
|=.|.
T Consensus 80 IClGm 84 (206)
T PRK13175 80 ICLGL 84 (206)
T ss_pred EEHHH
T ss_conf 86786
No 57
>pfam00465 Fe-ADH Iron-containing alcohol dehydrogenase.
Probab=85.91 E-value=1.5 Score=23.58 Aligned_cols=21 Identities=33% Similarity=0.610 Sum_probs=16.4
Q ss_pred HCCEEEEECCCHHHHHHHHHHH
Q ss_conf 5779999879548999999974
Q gi|254780754|r 36 EADVIVVLGGDGFMLQSFHQSK 57 (264)
Q Consensus 36 ~~Dlii~iGGDGT~L~a~~~~~ 57 (264)
++|+||.||| |..+-+++...
T Consensus 79 ~~D~IIaiGG-GS~iD~aK~ia 99 (312)
T pfam00465 79 GADVIIAVGG-GSVIDTAKAIA 99 (312)
T ss_pred CCCEEEECCC-CCCCHHHHHHH
T ss_conf 9989998089-76124999999
No 58
>TIGR02478 6PF1K_euk 6-phosphofructokinase; InterPro: IPR009161 Members of this family are eukaryotic (with one exception) ATP-dependent 6-phosphofructokinases (2.7.1.11 from EC) in which two tandem copies of the phosphofructokinase are found . Members are found, often including several isozymes, in animals and fungi and in the bacterium Propionibacterium acnes KPA171202 (a human skin commensal). Phosphofructokinase (PFK) catalyses the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate, which then enters the Embden-Meyerhof pathway. PFK is a key regulatory enzyme in glycolysis. For additional information please see , , .; GO: 0003872 6-phosphofructokinase activity, 0006096 glycolysis, 0005737 cytoplasm.
Probab=85.81 E-value=1.1 Score=24.53 Aligned_cols=28 Identities=32% Similarity=0.517 Sum_probs=20.3
Q ss_pred HHHHHHHHHHCCCCCHHHCCEEEEECCCHHHHHHH
Q ss_conf 99999999870788845577999987954899999
Q gi|254780754|r 19 QEAYDKFVKIYGNSTSEEADVIVVLGGDGFMLQSF 53 (264)
Q Consensus 19 ~~~~~~l~~~~~~~~~~~~Dlii~iGGDGT~L~a~ 53 (264)
.+.++.|.+ ...|-+|||||||.+.-|=
T Consensus 84 LkAA~Nl~~-------~gId~LvViGGDGSLTGAd 111 (777)
T TIGR02478 84 LKAARNLIK-------RGIDALVVIGGDGSLTGAD 111 (777)
T ss_pred HHHHHHHHH-------CCCCEEEEECCCHHHHHHH
T ss_conf 999999887-------1994599988975688888
No 59
>PRK06186 hypothetical protein; Validated
Probab=85.60 E-value=0.91 Score=24.97 Aligned_cols=38 Identities=21% Similarity=0.295 Sum_probs=31.2
Q ss_pred CCHHHCCEEEEECCCHH-----HHHHHHHHHHCCCEEEEECCC
Q ss_conf 88455779999879548-----999999974128729941534
Q gi|254780754|r 32 STSEEADVIVVLGGDGF-----MLQSFHQSKEYDKPIYGMNCG 69 (264)
Q Consensus 32 ~~~~~~Dlii~iGGDGT-----~L~a~~~~~~~~~PilGIn~G 69 (264)
...+++|=|++.||=|. .+.|++.+...++|+|||=+|
T Consensus 49 ~~L~~~dgilv~pGfG~RG~eGki~Ai~yARen~iP~LGICLG 91 (229)
T PRK06186 49 EDLAGFDGIWCVPGSPYRNEDGALTAIRFARENGIPFLGTCGG 91 (229)
T ss_pred CHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEHHH
T ss_conf 0222599899899877765638999999998769987864277
No 60
>TIGR00725 TIGR00725 conserved hypothetical protein TIGR00725; InterPro: IPR005268 This family of conserved hypothetical proteins has no known function. .
Probab=84.69 E-value=1.5 Score=23.53 Aligned_cols=41 Identities=24% Similarity=0.359 Sum_probs=27.4
Q ss_pred HHCCEEEEECCC-HHHHHHHHHHHHCCCEEEEECCC-CCCCCC
Q ss_conf 557799998795-48999999974128729941534-332010
Q gi|254780754|r 35 EEADVIVVLGGD-GFMLQSFHQSKEYDKPIYGMNCG-SVGFLM 75 (264)
Q Consensus 35 ~~~Dlii~iGGD-GT~L~a~~~~~~~~~PilGIn~G-~lGFL~ 75 (264)
+.+|.+|++||. ||+-.++.-+.-..+-|+..++| --|.-+
T Consensus 97 ~S~d~~~~vGG~~GT~~Ei~~A~~l~~pvvv~~~tGsPtG~~~ 139 (176)
T TIGR00725 97 ESADVVVSVGGGYGTLIEILIAYELGGPVVVLLKTGSPTGAAS 139 (176)
T ss_pred EECCEEEEEECCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHH
T ss_conf 5265899962882589999999715898999807889842678
No 61
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=84.12 E-value=2.9 Score=21.80 Aligned_cols=65 Identities=11% Similarity=0.120 Sum_probs=44.5
Q ss_pred EEEEEEECCCHHHHHHHHHHHHHCC--------CCC-------HHHCCEEEEECCCHH------HHHHHHHHHHCCCEEE
Q ss_conf 0599995599899999999998707--------888-------455779999879548------9999999741287299
Q gi|254780754|r 6 QKIHFKASNAKKAQEAYDKFVKIYG--------NST-------SEEADVIVVLGGDGF------MLQSFHQSKEYDKPIY 64 (264)
Q Consensus 6 ~ki~i~~~~~~~a~~~~~~l~~~~~--------~~~-------~~~~Dlii~iGGDGT------~L~a~~~~~~~~~Pil 64 (264)
|||.++.+-..=+..+...+.+.-- +.. ..++|.||.=||=|+ .+...+.+...++|||
T Consensus 1 MrILiIDn~DSFT~ni~~~lr~lg~~v~V~~~d~~~~~~~~~~~~~~dgIILSpGPg~P~~~~~~~~~i~~~~~~~iPIL 80 (221)
T PRK07765 1 MRILVVDNYDSFVFNLVQYLGQLGVEAEVWRNDDVRLADEAAVAAGFDGVLLSPGPGTPERAGASIDMVRACAAAGTPLL 80 (221)
T ss_pred CEEEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHCCCCEEEECCCCCCHHHCCCCHHHHHHHHCCCCCEE
T ss_conf 97999938893399999999877991899989989988998763489989996999980116724889987532599889
Q ss_pred EECCCC
Q ss_conf 415343
Q gi|254780754|r 65 GMNCGS 70 (264)
Q Consensus 65 GIn~G~ 70 (264)
||=.|+
T Consensus 81 GIClG~ 86 (221)
T PRK07765 81 GVCLGH 86 (221)
T ss_pred EEEHHH
T ss_conf 870999
No 62
>pfam02350 Epimerase_2 UDP-N-acetylglucosamine 2-epimerase. This family consists of UDP-N-acetylglucosamine 2-epimerases EC:5.1.3.14 this enzyme catalyses the production of UDP-ManNAc from UDP-GlcNAc. Note that some of the enzymes is this family are bifunctional, in this instance Pfam matches only the N-terminal half of the protein suggesting that the additional C-terminal part (when compared to mono-functional members of this family) is responsible for the UPD-N-acetylmannosamine kinase activity of these enzymes. This hypothesis is further supported by the assumption that the C-terminal part of rat bifunctional UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine kinase is the kinase domain.
Probab=84.08 E-value=2.6 Score=22.13 Aligned_cols=57 Identities=18% Similarity=0.208 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHCCCCCHHHCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCC
Q ss_conf 999999999987078884557799998795489999999741287299415343320
Q gi|254780754|r 17 KAQEAYDKFVKIYGNSTSEEADVIVVLGGDGFMLQSFHQSKEYDKPIYGMNCGSVGF 73 (264)
Q Consensus 17 ~a~~~~~~l~~~~~~~~~~~~Dlii~iGGDGT~L~a~~~~~~~~~PilGIn~G~lGF 73 (264)
.++.+..-+.+....-.-.+||+++++|.--+.|-++-.+...++|+.-|..|-+.|
T Consensus 48 ~~~~~~~~i~~~~~~l~~~~PD~vlv~GDr~e~la~aiaa~~~~ipi~HiegG~RS~ 104 (346)
T pfam02350 48 LAKSTGRILIGLEDVLEEEKPDLVLVLGDTNETLAGALAAFYLRIPVAHVEAGLRSF 104 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEECCCCCC
T ss_conf 999999999999999998299999996897158899999998198489952687445
No 63
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=83.08 E-value=2.9 Score=21.76 Aligned_cols=39 Identities=23% Similarity=0.377 Sum_probs=34.2
Q ss_pred HHCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCC
Q ss_conf 557799998795489999999741287299415343320
Q gi|254780754|r 35 EEADVIVVLGGDGFMLQSFHQSKEYDKPIYGMNCGSVGF 73 (264)
Q Consensus 35 ~~~Dlii~iGGDGT~L~a~~~~~~~~~PilGIn~G~lGF 73 (264)
.+||++++.|.--+.|-++-.+...++|+.-|..|-+-|
T Consensus 87 ~kPD~VlV~GDr~e~la~Alaa~~~~Ipi~HiegG~rs~ 125 (363)
T cd03786 87 EKPDLVLVLGDTNETLAAALAAFKLGIPVAHVEAGLRSF 125 (363)
T ss_pred HCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEECCCCCC
T ss_conf 299999994888428799999998198189962643347
No 64
>pfam01761 DHQ_synthase 3-dehydroquinate synthase. The 3-dehydroquinate synthase EC:4.6.1.3 domain is present in isolation in various bacterial 3-dehydroquinate synthases and also present as a domain in the pentafunctional AROM polypeptide. 3-dehydroquinate (DHQ) synthase catalyses the formation of dehydroquinate (DHQ) and orthophosphate from 3-deoxy-D-arabino heptulosonic 7 phosphate. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids.
Probab=82.90 E-value=2.7 Score=21.96 Aligned_cols=34 Identities=24% Similarity=0.306 Sum_probs=23.9
Q ss_pred HHHCCEEEEECCCHHHHHHHHHHH---HCCCEEEEECC
Q ss_conf 455779999879548999999974---12872994153
Q gi|254780754|r 34 SEEADVIVVLGGDGFMLQSFHQSK---EYDKPIYGMNC 68 (264)
Q Consensus 34 ~~~~Dlii~iGGDGT~L~a~~~~~---~~~~PilGIn~ 68 (264)
....|++|.+|| |+.+-++..+. ..++|++-|-|
T Consensus 78 ~~r~d~iiaiGG-G~v~D~ak~~A~~~~rg~~~i~iPT 114 (310)
T pfam01761 78 LTRSDVIIALGG-GVIGDLAGFAAATYMRGIPFIQVPT 114 (310)
T ss_pred CCCCCEEEEECC-CCHHHHHHHHHHHHHCCCCEEEECC
T ss_conf 997754999549-6211689999999976997798670
No 65
>COG1810 Uncharacterized protein conserved in archaea [Function unknown]
Probab=82.24 E-value=4.1 Score=20.85 Aligned_cols=109 Identities=21% Similarity=0.186 Sum_probs=57.3
Q ss_pred HCCEEEEECCCHHHHHHHHHH---HHCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCE
Q ss_conf 577999987954899999997---41287299415343320104458789998664201243203443454212444420
Q gi|254780754|r 36 EADVIVVLGGDGFMLQSFHQS---KEYDKPIYGMNCGSVGFLMNEYCIENLVERLSVAVECTFHPLKMTVFDYDNSICAE 112 (264)
Q Consensus 36 ~~Dlii~iGGDGT~L~a~~~~---~~~~~PilGIn~G~lGFL~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (264)
++|++|++|=-.-+|.++-.. .....-|++.-.++ |+.- ++.+.-+..--.-..+.-+=.++.++
T Consensus 55 e~Di~va~~lHPDl~~~L~e~~~~~~~~alIvp~~~~~-g~rk------qL~~~~~~~g~e~~~p~p~C~Le~~~----- 122 (224)
T COG1810 55 EADIVVAYGLHPDLLLALPEKAAEGGVKALIVPAEPPE-GLRK------QLKEFCEELGVEFEAPEPFCSLEPNE----- 122 (224)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEECCCCH-HHHH------HHHHHHHHCCEEEECCCCCCCCCCCC-----
T ss_conf 87789995148507899999998579617998457973-4899------99987422360553687655678888-----
Q ss_pred EEEEEEEEEEEECCCCCCEEEEEEEEEEECCEEEEEEEECCEEEEECCCCHHHHHHH
Q ss_conf 157753479972687642367888987667876531210350798226650446752
Q gi|254780754|r 113 NILAINEVSIIRKPGQNQLVQAAKLEVKVDDQVRLPELVCDGLVVSTPIGSTAYNFS 169 (264)
Q Consensus 113 ~~~AlNEi~i~r~~~~~~~~~~~~~~v~id~~~~~~~~~~DGvivSTptGSTAY~lS 169 (264)
...+|+. +.+-..+ .++|++.+.. +... +|+-|-|-|||=|..-
T Consensus 123 -~p~i~~F-~e~FG~P-------~vevev~~~~-i~~V---~V~RsaPCGsT~~vAk 166 (224)
T COG1810 123 -NPHIDEF-AERFGKP-------EVEVEVENGK-IKDV---DVLRSAPCGSTWYVAK 166 (224)
T ss_pred -CHHHHHH-HHHCCCC-------EEEEEECCCE-EEEE---EEEECCCCCHHHHHHH
T ss_conf -8579999-9971995-------5999963991-8999---8873488720999999
No 66
>PRK10710 DNA-binding transcriptional regulator BaeR; Provisional
Probab=82.20 E-value=3.1 Score=21.58 Aligned_cols=90 Identities=21% Similarity=0.320 Sum_probs=55.7
Q ss_pred CCCCCEEEEEEECCCHHHHHHHHHHHHHCCC----C---------CHHHCCEEEEE----CCCHH-HHHHHHHHHHCCCE
Q ss_conf 9876505999955998999999999987078----8---------84557799998----79548-99999997412872
Q gi|254780754|r 1 MDRNIQKIHFKASNAKKAQEAYDKFVKIYGN----S---------TSEEADVIVVL----GGDGF-MLQSFHQSKEYDKP 62 (264)
Q Consensus 1 m~~~~~ki~i~~~~~~~a~~~~~~l~~~~~~----~---------~~~~~Dlii~i----GGDGT-~L~a~~~~~~~~~P 62 (264)
|+.+-.||.++.++..-++.+...|....-+ . ....+|++|.= ++||. +++.++.. .++|
T Consensus 6 ~~~~~~kILlVEDd~~l~~~l~~~L~~~g~~V~~a~~~~eal~~~~~~~~DliilDi~lp~~~Gl~l~~~lr~~--~~~p 83 (240)
T PRK10710 6 IDENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDEVLPYVRQTPPDLILLDLMLPGTDGLTLCREIRRF--SDIP 83 (240)
T ss_pred CCCCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHCC--CCCC
T ss_conf 99998879999298999999999999889999998999999999973799899987999888776321122115--7646
Q ss_pred EEEEC-------------CCCCCCCCCCCCHHHHHHHHHHCCC
Q ss_conf 99415-------------3433201044587899986642012
Q gi|254780754|r 63 IYGMN-------------CGSVGFLMNEYCIENLVERLSVAVE 92 (264)
Q Consensus 63 ilGIn-------------~G~lGFL~~~~~~~~~~~~l~~~~~ 92 (264)
|+=+- .|--.|+.-+++.+++..++.....
T Consensus 84 iI~lta~~~~~~~~~al~~GAddYl~KPf~~~eLlari~~~lr 126 (240)
T PRK10710 84 IVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILR 126 (240)
T ss_pred EEEECCCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHH
T ss_conf 8998167888999999986998760077653899999999984
No 67
>COG4069 Uncharacterized protein conserved in archaea [Function unknown]
Probab=81.32 E-value=1.9 Score=22.99 Aligned_cols=14 Identities=7% Similarity=0.178 Sum_probs=7.0
Q ss_pred CCHHHHHHHHHHHH
Q ss_conf 99899999999998
Q gi|254780754|r 14 NAKKAQEAYDKFVK 27 (264)
Q Consensus 14 ~~~~a~~~~~~l~~ 27 (264)
+++.++.+.+.|++
T Consensus 14 DSg~a~~il~lL~r 27 (367)
T COG4069 14 DSGYAEDILRLLSR 27 (367)
T ss_pred CCHHHHHHHHHHHH
T ss_conf 66889999999876
No 68
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=80.80 E-value=4.3 Score=20.67 Aligned_cols=39 Identities=28% Similarity=0.322 Sum_probs=33.3
Q ss_pred HHHCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCC
Q ss_conf 455779999879548999999974128729941534332
Q gi|254780754|r 34 SEEADVIVVLGGDGFMLQSFHQSKEYDKPIYGMNCGSVG 72 (264)
Q Consensus 34 ~~~~Dlii~iGGDGT~L~a~~~~~~~~~PilGIn~G~lG 72 (264)
.++||+|++.|..-|.|-++=.+...++||.-|-.|-+-
T Consensus 91 ~~kPD~VlV~GDt~stla~alaA~~~~Ipv~HveaGlrs 129 (365)
T TIGR03568 91 RLKPDLVVVLGDRFEMLAAAIAAALLNIPIAHIHGGEVT 129 (365)
T ss_pred HCCCCEEEEECCCCHHHHHHHHHHHHCCEEEEEECCCCC
T ss_conf 439989999489860779999999819818999678645
No 69
>COG0322 UvrC Nuclease subunit of the excinuclease complex [DNA replication, recombination, and repair]
Probab=80.73 E-value=4.6 Score=20.51 Aligned_cols=29 Identities=17% Similarity=0.190 Sum_probs=14.6
Q ss_pred CCCCEEEEEEEC-CCHHHHHHHHHHHHHCC
Q ss_conf 876505999955-99899999999998707
Q gi|254780754|r 2 DRNIQKIHFKAS-NAKKAQEAYDKFVKIYG 30 (264)
Q Consensus 2 ~~~~~ki~i~~~-~~~~a~~~~~~l~~~~~ 30 (264)
.++...+-++.. ...+|.-+-..+++.+.
T Consensus 57 v~~i~~iE~ivt~~E~EALlLE~nLIK~~~ 86 (581)
T COG0322 57 VENIADIEYIVTDTETEALLLENNLIKKHK 86 (581)
T ss_pred HHHHCCEEEEEECCHHHHHHHHHHHHHHHC
T ss_conf 974466369974887778888986777638
No 70
>CHL00188 hisH imidazole glycerol phosphate synthase subunit hisH; Provisional
Probab=79.93 E-value=4.9 Score=20.35 Aligned_cols=65 Identities=15% Similarity=0.145 Sum_probs=40.6
Q ss_pred CEEEEEEECCCHHHHHHHHHHHHHCC-------CCCHHHCCEEEEECCCHHHHHHH------------HHHHHCCCEEEE
Q ss_conf 50599995599899999999998707-------88845577999987954899999------------997412872994
Q gi|254780754|r 5 IQKIHFKASNAKKAQEAYDKFVKIYG-------NSTSEEADVIVVLGGDGFMLQSF------------HQSKEYDKPIYG 65 (264)
Q Consensus 5 ~~ki~i~~~~~~~a~~~~~~l~~~~~-------~~~~~~~Dlii~iGGDGT~L~a~------------~~~~~~~~PilG 65 (264)
||||+|+....-.-..+.+-+.+.-. ..+.+++|.+ ++=|-|.|=.+. +.+...++|+||
T Consensus 1 M~~I~Iid~g~GNi~Sv~~al~~~g~~~~ii~~~~~i~~~d~l-ILPGVGsf~~~m~~L~~~~l~~~i~~~~~~g~piLG 79 (210)
T CHL00188 1 MMKIGIIDYSMGNLHSVSRAIQQAGQQPCIINSESELAQVHAL-VLPGVGSFDLAMKKLEKKGLITPIKKWIAEGNPFIG 79 (210)
T ss_pred CCEEEEEECCCHHHHHHHHHHHHCCCCEEEECCHHHHHHCCEE-EECCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCEEE
T ss_conf 9779999588478999999999869987997999999648968-988867389999988630516999999976998699
Q ss_pred ECCCC
Q ss_conf 15343
Q gi|254780754|r 66 MNCGS 70 (264)
Q Consensus 66 In~G~ 70 (264)
|=+|-
T Consensus 80 ICLGm 84 (210)
T CHL00188 80 ICLGL 84 (210)
T ss_pred EEHHE
T ss_conf 84210
No 71
>PRK13173 consensus
Probab=79.89 E-value=4.9 Score=20.34 Aligned_cols=65 Identities=22% Similarity=0.303 Sum_probs=41.0
Q ss_pred CEEEEEEECCCHHHHHHHHHHHHHCC-------CCCHHHCCEEEEECCCHHHHHHHHHHHH-----------CCCEEEEE
Q ss_conf 50599995599899999999998707-------8884557799998795489999999741-----------28729941
Q gi|254780754|r 5 IQKIHFKASNAKKAQEAYDKFVKIYG-------NSTSEEADVIVVLGGDGFMLQSFHQSKE-----------YDKPIYGM 66 (264)
Q Consensus 5 ~~ki~i~~~~~~~a~~~~~~l~~~~~-------~~~~~~~Dlii~iGGDGT~L~a~~~~~~-----------~~~PilGI 66 (264)
|+||.|+....-.-..+.+-+.+.-. ..+.+++|.+| +=|-|+|-.+.+.... .+.|+|||
T Consensus 1 M~kI~IiDyg~gNi~Sv~~al~~lg~~~~i~~~~~~i~~~d~lI-LPGVGsF~~~m~~L~~~~l~~~i~~~~~~kpiLGI 79 (211)
T PRK13173 1 MTKIALLDYGMGNLHSASKALSAVGAEVSITNDPKVIAAADKIV-FPGVGAMRDCMAGMHEAGIDEVVRQAIFNKPVMAI 79 (211)
T ss_pred CCEEEEEECCCHHHHHHHHHHHHCCCCEEEECCHHHHHHCCEEE-ECCCCCHHHHHHHHHHCCHHHHHHHHHCCCCEEEE
T ss_conf 98799996894499999999998699889967999984389689-75778689999998862979999988629998998
Q ss_pred CCCC
Q ss_conf 5343
Q gi|254780754|r 67 NCGS 70 (264)
Q Consensus 67 n~G~ 70 (264)
=+|-
T Consensus 80 CLGM 83 (211)
T PRK13173 80 CVGM 83 (211)
T ss_pred EHHH
T ss_conf 1888
No 72
>PRK13525 glutamine amidotransferase subunit PdxT; Provisional
Probab=79.06 E-value=5.2 Score=20.17 Aligned_cols=64 Identities=20% Similarity=0.305 Sum_probs=36.7
Q ss_pred CEEEEEEECCCHHHHHHHHHHHHHCC--------CCCHHHCCEEEEECCC-HHHHHH---------HHHHHHCCCEEEEE
Q ss_conf 50599995599899999999998707--------8884557799998795-489999---------99974128729941
Q gi|254780754|r 5 IQKIHFKASNAKKAQEAYDKFVKIYG--------NSTSEEADVIVVLGGD-GFMLQS---------FHQSKEYDKPIYGM 66 (264)
Q Consensus 5 ~~ki~i~~~~~~~a~~~~~~l~~~~~--------~~~~~~~Dlii~iGGD-GT~L~a---------~~~~~~~~~PilGI 66 (264)
|+||++.+-.-. -.+..+-|.+ .+ .++..++|-+|-=||. ++|-+. ++.+...++|+|||
T Consensus 1 m~~IGvl~~qGn-~rs~~~aL~~-lG~~~~~v~~~~di~~ad~lILPGG~s~am~~ll~~~gl~~~i~~~i~~gkP~LGI 78 (191)
T PRK13525 1 MMKIGVLALQGA-VREHIAALEA-LGAEAVEVRRPEDLDEIDGLILPGGESTTMGKLLRDFGLLEPLREFIASGLPVFGT 78 (191)
T ss_pred CCEEEEEECCCC-HHHHHHHHHH-CCCCEEEECCHHHHHHCCEEEECCCCHHHHHHHHHHCCCHHHHHHHHHCCCCEEEE
T ss_conf 937999964788-9999999998-79978998999999539989978976589999999868689999999849985762
Q ss_pred CCCC
Q ss_conf 5343
Q gi|254780754|r 67 NCGS 70 (264)
Q Consensus 67 n~G~ 70 (264)
=.|-
T Consensus 79 ClGm 82 (191)
T PRK13525 79 CAGM 82 (191)
T ss_pred CHHH
T ss_conf 2212
No 73
>TIGR02477 PFKA_PPi diphosphate--fructose-6-phosphate 1-phosphotransferase; InterPro: IPR011183 Diphosphate--fructose-6-phosphate 1-phosphotransferase catalyses the addition of phosphate from diphosphate (PPi) to fructose 6-phosphate to give fructose 1,6-bisphosphate (2.7.1.90 from EC). The enzyme is also known as pyrophosphate-dependent phosphofructokinase. The usage of PPi-dependent enzymes in glycolysis presumably frees up ATP for other processes . IPR012828 from INTERPRO represents the ATP-dependent 6-phosphofructokinase enzyme contained within Phosphofructokinase. This entry contains primarily bacterial, plant alpha, and plant beta sequences. These may be dimeric nonallosteric enzymes (bacteria) or allosteric heterotetramers (plants) . For additional information please see , , , .; GO: 0005524 ATP binding, 0047334 diphosphate-fructose-6-phosphate 1-phosphotransferase activity, 0006096 glycolysis, 0005945 6-phosphofructokinase complex.
Probab=78.89 E-value=1.8 Score=23.02 Aligned_cols=45 Identities=22% Similarity=0.349 Sum_probs=33.8
Q ss_pred CCCHHHCCEEEEECCCHHHHHHHHHHH-----HCCCEEEEECC---C---------CCCCCC
Q ss_conf 888455779999879548999999974-----12872994153---4---------332010
Q gi|254780754|r 31 NSTSEEADVIVVLGGDGFMLQSFHQSK-----EYDKPIYGMNC---G---------SVGFLM 75 (264)
Q Consensus 31 ~~~~~~~Dlii~iGGDGT~L~a~~~~~-----~~~~PilGIn~---G---------~lGFL~ 75 (264)
.....+-|-+|+||||..=..||=.+. +.+++|+||=- | ++||=|
T Consensus 163 ~~k~l~LdgLVIIGGDdSNTnAA~LAEyF~~~~~~t~viGVPKTIDGDLKn~~iEtsFGFDT 224 (566)
T TIGR02477 163 TAKKLKLDGLVIIGGDDSNTNAALLAEYFAKKGLKTQVIGVPKTIDGDLKNQYIETSFGFDT 224 (566)
T ss_pred HHHHHCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCCCCCCCCCCCHH
T ss_conf 98760896489974798679999999999973899227864025472110271045876104
No 74
>KOG2387 consensus
Probab=78.60 E-value=1.8 Score=23.12 Aligned_cols=34 Identities=32% Similarity=0.428 Sum_probs=26.9
Q ss_pred HCCEEEEECCCHH-----HHHHHHHHHHCCCEEEEECCC
Q ss_conf 5779999879548-----999999974128729941534
Q gi|254780754|r 36 EADVIVVLGGDGF-----MLQSFHQSKEYDKPIYGMNCG 69 (264)
Q Consensus 36 ~~Dlii~iGGDGT-----~L~a~~~~~~~~~PilGIn~G 69 (264)
.+|-|++=||=|. ++.|++-+...++|+|||-+|
T Consensus 363 ~adGilvPGGFG~RGveG~i~Aak~ARen~iP~LGiCLG 401 (585)
T KOG2387 363 SADGILVPGGFGDRGVEGKILAAKWARENKIPFLGICLG 401 (585)
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEHH
T ss_conf 488289678665443057899999987649975763111
No 75
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=77.08 E-value=4.5 Score=20.58 Aligned_cols=29 Identities=10% Similarity=0.143 Sum_probs=15.9
Q ss_pred EEEECCEEEEEEEECCEEEEECCCCHHHHH
Q ss_conf 876678765312103507982266504467
Q gi|254780754|r 138 EVKVDDQVRLPELVCDGLVVSTPIGSTAYN 167 (264)
Q Consensus 138 ~v~id~~~~~~~~~~DGvivSTptGSTAY~ 167 (264)
.-..++++... .-.|.-+|-.+.||++.+
T Consensus 222 ~~~~~~~~~~~-~~~d~~~vyvslGt~~~~ 250 (406)
T COG1819 222 LGEAANELPYW-IPADRPIVYVSLGTVGNA 250 (406)
T ss_pred CCCCCCCCCCC-CCCCCCEEEEECCCCCCH
T ss_conf 77753346653-137996399955787537
No 76
>cd01741 GATase1_1 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=76.54 E-value=6.1 Score=19.72 Aligned_cols=38 Identities=26% Similarity=0.426 Sum_probs=28.7
Q ss_pred CHHHCCEEEEECCCHHH-----------HHHHHHHHHCCCEEEEECCCC
Q ss_conf 84557799998795489-----------999999741287299415343
Q gi|254780754|r 33 TSEEADVIVVLGGDGFM-----------LQSFHQSKEYDKPIYGMNCGS 70 (264)
Q Consensus 33 ~~~~~Dlii~iGGDGT~-----------L~a~~~~~~~~~PilGIn~G~ 70 (264)
+.++.|.+|+.||-... ...++.+...++|+|||=.|+
T Consensus 43 ~~~~~dgvii~Gg~~~~~~~~~pwi~~~~~~i~~~~~~~~PilGIC~G~ 91 (188)
T cd01741 43 DLDDYDGLVILGGPMSVDEDDYPWLKKLKELIRQALAAGKPVLGICLGH 91 (188)
T ss_pred CHHHCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECHHH
T ss_conf 8444088999699877786788669999999999998799999984689
No 77
>PRK10955 DNA-binding transcriptional regulator CpxR; Provisional
Probab=76.52 E-value=5.6 Score=19.97 Aligned_cols=87 Identities=14% Similarity=0.271 Sum_probs=56.1
Q ss_pred CEEEEEEECCCHHHHHHHHHHHHH-CCC---C--------CHHHCCEEEE----ECCCHH-HHHHHHHHHHCCCEEEEEC
Q ss_conf 505999955998999999999987-078---8--------8455779999----879548-9999999741287299415
Q gi|254780754|r 5 IQKIHFKASNAKKAQEAYDKFVKI-YGN---S--------TSEEADVIVV----LGGDGF-MLQSFHQSKEYDKPIYGMN 67 (264)
Q Consensus 5 ~~ki~i~~~~~~~a~~~~~~l~~~-~~~---~--------~~~~~Dlii~----iGGDGT-~L~a~~~~~~~~~PilGIn 67 (264)
|+||.++.++..-+..+...|... |.. . -.+.+|++|. =|+||. +++..|.. .++||+=+.
T Consensus 1 M~kILlVEDd~~l~~~l~~~L~~~G~~V~~a~~g~~al~~l~~~~DlvilDi~LP~~dG~~l~~~iR~~--~~~PII~lt 78 (232)
T PRK10955 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDSIDLLLLDVMMPKKNGIDTLKALRQT--HQTPVIMLT 78 (232)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEEECC--CCCCEEEEE
T ss_conf 988999969899999999999888999999899999999964898999991899988867230124407--888789980
Q ss_pred -------------CCCCCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf -------------34332010445878999866420124
Q gi|254780754|r 68 -------------CGSVGFLMNEYCIENLVERLSVAVEC 93 (264)
Q Consensus 68 -------------~G~lGFL~~~~~~~~~~~~l~~~~~~ 93 (264)
.|--.||+-+|+++++...+......
T Consensus 79 a~~~~~d~i~~l~~GADDYl~KPf~~~eL~ari~allrR 117 (232)
T PRK10955 79 ARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRR 117 (232)
T ss_pred CCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHCC
T ss_conf 556768899999769757633899989999999999761
No 78
>PRK01293 phosphoribosyl-dephospho-CoA transferase; Provisional
Probab=76.13 E-value=1.6 Score=23.36 Aligned_cols=84 Identities=15% Similarity=0.225 Sum_probs=44.6
Q ss_pred EECCCCHHHHHHHCCCEEEEECCCEEEEECC-CCCCHHHHHHCCC---CCCCEEEEEECCCCCCEEEEEECCE---E-CC
Q ss_conf 8226650446752298177408860586303-5433011110027---8841489997487887589998898---8-14
Q gi|254780754|r 157 VSTPIGSTAYNFSALGPILPLESRHLLLTPV-SPFKPRRWHGAIL---PNDVMIEIQVLEHKQRPVIATADRL---A-IE 228 (264)
Q Consensus 157 vSTptGSTAY~lSaGGpIv~p~~~~~~itpI-~p~~l~~~rplVl---~~~~~I~i~i~~~~~~~~~~~~D~~---~-~~ 228 (264)
.=-||||+||-++.|=|.+|++++.=++... .|.+-...+-++- ...-.|.+++..+. ++. | .+
T Consensus 112 ~WGvtGS~gfeLaTgi~~~h~~SDLDLlir~~~p~~~~~~~~l~~~l~~~~~rvD~qletP~--------Gg~AL~Ewa~ 183 (209)
T PRK01293 112 AWGVTGSAGFELATGIPVLHADSDLDLLIRAPQPLPRDQARELLQALDQAPCRVDLQLETPA--------GGVALREWAR 183 (209)
T ss_pred CCCCCCCHHHHHHHCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEECCC--------CCEEHHHHHC
T ss_conf 87676028999973886005787721788469955789999999997536884147997698--------7352998747
Q ss_pred CCCEEEEEECCCCCEEEEECCC
Q ss_conf 8778999987995189996488
Q gi|254780754|r 229 PVSRINVTQSSDITMRILSDSH 250 (264)
Q Consensus 229 ~~~~i~I~~s~~~~~~li~~~~ 250 (264)
+..+|.++.. + .-+|+.++-
T Consensus 184 ~~~~vLlKt~-~-Gp~Lv~dPW 203 (209)
T PRK01293 184 GAGRVLLKTA-D-GPRLVADPW 203 (209)
T ss_pred CCCCEEEECC-C-CCEEECCCC
T ss_conf 6662776428-9-886506988
No 79
>pfam00117 GATase Glutamine amidotransferase class-I.
Probab=75.81 E-value=3.1 Score=21.61 Aligned_cols=36 Identities=25% Similarity=0.441 Sum_probs=28.0
Q ss_pred HHCCEEEEECCCHHH------HHHHHHHHHCCCEEEEECCCC
Q ss_conf 557799998795489------999999741287299415343
Q gi|254780754|r 35 EEADVIVVLGGDGFM------LQSFHQSKEYDKPIYGMNCGS 70 (264)
Q Consensus 35 ~~~Dlii~iGGDGT~------L~a~~~~~~~~~PilGIn~G~ 70 (264)
.++|.||.-||-|.. +..++.+...++|+|||=.|.
T Consensus 40 ~~~d~iilspGpg~p~~~~~~~~~i~~~~~~~~PiLGIClG~ 81 (187)
T pfam00117 40 LNPDGIIISPGPGSPGDAGGAIEAIKELRENKIPILGICLGH 81 (187)
T ss_pred CCCCEEEECCCCCCHHHCCCHHHHHHHHHHCCCCEEEEEHHH
T ss_conf 599989991998611013458999999997799899998889
No 80
>pfam08459 UvrC_HhH_N UvrC Helix-hairpin-helix N-terminal. This domain is found in the C subunits of the bacterial and archaeal UvrABC system which catalyses nucleotide excision repair in a multi-step process. UvrC catalyses the first incision on the fourth or fifth phosphodiester bond 3' and on the eighth phosphodiester bond 5' from the damage that is to be excised. The domain described here is found to the N-terminus of a helix hairpin helix (pfam00633) motif and also co-occurs with the pfam01541 catalytic domain which is found at the N-terminus of the same proteins.
Probab=75.74 E-value=5.7 Score=19.91 Aligned_cols=65 Identities=17% Similarity=0.337 Sum_probs=39.7
Q ss_pred EEEEEEECCCHHHHHHHHHHHHHCC---CCCHHHCCEEEEECCCHHHHHHHHHHHH--CCCEEEEECCCC
Q ss_conf 0599995599899999999998707---8884557799998795489999999741--287299415343
Q gi|254780754|r 6 QKIHFKASNAKKAQEAYDKFVKIYG---NSTSEEADVIVVLGGDGFMLQSFHQSKE--YDKPIYGMNCGS 70 (264)
Q Consensus 6 ~ki~i~~~~~~~a~~~~~~l~~~~~---~~~~~~~Dlii~iGGDGT~L~a~~~~~~--~~~PilGIn~G~ 70 (264)
.|+.|-.....+-..+.+-+.++|. ++...-|||+++=||=|-+=.|.+.+.. .++|++|+--|.
T Consensus 45 Rkf~Ik~~~~dD~~~m~evl~RR~~~~~~~~~~~PDLilIDGGkgQl~~a~~~l~~~~~~i~vi~iaK~~ 114 (154)
T pfam08459 45 RRYNIKGTPGDDYASMREVLTRRFSRLLKEKLPLPDLILIDGGKGQLNAAKEVLEELGLDIPVIGLAKGE 114 (154)
T ss_pred HHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHCCCCCEEEEEEECC
T ss_conf 4323789999789999999999998654116899988997599899999999999859995299997356
No 81
>KOG3349 consensus
Probab=75.43 E-value=2.3 Score=22.36 Aligned_cols=50 Identities=24% Similarity=0.353 Sum_probs=31.2
Q ss_pred CCHHHCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 8845577999987954899999997412872994153433201044587899986642
Q gi|254780754|r 32 STSEEADVIVVLGGDGFMLQSFHQSKEYDKPIYGMNCGSVGFLMNEYCIENLVERLSV 89 (264)
Q Consensus 32 ~~~~~~Dlii~iGGDGT~L~a~~~~~~~~~PilGIn~G~lGFL~~~~~~~~~~~~l~~ 89 (264)
+++.++|+||+.+|-||.|.+.+. ++|.+-+--.+ ||| -..-++.+.|..
T Consensus 76 e~I~~AdlVIsHAGaGS~letL~l----~KPlivVvNd~---LMD-NHQ~ELA~qL~~ 125 (170)
T KOG3349 76 EDIRSADLVISHAGAGSCLETLRL----GKPLIVVVNDS---LMD-NHQLELAKQLAE 125 (170)
T ss_pred HHHHHCCEEEECCCCCHHHHHHHC----CCCEEEEECHH---HHH-HHHHHHHHHHHH
T ss_conf 887534588745874209999974----99779992757---644-489999999986
No 82
>PRK09065 glutamine amidotransferase; Provisional
Probab=74.88 E-value=6.8 Score=19.45 Aligned_cols=68 Identities=9% Similarity=0.155 Sum_probs=39.8
Q ss_pred CCCEEEEEEECCCHHH--HH-------HHHHHHHHCC-------------CCCHHHCCEEEEECCCHH----------HH
Q ss_conf 7650599995599899--99-------9999998707-------------888455779999879548----------99
Q gi|254780754|r 3 RNIQKIHFKASNAKKA--QE-------AYDKFVKIYG-------------NSTSEEADVIVVLGGDGF----------ML 50 (264)
Q Consensus 3 ~~~~ki~i~~~~~~~a--~~-------~~~~l~~~~~-------------~~~~~~~Dlii~iGGDGT----------~L 50 (264)
++|+||+|.-.+.+.. ++ ....+....+ -...+++|-+|+.|+=-. +.
T Consensus 1 m~m~ki~IL~~g~~~~~~~~~~G~y~~~f~~ll~~~~~~~~~~~v~~ge~~p~~~~~dg~iitGS~~~v~d~~pWi~~l~ 80 (238)
T PRK09065 1 MSMLPLLIIETGTPPPSIRARYGDFPHWIRVALGLAEQPVVVVDVFAGEPLPAPEDFAGVLITGSHAMVTDRAPWSERTA 80 (238)
T ss_pred CCCCEEEEEECCCCCHHHHHHCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHCCEEEEECCCCCCCCCCHHHHHHH
T ss_conf 99616999988989879998739989999998723698579996727989989578488999798520579988899999
Q ss_pred HHHHHHHHCCCEEEEECCCC
Q ss_conf 99999741287299415343
Q gi|254780754|r 51 QSFHQSKEYDKPIYGMNCGS 70 (264)
Q Consensus 51 ~a~~~~~~~~~PilGIn~G~ 70 (264)
..++.+...++|+|||=.|+
T Consensus 81 ~~ir~~~~~~~PilGICfGh 100 (238)
T PRK09065 81 DWLRQAAAAGMPLLGICYGH 100 (238)
T ss_pred HHHHHHHHCCCCEEEEEHHH
T ss_conf 99999987799999981778
No 83
>PRK13148 consensus
Probab=74.29 E-value=7 Score=19.35 Aligned_cols=65 Identities=20% Similarity=0.271 Sum_probs=41.7
Q ss_pred CEEEEEEECCCHHHHHHHHHHHHHC---------CCCCHHHCCEEEEECCCHHHHHHHHHHHH-----------CCCEEE
Q ss_conf 5059999559989999999999870---------78884557799998795489999999741-----------287299
Q gi|254780754|r 5 IQKIHFKASNAKKAQEAYDKFVKIY---------GNSTSEEADVIVVLGGDGFMLQSFHQSKE-----------YDKPIY 64 (264)
Q Consensus 5 ~~ki~i~~~~~~~a~~~~~~l~~~~---------~~~~~~~~Dlii~iGGDGT~L~a~~~~~~-----------~~~Pil 64 (264)
|++|+|+....-.-..+.+-+...- ...+.+++|. +++=|-|.|=.|.+.... .++|+|
T Consensus 1 M~~I~IIDyg~GNl~Sv~~al~~~g~~~~~~i~~~~~~i~~~d~-lILPGVGsF~~am~~L~~~~l~~~i~~~~~~kpiL 79 (225)
T PRK13148 1 MSTIAIVDYGMGNFHSVARALQHAAPDADIRICNRPEQIDAADR-VVFPGQGAMPDCMRTLNESGLRAAVERAAASKPLM 79 (225)
T ss_pred CCEEEEEECCCHHHHHHHHHHHHHCCCCCEEEECCHHHHHHCCE-EEECCCCCHHHHHHHHHHCCHHHHHHHHHCCCCEE
T ss_conf 98799997994499999999998578973999899999954997-99899788799999988648799999986389869
Q ss_pred EECCCC
Q ss_conf 415343
Q gi|254780754|r 65 GMNCGS 70 (264)
Q Consensus 65 GIn~G~ 70 (264)
||=+|-
T Consensus 80 GICLGM 85 (225)
T PRK13148 80 GVCVGE 85 (225)
T ss_pred EEEHHH
T ss_conf 982778
No 84
>pfam06506 PrpR_N Propionate catabolism activator. This domain is found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate.
Probab=72.11 E-value=7.9 Score=19.03 Aligned_cols=65 Identities=22% Similarity=0.267 Sum_probs=46.7
Q ss_pred EEEEEECCCHHHHHHHHHHHHHCCCCCHHHCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCHHHHHHH
Q ss_conf 59999559989999999999870788845577999987954899999997412872994153433201044587899986
Q gi|254780754|r 7 KIHFKASNAKKAQEAYDKFVKIYGNSTSEEADVIVVLGGDGFMLQSFHQSKEYDKPIYGMNCGSVGFLMNEYCIENLVER 86 (264)
Q Consensus 7 ki~i~~~~~~~a~~~~~~l~~~~~~~~~~~~Dlii~iGGDGT~L~a~~~~~~~~~PilGIn~G~lGFL~~~~~~~~~~~~ 86 (264)
.+-+..-...++.+.++++.+ +.+|++|+=||-+.+|+.. .++||+.|. .+..|+..+
T Consensus 10 ~i~v~~~~l~~av~~a~~~~~-------~g~dvIIsRGgta~~ir~~-----~~iPVv~I~----------~s~~Dil~a 67 (169)
T pfam06506 10 DVEVVDGGLEDAVEVARALVA-------EGVDVIISRGGTAAYLRDR-----LSVPVVEIK----------VSGFDLLRA 67 (169)
T ss_pred EEEEEECCHHHHHHHHHHHHH-------CCCCEEEECCHHHHHHHHH-----CCCCEEEEE----------CCHHHHHHH
T ss_conf 279997778999999999997-------7995999896589999985-----899889982----------788699999
Q ss_pred HHHCCCC
Q ss_conf 6420124
Q gi|254780754|r 87 LSVAVEC 93 (264)
Q Consensus 87 l~~~~~~ 93 (264)
|..+...
T Consensus 68 l~~a~~~ 74 (169)
T pfam06506 68 LARARRY 74 (169)
T ss_pred HHHHHHH
T ss_conf 9999975
No 85
>PRK05637 anthranilate synthase component II; Provisional
Probab=71.85 E-value=8 Score=18.99 Aligned_cols=65 Identities=15% Similarity=0.253 Sum_probs=42.8
Q ss_pred CEEEEEEECCCHHHHHHHHHHHHHCC-------CCCH-----HHCCEEEEECCCHH------HHHHHHHHHHCCCEEEEE
Q ss_conf 50599995599899999999998707-------8884-----55779999879548------999999974128729941
Q gi|254780754|r 5 IQKIHFKASNAKKAQEAYDKFVKIYG-------NSTS-----EEADVIVVLGGDGF------MLQSFHQSKEYDKPIYGM 66 (264)
Q Consensus 5 ~~ki~i~~~~~~~a~~~~~~l~~~~~-------~~~~-----~~~Dlii~iGGDGT------~L~a~~~~~~~~~PilGI 66 (264)
|+||.++.+...=...+...+...-. .... .++|.||.=+|=|+ ++...+.+. .++|||||
T Consensus 1 M~~ILlIDnyDSFT~Nl~~~l~~~g~~v~V~rn~~~~~~~~~~~pd~ivlSPGPg~P~d~g~~~~~~~~~~-~~iPILGI 79 (208)
T PRK05637 1 MTHVVLIDNHDSFVYNLVDAFAVAGYKCTVFRNTVPVETILAANPDLICLSPGPGYPADAGNMMALIERTL-GQIPLLGI 79 (208)
T ss_pred CCEEEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCCEEEECCCCCCHHHCCCHHHHHHHHH-CCCCEEEH
T ss_conf 97799994889759999999986799079996999999998519995999999999577757499999973-56982211
Q ss_pred CCCC
Q ss_conf 5343
Q gi|254780754|r 67 NCGS 70 (264)
Q Consensus 67 n~G~ 70 (264)
=+|+
T Consensus 80 CLGh 83 (208)
T PRK05637 80 CLGY 83 (208)
T ss_pred HHHH
T ss_conf 4778
No 86
>PRK13174 consensus
Probab=71.47 E-value=8.2 Score=18.94 Aligned_cols=65 Identities=18% Similarity=0.299 Sum_probs=41.3
Q ss_pred CEEEEEEECCCHHHHHHHHHHHHHCC-----CCC---HHHCCEEEEECCCHHHHHHHHHHHH-----------CCCEEEE
Q ss_conf 50599995599899999999998707-----888---4557799998795489999999741-----------2872994
Q gi|254780754|r 5 IQKIHFKASNAKKAQEAYDKFVKIYG-----NST---SEEADVIVVLGGDGFMLQSFHQSKE-----------YDKPIYG 65 (264)
Q Consensus 5 ~~ki~i~~~~~~~a~~~~~~l~~~~~-----~~~---~~~~Dlii~iGGDGT~L~a~~~~~~-----------~~~PilG 65 (264)
||+|+|+....-.-..+.+-+.+.-- ..+ .+++|.+| +-|=|.|-.+.+...+ .+.|+||
T Consensus 1 Mk~I~IiDyG~gNi~Sv~~al~~~g~~~~~i~~~~~~i~~~d~lI-lPGVGsf~~~m~~L~~~~~~~~i~~~~~~kpiLG 79 (212)
T PRK13174 1 MQTVAVIDYGMGNLHSVAKALEHVGAGRVLVTSDAAVIREADRVV-FPGVGAIRDCMAEIRRLGFDSLVREVSQDRPFLG 79 (212)
T ss_pred CCEEEEEECCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHCCEEE-ECCCCCHHHHHHHHHHCCHHHHHHHHHCCCCEEE
T ss_conf 988999958810799999999974998799838989996389799-6588868999999887696999999974998799
Q ss_pred ECCCC
Q ss_conf 15343
Q gi|254780754|r 66 MNCGS 70 (264)
Q Consensus 66 In~G~ 70 (264)
|=+|-
T Consensus 80 ICLGM 84 (212)
T PRK13174 80 ICVGM 84 (212)
T ss_pred EEHHH
T ss_conf 80889
No 87
>cd03135 GATase1_DJ-1 Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. DJ-1 is involved in multiple physiological processes including cancer, Parkinson's disease and male fertility. It is unclear how DJ-1 functions in these. DJ-1 has been shown to possess chaperone activity. DJ-1 is preferentially expressed in the testis and moderately in other tissues; it is induced together with genes involved in oxidative stress response. The Drosophila homologue (DJ-1A) plays an essential role in oxidative stress response and neuronal maintenance. Inhibition of DJ-1A function through RNAi, results in the cellular accumulation of reactive oxygen species, organismal hypersensitivity to oxidative stress, and dysfunction and degeneration of dopaminergic and photoreceptor neurons. DJ-1 has lacks enzymatic activity and the catalytic triad of typical GATase1 domains, however it does contain the highly
Probab=70.97 E-value=7 Score=19.37 Aligned_cols=41 Identities=17% Similarity=0.259 Sum_probs=32.5
Q ss_pred CCCHHHCCEEEEECCC---------HHHHHHHHHHHHCCCEEEEECCCCC
Q ss_conf 8884557799998795---------4899999997412872994153433
Q gi|254780754|r 31 NSTSEEADVIVVLGGD---------GFMLQSFHQSKEYDKPIYGMNCGSV 71 (264)
Q Consensus 31 ~~~~~~~Dlii~iGGD---------GT~L~a~~~~~~~~~PilGIn~G~l 71 (264)
+..++++|.+++-||- -.+++.++.+...++|+.+|-.|..
T Consensus 55 ~~~~~~~D~liipGG~~~~~~l~~~~~~~~~i~~~~~~~k~i~aiC~G~~ 104 (163)
T cd03135 55 DVNLDDYDAIVIPGGLPGAQNLADNEKLIKLLKEFNAKGKLIAAICAAPA 104 (163)
T ss_pred HCCCCCCCEEEECCCCCHHHHHHHCHHHHHHHHHHHHHCCEEEEECHHHH
T ss_conf 57820179899868982176776699999999999982994798645489
No 88
>PRK13805 bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional
Probab=70.81 E-value=8.5 Score=18.85 Aligned_cols=62 Identities=21% Similarity=0.229 Sum_probs=41.7
Q ss_pred EEEECCCHHHHHHHHHHHHHCCC---------------CC--H---------HHCCEEEEECCCHHHHHHHHHHHHCCCE
Q ss_conf 99955998999999999987078---------------88--4---------5577999987954899999997412872
Q gi|254780754|r 9 HFKASNAKKAQEAYDKFVKIYGN---------------ST--S---------EEADVIVVLGGDGFMLQSFHQSKEYDKP 62 (264)
Q Consensus 9 ~i~~~~~~~a~~~~~~l~~~~~~---------------~~--~---------~~~Dlii~iGGDGT~L~a~~~~~~~~~P 62 (264)
+|+-+.+|.+++...+..+...+ .. . .+.|+|++.||-|.+- ++. ..++|
T Consensus 141 aIIfspHP~a~~~~~~~~~ii~~a~~~aGaP~~li~~i~~ps~e~t~~LM~h~~v~lilaTGg~~mVk-aAy---sSGkP 216 (862)
T PRK13805 141 PIIFSFHPRAQKSSIAAAKIVLDAAVAAGAPKDIIQWIEEPSVEATNALMNHPGIALILATGGPGMVK-AAY---SSGKP 216 (862)
T ss_pred CEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCHHHHHHHHCCCCCCEEEECCCHHHHH-HHH---CCCCC
T ss_conf 38993584488899999999999999859891436553889989999985699944799559779999-997---07998
Q ss_pred EEEECCCCCCCC
Q ss_conf 994153433201
Q gi|254780754|r 63 IYGMNCGSVGFL 74 (264)
Q Consensus 63 ilGIn~G~lGFL 74 (264)
-+|+..|+.--+
T Consensus 217 aigvG~GN~p~~ 228 (862)
T PRK13805 217 ALGVGAGNTPVY 228 (862)
T ss_pred CEEECCCCCCEE
T ss_conf 165578987769
No 89
>PRK10701 DNA-binding transcriptional regulator RstA; Provisional
Probab=70.33 E-value=8.7 Score=18.78 Aligned_cols=85 Identities=18% Similarity=0.329 Sum_probs=49.8
Q ss_pred CEEEEEEECCCHHHHHHHHHHHHH-CCC------------CCHHHCCEEEE----ECCCHH-HHHHHHHHHHCCCEEEEE
Q ss_conf 505999955998999999999987-078------------88455779999----879548-999999974128729941
Q gi|254780754|r 5 IQKIHFKASNAKKAQEAYDKFVKI-YGN------------STSEEADVIVV----LGGDGF-MLQSFHQSKEYDKPIYGM 66 (264)
Q Consensus 5 ~~ki~i~~~~~~~a~~~~~~l~~~-~~~------------~~~~~~Dlii~----iGGDGT-~L~a~~~~~~~~~PilGI 66 (264)
|+||.++.++...+..+...|.+. |.. -....+|++|. =|+||. +++..|.. .+.||+=+
T Consensus 1 M~kILlVEDd~~l~~~l~~~L~~~g~~v~~a~~g~~a~~~~~~~~~DlvilDi~LP~~dG~~l~~~iR~~--~~~PiI~l 78 (240)
T PRK10701 1 MNTIVFVEDDAEVGSLIAAYLAKHDIDVTVEPRGDRAEETILREQPDLVLLDIMLPGKDGMTICRDLRPK--WSGPIVLL 78 (240)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCCEEEEECCCC--CCCCEEEE
T ss_conf 9989999799999999999998879999998999999999861799999992899767887876311025--89878999
Q ss_pred C-------------CCCCCCCCCCCCHHHHHHHHHHCC
Q ss_conf 5-------------343320104458789998664201
Q gi|254780754|r 67 N-------------CGSVGFLMNEYCIENLVERLSVAV 91 (264)
Q Consensus 67 n-------------~G~lGFL~~~~~~~~~~~~l~~~~ 91 (264)
- .|-=-||+-+|+++++...+....
T Consensus 79 ta~~~~~d~v~gl~~GADDYl~KPf~~~eL~aRi~a~l 116 (240)
T PRK10701 79 TSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHL 116 (240)
T ss_pred EECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH
T ss_conf 40575788999997688776417998799999999999
No 90
>PRK13144 consensus
Probab=69.31 E-value=9.1 Score=18.64 Aligned_cols=64 Identities=11% Similarity=0.216 Sum_probs=39.4
Q ss_pred EEEEEEECCCHHHHHHHHHHHHHCCC-------CCHHHCCEEEEECCCHHHHHHHHHHHH-----CCCEEEEECCCC
Q ss_conf 05999955998999999999987078-------884557799998795489999999741-----287299415343
Q gi|254780754|r 6 QKIHFKASNAKKAQEAYDKFVKIYGN-------STSEEADVIVVLGGDGFMLQSFHQSKE-----YDKPIYGMNCGS 70 (264)
Q Consensus 6 ~ki~i~~~~~~~a~~~~~~l~~~~~~-------~~~~~~Dlii~iGGDGT~L~a~~~~~~-----~~~PilGIn~G~ 70 (264)
|||+|+....-.-..+.+-+.+.--+ .+.+++|.+|. =|-|.|-.+...... .+.|+|||=.|-
T Consensus 1 mkI~IiDyg~GNi~Sv~~al~~~g~~~~i~~~~~~i~~~d~lIl-PGVGsf~~a~~~~~~~~~~i~~kpiLGIClGm 76 (190)
T PRK13144 1 VRVGVVDYTVGNIGSVLAALKRAGAEPVVVKEPEEANRVDALVL-PGVGTYEAAYALARSFKEVILEKPTLAICLGM 76 (190)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCCEEEECCHHHHHHCCEEEE-CCCCCHHHHHHHHHHHHHHHHCCCEEEEEHHH
T ss_conf 98999927936899999999984998699789999954897897-48885999999999999997479848987658
No 91
>PRK05467 putative hydroxylase; Provisional
Probab=68.50 E-value=9.5 Score=18.54 Aligned_cols=57 Identities=16% Similarity=0.162 Sum_probs=48.0
Q ss_pred CEEEEEEEEEEECCEEEEEEEECCEEEEECCCCHHHHHHHCCCEEEEECCCEEEEECCCC
Q ss_conf 236788898766787653121035079822665044675229817740886058630354
Q gi|254780754|r 130 QLVQAAKLEVKVDDQVRLPELVCDGLVVSTPIGSTAYNFSALGPILPLESRHLLLTPVSP 189 (264)
Q Consensus 130 ~~~~~~~~~v~id~~~~~~~~~~DGvivSTptGSTAY~lSaGGpIv~p~~~~~~itpI~p 189 (264)
..+.-+++-++.++- ++|.|--+++-+..|...+-+.||..|+.|..-.-.++|+-.
T Consensus 110 ~~RtDlS~TlfLs~p---~~YeGGEL~i~~~~~~~~~Kl~aG~~v~yPs~~lH~V~pVT~ 166 (226)
T PRK05467 110 RVRTDLSATLFLSDP---DDYDGGELVIEDTYGEHRVKLPAGDLVLYPSTSLHRVTPVTR 166 (226)
T ss_pred CEEEEEEEEEECCCC---CCCCCCEEEEECCCCCEEEECCCCCEEEECCCCCEEEEECCC
T ss_conf 044207999975895---446585599953886378655997589956987235652156
No 92
>pfam01965 DJ-1_PfpI DJ-1/PfpI family. The family includes the protease PfpI. This domain is also found in transcriptional regulators.
Probab=68.21 E-value=8.2 Score=18.92 Aligned_cols=41 Identities=24% Similarity=0.447 Sum_probs=31.3
Q ss_pred CCCHHHCCEEEEECCCHH---------HHHHHHHHHHCCCEEEEECCCCC
Q ss_conf 888455779999879548---------99999997412872994153433
Q gi|254780754|r 31 NSTSEEADVIVVLGGDGF---------MLQSFHQSKEYDKPIYGMNCGSV 71 (264)
Q Consensus 31 ~~~~~~~Dlii~iGGDGT---------~L~a~~~~~~~~~PilGIn~G~l 71 (264)
+...+++|.+++-||.|. ++..++.+...++++.+|-.|..
T Consensus 29 ~~~~~~~D~lvipGG~~~~~~l~~~~~~~~~l~~~~~~~~~i~aiC~g~~ 78 (141)
T pfam01965 29 DVNADDYDALVIPGGHAAAEDLRDDEKLVKFVKEFYEAGKPIAAICHGPV 78 (141)
T ss_pred HCCHHHCCEEEECCCCCHHHHHHHCHHHHHHHHHHHHHCCEEEEECHHHH
T ss_conf 88952499999969940676640199999999999983998999876689
No 93
>PRK11366 puuD gamma-glutamyl-gamma-aminobutyrate hydrolase; Provisional
Probab=67.74 E-value=8.6 Score=18.81 Aligned_cols=35 Identities=20% Similarity=0.278 Sum_probs=23.6
Q ss_pred HHCCEEEEECCC----------------------HHHHHHHHHHHHCCCEEEEECCC
Q ss_conf 557799998795----------------------48999999974128729941534
Q gi|254780754|r 35 EEADVIVVLGGD----------------------GFMLQSFHQSKEYDKPIYGMNCG 69 (264)
Q Consensus 35 ~~~Dlii~iGGD----------------------GT~L~a~~~~~~~~~PilGIn~G 69 (264)
+..|=++..||. -+=+..++.+...++|||||=-|
T Consensus 60 ~~lDGllltGG~~Di~P~~Yge~~~~~~~dp~RD~~E~~L~~~A~~~~~PiLGICRG 116 (254)
T PRK11366 60 PKLDGIYLPGSPSNVQPHLYGENGDEPDADPGRDLLSMALINAALERRIPIFAICRG 116 (254)
T ss_pred HHCCEEEECCCCCCCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECHH
T ss_conf 878989968998988942368898888888421299999999999859997986035
No 94
>PRK00758 GMP synthase subunit A; Validated
Probab=67.57 E-value=9.9 Score=18.42 Aligned_cols=61 Identities=21% Similarity=0.227 Sum_probs=40.3
Q ss_pred EEEEEECCCHHHHHHHHHHHHHCCC-------CCH----HHCCEEEEECCCH-----HHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 5999955998999999999987078-------884----5577999987954-----89999999741287299415343
Q gi|254780754|r 7 KIHFKASNAKKAQEAYDKFVKIYGN-------STS----EEADVIVVLGGDG-----FMLQSFHQSKEYDKPIYGMNCGS 70 (264)
Q Consensus 7 ki~i~~~~~~~a~~~~~~l~~~~~~-------~~~----~~~Dlii~iGGDG-----T~L~a~~~~~~~~~PilGIn~G~ 70 (264)
||.++.+-..-...+.+.+.+.-.. ... +++|-||.=||=| -....+ ...++|+|||=.|+
T Consensus 1 kIlviD~~dsft~ni~~~l~~~g~~v~v~~~~~~~~~i~~~~dgiilS~GP~~~~~~~~~~~i---~~~~iPiLGIClG~ 77 (184)
T PRK00758 1 KILVINNGGQYNHLIHRTLRYLGVDAKIIPNTTPLEEIKAEPDGIILSGGPEIERAGNCEEYL---LELDVPILGICLGH 77 (184)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCCCCCCCCCHHHHH---HHCCCCEEEEEHHH
T ss_conf 999998986389999999997899289995989899996389989988999833322069999---86599889971776
No 95
>cd01742 GATase1_GMP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. Glutamine amidotransferase (GATase) activity catalyse the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. GMP synthetase catalyses the amination of the nucleotide precursor xanthosine 5'-monophospahte to form GMP. GMP synthetase belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=66.79 E-value=6.3 Score=19.65 Aligned_cols=63 Identities=13% Similarity=0.098 Sum_probs=38.9
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCC-------CCH-----HHCCEEEEECCCH-----HHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 999955998999999999987078-------884-----5577999987954-----89999999741287299415343
Q gi|254780754|r 8 IHFKASNAKKAQEAYDKFVKIYGN-------STS-----EEADVIVVLGGDG-----FMLQSFHQSKEYDKPIYGMNCGS 70 (264)
Q Consensus 8 i~i~~~~~~~a~~~~~~l~~~~~~-------~~~-----~~~Dlii~iGGDG-----T~L~a~~~~~~~~~PilGIn~G~ 70 (264)
|.++.+...-...+.+.|.+.--. ... .++|-||.=||=| ......+...+.++|+|||=.|+
T Consensus 1 I~iiD~g~~~~~si~~~l~~~G~~~~vv~~~~~~~~~~~~~~dgvils~GP~~~~~~~~~~~~~~i~~~~~PilGIClG~ 80 (181)
T cd01742 1 ILILDFGSQYTHLIARRVRELGVYSEILPNTTPLEEIKLKNPKGIILSGGPSSVYEEDAPRVDPEIFELGVPVLGICYGM 80 (181)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHCCCCEEEEHHHH
T ss_conf 79999986389999999997799499996999989997349898998999998555798333099984799999985999
No 96
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=66.59 E-value=7.2 Score=19.29 Aligned_cols=33 Identities=30% Similarity=0.587 Sum_probs=29.5
Q ss_pred CCEEEEECCCHH-----HHHHHHHHHHCCCEEEEECCC
Q ss_conf 779999879548-----999999974128729941534
Q gi|254780754|r 37 ADVIVVLGGDGF-----MLQSFHQSKEYDKPIYGMNCG 69 (264)
Q Consensus 37 ~Dlii~iGGDGT-----~L~a~~~~~~~~~PilGIn~G 69 (264)
+|-|++-||=|. .+.|++.+...++|+|||-+|
T Consensus 344 ~dgIlVPGGFG~RG~eGkI~Ai~yAREn~iP~lGIClG 381 (533)
T COG0504 344 VDGILVPGGFGYRGVEGKIAAIRYARENNIPFLGICLG 381 (533)
T ss_pred CCEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEECHH
T ss_conf 88799689877675588999999998669986888566
No 97
>TIGR02490 flgF flagellar basal-body rod protein FlgF; InterPro: IPR012836 Members of this protein are FlgF, one of several homologous flagellar basal-body rod proteins in bacteria. This entry contains proteins only from the proteobacteria, and not in the epsilon subdivision (where the architecture of the related FlgE protein differs substantially from other lineages).; GO: 0006928 cell motility, 0043064 flagellum organization and biogenesis, 0044461 flagellin-based flagellum part.
Probab=65.95 E-value=10 Score=18.39 Aligned_cols=75 Identities=25% Similarity=0.321 Sum_probs=43.2
Q ss_pred EECCEEE-EECCCCHHHHHHH------CCCEEEEE-CCCEEEEECCCCCCHHHHHHCCCCC-CCEEEEEECCCCCCEEEE
Q ss_conf 1035079-8226650446752------29817740-8860586303543301111002788-414899974878875899
Q gi|254780754|r 150 LVCDGLV-VSTPIGSTAYNFS------ALGPILPL-ESRHLLLTPVSPFKPRRWHGAILPN-DVMIEIQVLEHKQRPVIA 220 (264)
Q Consensus 150 ~~~DGvi-vSTptGSTAY~lS------aGGpIv~p-~~~~~~itpI~p~~l~~~rplVl~~-~~~I~i~i~~~~~~~~~~ 220 (264)
+.|||.| |.+|.||-||-.. |-|-+.-- +.+++ .-.. -||+||+ .++|+|- . +-.+.+
T Consensus 80 ~~G~Gw~AVq~pdG~EAYTR~G~l~~da~G~L~t~~G~PVl--------G~gG-gPI~~P~P~~~~~Ig---~-DGTis~ 146 (254)
T TIGR02490 80 LQGDGWIAVQAPDGSEAYTRAGNLQVDANGTLQTASGHPVL--------GEGG-GPITIPPPYSKIEIG---A-DGTISV 146 (254)
T ss_pred ECCCCEEEEECCCCCEECEECCCEEECCCCCEEECCCCCEE--------ECCC-CEEEECCCCCEEEEC---C-CCEEEE
T ss_conf 64885289877995861114276101655413111787375--------0798-614536887648871---7-761888
Q ss_pred EE-CC--EECCCCCEEEEEE
Q ss_conf 98-89--8814877899998
Q gi|254780754|r 221 TA-DR--LAIEPVSRINVTQ 237 (264)
Q Consensus 221 ~~-D~--~~~~~~~~i~I~~ 237 (264)
+- |. ..+..+++|+.-+
T Consensus 147 ~p~G~~~~~~~~vgrlKLV~ 166 (254)
T TIGR02490 147 IPPGDPPNAVQEVGRLKLVK 166 (254)
T ss_pred ECCCCCCCCHHHCCCCCCCC
T ss_conf 65888975232403223458
No 98
>KOG1115 consensus
Probab=65.52 E-value=5.6 Score=19.96 Aligned_cols=34 Identities=26% Similarity=0.400 Sum_probs=22.7
Q ss_pred HHHCCEEEEECCCHHHHHHHHHHHHCCCEEEEEC
Q ss_conf 4557799998795489999999741287299415
Q gi|254780754|r 34 SEEADVIVVLGGDGFMLQSFHQSKEYDKPIYGMN 67 (264)
Q Consensus 34 ~~~~Dlii~iGGDGT~L~a~~~~~~~~~PilGIn 67 (264)
....|=||++||||.|=..++-+.....-+.|+|
T Consensus 215 ~~~yDGiv~VGGDG~FnEiL~G~llrtQ~~ag~~ 248 (516)
T KOG1115 215 LHTYDGIVAVGGDGFFNEILNGYLLRTQEVAGFR 248 (516)
T ss_pred HHHCCCEEEECCCHHHHHHHHHHHHHHHHHCCCC
T ss_conf 2011667995473269998766665126531855
No 99
>TIGR02638 lactal_redase lactaldehyde reductase; InterPro: IPR013460 The proteins in this entry form a distinct clade of iron-containing alcohol dehydrogenases. The genes encoding these proteins are generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in the production of lactaldehydes, which are reduced by these enzymes to 1,2 propanediol . These enzymes are also sometimes called 1,2 propanediol oxidoreductases. They are active under anaerobic conditions in E. coli, while being inactivated by reactive oxygen species under aerobic conditions . Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase..
Probab=65.26 E-value=11 Score=18.14 Aligned_cols=86 Identities=9% Similarity=0.110 Sum_probs=58.5
Q ss_pred EEEEEECCEEEEEEEECCEEEEECCCCHHHHHHHCCCEEEEECCCEEEEECC---CC-CCHHHHHHCCCCCCCEEEEEEC
Q ss_conf 8987667876531210350798226650446752298177408860586303---54-3301111002788414899974
Q gi|254780754|r 136 KLEVKVDDQVRLPELVCDGLVVSTPIGSTAYNFSALGPILPLESRHLLLTPV---SP-FKPRRWHGAILPNDVMIEIQVL 211 (264)
Q Consensus 136 ~~~v~id~~~~~~~~~~DGvivSTptGSTAY~lSaGGpIv~p~~~~~~itpI---~p-~~l~~~rplVl~~~~~I~i~i~ 211 (264)
.|=|-+.|..++.+-++=|+|++=|-=|+.++|--=++.=.+..+.+-+--= |+ .+. ..+|..++.+.++-+.
T Consensus 88 Dy~iAiGGGSp~DtAKAIgIi~~NPeF~d~~SLeGva~tk~~~vP~~AipTTaGTAAEvTi---NyVItDE~~~~K~Vcv 164 (380)
T TIGR02638 88 DYLIAIGGGSPIDTAKAIGIIVNNPEFSDVVSLEGVADTKKKGVPIIAIPTTAGTAAEVTI---NYVITDEENKRKFVCV 164 (380)
T ss_pred CEEEEECCCCCCCCHHHCEEECCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCHHHHHHH---CCEEECCCCCEEEEEE
T ss_conf 7799856897400030320000283845511045755312566615866887531444221---5147624545126887
Q ss_pred CCCCCEEEEEECC
Q ss_conf 8788758999889
Q gi|254780754|r 212 EHKQRPVIATADR 224 (264)
Q Consensus 212 ~~~~~~~~~~~D~ 224 (264)
++..=|..++.|.
T Consensus 165 Dp~~IP~vAv~D~ 177 (380)
T TIGR02638 165 DPHDIPDVAVVDA 177 (380)
T ss_pred CCCCCCEEEEECH
T ss_conf 5676780665473
No 100
>PRK10610 chemotaxis regulatory protein CheY; Provisional
Probab=65.19 E-value=11 Score=18.13 Aligned_cols=91 Identities=15% Similarity=0.285 Sum_probs=55.2
Q ss_pred CCCCCEEEEEEECCCHHHHHHHHHHHHHCCCC---------------CHHHCCEEEE----ECCCHH-HHHHHHHHHH-C
Q ss_conf 98765059999559989999999999870788---------------8455779999----879548-9999999741-2
Q gi|254780754|r 1 MDRNIQKIHFKASNAKKAQEAYDKFVKIYGNS---------------TSEEADVIVV----LGGDGF-MLQSFHQSKE-Y 59 (264)
Q Consensus 1 m~~~~~ki~i~~~~~~~a~~~~~~l~~~~~~~---------------~~~~~Dlii~----iGGDGT-~L~a~~~~~~-~ 59 (264)
|..+-.||.++ ++++...++...+.+..+-. ....+|+|++ =+-||. +++..|.... .
T Consensus 1 m~~k~lrILiv-DD~~~~r~~l~~~L~~~g~~~v~~a~~g~~al~~~~~~~~Dlil~D~~MP~~dG~el~~~ir~~~~~~ 79 (129)
T PRK10610 1 MADKELKFLVV-DDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGFGFVISDWNMPNMDGLELLKTIRADGAMS 79 (129)
T ss_pred CCCCCCEEEEE-ECCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHCCCCC
T ss_conf 98999899999-79899999999999986997899989999999999858999999818999998999999998577778
Q ss_pred CCEEEEECC-------------CCCCCCCCCCCHHHHHHHHHHCCC
Q ss_conf 872994153-------------433201044587899986642012
Q gi|254780754|r 60 DKPIYGMNC-------------GSVGFLMNEYCIENLVERLSVAVE 92 (264)
Q Consensus 60 ~~PilGIn~-------------G~lGFL~~~~~~~~~~~~l~~~~~ 92 (264)
.+||+-+.. |--|||.-+++.+++.+.+.++..
T Consensus 80 ~~Pii~~T~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~vl~ 125 (129)
T PRK10610 80 ALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFE 125 (129)
T ss_pred CCCEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
T ss_conf 9968999886899999999986998899898999999999999997
No 101
>cd03134 GATase1_PfpI_like A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704.
Probab=63.69 E-value=9.8 Score=18.45 Aligned_cols=42 Identities=19% Similarity=0.293 Sum_probs=32.0
Q ss_pred CCCHHHCCEEEEECCCHH--------HHHHHHHHHHCCCEEEEECCCCCC
Q ss_conf 888455779999879548--------999999974128729941534332
Q gi|254780754|r 31 NSTSEEADVIVVLGGDGF--------MLQSFHQSKEYDKPIYGMNCGSVG 72 (264)
Q Consensus 31 ~~~~~~~Dlii~iGGDGT--------~L~a~~~~~~~~~PilGIn~G~lG 72 (264)
+...++.|+++.-||-|. +++.++.+...++++-.|-.|...
T Consensus 57 ~~~~~~yD~ivlPGG~g~~~l~~~~~~~~~i~~~~~~~k~iaaIC~gp~~ 106 (165)
T cd03134 57 DVDADDYDALVIPGGTNPDKLRRDPDAVAFVRAFAEAGKPVAAICHGPWV 106 (165)
T ss_pred HCCHHHCCEEEECCCCCHHHHHHCHHHHHHHHHHHHHCCCEEEECCHHHH
T ss_conf 98962288899789858888852989999999999719929999875787
No 102
>KOG1169 consensus
Probab=63.66 E-value=8.1 Score=18.97 Aligned_cols=55 Identities=18% Similarity=0.303 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHCCCC--------C-HH---------HCCEEEEECCCHH---HHHHHHHHHHC------CCEEEEECC
Q ss_conf 89999999999870788--------8-45---------5779999879548---99999997412------872994153
Q gi|254780754|r 16 KKAQEAYDKFVKIYGNS--------T-SE---------EADVIVVLGGDGF---MLQSFHQSKEY------DKPIYGMNC 68 (264)
Q Consensus 16 ~~a~~~~~~l~~~~~~~--------~-~~---------~~Dlii~iGGDGT---~L~a~~~~~~~------~~PilGIn~ 68 (264)
.....++..+...++.. . +. ...-|+|-||||| +|.+...+... .+-|+...+
T Consensus 285 ~~G~~ll~~f~~lLnp~QVfdl~~~~~p~~gL~l~~~~~~~riLVcGGDGTvGWVL~~i~~~n~~~~~~~PpVAilPLGT 364 (634)
T KOG1169 285 QQGERLLRRFRYLLNPVQVFDLLKRGGPRPGLTLFRDVPDFRILVCGGDGTVGWVLGCIDKLNKQNAIPPPPVAILPLGT 364 (634)
T ss_pred CCCHHHHHHHHHHCCHHHEEECCCCCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCEEEEECCC
T ss_conf 34289999999765925289635677873467798748763499954787303356558876424557899738975678
Q ss_pred CC
Q ss_conf 43
Q gi|254780754|r 69 GS 70 (264)
Q Consensus 69 G~ 70 (264)
|+
T Consensus 365 GN 366 (634)
T KOG1169 365 GN 366 (634)
T ss_pred CC
T ss_conf 88
No 103
>TIGR01093 aroD 3-dehydroquinate dehydratase, type I; InterPro: IPR001381 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity, 0009073 aromatic amino acid family biosynthetic process.
Probab=62.91 E-value=5.9 Score=19.85 Aligned_cols=28 Identities=32% Similarity=0.497 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHH-C-CCEEEEECCCCCCCC
Q ss_conf 489999999741-2-872994153433201
Q gi|254780754|r 47 GFMLQSFHQSKE-Y-DKPIYGMNCGSVGFL 74 (264)
Q Consensus 47 GT~L~a~~~~~~-~-~~PilGIn~G~lGFL 74 (264)
=|+|++..++.. . ++|++++|+|..|-+
T Consensus 174 l~L~~~~~~~~~~~a~~p~i~~~MG~~G~i 203 (239)
T TIGR01093 174 LTLLEITLKVQEEYADKPLITMSMGDKGKI 203 (239)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEECCCCCHH
T ss_conf 999999987548760788688416884303
No 104
>PRK07085 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=62.88 E-value=7.7 Score=19.11 Aligned_cols=33 Identities=18% Similarity=0.314 Sum_probs=26.1
Q ss_pred HCCEEEEECCCHHHHHHHHHHH-----HCCCEEEEECC
Q ss_conf 5779999879548999999974-----12872994153
Q gi|254780754|r 36 EADVIVVLGGDGFMLQSFHQSK-----EYDKPIYGMNC 68 (264)
Q Consensus 36 ~~Dlii~iGGDGT~L~a~~~~~-----~~~~PilGIn~ 68 (264)
+.|-+|+||||++...|+-.+. ..++-|+|+=.
T Consensus 166 ~LdgLviiGGd~sntnAa~LAEyf~~~~~~t~VIGvPk 203 (557)
T PRK07085 166 KLDGLVIIGGDDSNTNAAILAEYFAKHNCKTQVIGVPK 203 (557)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCC
T ss_conf 99879997988721638999999998299837993352
No 105
>PRK10529 DNA-binding transcriptional activator KdpE; Provisional
Probab=61.85 E-value=13 Score=17.74 Aligned_cols=86 Identities=17% Similarity=0.295 Sum_probs=55.2
Q ss_pred CEEEEEEECCCHHHHHHHHHHHHHC-C---C---------CCHHHCCEEEEE----CCCHH-HHHHHHHHHHCCCEEEEE
Q ss_conf 5059999559989999999999870-7---8---------884557799998----79548-999999974128729941
Q gi|254780754|r 5 IQKIHFKASNAKKAQEAYDKFVKIY-G---N---------STSEEADVIVVL----GGDGF-MLQSFHQSKEYDKPIYGM 66 (264)
Q Consensus 5 ~~ki~i~~~~~~~a~~~~~~l~~~~-~---~---------~~~~~~Dlii~i----GGDGT-~L~a~~~~~~~~~PilGI 66 (264)
|+||.++.++..-++.+...|.... . . .....+|++|.= |+||. +++..|.. .++||+=+
T Consensus 1 M~~ILivEDd~~l~~~l~~~L~~~g~~V~~a~~~~~al~~~~~~~~DlviLDi~lP~~dG~~l~~~iR~~--~~~pII~l 78 (225)
T PRK10529 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEFIRDLRQW--SAIPVIVL 78 (225)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEEECC--CCCCEEEE
T ss_conf 9989999798999999999999889999997999999998611799899980788888876331000127--99878999
Q ss_pred C-------------CCCCCCCCCCCCHHHHHHHHHHCCC
Q ss_conf 5-------------3433201044587899986642012
Q gi|254780754|r 67 N-------------CGSVGFLMNEYCIENLVERLSVAVE 92 (264)
Q Consensus 67 n-------------~G~lGFL~~~~~~~~~~~~l~~~~~ 92 (264)
. .|--.||+-+|+.+++...+.....
T Consensus 79 ta~~~~~d~i~~l~~GADDYl~KPf~~~eL~aRi~a~lr 117 (225)
T PRK10529 79 SARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALR 117 (225)
T ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
T ss_conf 546898999999976987654078545999999999971
No 106
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=60.44 E-value=13 Score=17.59 Aligned_cols=33 Identities=24% Similarity=0.412 Sum_probs=26.4
Q ss_pred HHCCEEEEECCCHHHHHHHHHHHH-CCCEEEEECC
Q ss_conf 557799998795489999999741-2872994153
Q gi|254780754|r 35 EEADVIVVLGGDGFMLQSFHQSKE-YDKPIYGMNC 68 (264)
Q Consensus 35 ~~~Dlii~iGGDGT~L~a~~~~~~-~~~PilGIn~ 68 (264)
.++|+||.+|| |..+-+++-... .+.|++.|-+
T Consensus 83 ~~~D~IiavGG-GS~iD~AKaia~~~~~P~i~IPT 116 (366)
T PRK09423 83 NGCDVIIGIGG-GKTLDTAKAVADYLGVPVVIVPT 116 (366)
T ss_pred CCCCEEEEECC-HHHHHHHHHHHHHCCCCEEEECC
T ss_conf 49998999378-38877799999982899799568
No 107
>PRK06895 para-aminobenzoate synthase component II; Provisional
Probab=60.37 E-value=13 Score=17.58 Aligned_cols=64 Identities=14% Similarity=0.158 Sum_probs=43.3
Q ss_pred EEEEEEECCCHHHHHHHHHHHHHCC--------C---CCHHHCCEEEEECCCHH------HHHHHHHHHHCCCEEEEECC
Q ss_conf 0599995599899999999998707--------8---88455779999879548------99999997412872994153
Q gi|254780754|r 6 QKIHFKASNAKKAQEAYDKFVKIYG--------N---STSEEADVIVVLGGDGF------MLQSFHQSKEYDKPIYGMNC 68 (264)
Q Consensus 6 ~ki~i~~~~~~~a~~~~~~l~~~~~--------~---~~~~~~Dlii~iGGDGT------~L~a~~~~~~~~~PilGIn~ 68 (264)
+||.++.+-..=+..++..+.+.-. + ...+++|-||.=||=|. ++..++.+ ..++|||||=.
T Consensus 3 ~kILiiD~~dsfT~ni~~~lr~lg~~~~v~~~~~~~~~~~~~~~~IIlSpGPg~p~~~~~~~~~i~~~-~~~~PILGICl 81 (191)
T PRK06895 3 TNLLIINNHDSFTFNLVDLIRKLGVPMKVVNVEDLDLDEVENFSHILISPGPDVPRAYPQLFAMLERY-YQQKSILGVCL 81 (191)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHH-CCCCCEEEECH
T ss_conf 86999969884899999999877996999847848998985589699908999801052249999986-06898789829
Q ss_pred CC
Q ss_conf 43
Q gi|254780754|r 69 GS 70 (264)
Q Consensus 69 G~ 70 (264)
|+
T Consensus 82 G~ 83 (191)
T PRK06895 82 GH 83 (191)
T ss_pred HH
T ss_conf 99
No 108
>PRK13171 consensus
Probab=59.61 E-value=14 Score=17.50 Aligned_cols=65 Identities=11% Similarity=0.195 Sum_probs=40.7
Q ss_pred CEEEEEEECCCHHHHHHHHHHHHHCC-------CCCHHHCCEEEEECCCHHHHHHHHHHHH---------CCCEEEEECC
Q ss_conf 50599995599899999999998707-------8884557799998795489999999741---------2872994153
Q gi|254780754|r 5 IQKIHFKASNAKKAQEAYDKFVKIYG-------NSTSEEADVIVVLGGDGFMLQSFHQSKE---------YDKPIYGMNC 68 (264)
Q Consensus 5 ~~ki~i~~~~~~~a~~~~~~l~~~~~-------~~~~~~~Dlii~iGGDGT~L~a~~~~~~---------~~~PilGIn~ 68 (264)
|++|+|+....-.-..+.+-+.+.-. ....+++|.+ ++=|=|.|=.+.+.... .++|+|||=.
T Consensus 1 M~~I~IiDyg~gNi~Sv~~al~~lg~~~~ii~~~~~i~~~~~l-IlPGVGsf~~~m~~L~~~~~~~~i~~~~~piLGICl 79 (200)
T PRK13171 1 MTDVALIDAGGANLGSVRYALERLGVEARVVRDAAGLQGAQRV-ILPGVGAAPEAMARLRAQGLIEPLRELQVPLIGICL 79 (200)
T ss_pred CCEEEEEECCCCHHHHHHHHHHHCCCCEEEECCHHHHHCCCEE-EECCCCCHHHHHHHHHHCCCHHHHHHCCCCEEEEEH
T ss_conf 9879999689517999999999849987997899999529989-989988789999999872126789864997355607
Q ss_pred CC
Q ss_conf 43
Q gi|254780754|r 69 GS 70 (264)
Q Consensus 69 G~ 70 (264)
|-
T Consensus 80 Gm 81 (200)
T PRK13171 80 GM 81 (200)
T ss_pred HH
T ss_conf 65
No 109
>cd03140 GATase1_PfpI_3 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=59.21 E-value=13 Score=17.72 Aligned_cols=38 Identities=21% Similarity=0.385 Sum_probs=30.1
Q ss_pred CHHHCCEEEEECCCH-------HHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 845577999987954-------89999999741287299415343
Q gi|254780754|r 33 TSEEADVIVVLGGDG-------FMLQSFHQSKEYDKPIYGMNCGS 70 (264)
Q Consensus 33 ~~~~~Dlii~iGGDG-------T~L~a~~~~~~~~~PilGIn~G~ 70 (264)
..++.|+++.-||+. .++..++++...++++-+|=+|-
T Consensus 57 ~~~~~D~lvlPGG~~~~~~~~~~l~~~l~~~~~~gk~iaaIC~g~ 101 (170)
T cd03140 57 PPEDYDLLILPGGDSWDNPEAPDLAGLVRQALKQGKPVAAICGAT 101 (170)
T ss_pred CCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECHHH
T ss_conf 902177899868875100249999999999987499099986558
No 110
>pfam01487 DHquinase_I Type I 3-dehydroquinase. Type I 3-dehydroquinase, (3-dehydroquinate dehydratase or DHQase.) Catalyses the cis-dehydration of 3-dehydroquinate via a covalent imine intermediate giving dehydroshikimate. Dehydroquinase functions in the shikimate pathway which is involved in the biosynthesis of aromatic amino acids. Type II 3-dehydroquinase catalyses the trans-dehydration of 3-dehydroshikimate see pfam01220.
Probab=59.17 E-value=9.1 Score=18.64 Aligned_cols=39 Identities=28% Similarity=0.290 Sum_probs=17.2
Q ss_pred HHHHHHHHHHCCCEEE-EECCCCC-CCCCCCCCHHHHHHHHHHCC
Q ss_conf 9999999741287299-4153433-20104458789998664201
Q gi|254780754|r 49 MLQSFHQSKEYDKPIY-GMNCGSV-GFLMNEYCIENLVERLSVAV 91 (264)
Q Consensus 49 ~L~a~~~~~~~~~Pil-GIn~G~l-GFL~~~~~~~~~~~~l~~~~ 91 (264)
.++.++.. .++|++ .+.+-.- |.+ +.+.+...+.+..+.
T Consensus 44 ~l~~l~~~--~~~PiI~T~R~~~eGG~~--~~~~~~~~~ll~~~~ 84 (222)
T pfam01487 44 QLSALRES--TGLPIIFTVRTKSEGGRF--EGSEEEYLELLKEAL 84 (222)
T ss_pred HHHHHHHH--CCCCEEEEECCHHHCCCC--CCCHHHHHHHHHHHH
T ss_conf 99999983--899779996877888998--899999999999999
No 111
>PRK13172 consensus
Probab=58.92 E-value=14 Score=17.42 Aligned_cols=64 Identities=17% Similarity=0.203 Sum_probs=40.9
Q ss_pred CEEEEEEECCCHHHHHHHHHHHHHCC-------CCCHHHCCEEEEECCCHHHHHHHHHH------------HHCCCEEEE
Q ss_conf 50599995599899999999998707-------88845577999987954899999997------------412872994
Q gi|254780754|r 5 IQKIHFKASNAKKAQEAYDKFVKIYG-------NSTSEEADVIVVLGGDGFMLQSFHQS------------KEYDKPIYG 65 (264)
Q Consensus 5 ~~ki~i~~~~~~~a~~~~~~l~~~~~-------~~~~~~~Dlii~iGGDGT~L~a~~~~------------~~~~~PilG 65 (264)
|++|+++....-.-..+.+-+.+.-. .++.+++|.+| +=|-|+|=.+.+.. ...++|+||
T Consensus 1 M~~I~IIDyG~GNi~Sv~~al~~lg~~~~i~~~~~~i~~~d~lI-lPGVGsF~~~m~~L~~~~l~~~i~~~~~~~kpiLG 79 (213)
T PRK13172 1 MSSVSIVDYGVGNLLSVARAFQYFDASVNLVSTPEEIMSADRLV-LPGVGAFEDGMKGLTTLNFIEPIKQFARSGKPFLG 79 (213)
T ss_pred CCEEEEEECCCHHHHHHHHHHHHCCCCEEEECCHHHHHHCCEEE-ECCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCEEE
T ss_conf 98799997894299999999998699889977999983389789-76878469999988723863789998765995799
Q ss_pred ECCC
Q ss_conf 1534
Q gi|254780754|r 66 MNCG 69 (264)
Q Consensus 66 In~G 69 (264)
|=+|
T Consensus 80 ICLG 83 (213)
T PRK13172 80 ICLG 83 (213)
T ss_pred EEHH
T ss_conf 8576
No 112
>cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is
Probab=57.73 E-value=12 Score=17.89 Aligned_cols=36 Identities=22% Similarity=0.396 Sum_probs=26.4
Q ss_pred HCCEEEEECCCHH------HHHHHHHHHHCCCEEEEECCCCC
Q ss_conf 5779999879548------99999997412872994153433
Q gi|254780754|r 36 EADVIVVLGGDGF------MLQSFHQSKEYDKPIYGMNCGSV 71 (264)
Q Consensus 36 ~~Dlii~iGGDGT------~L~a~~~~~~~~~PilGIn~G~l 71 (264)
++|-||.=||=|+ .+...+.+...++|||||=.|+-
T Consensus 39 ~p~giIlS~GPg~p~~~~~~~~~~~~~~~~~iPILGIClG~Q 80 (178)
T cd01744 39 DPDGIFLSNGPGDPALLDEAIKTVRKLLGKKIPIFGICLGHQ 80 (178)
T ss_pred CCCEEEECCCCCCHHHHCCHHHHHHHHHHCCCCEEEECHHHH
T ss_conf 999799899999957734449999999746998899812178
No 113
>TIGR02518 EutH_ACDH acetaldehyde dehydrogenase (acetylating); InterPro: IPR013357 Aldehyde dehydrogenases (1.2.1.3 from EC and 1.2.1.5 from EC) are enzymes which oxidize a wide variety of aliphatic and aromatic aldehydes using NAD(P) as a cofactor. In eukaryotes, at least twenty distinct aldehyde dehydrogenase families have been classified . Many aldehyde dehydrogenases have also been found in prokaryotic species. A glutamic acid and a cysteine residue have been implicated in the catalytic activity of mammalian aldehyde dehydrogenase, though these residues are not necessarily conserved in all the enzymes of this family. The acetaldehyde dehydrogenase family (1.2.1.10 from EC) of bacterial enzymes catalyse the formation of acetyl-CoA from acetaldehyde in the degradation of phenols, cresols and catechol . Proteins in this entry occur in bacterial species and are annotated as probable acetaldehyde dehydrogenases, though this function has not been experimentally verified..
Probab=57.25 E-value=12 Score=17.79 Aligned_cols=79 Identities=15% Similarity=0.239 Sum_probs=48.8
Q ss_pred EEEECCCHHHHHHHHHHHHHCCC--------------------------CCHHHCCEEEEECCCHHHHHHHHHHHHCCCE
Q ss_conf 99955998999999999987078--------------------------8845577999987954899999997412872
Q gi|254780754|r 9 HFKASNAKKAQEAYDKFVKIYGN--------------------------STSEEADVIVVLGGDGFMLQSFHQSKEYDKP 62 (264)
Q Consensus 9 ~i~~~~~~~a~~~~~~l~~~~~~--------------------------~~~~~~Dlii~iGGDGT~L~a~~~~~~~~~P 62 (264)
+|+-|++|.|++..=+-.+...+ -+-+|.-+|++-||.+ |.|||-. .+.|
T Consensus 134 aIv~SPHP~A~kc~i~tv~l~~~AA~~AGaP~g~I~~~t~ptiegTneLMK~kdts~IlATGG~a-MVkAAYS---SG~P 209 (528)
T TIGR02518 134 AIVFSPHPNAKKCIIETVKLIRKAAEEAGAPEGAIGCITVPTIEGTNELMKNKDTSLILATGGEA-MVKAAYS---SGTP 209 (528)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHCCCCEEEEEECCCHH-HHHHECC---CCCC
T ss_conf 05766971067899999999999998547986722101024224555540246806899607702-5330003---7786
Q ss_pred EEEECCCCCCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf 9941534332010445878999866420124
Q gi|254780754|r 63 IYGMNCGSVGFLMNEYCIENLVERLSVAVEC 93 (264)
Q Consensus 63 ilGIn~G~lGFL~~~~~~~~~~~~l~~~~~~ 93 (264)
=+||..|+==-+.+ ..-|+.+++.++..-
T Consensus 210 AIGVGpGNgPAyIe--~~Anv~~Av~~Il~S 238 (528)
T TIGR02518 210 AIGVGPGNGPAYIE--RTANVKKAVRKILDS 238 (528)
T ss_pred CCCCCCCCCCCCCC--CCCCHHHHHHHHHCC
T ss_conf 21217778601011--567878999887402
No 114
>cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit. IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA.
Probab=57.17 E-value=13 Score=17.60 Aligned_cols=11 Identities=27% Similarity=0.516 Sum_probs=5.0
Q ss_pred EEEECCCHHHH
Q ss_conf 99987954899
Q gi|254780754|r 40 IVVLGGDGFML 50 (264)
Q Consensus 40 ii~iGGDGT~L 50 (264)
+|++.|||+++
T Consensus 72 Vv~~~GDG~~~ 82 (178)
T cd02008 72 VVAVIGDSTFF 82 (178)
T ss_pred EEEEECCHHHH
T ss_conf 79995762776
No 115
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=56.74 E-value=15 Score=17.19 Aligned_cols=39 Identities=18% Similarity=0.174 Sum_probs=32.6
Q ss_pred HHCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCC
Q ss_conf 557799998795489999999741287299415343320
Q gi|254780754|r 35 EEADVIVVLGGDGFMLQSFHQSKEYDKPIYGMNCGSVGF 73 (264)
Q Consensus 35 ~~~Dlii~iGGDGT~L~a~~~~~~~~~PilGIn~G~lGF 73 (264)
++||++++.|.--|.|.++--+...++||--|-.|-+-|
T Consensus 91 ~kPD~VlVhGDT~t~lA~alaa~~~~IpV~HvEAGlRt~ 129 (383)
T COG0381 91 EKPDLVLVHGDTNTTLAGALAAFYLKIPVGHVEAGLRTG 129 (383)
T ss_pred HCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEECCCCCC
T ss_conf 299989991785368899999998689368874254447
No 116
>TIGR01225 hutH histidine ammonia-lyase; InterPro: IPR005921 Histidine ammonia-lyase deaminates histidine to urocanic acid, the first step in histidine degradation. It is closely related to phenylalanine ammonia-lyase. ; GO: 0004397 histidine ammonia-lyase activity, 0006548 histidine catabolic process, 0005737 cytoplasm.
Probab=56.66 E-value=7.4 Score=19.22 Aligned_cols=27 Identities=37% Similarity=0.471 Sum_probs=16.3
Q ss_pred HHHCCCEEEEECCCCCCCCCC-CCCHHHH
Q ss_conf 741287299415343320104-4587899
Q gi|254780754|r 56 SKEYDKPIYGMNCGSVGFLMN-EYCIENL 83 (264)
Q Consensus 56 ~~~~~~PilGIn~G~lGFL~~-~~~~~~~ 83 (264)
....+.||||||||= |-|.+ .+..++.
T Consensus 43 i~~~~~~vYGvNTGF-G~l~~~~I~~~~~ 70 (529)
T TIGR01225 43 IVAGDKTVYGVNTGF-GKLASVRIDREDL 70 (529)
T ss_pred HHCCCCEEEEEECCC-CCHHHHCCCHHHH
T ss_conf 854897156411550-0123301657789
No 117
>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=56.57 E-value=16 Score=17.18 Aligned_cols=63 Identities=16% Similarity=0.292 Sum_probs=37.2
Q ss_pred EEEEECCCHHHHHHHHHHHHHCC-------CCCHHHCCEEEEEC-CC-HH---------HHHHHHHHHHCCCEEEEECCC
Q ss_conf 99995599899999999998707-------88845577999987-95-48---------999999974128729941534
Q gi|254780754|r 8 IHFKASNAKKAQEAYDKFVKIYG-------NSTSEEADVIVVLG-GD-GF---------MLQSFHQSKEYDKPIYGMNCG 69 (264)
Q Consensus 8 i~i~~~~~~~a~~~~~~l~~~~~-------~~~~~~~Dlii~iG-GD-GT---------~L~a~~~~~~~~~PilGIn~G 69 (264)
|+|+.......+.+.+.+.+.-- .++.+++|.+|.=| |- ++ +..+.+.+...++|+|||=.|
T Consensus 1 I~IiD~G~~ni~si~~~l~~lg~~~~ii~~~~~l~~~d~iIlPGvG~f~~~~~~l~~~~~~~~i~~~~~~~~PiLGIClG 80 (198)
T cd01748 1 IAIIDYGMGNLRSVANALERLGAEVIITSDPEEILSADKLILPGVGAFGDAMANLRERGLIEALKEAIASGKPFLGICLG 80 (198)
T ss_pred CEEEECCCCHHHHHHHHHHHCCCCEEEECCHHHHHHCCEEEECCCCCCHHHHHHHHHCCHHHHHHHHHHCCCCEEEEEEE
T ss_conf 99997697789999999998799299979999983089899878874034444410038199999998769968999811
Q ss_pred C
Q ss_conf 3
Q gi|254780754|r 70 S 70 (264)
Q Consensus 70 ~ 70 (264)
.
T Consensus 81 ~ 81 (198)
T cd01748 81 M 81 (198)
T ss_pred E
T ss_conf 4
No 118
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=56.01 E-value=13 Score=17.73 Aligned_cols=51 Identities=14% Similarity=0.193 Sum_probs=31.6
Q ss_pred HHHHHCCCCCHHHCCEEEEEC---CCHHHHHHHHHHHHCCCEEEEECCCCCCCC
Q ss_conf 999870788845577999987---954899999997412872994153433201
Q gi|254780754|r 24 KFVKIYGNSTSEEADVIVVLG---GDGFMLQSFHQSKEYDKPIYGMNCGSVGFL 74 (264)
Q Consensus 24 ~l~~~~~~~~~~~~Dlii~iG---GDGT~L~a~~~~~~~~~PilGIn~G~lGFL 74 (264)
++.++|.+-....+|++=..| .=.-.++-.+.....+.|.+++|+|..|.+
T Consensus 117 ~l~~~~~~~~~~~aDivKia~~A~~~~D~~~l~~~~~~~~~p~Iai~MGe~G~l 170 (477)
T PRK09310 117 DIPQLYNEMLASQADYYKIAVSSTSSTDLLNIIQQKRSLPENTTVLCMGNHGIP 170 (477)
T ss_pred HHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCCEE
T ss_conf 399999999860799899984038777899999999728998699971778702
No 119
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=55.84 E-value=16 Score=17.10 Aligned_cols=33 Identities=21% Similarity=0.334 Sum_probs=28.6
Q ss_pred HCCEEEEECCCHHHHHHHHHHHHCCCEEEEECC
Q ss_conf 577999987954899999997412872994153
Q gi|254780754|r 36 EADVIVVLGGDGFMLQSFHQSKEYDKPIYGMNC 68 (264)
Q Consensus 36 ~~Dlii~iGGDGT~L~a~~~~~~~~~PilGIn~ 68 (264)
.+|.+|.+.|||-|..+++.+...++.|..+..
T Consensus 99 ~~D~~vLvSgD~Df~p~v~~lr~~Gk~V~v~~~ 131 (149)
T cd06167 99 RIDTIVLVSGDSDFVPLVERLRELGKRVIVVGF 131 (149)
T ss_pred CCCEEEEEECCHHHHHHHHHHHHCCCEEEEEEC
T ss_conf 999899995777279999999987999999974
No 120
>COG4787 FlgF Flagellar basal body rod protein [Cell motility and secretion]
Probab=53.77 E-value=13 Score=17.68 Aligned_cols=55 Identities=24% Similarity=0.190 Sum_probs=30.8
Q ss_pred ECCE-EEEECCCCHHHHHHHCCCEEEEECCCEEEEECCCCCCHHHHHHCCCCCCCEEEEE
Q ss_conf 0350-7982266504467522981774088605863035433011110027884148999
Q gi|254780754|r 151 VCDG-LVVSTPIGSTAYNFSALGPILPLESRHLLLTPVSPFKPRRWHGAILPNDVMIEIQ 209 (264)
Q Consensus 151 ~~DG-vivSTptGSTAY~lSaGGpIv~p~~~~~~itpI~p~~l~~~rplVl~~~~~I~i~ 209 (264)
.+|| +-|-+|.||-||-...+=-|=.-+.-.++=-|+- -.. -|+.+|+..+|+|-
T Consensus 83 q~DGwlaVq~~dG~EaYTRnG~~qI~a~g~lTiqg~pVi---G~g-gpI~vPp~~~v~I~ 138 (251)
T COG4787 83 QGDGWLAVQDADGSEAYTRNGNIQIDATGQLTIQGHPVI---GEG-GPITVPPGAKVTIA 138 (251)
T ss_pred CCCCEEEEECCCCCCHHEECCCEEECCCCCEECCCCEEE---CCC-CCCCCCCCCEEEEE
T ss_conf 368569998688750111157467876541512797111---589-85326998658980
No 121
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=52.92 E-value=18 Score=16.80 Aligned_cols=90 Identities=17% Similarity=0.260 Sum_probs=58.0
Q ss_pred CCCCCEEEEEEECCCHHHHHHHHHHHHHCCC-----C---------CHHHCCEEEE----ECCCHH-HHHHHHHHHHCCC
Q ss_conf 9876505999955998999999999987078-----8---------8455779999----879548-9999999741287
Q gi|254780754|r 1 MDRNIQKIHFKASNAKKAQEAYDKFVKIYGN-----S---------TSEEADVIVV----LGGDGF-MLQSFHQSKEYDK 61 (264)
Q Consensus 1 m~~~~~ki~i~~~~~~~a~~~~~~l~~~~~~-----~---------~~~~~Dlii~----iGGDGT-~L~a~~~~~~~~~ 61 (264)
|.++-++|.++.++......+...| +..+. . ....+|+|++ =|+||. +|+-++.. ...+
T Consensus 1 M~~~~~~ILIVDDd~~~~~~l~~~L-~~~G~~v~~a~~~~~al~~l~~~~~DlvllD~~mp~~~Gl~lL~~l~~~-~p~~ 78 (441)
T PRK10365 1 MTHDNIDILVVDDDISHCTILQALL-RGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIATLKEIKAL-NPAI 78 (441)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHH-HHCCCEEEEECCHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHH-CCCC
T ss_conf 9989985999839899999999999-9779989998999999999864899999988999999899999999842-9898
Q ss_pred EEEEE-------------CCCCCCCCCCCCCHHHHHHHHHHCCC
Q ss_conf 29941-------------53433201044587899986642012
Q gi|254780754|r 62 PIYGM-------------NCGSVGFLMNEYCIENLVERLSVAVE 92 (264)
Q Consensus 62 PilGI-------------n~G~lGFL~~~~~~~~~~~~l~~~~~ 92 (264)
||+=+ ..|-.-||.-++..+++...+.++..
T Consensus 79 pvIviT~~~~~~~av~A~k~GA~Dyl~KP~~~~~L~~~i~~al~ 122 (441)
T PRK10365 79 PVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALA 122 (441)
T ss_pred CEEEEECCCCHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHH
T ss_conf 28999699998999999982851234078889999999999999
No 122
>TIGR01237 D1pyr5carbox2 delta-1-pyrroline-5-carboxylate dehydrogenase, putative; InterPro: IPR005932 The delta(1)-pyrroline-5-carboxylate synthetase (1.5.1.12 from EC) a mitochondrial inner membrane, ATP- and NADPH-dependent, bifunctional enzyme, catalyzes the reduction of glutamate to delta1-pyrroline-5-carboxylate, a critical step in the de novo biosynthesis of proline and ornithine. It is the rate-limiting enzyme in proline biosynthesis and is subject to feedback inhibition by proline. 1-pyrroline-5-carboxylate + NAD+ + H2O = L-glutamate + NADH This model represents one of several related branches of delta-1-pyrroline-5-carboxylate dehydrogenase.; GO: 0003842 1-pyrroline-5-carboxylate dehydrogenase activity, 0006561 proline biosynthetic process.
Probab=52.71 E-value=5.7 Score=19.92 Aligned_cols=24 Identities=13% Similarity=0.108 Sum_probs=13.0
Q ss_pred CCHHHHHHHCCCEE-EEECCCEEEE
Q ss_conf 65044675229817-7408860586
Q gi|254780754|r 161 IGSTAYNFSALGPI-LPLESRHLLL 184 (264)
Q Consensus 161 tGSTAY~lSaGGpI-v~p~~~~~~i 184 (264)
.|-|+-.+=+|--+ |-|...+-+|
T Consensus 188 vG~tvApiVtGNcvvlKPAe~~~vI 212 (518)
T TIGR01237 188 VGMTVAPIVTGNCVVLKPAEAATVI 212 (518)
T ss_pred HHHHHHHHHHCCEEEECCCCCCHHH
T ss_conf 8657867761880587167762158
No 123
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=52.64 E-value=18 Score=16.78 Aligned_cols=62 Identities=16% Similarity=0.123 Sum_probs=36.4
Q ss_pred EEEECCCHHHHHHHHHHHHHC--------CCCCH-----HHCCEEEEECCCHHHH-----HHHHHHHHCCCEEEEECCCC
Q ss_conf 999559989999999999870--------78884-----5577999987954899-----99999741287299415343
Q gi|254780754|r 9 HFKASNAKKAQEAYDKFVKIY--------GNSTS-----EEADVIVVLGGDGFML-----QSFHQSKEYDKPIYGMNCGS 70 (264)
Q Consensus 9 ~i~~~~~~~a~~~~~~l~~~~--------~~~~~-----~~~Dlii~iGGDGT~L-----~a~~~~~~~~~PilGIn~G~ 70 (264)
.|+..-..-++.+...+.+.- +.... .++|.||.=||-|.-- .........++|+|||=.|.
T Consensus 2 LiiD~~dsft~~i~r~lr~~g~~~~v~p~~~~~~~~~~~~~~~giiLS~GPg~p~~~~~~~~~~~~l~~~iPiLGIC~G~ 81 (184)
T cd01743 2 LLIDNYDSFTYNLVQYLRELGAEVVVVRNDEITLEELELLNPDAIVISPGPGHPEDAGISLEIIRALAGKVPILGVCLGH 81 (184)
T ss_pred EEEECCCCHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHCCCCEEEECCCCCCHHHCCCHHHHHHHHHCCCCEEEECHHH
T ss_conf 99937981799999999867995999989999999997329799999999989256146099999984699899980999
No 124
>COG1929 Glycerate kinase [Carbohydrate transport and metabolism]
Probab=51.71 E-value=13 Score=17.76 Aligned_cols=47 Identities=19% Similarity=0.263 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHCCCCCHHHCCEE---EEECCCHHHHHHHHHHH--HCCCEEEE
Q ss_conf 99999999987078884557799---99879548999999974--12872994
Q gi|254780754|r 18 AQEAYDKFVKIYGNSTSEEADVI---VVLGGDGFMLQSFHQSK--EYDKPIYG 65 (264)
Q Consensus 18 a~~~~~~l~~~~~~~~~~~~Dli---i~iGGDGT~L~a~~~~~--~~~~PilG 65 (264)
|.+..+.+.+-+.+..+ ++|++ +.=||-||+=.-.+... ...++|-|
T Consensus 16 A~eva~aI~~g~~~v~p-~a~~~~~P~aDGGEGTvdal~~at~G~~~~~~V~g 67 (378)
T COG1929 16 ALEVAQAIEEGFQEVFP-DADYVLLPMADGGEGTVDALVDATQGEEVTLEVTG 67 (378)
T ss_pred HHHHHHHHHHHHHHHCC-CCCEEEEECCCCCCCHHHHHHHHHCCEEEEEEEEC
T ss_conf 99999999999986389-98579953268985239999985078399999767
No 125
>PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=50.90 E-value=19 Score=16.60 Aligned_cols=65 Identities=15% Similarity=0.194 Sum_probs=41.2
Q ss_pred EEEEEEECCCHHHHHHHHHHHHHCC-------CCCHHHCCEEEEECCCHHHHHHHHHHHH---------CCCEEEEECCC
Q ss_conf 0599995599899999999998707-------8884557799998795489999999741---------28729941534
Q gi|254780754|r 6 QKIHFKASNAKKAQEAYDKFVKIYG-------NSTSEEADVIVVLGGDGFMLQSFHQSKE---------YDKPIYGMNCG 69 (264)
Q Consensus 6 ~ki~i~~~~~~~a~~~~~~l~~~~~-------~~~~~~~Dlii~iGGDGT~L~a~~~~~~---------~~~PilGIn~G 69 (264)
|||+|+....-.-..+.+-+.+.-- ....+++|.+|. =|-|.|=.|.+...+ ...|+|||=+|
T Consensus 1 MkI~IiDyG~GNi~Sv~~al~~lg~~~~i~~~~~~i~~~d~lIL-PGVGsF~~am~~L~~~~l~~~i~~~~kpiLGICLG 79 (196)
T PRK13170 1 MNVVIIDTGCANLSSVKFAFERLGYNPVVSRDPDVILAADKLFL-PGVGTAQAAMDQLRERELIELIKACTQPVLGICLG 79 (196)
T ss_pred CEEEEECCCCCHHHHHHHHHHHCCCCEEEECCHHHHHHCCEEEE-CCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEE
T ss_conf 98999927955899999999987997999679899843897997-18998899999998735689999708974888800
Q ss_pred CC
Q ss_conf 33
Q gi|254780754|r 70 SV 71 (264)
Q Consensus 70 ~l 71 (264)
-=
T Consensus 80 MQ 81 (196)
T PRK13170 80 MQ 81 (196)
T ss_pred EE
T ss_conf 31
No 126
>PRK13147 consensus
Probab=50.86 E-value=19 Score=16.60 Aligned_cols=64 Identities=19% Similarity=0.232 Sum_probs=37.0
Q ss_pred EEEEEEECCCHHHHHHHHHHHH---H--CC--------CCCHHHCCEEEEECCCHHHHHHHHHH-------------HHC
Q ss_conf 0599995599899999999998---7--07--------88845577999987954899999997-------------412
Q gi|254780754|r 6 QKIHFKASNAKKAQEAYDKFVK---I--YG--------NSTSEEADVIVVLGGDGFMLQSFHQS-------------KEY 59 (264)
Q Consensus 6 ~ki~i~~~~~~~a~~~~~~l~~---~--~~--------~~~~~~~Dlii~iGGDGT~L~a~~~~-------------~~~ 59 (264)
||++|+....-.-..+.+-+.+ + ++ ..+.+++|. +++=|-|.|-.+++.. ...
T Consensus 1 MkI~IIDyg~GNi~Sv~~al~~~~~~~gl~~~~~i~~~~~~i~~~d~-lILPGVGsF~~~m~~L~~~~~l~~~i~~~~~~ 79 (211)
T PRK13147 1 MRVVVIDYNGGNLASAARALEKAATRKGIDATVVISADPTDVRNADR-IVLPGQGAFADCAQGLAAIPGLRNAIETATAA 79 (211)
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHCCE-EEECCCCCHHHHHHHHHHCCCHHHHHHHHHHC
T ss_conf 98999937943699999999988753588843999699999964997-89898664899999988635859999999976
Q ss_pred CCEEEEECCCC
Q ss_conf 87299415343
Q gi|254780754|r 60 DKPIYGMNCGS 70 (264)
Q Consensus 60 ~~PilGIn~G~ 70 (264)
++|+|||=.|-
T Consensus 80 ~~piLGICLGM 90 (211)
T PRK13147 80 GTPFLGICVGM 90 (211)
T ss_pred CCCEEEECHHH
T ss_conf 99879983675
No 127
>PRK13151 consensus
Probab=50.66 E-value=19 Score=16.58 Aligned_cols=64 Identities=19% Similarity=0.172 Sum_probs=42.6
Q ss_pred EEEEEEECCCHHHHHHHHHHHHHCC-------CCCHHHCCEEEEECCCHHHHHHHHHHHH---------CCCEEEEECCC
Q ss_conf 0599995599899999999998707-------8884557799998795489999999741---------28729941534
Q gi|254780754|r 6 QKIHFKASNAKKAQEAYDKFVKIYG-------NSTSEEADVIVVLGGDGFMLQSFHQSKE---------YDKPIYGMNCG 69 (264)
Q Consensus 6 ~ki~i~~~~~~~a~~~~~~l~~~~~-------~~~~~~~Dlii~iGGDGT~L~a~~~~~~---------~~~PilGIn~G 69 (264)
||+.|+....-.-..+.+-+.+.-- ..+.+++|.+ ++=|=|++=.+.+.... .+.|+|||=.|
T Consensus 1 MkI~IiDyg~GNi~Sv~~al~~lg~~~~i~~~~~~i~~~d~l-IlPGVGsf~~~m~~L~~~~l~~~i~~~~kpiLGICLG 79 (195)
T PRK13151 1 MKIIIIDTACANLASLKFCLDRLGFNATISRDLKELESADKL-FLPGVGTAKEAMKNLEQFNLIDFIQNTKKPLLGICLG 79 (195)
T ss_pred CEEEEEECCCHHHHHHHHHHHHCCCCEEEECCHHHHHHCCEE-EECCCCCHHHHHHHHHHCCCHHHHHHCCCCEEEEEEE
T ss_conf 989999479609999999999859987996799999448969-9888899999999998747788898639966887764
Q ss_pred C
Q ss_conf 3
Q gi|254780754|r 70 S 70 (264)
Q Consensus 70 ~ 70 (264)
-
T Consensus 80 M 80 (195)
T PRK13151 80 M 80 (195)
T ss_pred E
T ss_conf 7
No 128
>TIGR00216 ispH_lytB 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants . LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood . Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response .; GO: 0019288 isopentenyl diphosphate biosynthetic process mevalonate-independent pathway.
Probab=50.00 E-value=9 Score=18.67 Aligned_cols=12 Identities=33% Similarity=0.789 Sum_probs=6.6
Q ss_pred CCEEEEECCCHH
Q ss_conf 779999879548
Q gi|254780754|r 37 ADVIVVLGGDGF 48 (264)
Q Consensus 37 ~Dlii~iGGDGT 48 (264)
+|+.+||||--.
T Consensus 264 ~Dl~~ViGg~nS 275 (354)
T TIGR00216 264 VDLMLVIGGKNS 275 (354)
T ss_pred CEEEEEECCCCC
T ss_conf 148999757777
No 129
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=49.97 E-value=20 Score=16.51 Aligned_cols=65 Identities=18% Similarity=0.193 Sum_probs=42.9
Q ss_pred CEEEEEEECCCHHHHHHHHHHHHHCC------C--C-----CHHHCCEEEEECCCHH------HHHHHHHHHHCCCEEEE
Q ss_conf 50599995599899999999998707------8--8-----8455779999879548------99999997412872994
Q gi|254780754|r 5 IQKIHFKASNAKKAQEAYDKFVKIYG------N--S-----TSEEADVIVVLGGDGF------MLQSFHQSKEYDKPIYG 65 (264)
Q Consensus 5 ~~ki~i~~~~~~~a~~~~~~l~~~~~------~--~-----~~~~~Dlii~iGGDGT------~L~a~~~~~~~~~PilG 65 (264)
|++|-++.|...=.-.+.+.+...-. . . ...++|.||.==|=|+ ++...+.+ ..++|+||
T Consensus 1 ~~~IL~IDNyDSFtyNLv~yl~~lg~~v~V~rnd~~~~~~~~~~~pd~iviSPGPG~P~d~G~~~~~i~~~-~~~~PiLG 79 (191)
T COG0512 1 MMMILLIDNYDSFTYNLVQYLRELGAEVTVVRNDDISLELIEALKPDAIVISPGPGTPKDAGISLELIRRF-AGRIPILG 79 (191)
T ss_pred CCEEEEEECCCCHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHCCCCEEEECCCCCCHHHCCHHHHHHHHH-CCCCCEEE
T ss_conf 95699997744249999999997399349998896587788604999899848997937736189999986-08998899
Q ss_pred ECCCC
Q ss_conf 15343
Q gi|254780754|r 66 MNCGS 70 (264)
Q Consensus 66 In~G~ 70 (264)
|=+|+
T Consensus 80 VCLGH 84 (191)
T COG0512 80 VCLGH 84 (191)
T ss_pred ECCCH
T ss_conf 87437
No 130
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=49.26 E-value=20 Score=16.53 Aligned_cols=33 Identities=15% Similarity=0.215 Sum_probs=21.3
Q ss_pred HHCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 557799998795489999999741287299415343
Q gi|254780754|r 35 EEADVIVVLGGDGFMLQSFHQSKEYDKPIYGMNCGS 70 (264)
Q Consensus 35 ~~~Dlii~iGGDGT~L~a~~~~~~~~~PilGIn~G~ 70 (264)
..+|+|| .|....-+.-.+...++|.+.+..+.
T Consensus 103 ~~pD~vi---~d~~~~~~~~~A~~~giP~v~~~~~p 135 (401)
T cd03784 103 WGPDLVV---ADPLAFAGAVAAEALGIPAVRLLLGP 135 (401)
T ss_pred CCCCEEE---ECCCHHHHHHHHHHHCCCEEEEECCC
T ss_conf 7998899---89707899999999299989995666
No 131
>COG0371 GldA Glycerol dehydrogenase and related enzymes [Energy production and conversion]
Probab=48.88 E-value=21 Score=16.41 Aligned_cols=33 Identities=21% Similarity=0.444 Sum_probs=26.3
Q ss_pred HHCCEEEEECCCHHHHHHHHHHH-HCCCEEEEECC
Q ss_conf 55779999879548999999974-12872994153
Q gi|254780754|r 35 EEADVIVVLGGDGFMLQSFHQSK-EYDKPIYGMNC 68 (264)
Q Consensus 35 ~~~Dlii~iGGDGT~L~a~~~~~-~~~~PilGIn~ 68 (264)
+++|.+|-+|| |..+-+++.+. ..++||+.|=+
T Consensus 83 ~~~d~vIGVGG-Gk~iD~aK~~A~~~~~pfIsvPT 116 (360)
T COG0371 83 DGADVVIGVGG-GKTIDTAKAAAYRLGLPFISVPT 116 (360)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHCCCCEEECCC
T ss_conf 79998999568-18999999999981999798057
No 132
>COG0118 HisH Glutamine amidotransferase [Amino acid transport and metabolism]
Probab=47.62 E-value=22 Score=16.28 Aligned_cols=65 Identities=15% Similarity=0.232 Sum_probs=40.1
Q ss_pred CEEEEEEECCCHHHHHHHHHHHHHCCC-------CCHHHCCEEEEECCCHHHHHHHH------------HHHHCCCEEEE
Q ss_conf 505999955998999999999987078-------88455779999879548999999------------97412872994
Q gi|254780754|r 5 IQKIHFKASNAKKAQEAYDKFVKIYGN-------STSEEADVIVVLGGDGFMLQSFH------------QSKEYDKPIYG 65 (264)
Q Consensus 5 ~~ki~i~~~~~~~a~~~~~~l~~~~~~-------~~~~~~Dlii~iGGDGT~L~a~~------------~~~~~~~PilG 65 (264)
||++.|+....-.-..+.+-+.+.--+ +..+.+|-+| +=|=|+|=.|.. ......+|+||
T Consensus 1 m~~i~IIDyg~GNL~Sv~~Aler~G~~~~vs~d~~~i~~AD~li-LPGVGaf~~am~~L~~~gl~~~i~~~~~~~kP~LG 79 (204)
T COG0118 1 MMMVAIIDYGSGNLRSVKKALERLGAEVVVSRDPEEILKADKLI-LPGVGAFGAAMANLRERGLIEAIKEAVESGKPFLG 79 (204)
T ss_pred CCEEEEEECCCCHHHHHHHHHHHCCCEEEEECCHHHHHHCCEEE-ECCCCCHHHHHHHHHHCCHHHHHHHHHHCCCCEEE
T ss_conf 97899997286359999999997598069816988971088878-66978889999988863669999999755997799
Q ss_pred ECCCC
Q ss_conf 15343
Q gi|254780754|r 66 MNCGS 70 (264)
Q Consensus 66 In~G~ 70 (264)
|=.|-
T Consensus 80 IClGM 84 (204)
T COG0118 80 ICLGM 84 (204)
T ss_pred EEHHH
T ss_conf 81757
No 133
>cd06326 PBP1_STKc_like Type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins. The type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins, some of which contain a conserved catalytic serine/threonine protein kinase (STKc) domain in the N-terminal region. Members of this group are sequence-similar to the branched-chain amino acid ABC transporter leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however.
Probab=47.46 E-value=22 Score=16.27 Aligned_cols=56 Identities=16% Similarity=0.261 Sum_probs=36.3
Q ss_pred EEEEEEECCC----HHHHHHHHHHHHHCCCCCHHHCCEEEEECC--CHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf 0599995599----899999999998707888455779999879--548999999974128729941534
Q gi|254780754|r 6 QKIHFKASNA----KKAQEAYDKFVKIYGNSTSEEADVIVVLGG--DGFMLQSFHQSKEYDKPIYGMNCG 69 (264)
Q Consensus 6 ~ki~i~~~~~----~~a~~~~~~l~~~~~~~~~~~~Dlii~iGG--DGT~L~a~~~~~~~~~PilGIn~G 69 (264)
+||.++..|+ .++....++|.. +-.+..++|+ -++.+-+...+...++|+++-.+|
T Consensus 40 r~ielv~~D~~~~p~~a~~~a~~li~--------~d~V~aiiG~~~S~~~~a~~~~~~~~~vp~i~~~~~ 101 (336)
T cd06326 40 RKIELVTLDDGYEPERTVANTRKLIE--------DDKVFALFGYVGTPTTAAALPLLEEAGVPLVGPFTG 101 (336)
T ss_pred EEEEEEEECCCCCHHHHHHHHHHHHH--------CCCCEEEECCCCCHHHHHHHHHHHHHCCEEEECCCC
T ss_conf 79899996599998999999999985--------289569988889878999999999837627833668
No 134
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=46.86 E-value=22 Score=16.21 Aligned_cols=50 Identities=14% Similarity=0.179 Sum_probs=28.5
Q ss_pred CEEEEEEECCCHHHHHHHHHHHHHCCC----------CC----------------HHHCCEEEEECCCHHHHHHHHH
Q ss_conf 505999955998999999999987078----------88----------------4557799998795489999999
Q gi|254780754|r 5 IQKIHFKASNAKKAQEAYDKFVKIYGN----------ST----------------SEEADVIVVLGGDGFMLQSFHQ 55 (264)
Q Consensus 5 ~~ki~i~~~~~~~a~~~~~~l~~~~~~----------~~----------------~~~~Dlii~iGGDGT~L~a~~~ 55 (264)
.+|..++.+..-+...+.+++.+.+.+ .. .+++|+||.+|| |..+-+++-
T Consensus 31 ~k~~lvvt~~~~~~~g~~~~v~~~L~~~gi~~~~f~~V~~nP~~~~v~~~~~~~r~~~~D~ivavGG-GS~iD~AKa 106 (383)
T PRK09860 31 FTRTLIVTDNMLTKLGMAGDVQKALEERNIFSVIYDGTQPNPTTENVAAGLKLLKENNCDSVISLGG-GSPHDCAKG 106 (383)
T ss_pred CCEEEEECCCCHHHCCHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEECC-CCHHHHHHH
T ss_conf 9879998284566574699999999876995899689527969999999999998739999999389-622678999
No 135
>TIGR02081 metW methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In Pseudomonas putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells . .
Probab=46.77 E-value=22 Score=16.20 Aligned_cols=45 Identities=22% Similarity=0.371 Sum_probs=30.5
Q ss_pred CCHHHHHHHHHHHHCCC------EEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEE
Q ss_conf 95489999999741287------29941534332010445878999866420124320344
Q gi|254780754|r 45 GDGFMLQSFHQSKEYDK------PIYGMNCGSVGFLMNEYCIENLVERLSVAVECTFHPLK 99 (264)
Q Consensus 45 GDGT~L~a~~~~~~~~~------PilGIn~G~lGFL~~~~~~~~~~~~l~~~~~~~~~~~~ 99 (264)
|||++|.+++.-....- -+.|| |++.+.+.+.+.+..+....=++
T Consensus 23 GdG~LL~~L~d~k~v~GPPttehRL~G~----------Eid~~~v~Ac~~RGv~VIq~Dld 73 (205)
T TIGR02081 23 GDGELLALLRDEKQVRGPPTTEHRLYGI----------EIDQDGVLACVARGVSVIQGDLD 73 (205)
T ss_pred CCHHHHHHHHHHCCCCCCCCCCCEEEEE----------EECHHHHHHHHHCCCCEECCCCC
T ss_conf 8878999999743789888712000102----------34544599998625201300600
No 136
>cd00765 Pyrophosphate_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include pyrophosphate-dependent phosphofructokinases. These are found in bacteria as well as plants. These may be dimeric nonallosteric enzymes as in bacteria or allosteric heterotetramers as in plants.
Probab=46.13 E-value=23 Score=16.14 Aligned_cols=33 Identities=21% Similarity=0.350 Sum_probs=25.5
Q ss_pred HCCEEEEECCCHHHHHHHHHHH-----HCCCEEEEECC
Q ss_conf 5779999879548999999974-----12872994153
Q gi|254780754|r 36 EADVIVVLGGDGFMLQSFHQSK-----EYDKPIYGMNC 68 (264)
Q Consensus 36 ~~Dlii~iGGDGT~L~a~~~~~-----~~~~PilGIn~ 68 (264)
+-|-+|+||||++.-.|+-.+. ...+-|+|+=.
T Consensus 166 ~LdgLVIiGGddSnTnaa~LAEyf~~~~~~t~VIGvPk 203 (550)
T cd00765 166 DLDALVVIGGDDSNTNAALLAENFRSKGLKTRVIGVPK 203 (550)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHCCCCCEEEECCE
T ss_conf 99879996898734879999999996499955993453
No 137
>COG0693 ThiJ Putative intracellular protease/amidase [General function prediction only]
Probab=46.03 E-value=23 Score=16.13 Aligned_cols=41 Identities=22% Similarity=0.341 Sum_probs=32.4
Q ss_pred CHHHCCEEEEECCC---------HHHHHHHHHHHHCCCEEEEECCCCCCC
Q ss_conf 84557799998795---------489999999741287299415343320
Q gi|254780754|r 33 TSEEADVIVVLGGD---------GFMLQSFHQSKEYDKPIYGMNCGSVGF 73 (264)
Q Consensus 33 ~~~~~Dlii~iGGD---------GT~L~a~~~~~~~~~PilGIn~G~lGF 73 (264)
+++++|.+++-||+ -.+++.++.+...++||..|=.|..-.
T Consensus 63 ~~~~ydal~ipGG~~~~~~~~~~~~~~~~v~~~~~~~k~vaaIC~g~~~L 112 (188)
T COG0693 63 DAADYDALVIPGGDHGPEYLRPDPDLLAFVRDFYANGKPVAAICHGPAVL 112 (188)
T ss_pred CCCCCCEEEECCCCCCHHHCCCCHHHHHHHHHHHHCCCEEEEECCHHHHH
T ss_conf 81359899988997523221351789999999997699899984688998
No 138
>TIGR02418 acolac_catab acetolactate synthase, catabolic; InterPro: IPR012782 Acetolactate synthase is a thiamin pyrophosphate-dependent enzyme that combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. It exists in two distinct forms that have different properties, though they are clearly related , . The biosynthetic form, found in plants, fungi and bacteria, is involved in the biosynthesis of branched-chain amino acids and contains non-catalytic FAD. The catabolic form is found only in some bacteria, participates in butanediol fermentation, and does not contain FAD. This entry represents the catabolic form of acetolactate synthase, generally found in species that posses acetolactate decarboxylase, which is often encoded in the same operon. The enzyme is thought to be a homotetramer, though this has not conclusively been shown. Each monomer consists of three distinct domains, designated, starting from the N-terminus, as alpha, beta and gamma . The core of the alpha and gamma domains is a six-stranded parallel beta sheet surrounded by alpha helices, while the the beta domain forms a double Rossman fold. The thiamin pyrophosphate cofactor has an unusual conformation that has not been seen in other enzymes using this cofactor, including the biosynthetic form of acetolactate synthase. The active site is located in a funnel at the dimer interface, bordered by residues from all three domains.; GO: 0000287 magnesium ion binding, 0003984 acetolactate synthase activity, 0030976 thiamin pyrophosphate binding, 0050660 FAD binding.
Probab=45.79 E-value=17 Score=16.92 Aligned_cols=34 Identities=18% Similarity=0.276 Sum_probs=18.0
Q ss_pred CHHHCCEEEEECCCHHHHHHHHHHHHC--CCEEEEECC
Q ss_conf 845577999987954899999997412--872994153
Q gi|254780754|r 33 TSEEADVIVVLGGDGFMLQSFHQSKEY--DKPIYGMNC 68 (264)
Q Consensus 33 ~~~~~Dlii~iGGDGT~L~a~~~~~~~--~~PilGIn~ 68 (264)
-.+.+||||+||=|=-==.+. +|+. +.+|+-|=.
T Consensus 266 LLk~aDLvItIGYdPIEYep~--~WN~~~~~~Iv~iD~ 301 (553)
T TIGR02418 266 LLKQADLVITIGYDPIEYEPR--NWNSELDATIVHIDV 301 (553)
T ss_pred HHHHCCEEEEECCCCEECCHH--HCCCCCCCEEEEEEE
T ss_conf 775669789833885030755--447788720689731
No 139
>PRK09393 ftrA transcriptional activator FtrA; Provisional
Probab=44.99 E-value=24 Score=16.03 Aligned_cols=36 Identities=19% Similarity=0.340 Sum_probs=30.1
Q ss_pred HHCCEEEEECCCH-------HHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 5577999987954-------89999999741287299415343
Q gi|254780754|r 35 EEADVIVVLGGDG-------FMLQSFHQSKEYDKPIYGMNCGS 70 (264)
Q Consensus 35 ~~~Dlii~iGGDG-------T~L~a~~~~~~~~~PilGIn~G~ 70 (264)
..+|++|+.||.| .++.+++........+.|+-+|.
T Consensus 72 ~~~D~lvV~gg~~~~~~~~~~l~~wLr~~~~~g~~l~~vctGa 114 (320)
T PRK09393 72 DRADTIVIPGWRDPDEPVPEPLLKALRAAHARGARLCSICSGV 114 (320)
T ss_pred CCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCEEEEECHHH
T ss_conf 7688899878777244699899999999987599899982999
No 140
>PRK13575 3-dehydroquinate dehydratase; Provisional
Probab=44.73 E-value=22 Score=16.22 Aligned_cols=78 Identities=9% Similarity=-0.016 Sum_probs=37.4
Q ss_pred EECCCHHHHHHHHHHHHHCCCCCH-H-HCCEEEEECCCHHHHHHHHHHHH--CCCEEE-EECCCCC-CCCCCCCCHHHHH
Q ss_conf 955998999999999987078884-5-57799998795489999999741--287299-4153433-2010445878999
Q gi|254780754|r 11 KASNAKKAQEAYDKFVKIYGNSTS-E-EADVIVVLGGDGFMLQSFHQSKE--YDKPIY-GMNCGSV-GFLMNEYCIENLV 84 (264)
Q Consensus 11 ~~~~~~~a~~~~~~l~~~~~~~~~-~-~~Dlii~iGGDGT~L~a~~~~~~--~~~Pil-GIn~G~l-GFL~~~~~~~~~~ 84 (264)
++-.....+.+.+.+..+....+. | ..|+.=.+ ....+...++.... .++|+| .+.+-.- |+. +.+.++..
T Consensus 10 i~p~~~~~~~~~~~~~~~~~gaDiVE~RvD~~~~~-~~~~v~~~l~~lr~~~~~~Pli~T~Rt~~EGG~~--~~~~~~y~ 86 (238)
T PRK13575 10 IAPQLSIEETLIQKINHRIDAIDVLELRIDQWENV-TVDQVAEMITKLKVMQDSFKLLVTYRTKLQGGYG--QFTNDLYL 86 (238)
T ss_pred ECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCC-CHHHHHHHHHHHHHHCCCCCEEEEECCHHHCCCC--CCCHHHHH
T ss_conf 28864377999999872447875899985401237-9899999999999855898689996677668998--79999999
Q ss_pred HHHHHCC
Q ss_conf 8664201
Q gi|254780754|r 85 ERLSVAV 91 (264)
Q Consensus 85 ~~l~~~~ 91 (264)
+.+..+.
T Consensus 87 ~ll~~~~ 93 (238)
T PRK13575 87 NLISDLA 93 (238)
T ss_pred HHHHHHH
T ss_conf 9999999
No 141
>TIGR02038 protease_degS periplasmic serine peptidase DegS; InterPro: IPR011783 Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes . They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence . Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases . Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base . The geometric orientations of the catalytic residues are similar between families, despite different protein folds . The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) , . Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. This family consists of the periplasmic serine protease DegS (HhoB). They belong to MEROPS peptidase family S1, subfamily S1C (protease Do, clan PA(S)). They are a shorter paralogs of protease Do (HtrA, DegP) and DegQ (HhoA). They are found in Escherichia coli and several of the gammaproteobacteria. DegS contains a trypsin domain and a single copy of PDZ domain (in contrast to DegP with two copies). A critical role of this DegS is to sense stress by detecting misfolded proteins in the periplasm. DegS then cleaves the periplasmic domain of RseA, a transmembrane protein and inhibitor of sigmaE, activating the sigmaE-driven expression of periplasmic proteases/chaperones , , .; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis.
Probab=44.71 E-value=24 Score=16.00 Aligned_cols=57 Identities=26% Similarity=0.339 Sum_probs=43.1
Q ss_pred EECCCEEEEECCCCCCHHHHHHCCCCCCCEEEEEECCCCCCEEEEEECCE-ECCCCCEEEE
Q ss_conf 40886058630354330111100278841489997487887589998898-8148778999
Q gi|254780754|r 176 PLESRHLLLTPVSPFKPRRWHGAILPNDVMIEIQVLEHKQRPVIATADRL-AIEPVSRINV 235 (264)
Q Consensus 176 ~p~~~~~~itpI~p~~l~~~rplVl~~~~~I~i~i~~~~~~~~~~~~D~~-~~~~~~~i~I 235 (264)
-+++..++++.+.|=.|.+ |.=+++.|-.|++.-.+- -.+.-..|.+ +++|++.|.+
T Consensus 281 ~~~l~Givv~~vdPnGPAA-~Ag~l~~Dvilk~dg~~~--~g~~~~md~vA~~~PG~~v~~ 338 (358)
T TIGR02038 281 LEDLRGIVVTGVDPNGPAA-RAGILVRDVILKVDGKEV--IGAEELMDRVAETRPGSKVLV 338 (358)
T ss_pred CCCCCEEEEECCCCCCHHH-HHCCCCCCEEEEECCCCC--CCHHHHHHHHHCCCCCCEEEE
T ss_conf 7522407885348987676-506771557898679536--756554555431799977899
No 142
>cd03137 GATase1_AraC_1 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=42.86 E-value=25 Score=15.82 Aligned_cols=37 Identities=19% Similarity=0.387 Sum_probs=25.8
Q ss_pred HHHCCEEEEECCCHH--------HHHHHHHHHHCCCEEEEECCCC
Q ss_conf 455779999879548--------9999999741287299415343
Q gi|254780754|r 34 SEEADVIVVLGGDGF--------MLQSFHQSKEYDKPIYGMNCGS 70 (264)
Q Consensus 34 ~~~~Dlii~iGGDGT--------~L~a~~~~~~~~~PilGIn~G~ 70 (264)
.+++|++++.||.|. ++..+++.......+.||-+|.
T Consensus 62 ~~~~D~livpgg~~~~~~~~~~~l~~~L~~~~~~~~~l~~ictG~ 106 (187)
T cd03137 62 LAAADTVIVPGGPDVDGRPPPPALLAALRRAAARGARVASVCTGA 106 (187)
T ss_pred CCCCCEEEECCCCCHHHCCCCHHHHHHHHHHHHCCCEEEEECCCC
T ss_conf 564699998898861102599999999999975386688753140
No 143
>KOG1116 consensus
Probab=42.50 E-value=26 Score=15.79 Aligned_cols=75 Identities=20% Similarity=0.321 Sum_probs=38.5
Q ss_pred CHHHCCEEEEECCCHHHHHHHHHHHHC-------CCEEEEECCCCC-CCCCCCCCHH---H-HHHHHHHCCCCCCCEEEE
Q ss_conf 845577999987954899999997412-------872994153433-2010445878---9-998664201243203443
Q gi|254780754|r 33 TSEEADVIVVLGGDGFMLQSFHQSKEY-------DKPIYGMNCGSV-GFLMNEYCIE---N-LVERLSVAVECTFHPLKM 100 (264)
Q Consensus 33 ~~~~~Dlii~iGGDGT~L~a~~~~~~~-------~~PilGIn~G~l-GFL~~~~~~~---~-~~~~l~~~~~~~~~~~~~ 100 (264)
.....|-|+++||||.+-.++.-+... ++||==|=+|+= ||..+ +... + ...+......+..+++..
T Consensus 233 dl~kyDgIv~vsGDGl~hEVlNGLl~R~D~~~~~klPigiiP~GSGNala~S-v~~~~~~~~~~~a~l~iirg~~t~~dv 311 (579)
T KOG1116 233 DLGKYDGIVCVSGDGLLHEVLNGLLERPDWEAAVKLPIGIIPCGSGNALAKS-VLWTNGPDLPLLATLLIIRGRLTPMDV 311 (579)
T ss_pred HCCCCCEEEEECCCCCHHHHHHCCCCCCCHHHHHCCCEEEEECCCCCHHHHH-HHCCCCCCCCHHHHHHHHCCCCCCHHE
T ss_conf 2045553899627867788550300065566672375047545786078887-550168652067899997359981220
Q ss_pred EEEECCCC
Q ss_conf 45421244
Q gi|254780754|r 101 TVFDYDNS 108 (264)
Q Consensus 101 ~~~~~~~~ 108 (264)
...++.++
T Consensus 312 ~~v~~~~~ 319 (579)
T KOG1116 312 SVVEYAGK 319 (579)
T ss_pred EEHHHCCC
T ss_conf 00424067
No 144
>KOG3584 consensus
Probab=42.19 E-value=8.1 Score=18.95 Aligned_cols=28 Identities=32% Similarity=0.369 Sum_probs=22.9
Q ss_pred EEEEECCEEEEECCCCHHHHHHHCCCEE
Q ss_conf 3121035079822665044675229817
Q gi|254780754|r 147 LPELVCDGLVVSTPIGSTAYNFSALGPI 174 (264)
Q Consensus 147 ~~~~~~DGvivSTptGSTAY~lSaGGpI 174 (264)
.+.+..-=.-+|-|+||++|-.|-|||.
T Consensus 149 ~~~~~~ai~~~s~P~~~i~~~tS~G~~q 176 (348)
T KOG3584 149 EETFSAAIATVSVPTGSIGYQTSSGGPQ 176 (348)
T ss_pred CCCCCHHHEEEECCCCCCEEEECCCCCE
T ss_conf 1234411056422787513563699733
No 145
>PRK13527 glutamine amidotransferase subunit PdxT; Provisional
Probab=41.95 E-value=21 Score=16.32 Aligned_cols=39 Identities=23% Similarity=0.486 Sum_probs=24.4
Q ss_pred CCHHHCCEEEEECCCHH----------HHHHHHHHHHCCCEEEEECCCC
Q ss_conf 88455779999879548----------9999999741287299415343
Q gi|254780754|r 32 STSEEADVIVVLGGDGF----------MLQSFHQSKEYDKPIYGMNCGS 70 (264)
Q Consensus 32 ~~~~~~Dlii~iGGDGT----------~L~a~~~~~~~~~PilGIn~G~ 70 (264)
++.+++|-+|.=||-=+ +..+++.+...++|+|||=.|-
T Consensus 39 ~~l~~~d~LILPGG~f~~~m~~L~~~gl~~~i~~~i~~g~PiLGIClGm 87 (196)
T PRK13527 39 EDLKDCDALIIPGGESTTIGRLMKRYGILDEIKEKIEEGLPILGTCAGL 87 (196)
T ss_pred HHHHCCCEEEECCCCHHHHHHHHHHCCCHHHHHHHHHCCCCEEEECHHH
T ss_conf 9983199799899667999999888688899999997699779970879
No 146
>PRK13176 consensus
Probab=41.86 E-value=26 Score=15.73 Aligned_cols=64 Identities=22% Similarity=0.302 Sum_probs=35.5
Q ss_pred EEEEEEECCCHHHHHHHHHHHHH---CC-------CC---CHHHCCEEEEECCCHHHHHHHHHHH--------------H
Q ss_conf 05999955998999999999987---07-------88---8455779999879548999999974--------------1
Q gi|254780754|r 6 QKIHFKASNAKKAQEAYDKFVKI---YG-------NS---TSEEADVIVVLGGDGFMLQSFHQSK--------------E 58 (264)
Q Consensus 6 ~ki~i~~~~~~~a~~~~~~l~~~---~~-------~~---~~~~~Dlii~iGGDGT~L~a~~~~~--------------~ 58 (264)
|||+|+....-.-..+.+-+.+. .+ .. ...++|.+ ++=|-|.|-.+.+... .
T Consensus 1 MkI~IIDyg~GNi~Sv~~al~~~g~~~~i~~~i~~~~~~~~~~~~~~l-ILPGVGsf~~~m~~L~~~~g~~~~i~~~~~~ 79 (216)
T PRK13176 1 MRVAIIDYGSGNLHSATKAFERAAREAGIAAEIDVTSDPDRVARADRI-VLPGVGAFADCRRGLDAVDGMVEALTEAVEK 79 (216)
T ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHCCCEE-EECCCCCHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 989999069837999999999987643889609997899998379979-9899877899999877627728999999997
Q ss_pred CCCEEEEECCCC
Q ss_conf 287299415343
Q gi|254780754|r 59 YDKPIYGMNCGS 70 (264)
Q Consensus 59 ~~~PilGIn~G~ 70 (264)
.++|+|||=.|-
T Consensus 80 ~~~piLGIClGm 91 (216)
T PRK13176 80 KARPFLGICVGM 91 (216)
T ss_pred CCCCEEEEEHHH
T ss_conf 699579985312
No 147
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=41.79 E-value=26 Score=15.72 Aligned_cols=31 Identities=16% Similarity=0.210 Sum_probs=17.0
Q ss_pred HHHCCEEEEECCCHH-HHHHHHHHHHCCCEEE
Q ss_conf 455779999879548-9999999741287299
Q gi|254780754|r 34 SEEADVIVVLGGDGF-MLQSFHQSKEYDKPIY 64 (264)
Q Consensus 34 ~~~~Dlii~iGGDGT-~L~a~~~~~~~~~Pil 64 (264)
..++|+|++.+.-.+ .+-+.......++|++
T Consensus 97 ~~~~Div~~~~~~~~~~~~~~~~~~~~~~p~v 128 (394)
T cd03794 97 RRRPDVIIATSPPLLIALAALLLARLKGAPFV 128 (394)
T ss_pred CCCCCEEEECCCCHHHHHHHHHHHHHCCCCEE
T ss_conf 58998899917847889999999986399699
No 148
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=41.47 E-value=27 Score=15.69 Aligned_cols=51 Identities=14% Similarity=0.261 Sum_probs=28.7
Q ss_pred CEEEEEEECCCHH----HHHHHHHHHHH------CCCCCH----------------HHCCEEEEECCCHHHHHHHHHH
Q ss_conf 5059999559989----99999999987------078884----------------5577999987954899999997
Q gi|254780754|r 5 IQKIHFKASNAKK----AQEAYDKFVKI------YGNSTS----------------EEADVIVVLGGDGFMLQSFHQS 56 (264)
Q Consensus 5 ~~ki~i~~~~~~~----a~~~~~~l~~~------~~~~~~----------------~~~Dlii~iGGDGT~L~a~~~~ 56 (264)
.+|..++++..-. ..++.+.|... |.+..+ .++|.||.+|| |+.+-+++-.
T Consensus 29 ~~r~liVTd~~~~~~g~~~~v~~~L~~~~i~~~if~~v~p~P~~~~v~~~~~~~~~~~~D~iIalGG-GS~~D~AK~i 105 (377)
T COG1454 29 AKRALIVTDRGLAKLGLLDKVLDSLDAAGIEYEVFDEVEPEPTIETVEAGAEVAREFGPDTIIALGG-GSVIDAAKAI 105 (377)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEECC-CCHHHHHHHH
T ss_conf 8715999798631106699999998744982899568899998889999999998169998999779-3087899999
No 149
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=41.24 E-value=27 Score=15.67 Aligned_cols=20 Identities=10% Similarity=0.152 Sum_probs=10.1
Q ss_pred EEEECCEEEEECCCCHHHHH
Q ss_conf 12103507982266504467
Q gi|254780754|r 148 PELVCDGLVVSTPIGSTAYN 167 (264)
Q Consensus 148 ~~~~~DGvivSTptGSTAY~ 167 (264)
+.++..++++-|.+|+-...
T Consensus 109 ~~~~~G~v~~G~SAGa~~~~ 128 (210)
T cd03129 109 KRVARGVVIGGTSAGAAVMG 128 (210)
T ss_pred HHHHCCCEEEEECHHHHHCC
T ss_conf 99984990997355788628
No 150
>COG2071 Predicted glutamine amidotransferases [General function prediction only]
Probab=41.11 E-value=27 Score=15.65 Aligned_cols=25 Identities=32% Similarity=0.460 Sum_probs=20.8
Q ss_pred CCHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf 9548999999974128729941534
Q gi|254780754|r 45 GDGFMLQSFHQSKEYDKPIYGMNCG 69 (264)
Q Consensus 45 GDGT~L~a~~~~~~~~~PilGIn~G 69 (264)
-|.+=+--++.+.+.++|||||=-|
T Consensus 92 RD~~E~aLi~~ALe~~iPILgICRG 116 (243)
T COG2071 92 RDAFELALIRAALERGIPILGICRG 116 (243)
T ss_pred CCHHHHHHHHHHHHCCCCEEEECCC
T ss_conf 0077899999999769988998401
No 151
>PRK10816 DNA-binding transcriptional regulator PhoP; Provisional
Probab=40.45 E-value=28 Score=15.59 Aligned_cols=86 Identities=14% Similarity=0.296 Sum_probs=56.8
Q ss_pred EEEEEEECCCHHHHHHHHHHHHHCCC-------------CCHHHCCEEEE----ECCCHH-HHHHHHHHHHCCCEEEEEC
Q ss_conf 05999955998999999999987078-------------88455779999----879548-9999999741287299415
Q gi|254780754|r 6 QKIHFKASNAKKAQEAYDKFVKIYGN-------------STSEEADVIVV----LGGDGF-MLQSFHQSKEYDKPIYGMN 67 (264)
Q Consensus 6 ~ki~i~~~~~~~a~~~~~~l~~~~~~-------------~~~~~~Dlii~----iGGDGT-~L~a~~~~~~~~~PilGIn 67 (264)
|||.++-++..-++.+...|....-+ .....+|+++. =|+||. +++.+|. ...++||+-+.
T Consensus 1 mkILivEdd~~~~~~l~~~L~~~g~~V~~a~~~~~al~~~~~~~~dlvilD~~lp~~~G~~l~~~ir~-~~~~~piI~lt 79 (223)
T PRK10816 1 MRVLVVEDNALLRHHLKVQLQDAGHQVDAAEDAKEADYYLNEHLPDIAIVDLGLPDEDGLSLIRRWRS-NDVSLPILVLT 79 (223)
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCHHC-CCCCCCEEEEE
T ss_conf 98999959899999999999978999999899999999997579989999799989886400120110-48987689994
Q ss_pred C-------------CCCCCCCCCCCHHHHHHHHHHCCC
Q ss_conf 3-------------433201044587899986642012
Q gi|254780754|r 68 C-------------GSVGFLMNEYCIENLVERLSVAVE 92 (264)
Q Consensus 68 ~-------------G~lGFL~~~~~~~~~~~~l~~~~~ 92 (264)
. |--.||+-++..+++...+.....
T Consensus 80 a~~~~~~~~~al~~Gaddyl~KP~~~~eL~arv~~~lr 117 (223)
T PRK10816 80 ARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMR 117 (223)
T ss_pred CCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHC
T ss_conf 44567789999986998864189777899999999966
No 152
>TIGR01064 pyruv_kin pyruvate kinase; InterPro: IPR001697 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis , the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions . The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined , . The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. ; GO: 0000287 magnesium ion binding, 0004743 pyruvate kinase activity, 0030955 potassium ion binding, 0006096 glycolysis.
Probab=39.86 E-value=28 Score=15.56 Aligned_cols=35 Identities=29% Similarity=0.283 Sum_probs=28.4
Q ss_pred EEECCEEEEECCCCHHHHHHHCCCEEEEECCCEEEEECC
Q ss_conf 210350798226650446752298177408860586303
Q gi|254780754|r 149 ELVCDGLVVSTPIGSTAYNFSALGPILPLESRHLLLTPV 187 (264)
Q Consensus 149 ~~~~DGvivSTptGSTAY~lSaGGpIv~p~~~~~~itpI 187 (264)
++.+.=+|+-|-+|.||+.+|= ..|.++.|.+||-
T Consensus 404 s~~~kaivv~T~~G~ta~~~S~----~rp~~piia~T~~ 438 (513)
T TIGR01064 404 SLDAKAIVVPTESGRTARLLSK----YRPSAPIIAVTPN 438 (513)
T ss_pred CCCCCEEEEECCCCCHHHHHHH----HCCCCCEEEEECC
T ss_conf 0155268981489847888975----2779838997087
No 153
>COG0518 GuaA GMP synthase - Glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=39.65 E-value=29 Score=15.51 Aligned_cols=66 Identities=15% Similarity=0.183 Sum_probs=41.6
Q ss_pred CEEEEEEECCCHHHHHHHHHHHHHC---CC----------CCHHHCCEEEEECCC----------HHHHHHHHHHHHCCC
Q ss_conf 5059999559989999999999870---78----------884557799998795----------489999999741287
Q gi|254780754|r 5 IQKIHFKASNAKKAQEAYDKFVKIY---GN----------STSEEADVIVVLGGD----------GFMLQSFHQSKEYDK 61 (264)
Q Consensus 5 ~~ki~i~~~~~~~a~~~~~~l~~~~---~~----------~~~~~~Dlii~iGGD----------GT~L~a~~~~~~~~~ 61 (264)
|.+|.+.....+-.+-+.+.+.+.- .+ ....++|.+|+-||= +.....+..+....+
T Consensus 1 ~~~ilIld~g~q~~~li~r~~re~g~v~~e~~~~~~~~~~~~~~~~~giIlsGgp~sv~~~~~w~~~~~~~i~~~~~p~~ 80 (198)
T COG0518 1 MRKILILDFGGQYLGLIARRLRELGYVYSEIVPYTGDAEELPLDSPDGIIISGGPMSVYDEDPWLPREKDLIKDAGVPGK 80 (198)
T ss_pred CCEEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCC
T ss_conf 95799995797076799999987398269998578880115666888899858988776443330557899997188888
Q ss_pred EEEEECCCC
Q ss_conf 299415343
Q gi|254780754|r 62 PIYGMNCGS 70 (264)
Q Consensus 62 PilGIn~G~ 70 (264)
|+|||=.|+
T Consensus 81 pvLGIC~G~ 89 (198)
T COG0518 81 PVLGICLGH 89 (198)
T ss_pred CEEEECHHH
T ss_conf 789987618
No 154
>PRK13435 response regulator; Provisional
Probab=39.62 E-value=29 Score=15.51 Aligned_cols=86 Identities=19% Similarity=0.264 Sum_probs=52.9
Q ss_pred EEEEEEECCCHHHHHHHHHHHHHCCCC---------------CHHHCCEEEE---EC-C-CHHHHHHHHHHH-HCCCEEE
Q ss_conf 059999559989999999999870788---------------8455779999---87-9-548999999974-1287299
Q gi|254780754|r 6 QKIHFKASNAKKAQEAYDKFVKIYGNS---------------TSEEADVIVV---LG-G-DGFMLQSFHQSK-EYDKPIY 64 (264)
Q Consensus 6 ~ki~i~~~~~~~a~~~~~~l~~~~~~~---------------~~~~~Dlii~---iG-G-DGT~L~a~~~~~-~~~~Pil 64 (264)
+||-++.++..-+..+...+. ..+.+ ....+|+++. +. | ||. ..++... ..++||+
T Consensus 2 mRILIVEDe~~i~~~l~~~L~-~~G~~vv~~A~~~~eAl~~~~~~~PDlvllDi~LpdG~~G~--e~~r~l~~~~~ipvI 78 (141)
T PRK13435 2 LRVLIVEDEALIALELEKLLE-EAGHQVVGIASTSEQALALGRRAQPDVALVDIRLADGPTGV--EVARRLSIDGGVEVI 78 (141)
T ss_pred CEEEEECCCHHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHCCCCCEEEECCCCCCCCCHH--HHHHHHHHCCCCCEE
T ss_conf 789998998999999999999-87997999759999999997659998999788789999899--999999875998389
Q ss_pred EEC----------CCCCCCCCCCCCHHHHHHHHHHCCCCC
Q ss_conf 415----------343320104458789998664201243
Q gi|254780754|r 65 GMN----------CGSVGFLMNEYCIENLVERLSVAVECT 94 (264)
Q Consensus 65 GIn----------~G~lGFL~~~~~~~~~~~~l~~~~~~~ 94 (264)
=+. .|-.+|+.-+|+.+++.++++.+....
T Consensus 79 ~lTa~~d~~~~~~aGA~dyl~KPf~~~eL~~ai~~~~~rr 118 (141)
T PRK13435 79 FMTANPERVGHDFAGALGVIAKPYSLRQVARALSYVAARR 118 (141)
T ss_pred EEECCHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHHHC
T ss_conf 9977799860134599858989999899999999999715
No 155
>PRK07567 glutamine amidotransferase; Provisional
Probab=39.26 E-value=29 Score=15.47 Aligned_cols=66 Identities=17% Similarity=0.248 Sum_probs=38.9
Q ss_pred CEEEEEEEC--CCHHHHHHHHHHHHHCCC-----------------CCHHHCCEEEEECC-----CHH------------
Q ss_conf 505999955--998999999999987078-----------------88455779999879-----548------------
Q gi|254780754|r 5 IQKIHFKAS--NAKKAQEAYDKFVKIYGN-----------------STSEEADVIVVLGG-----DGF------------ 48 (264)
Q Consensus 5 ~~ki~i~~~--~~~~a~~~~~~l~~~~~~-----------------~~~~~~Dlii~iGG-----DGT------------ 48 (264)
||.+.++.- +.+-+.+-...+.+..+- .+.++.|-+|+-|| |..
T Consensus 1 m~pfLllq~R~~~~~a~~E~~~f~~~~gl~~~q~~~~rld~~~~p~~dL~~ydgvivgGsp~~vsd~~~~~~~~q~~~e~ 80 (242)
T PRK07567 1 MKPFLLLQPRPEDEVADAEYAAFLRYGGLKPAELRRIRLDHEELPDLDLDDFSGVIVGGSPFNVSDPAYSKSPTQRRVEA 80 (242)
T ss_pred CCCEEEEEECCCHHHHHHHHHHHHHHHCCCHHHEEEEEECCCCCCCCCHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHH
T ss_conf 98669996179658899999999997499889979998148899987830007899948897567854456468889999
Q ss_pred -HHHHHHHHHHCCCEEEEECCCC
Q ss_conf -9999999741287299415343
Q gi|254780754|r 49 -MLQSFHQSKEYDKPIYGMNCGS 70 (264)
Q Consensus 49 -~L~a~~~~~~~~~PilGIn~G~ 70 (264)
+..-.+.....++|+|||=.|+
T Consensus 81 ~l~~Ll~~~~~~~~P~LGiC~G~ 103 (242)
T PRK07567 81 ELSGLLDEVVARDFPFLGCCYGV 103 (242)
T ss_pred HHHHHHHHHHHCCCCEEEECHHH
T ss_conf 99999999984699889985638
No 156
>PRK00074 guaA GMP synthase; Reviewed
Probab=39.19 E-value=29 Score=15.47 Aligned_cols=68 Identities=16% Similarity=0.212 Sum_probs=46.8
Q ss_pred CCCEEEEEEECCCHHHHHHHHHHHHH--CCC-----CCH-----HHCCEEEEECCCHHHH-----HHHHHHHHCCCEEEE
Q ss_conf 76505999955998999999999987--078-----884-----5577999987954899-----999997412872994
Q gi|254780754|r 3 RNIQKIHFKASNAKKAQEAYDKFVKI--YGN-----STS-----EEADVIVVLGGDGFML-----QSFHQSKEYDKPIYG 65 (264)
Q Consensus 3 ~~~~ki~i~~~~~~~a~~~~~~l~~~--~~~-----~~~-----~~~Dlii~iGGDGT~L-----~a~~~~~~~~~PilG 65 (264)
.++.+|.++.-..+-+|-++..+.+. |.+ ... .++.-||-=||=.++. +.-....+.++||||
T Consensus 2 ~~~~~IlIlDFGSQytqLIaRRvRElgVysEI~p~~~~~~~i~~~~pkgIILSGGP~SV~~~~aP~~d~~if~l~IPILG 81 (513)
T PRK00074 2 IHHDKILILDFGSQYTQLIARRVRELGVYSEIVPYDISAEEIRAFNPKGIILSGGPASVYEEGAPRADPEIFELGVPVLG 81 (513)
T ss_pred CCCCEEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHCCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCEEE
T ss_conf 87686999988964999999999823835999669999899850499789988999636899998899899826998699
Q ss_pred ECCCC
Q ss_conf 15343
Q gi|254780754|r 66 MNCGS 70 (264)
Q Consensus 66 In~G~ 70 (264)
|-.|.
T Consensus 82 ICYG~ 86 (513)
T PRK00074 82 ICYGM 86 (513)
T ss_pred ECHHH
T ss_conf 75889
No 157
>pfam00201 UDPGT UDP-glucoronosyl and UDP-glucosyl transferase.
Probab=39.09 E-value=29 Score=15.46 Aligned_cols=32 Identities=9% Similarity=-0.296 Sum_probs=17.6
Q ss_pred HHCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf 55779999879548999999974128729941534
Q gi|254780754|r 35 EEADVIVVLGGDGFMLQSFHQSKEYDKPIYGMNCG 69 (264)
Q Consensus 35 ~~~Dlii~iGGDGT~L~a~~~~~~~~~PilGIn~G 69 (264)
++.|++|+-.=+...+-.++. .++|.+++-++
T Consensus 118 ~~fDlvI~e~~~~c~~~la~~---l~iP~i~~~s~ 149 (501)
T pfam00201 118 SSFDVVLADPVWPCGALLAEL---LHIPTVYSLRF 149 (501)
T ss_pred CCCCEEEEECCHHHHHHHHHH---CCCCEEEEECC
T ss_conf 798889984000469999998---09999999788
No 158
>PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed
Probab=38.40 E-value=24 Score=15.96 Aligned_cols=34 Identities=24% Similarity=0.611 Sum_probs=21.1
Q ss_pred CCHHHHHHHHHHHHC-C-----C-EEEEECC-CCCCCCCCCC
Q ss_conf 954899999997412-8-----7-2994153-4332010445
Q gi|254780754|r 45 GDGFMLQSFHQSKEY-D-----K-PIYGMNC-GSVGFLMNEY 78 (264)
Q Consensus 45 GDGT~L~a~~~~~~~-~-----~-PilGIn~-G~lGFL~~~~ 78 (264)
|||.+|+++.++... + + -|-||.| |++-+++|.+
T Consensus 23 G~~~il~~~~~al~elg~~~~~~v~vsGIGCs~r~~~y~~~~ 64 (280)
T PRK11867 23 GDGAILAALQRALAELGLDPENVAVVSGIGCSSRLPYYINTY 64 (280)
T ss_pred CCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCHHHEEEC
T ss_conf 549999999999998399902189996315773224143536
No 159
>PRK13141 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=38.20 E-value=30 Score=15.37 Aligned_cols=63 Identities=14% Similarity=0.239 Sum_probs=37.5
Q ss_pred EEEEEECCCHHHHHHHHHHHHHCC-------CCCHHHCCEEEEECCCHH------------HHHHHHHHHHCCCEEEEEC
Q ss_conf 599995599899999999998707-------888455779999879548------------9999999741287299415
Q gi|254780754|r 7 KIHFKASNAKKAQEAYDKFVKIYG-------NSTSEEADVIVVLGGDGF------------MLQSFHQSKEYDKPIYGMN 67 (264)
Q Consensus 7 ki~i~~~~~~~a~~~~~~l~~~~~-------~~~~~~~Dlii~iGGDGT------------~L~a~~~~~~~~~PilGIn 67 (264)
-|+|+....-.-..+.+-+.+.-- .++.+++|.+|.=| -|+ +..+.+.+...++|+|||=
T Consensus 2 mI~Iid~g~gNi~si~~al~~lG~~~~ii~~~~~l~~~d~lIlPG-vGsf~~~~~~L~~~~l~~~i~~~~~~~~PiLGIC 80 (204)
T PRK13141 2 MIAIIDYGMGNLHSVSKALERLGAEAIITSDPEEILAADAVILPG-VGAFPDAMQNLRERGLVEVIKEAVASGKPLLGIC 80 (204)
T ss_pred EEEEEECCCCHHHHHHHHHHHCCCCEEEECCHHHHHHCCEEEECC-CCCCHHHHHHHHHCCCHHHHHHHHHCCCCEEEEH
T ss_conf 899997897589999999998699899979999984089899868-8750568776465392999999986599689754
Q ss_pred CCC
Q ss_conf 343
Q gi|254780754|r 68 CGS 70 (264)
Q Consensus 68 ~G~ 70 (264)
.|.
T Consensus 81 lGm 83 (204)
T PRK13141 81 LGM 83 (204)
T ss_pred HHH
T ss_conf 989
No 160
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type; InterPro: IPR012846 Two groups of proteins form acetolactate from two molecules of pyruvate. The type of acetolactate synthase described in this entry also catalyzes the formation of acetohydroxybutyrate from pyruvate and 2-oxobutyrate, an early step in the branched chain amino acid biosynthesis; it is therefore also termed acetohydroxyacid synthase. In bacteria, this catalytic chain is associated with a smaller regulatory chain in an alpha2/beta2 heterotetramer. Acetolactate synthase is a thiamine pyrophosphate enzyme. In this type, FAD and Mg++ are also found. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.; GO: 0000287 magnesium ion binding, 0003984 acetolactate synthase activity, 0030976 thiamin pyrophosphate binding, 0050660 FAD binding, 0009082 branched chain family amino acid biosynthetic process.
Probab=37.50 E-value=25 Score=15.90 Aligned_cols=35 Identities=20% Similarity=0.453 Sum_probs=21.0
Q ss_pred CEEEEECCCHHHHHHHHHHH---HCCCEEEEECC--CCCC
Q ss_conf 79999879548999999974---12872994153--4332
Q gi|254780754|r 38 DVIVVLGGDGFMLQSFHQSK---EYDKPIYGMNC--GSVG 72 (264)
Q Consensus 38 Dlii~iGGDGT~L~a~~~~~---~~~~PilGIn~--G~lG 72 (264)
..||+|=|||.|+=.++.+. .+++||.=|.+ +.||
T Consensus 462 ~~Vi~i~GDGsF~Mn~QEL~t~~~y~iPV~i~iLNN~~LG 501 (593)
T TIGR00118 462 ETVICITGDGSFQMNLQELSTIVQYDIPVKIVILNNRYLG 501 (593)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCC
T ss_conf 6647875387321234678899871896499984589656
No 161
>cd06335 PBP1_ABC_ligand_binding_like_2 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=36.53 E-value=32 Score=15.20 Aligned_cols=55 Identities=16% Similarity=0.317 Sum_probs=34.3
Q ss_pred EEEEEEECCC----HHHHHHHHHHHHHCCCCCHHHCCEEEEECCC--HHHHHHHHHHHHCCCEEEEECC
Q ss_conf 0599995599----8999999999987078884557799998795--4899999997412872994153
Q gi|254780754|r 6 QKIHFKASNA----KKAQEAYDKFVKIYGNSTSEEADVIVVLGGD--GFMLQSFHQSKEYDKPIYGMNC 68 (264)
Q Consensus 6 ~ki~i~~~~~----~~a~~~~~~l~~~~~~~~~~~~Dlii~iGGD--GT~L~a~~~~~~~~~PilGIn~ 68 (264)
+|+.++.-|. .++.+..++|.. +..+..++|+- +..+-++..+...++|+++...
T Consensus 39 r~ielv~~D~~~~p~~a~~~a~~Li~--------~~~V~aviG~~~S~~~~A~~~~~~~~~vp~i~~~a 99 (347)
T cd06335 39 RKLELVERDDRGNPARGLQNAQELAA--------DEKVVAVLGGLHTPVALANLEFIQQNKIPLIGPWA 99 (347)
T ss_pred EEEEEEEECCCCCHHHHHHHHHHHHH--------CCCCEEEECCCCCHHHHHHHHHHHHCCEEEECCCC
T ss_conf 78799984799998999999999995--------49926874577722345532157757943863676
No 162
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=36.13 E-value=32 Score=15.16 Aligned_cols=25 Identities=12% Similarity=0.239 Sum_probs=11.3
Q ss_pred CEEEEEEECCCH---HHHHHHHHHHHHC
Q ss_conf 505999955998---9999999999870
Q gi|254780754|r 5 IQKIHFKASNAK---KAQEAYDKFVKIY 29 (264)
Q Consensus 5 ~~ki~i~~~~~~---~a~~~~~~l~~~~ 29 (264)
-|||.|+.++.. -++.....+.+.+
T Consensus 2 ~MKIlfi~~~l~~~GGaErvl~~La~~L 29 (361)
T PRK09922 2 KMKIAFIGEAVSGFGGMETVISNVINTF 29 (361)
T ss_pred CEEEEEECCCCCCCCCHHHHHHHHHHHH
T ss_conf 7099999999999880499999999999
No 163
>PRK10218 GTP-binding protein; Provisional
Probab=35.73 E-value=33 Score=15.12 Aligned_cols=32 Identities=19% Similarity=0.313 Sum_probs=22.6
Q ss_pred ECCEEEEECCCC-HHHHHHH---CCCEE-EEECCCEE
Q ss_conf 035079822665-0446752---29817-74088605
Q gi|254780754|r 151 VCDGLVVSTPIG-STAYNFS---ALGPI-LPLESRHL 182 (264)
Q Consensus 151 ~~DGvivSTptG-STAY~lS---aGGpI-v~p~~~~~ 182 (264)
|-.|++||.-+| +|||+|. ..|.+ |.|+.++.
T Consensus 483 r~~G~lis~~~g~~t~yal~~lq~rg~lfv~pg~~vy 519 (607)
T PRK10218 483 RQNGVLISNGQGKAVAFALFGLQDRGKLFLGHGAEVY 519 (607)
T ss_pred CCCEEEEECCCCEEHHHHHHHHHHCCCEEECCCCCEE
T ss_conf 6651379757761789877538754536736999668
No 164
>cd03141 GATase1_Hsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein (EcHsp31). This group includes EcHsp31 and Saccharomyces cerevisiae Ydr533c protein. EcHsp31 has chaperone activity. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1 domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For EcHsp31, this Cys together with a different His and, an Asp (rather than a Glu) residue form a different
Probab=35.66 E-value=33 Score=15.12 Aligned_cols=46 Identities=22% Similarity=0.367 Sum_probs=36.0
Q ss_pred CCCCCHHHCCEEEEECCCHHHH---------HHHHHHHHCCCEEEEECCCCCCCC
Q ss_conf 0788845577999987954899---------999997412872994153433201
Q gi|254780754|r 29 YGNSTSEEADVIVVLGGDGFML---------QSFHQSKEYDKPIYGMNCGSVGFL 74 (264)
Q Consensus 29 ~~~~~~~~~Dlii~iGGDGT~L---------~a~~~~~~~~~PilGIn~G~lGFL 74 (264)
..+.+.++.|.|+.-||-|+|- +.++.+...++||-.|-.|--+++
T Consensus 83 l~~v~~~~ydai~~pGG~g~m~dl~~~~~l~~l~~~~~~~gk~vaaiCHGp~~L~ 137 (221)
T cd03141 83 LSDVDPSDYDAIFIPGGHGPMFDLPDNPDLQDLLREFYENGKVVAAVCHGPAALL 137 (221)
T ss_pred HHHCCHHHCCEEEECCCCCHHHHHHCCHHHHHHHHHHHHCCCEEEEECCHHHHHH
T ss_conf 6789987883899899854587744169999999999974985999763079887
No 165
>cd03139 GATase1_PfpI_2 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=35.58 E-value=33 Score=15.11 Aligned_cols=37 Identities=24% Similarity=0.427 Sum_probs=26.1
Q ss_pred HHHCCEEEEECCCHH--------HHHHHHHHHHCCCEEEEECCCC
Q ss_conf 455779999879548--------9999999741287299415343
Q gi|254780754|r 34 SEEADVIVVLGGDGF--------MLQSFHQSKEYDKPIYGMNCGS 70 (264)
Q Consensus 34 ~~~~Dlii~iGGDGT--------~L~a~~~~~~~~~PilGIn~G~ 70 (264)
..++|++++-||.|. ++..++........+.+|-+|.
T Consensus 60 ~~~~D~lvvpGg~~~~~~~~~~~l~~~Lr~~~~~g~~i~siCtGa 104 (183)
T cd03139 60 PPDLDVLLVPGGGGTRALVNDPALLDFIRRQAARAKYVTSVCTGA 104 (183)
T ss_pred CCCCCEEEECCCCCHHHHCCCHHHHHHHHHHHHCCCEEEEECHHH
T ss_conf 675899998799874530489899999999876198389873767
No 166
>PRK09836 DNA-binding transcriptional activator CusR; Provisional
Probab=35.41 E-value=33 Score=15.09 Aligned_cols=86 Identities=13% Similarity=0.281 Sum_probs=55.5
Q ss_pred EEEEEEECCCHHHHHHHHHHHHH-CCC------------CCHHHCCEEEEE----CCCH-HHHHHHHHHHHCCCEEEEEC
Q ss_conf 05999955998999999999987-078------------884557799998----7954-89999999741287299415
Q gi|254780754|r 6 QKIHFKASNAKKAQEAYDKFVKI-YGN------------STSEEADVIVVL----GGDG-FMLQSFHQSKEYDKPIYGMN 67 (264)
Q Consensus 6 ~ki~i~~~~~~~a~~~~~~l~~~-~~~------------~~~~~~Dlii~i----GGDG-T~L~a~~~~~~~~~PilGIn 67 (264)
|||.++.++...++.+...|.+. |.. .....+|+++.= ++|| .+++..|.. ..++||+=+.
T Consensus 1 MkILiVEDd~~l~~~l~~~L~~~G~~v~~a~~g~~a~~~~~~~~~DlvilDi~lP~~~G~~l~~~iR~~-~~~~PII~Lt 79 (226)
T PRK09836 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDIVRMLRSA-NKGMPILLLT 79 (226)
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHH-CCCCEEEEEE
T ss_conf 989999399999999999998789999998999999999851899999988999999872043567761-6796099994
Q ss_pred C-------------CCCCCCCCCCCHHHHHHHHHHCCC
Q ss_conf 3-------------433201044587899986642012
Q gi|254780754|r 68 C-------------GSVGFLMNEYCIENLVERLSVAVE 92 (264)
Q Consensus 68 ~-------------G~lGFL~~~~~~~~~~~~l~~~~~ 92 (264)
. |-=.|++-+|..+++...+.....
T Consensus 80 a~~~~~d~i~~l~~GADDYl~KPf~~~EL~aRi~allr 117 (226)
T PRK09836 80 ALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLR 117 (226)
T ss_pred CCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHC
T ss_conf 45898899999976996886368767999999999966
No 167
>pfam10620 MdcG Phosphoribosyl-dephospho-CoA transferase MdcG. MdcG is a phosphoribosyl-dephospho-CoA transferase that is involved in the biosynthesis of the prosthetic group of malonate decarboxylase. Malonate decarboxylase from Klebsiella pneumoniae contains an acyl carrier protein (MdcC) to which a 2'-(5' '-phosphoribosyl)-3'-dephospho-CoA prosthetic group is attached via phosphodiester linkage. MdcG catalyses the following reaction: 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA + apo-[acyl-carrier-protein] = holo-[acyl-carrier-protein] + diphosphate.
Probab=35.30 E-value=23 Score=16.14 Aligned_cols=88 Identities=19% Similarity=0.214 Sum_probs=47.1
Q ss_pred EECCCCHHHHHHHCCCEEEEECCCEEEEECC-CCCCHHHHHHCC--C--CCCCEEEEEECCCCCCEEEEEECCEEC-CCC
Q ss_conf 8226650446752298177408860586303-543301111002--7--884148999748788758999889881-487
Q gi|254780754|r 157 VSTPIGSTAYNFSALGPILPLESRHLLLTPV-SPFKPRRWHGAI--L--PNDVMIEIQVLEHKQRPVIATADRLAI-EPV 230 (264)
Q Consensus 157 vSTptGSTAY~lSaGGpIv~p~~~~~~itpI-~p~~l~~~rplV--l--~~~~~I~i~i~~~~~~~~~~~~D~~~~-~~~ 230 (264)
.--++||.||-+..|=|.++++++.=++... .+.......-.+ + ...-+|..++.-+....+.. .|. .+.
T Consensus 115 ~~gv~GS~~~qlaTgl~~l~~~SDLDLli~~~~~~~~~~l~~~l~~l~~~~~~RiDgel~~p~G~~va~----rE~~~~~ 190 (210)
T pfam10620 115 AWGVYGSAGWQLATGLPYLHASSDLDLLIRPPSPLQARALLALLQALEAELPCRLDGELETPDGAAVAW----RELAGAA 190 (210)
T ss_pred CEEEEHHHHHHHHHCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEECH----HHHHCCC
T ss_conf 667631489999749741268888317973798778999999999997447982379998899984519----9973798
Q ss_pred CEEEEEECCCCCEEEEECCC
Q ss_conf 78999987995189996488
Q gi|254780754|r 231 SRINVTQSSDITMRILSDSH 250 (264)
Q Consensus 231 ~~i~I~~s~~~~~~li~~~~ 250 (264)
.+|.++.. + .++|+.++.
T Consensus 191 ~~VL~Kt~-~-g~~L~~~p~ 208 (210)
T pfam10620 191 ARVLVKTA-D-GVRLVEDPA 208 (210)
T ss_pred CCEEEECC-C-CCEEECCCC
T ss_conf 84788749-9-878805756
No 168
>cd06334 PBP1_ABC_ligand_binding_like_1 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=34.73 E-value=34 Score=15.02 Aligned_cols=55 Identities=15% Similarity=0.230 Sum_probs=33.5
Q ss_pred EEEEEEECC----CHHHHHHHHHHHHHCCCCCHHHCCEEEEECCCHH--HHHHHHHHHHCCCEEEEECCC
Q ss_conf 059999559----9899999999998707888455779999879548--999999974128729941534
Q gi|254780754|r 6 QKIHFKASN----AKKAQEAYDKFVKIYGNSTSEEADVIVVLGGDGF--MLQSFHQSKEYDKPIYGMNCG 69 (264)
Q Consensus 6 ~ki~i~~~~----~~~a~~~~~~l~~~~~~~~~~~~Dlii~iGGDGT--~L~a~~~~~~~~~PilGIn~G 69 (264)
.||.++.-| .+++.+..++|.. -|-+++++|.|| .+-.+..+...++|++....+
T Consensus 39 rkielv~~Dd~~~p~~a~~~a~kLi~---------~d~V~~i~g~~s~~~~A~~~~~~~~~vp~i~~~~~ 99 (351)
T cd06334 39 VKLEWEECDTGYEVPRGVECYERLKG---------EDGAVAFQGWSTGITEALIPKIAADKIPLMSGSYG 99 (351)
T ss_pred EEEEEEEECCCCCHHHHHHHHHHHHH---------CCCEEEECCCCCHHHHHHHHHHHHHCCCEEECCCC
T ss_conf 79899982399998999999999985---------39826656888678999999999819928952468
No 169
>TIGR01368 CPSaseIIsmall carbamoyl-phosphate synthase, small subunit; InterPro: IPR006274 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates , . CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate . The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain . CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites . The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein . The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP . There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia . CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains . This entry represents the small subunit of the glutamine-dependent form (6.3.5.5 from EC) of carbamoyl phosphate synthase, CPSase II. The small subunit catalyses the hydrolysis of glutamine to ammonia, which in turn used by the large chain to synthesize carbamoyl phosphate. The C-terminal domain of the small subunit of CPSase has glutamine amidotransferase activity. Note that the sequence from the mammalian urea cycle form has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I (6.3.4.16 from EC). CPSases of pyrimidine biosynthesis, arginine biosynthesis, and the urea cycle may be encoded by one or by several genes, depending on the species. ; GO: 0004086 carbamoyl-phosphate synthase activity, 0006807 nitrogen compound metabolic process.
Probab=34.64 E-value=24 Score=16.02 Aligned_cols=35 Identities=26% Similarity=0.515 Sum_probs=26.3
Q ss_pred HCC-EEEEEC-CCH-H----HHHHHHHHHHCCCEEEEECCCC
Q ss_conf 577-999987-954-8----9999999741287299415343
Q gi|254780754|r 36 EAD-VIVVLG-GDG-F----MLQSFHQSKEYDKPIYGMNCGS 70 (264)
Q Consensus 36 ~~D-lii~iG-GDG-T----~L~a~~~~~~~~~PilGIn~G~ 70 (264)
+|| +.|+=| ||= . .+..+|++....+|++||=+||
T Consensus 237 ~PDGiflSNGPGDPH~~~~~~i~~~~~l~~~~~P~fGICLGH 278 (383)
T TIGR01368 237 NPDGIFLSNGPGDPHAAVEPAIETVRELLEAKIPIFGICLGH 278 (383)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHH
T ss_conf 788899908798805678999999999984489710026668
No 170
>pfam01936 DUF88 Protein of unknown function DUF88. This highly conserved bacterial protein has no known function. The alignment contains many conserved aspartates, suggesting an enzymatic function such as an endonuclease or glycosyl hydrolase (Bateman A pers. obs).
Probab=34.53 E-value=34 Score=15.00 Aligned_cols=32 Identities=22% Similarity=0.364 Sum_probs=23.5
Q ss_pred HCCEEEEECCCHHHHHHHHHHHHCCCEEEEEC
Q ss_conf 57799998795489999999741287299415
Q gi|254780754|r 36 EADVIVVLGGDGFMLQSFHQSKEYDKPIYGMN 67 (264)
Q Consensus 36 ~~Dlii~iGGDGT~L~a~~~~~~~~~PilGIn 67 (264)
.+|.++.+.|||-|..+++.....++.+.++-
T Consensus 89 ~~d~~ilvsgD~Df~~~~~~lr~~g~~v~~~~ 120 (140)
T pfam01936 89 NPDTFVLVSGDGDFAPLLERLRERGKRVEVLG 120 (140)
T ss_pred CCCEEEEEECCHHHHHHHHHHHHCCCEEEEEE
T ss_conf 99989999267407999999998899999996
No 171
>TIGR03135 malonate_mdcG holo-ACP synthase, malonate decarboxylase-specific. Malonate decarboxylase, like citrate lyase, has a unique acyl carrier protein subunit with a prosthetic group derived from, and distinct from, coenzyme A. Members of this protein family are the phosphoribosyl-dephospho-CoA transferase specific to the malonate decarboxylase system. This enzyme can also be designated holo-ACP synthase (2.7.7.61). The corresponding component of the citrate lyase system, CitX, shows little or no sequence similarity to this family.
Probab=34.37 E-value=25 Score=15.92 Aligned_cols=36 Identities=25% Similarity=0.169 Sum_probs=27.9
Q ss_pred EECCCCHHHHHHHCCCEEEEECCCEEEEECC-CCCCH
Q ss_conf 8226650446752298177408860586303-54330
Q gi|254780754|r 157 VSTPIGSTAYNFSALGPILPLESRHLLLTPV-SPFKP 192 (264)
Q Consensus 157 vSTptGSTAY~lSaGGpIv~p~~~~~~itpI-~p~~l 192 (264)
.--++||.||-+..|=|.++++++.=++... .|.+.
T Consensus 110 ~~gv~GS~~~ql~TGl~~l~~~SDLDLli~~~~~~~~ 146 (202)
T TIGR03135 110 PWGVYGSAGWQLLTGLPYLHASSDLDLLLRAPSPLSL 146 (202)
T ss_pred CEEEEHHHHHHHHHCCCCCCCCCCCEEEECCCCHHHH
T ss_conf 7566313999997697512689882078727987779
No 172
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=34.27 E-value=35 Score=14.98 Aligned_cols=82 Identities=18% Similarity=0.087 Sum_probs=41.7
Q ss_pred EECCEEEEECCCCHHHHHHHCC----CEEEE-ECCCEEEEEC--CCCCCHHHHHHCCCCCCC--EEEEEECCCCCCEEEE
Q ss_conf 1035079822665044675229----81774-0886058630--354330111100278841--4899974878875899
Q gi|254780754|r 150 LVCDGLVVSTPIGSTAYNFSAL----GPILP-LESRHLLLTP--VSPFKPRRWHGAILPNDV--MIEIQVLEHKQRPVIA 220 (264)
Q Consensus 150 ~~~DGvivSTptGSTAY~lSaG----GpIv~-p~~~~~~itp--I~p~~l~~~rplVl~~~~--~I~i~i~~~~~~~~~~ 220 (264)
+..-++++-+.+||--+.-+.+ -|+.. +..+++-+.| ||||.... . ..++ .+.--+......+.+.
T Consensus 111 ~~~G~~~~G~SAGa~~~~~~~~tt~~~~~~~~~~~~gLgllp~~i~pHy~~~-~----g~~R~~rl~~~~~~~~~~~gig 185 (212)
T cd03146 111 LERGVVYIGWSAGSNCWFPSIGTTDSMPIELPPSFNGLGLLPFQICPHYDSE-D----GETREERFHEFLEAGPTEPVIA 185 (212)
T ss_pred HHCCCEEEEECCCHHHHCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCC-C----CCCHHHHHHHHHHHCCCCEEEE
T ss_conf 9779889998615776167767468887433134561024166246775888-7----6427999999998299970899
Q ss_pred EECCEEC--CCCCEEEEE
Q ss_conf 9889881--487789999
Q gi|254780754|r 221 TADRLAI--EPVSRINVT 236 (264)
Q Consensus 221 ~~D~~~~--~~~~~i~I~ 236 (264)
++|+.-+ .+...+++.
T Consensus 186 idegtal~v~g~~~~~v~ 203 (212)
T cd03146 186 LDEGAALHVVGDGVADLL 203 (212)
T ss_pred EECCEEEEEECCEEEEEE
T ss_conf 838989999899889996
No 173
>cd00502 DHQase_I Type I 3-dehydroquinase, (3-dehydroquinate dehydratase or DHQase.) Catalyzes the cis-dehydration of 3-dehydroquinate via a covalent imine intermediate to produce dehydroshikimate. Dehydroquinase is the third enzyme in the shikimate pathway, which is involved in the biosynthesis of aromatic amino acids. Type I DHQase exists as a homodimer. Type II 3-dehydroquinase also catalyzes the same overall reaction, but is unrelated in terms of sequence and structure, and utilizes a completely different reaction mechanism.
Probab=34.18 E-value=35 Score=14.97 Aligned_cols=30 Identities=30% Similarity=0.272 Sum_probs=12.6
Q ss_pred CCEEE-EECCCCC-CCCCCCCCHHHHHHHHHHCC
Q ss_conf 87299-4153433-20104458789998664201
Q gi|254780754|r 60 DKPIY-GMNCGSV-GFLMNEYCIENLVERLSVAV 91 (264)
Q Consensus 60 ~~Pil-GIn~G~l-GFL~~~~~~~~~~~~l~~~~ 91 (264)
..|++ .+.+=.- |.+ +.+.++..+.+..+.
T Consensus 55 ~~piI~T~R~~~eGG~~--~~~~~~~~~ll~~~~ 86 (225)
T cd00502 55 PLPIIFTVRTKSEGGNF--EGSEEEYLELLEEAL 86 (225)
T ss_pred CCCEEEEECCHHHCCCC--CCCHHHHHHHHHHHH
T ss_conf 99889997567768998--899999999999999
No 174
>PRK12306 uvrC excinuclease ABC subunit C; Reviewed
Probab=33.80 E-value=35 Score=14.93 Aligned_cols=26 Identities=23% Similarity=0.249 Sum_probs=11.1
Q ss_pred CCEEEEEEEC-CCHHHHHHHHHHHHHC
Q ss_conf 6505999955-9989999999999870
Q gi|254780754|r 4 NIQKIHFKAS-NAKKAQEAYDKFVKIY 29 (264)
Q Consensus 4 ~~~ki~i~~~-~~~~a~~~~~~l~~~~ 29 (264)
+...+-|+.. .-.+|.-+-..|++.+
T Consensus 55 ~i~~ie~ivt~sE~EALlLE~nLIK~~ 81 (519)
T PRK12306 55 AIRDIEFIVTDNEVEAFLLENTLIKKH 81 (519)
T ss_pred HHHCEEEEEECCHHHHHHHHHHHHHHH
T ss_conf 873479999698899999999998674
No 175
>COG0710 AroD 3-dehydroquinate dehydratase [Amino acid transport and metabolism]
Probab=33.54 E-value=30 Score=15.35 Aligned_cols=52 Identities=17% Similarity=0.151 Sum_probs=26.3
Q ss_pred HCCEEEEECCCHHHHHHHHHHHHC---CCEEEEECCCCC-CCCCCCCCHHHHHHHHHHCCC
Q ss_conf 577999987954899999997412---872994153433-201044587899986642012
Q gi|254780754|r 36 EADVIVVLGGDGFMLQSFHQSKEY---DKPIYGMNCGSV-GFLMNEYCIENLVERLSVAVE 92 (264)
Q Consensus 36 ~~Dlii~iGGDGT~L~a~~~~~~~---~~PilGIn~G~l-GFL~~~~~~~~~~~~l~~~~~ 92 (264)
..|+.= .+..++..+...... .+.++.+.+-.= |.. +.+.+...+.+.++..
T Consensus 34 RvD~l~---~~~~~~~~~~~~~e~~~~~~~IfT~R~~~EGG~~--~~~~~~~i~ll~~la~ 89 (231)
T COG0710 34 RVDLLE---SNVEVLEVAKALREKDPDKPLIFTFRTVKEGGEF--PGSEEEYIELLKKLAE 89 (231)
T ss_pred EECHHC---CCCHHHHHHHHHHHHCCCCCEEEEEEEHHHCCCC--CCCHHHHHHHHHHHHH
T ss_conf 630103---6403888999999862578659998406446887--7887899999999985
No 176
>PRK00558 uvrC excinuclease ABC subunit C; Validated
Probab=33.51 E-value=36 Score=14.90 Aligned_cols=26 Identities=19% Similarity=0.351 Sum_probs=11.1
Q ss_pred CCEEEEEEEC-CCHHHHHHHHHHHHHC
Q ss_conf 6505999955-9989999999999870
Q gi|254780754|r 4 NIQKIHFKAS-NAKKAQEAYDKFVKIY 29 (264)
Q Consensus 4 ~~~ki~i~~~-~~~~a~~~~~~l~~~~ 29 (264)
+...+-|+.. .-.+|.-+-..|++.+
T Consensus 63 ~i~~ie~ivt~sE~EALlLE~~LIK~~ 89 (609)
T PRK00558 63 QIADIEYIVTRSETEALLLENNLIKKY 89 (609)
T ss_pred HHHCEEEEEECCHHHHHHHHHHHHHHH
T ss_conf 862478999699899999999998675
No 177
>PRK09939 putative oxidoreductase; Provisional
Probab=33.37 E-value=36 Score=14.88 Aligned_cols=33 Identities=18% Similarity=0.313 Sum_probs=12.8
Q ss_pred HCCEEEEECCCHH-----HHHHHHHHHHCCCEEEEECC
Q ss_conf 5779999879548-----99999997412872994153
Q gi|254780754|r 36 EADVIVVLGGDGF-----MLQSFHQSKEYDKPIYGMNC 68 (264)
Q Consensus 36 ~~Dlii~iGGDGT-----~L~a~~~~~~~~~PilGIn~ 68 (264)
++|+|+++|-.=+ ||.+++.+.+.+.+|+-||.
T Consensus 208 ~aD~I~viG~Np~tnHPrml~~L~~a~~rGakII~iNP 245 (759)
T PRK09939 208 KCDLVICIGHNPGTNHPRMLTSLRALVKRGAKMIAINP 245 (759)
T ss_pred HCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCEEEECC
T ss_conf 49889998458574588999999999987995899899
No 178
>COG1013 PorB Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit [Energy production and conversion]
Probab=33.35 E-value=31 Score=15.29 Aligned_cols=24 Identities=21% Similarity=0.297 Sum_probs=10.8
Q ss_pred CCHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf 9548999999974128729941534
Q gi|254780754|r 45 GDGFMLQSFHQSKEYDKPIYGMNCG 69 (264)
Q Consensus 45 GDGT~L~a~~~~~~~~~PilGIn~G 69 (264)
||+.+|+++.++... ..+|++.+|
T Consensus 22 G~~~~l~~i~~a~~~-~~~l~~~~~ 45 (294)
T COG1013 22 GEFIILKLLTQALGD-RAELGNATG 45 (294)
T ss_pred CCHHHHHHHHHHCCC-CHHHCCCCC
T ss_conf 834999999985040-033336889
No 179
>cd03375 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor. In the TCA cycle, OGFOR catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA. In the reductive tricarboxylic acid cycle found in the anaerobic autotroph Hydrogenobacter thermophilus, OGFOR catalyzes the reductive carboxylation of succinyl-CoA to produce 2-oxoglutarate. Thauera aromatica OGFOR has been shown to provide reduced ferredoxin to benzoyl-CoA reductase, a key enzyme in the anaerobic metabolism of aromatic compounds. OGFOR is dependent on TPP and a divalent metal cation for activity.
Probab=33.18 E-value=36 Score=14.86 Aligned_cols=13 Identities=31% Similarity=0.664 Sum_probs=7.0
Q ss_pred CCHHHHHHHHHHH
Q ss_conf 9548999999974
Q gi|254780754|r 45 GDGFMLQSFHQSK 57 (264)
Q Consensus 45 GDGT~L~a~~~~~ 57 (264)
|++..++++.++.
T Consensus 6 gh~~~~~~~~~a~ 18 (193)
T cd03375 6 GDGSILKALAKAL 18 (193)
T ss_pred CCHHHHHHHHHHH
T ss_conf 8789999999999
No 180
>PTZ00300 pyruvate kinase; Provisional
Probab=32.84 E-value=37 Score=14.83 Aligned_cols=35 Identities=20% Similarity=0.139 Sum_probs=29.1
Q ss_pred EEECCEEEEECCCCHHHHHHHCCCEEEEECCCEEEEECC
Q ss_conf 210350798226650446752298177408860586303
Q gi|254780754|r 149 ELVCDGLVVSTPIGSTAYNFSALGPILPLESRHLLLTPV 187 (264)
Q Consensus 149 ~~~~DGvivSTptGSTAY~lSaGGpIv~p~~~~~~itpI 187 (264)
...+..+++-|-+|+||.-+|.-- |..+.+.+||-
T Consensus 346 ~~~a~aIv~~T~sG~tA~~vs~~R----P~~pI~a~t~~ 380 (454)
T PTZ00300 346 ETKAKALVVLSNTGRSARLVAKYR----PNCPIVCVTTR 380 (454)
T ss_pred HCCCCEEEEECCCCHHHHHHHHHC----CCCCEEEECCC
T ss_conf 569989999828858999999659----79999998987
No 181
>PRK09206 pyruvate kinase; Provisional
Probab=32.77 E-value=37 Score=14.82 Aligned_cols=36 Identities=25% Similarity=0.163 Sum_probs=29.4
Q ss_pred EEEECCEEEEECCCCHHHHHHHCCCEEEEECCCEEEEECC
Q ss_conf 1210350798226650446752298177408860586303
Q gi|254780754|r 148 PELVCDGLVVSTPIGSTAYNFSALGPILPLESRHLLLTPV 187 (264)
Q Consensus 148 ~~~~~DGvivSTptGSTAY~lSaGGpIv~p~~~~~~itpI 187 (264)
....+..+++-|-+|+||..+|.- .|..+.+.+||-
T Consensus 367 ~~~~a~aIv~~T~sG~ta~~is~~----RP~~pI~a~t~~ 402 (470)
T PRK09206 367 EKLDAPLIVVATQGGKSARSVRKY----FPDATILALTTN 402 (470)
T ss_pred HHCCCCEEEEECCCCHHHHHHHHC----CCCCCEEEECCC
T ss_conf 865998999985873899999703----999988998898
No 182
>PRK11340 phosphodiesterase YaeI; Provisional
Probab=32.37 E-value=37 Score=14.78 Aligned_cols=60 Identities=15% Similarity=0.155 Sum_probs=28.4
Q ss_pred EEEEEEECCCHH---HHHHHHHHHHHCCCCCHHHCCEEEEECC--C-H------HHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 059999559989---9999999998707888455779999879--5-4------89999999741287299415343
Q gi|254780754|r 6 QKIHFKASNAKK---AQEAYDKFVKIYGNSTSEEADVIVVLGG--D-G------FMLQSFHQSKEYDKPIYGMNCGS 70 (264)
Q Consensus 6 ~ki~i~~~~~~~---a~~~~~~l~~~~~~~~~~~~Dlii~iGG--D-G------T~L~a~~~~~~~~~PilGIn~G~ 70 (264)
.||..+++-.-. ..+..+++.+. ....+||+|+.-|. | . .++...+.+. ...|+++|- |+
T Consensus 49 lrI~~lSDlH~g~~~~~~~l~~~v~~---~n~~~PDlVv~tGD~vd~~~~~~~~~~~~~l~~L~-~~~gvyaVl-GN 120 (270)
T PRK11340 49 FKILFLADLHYSRFVPLSLISDAIAL---GIEQKPDLILLGGDYVLFDMPLNFSAFSDVLSPLA-ECAPTFACF-GN 120 (270)
T ss_pred CEEEEEECCCCCCCCCHHHHHHHHHH---HHHCCCCEEEECCCEECCCCCHHHHHHHHHHHHCC-CCCCEEEEC-CC
T ss_conf 58999925668898898999999999---87129999998676344777210799999987401-338859973-78
No 183
>PRK09483 response regulator; Provisional
Probab=32.35 E-value=37 Score=14.78 Aligned_cols=89 Identities=13% Similarity=0.224 Sum_probs=49.0
Q ss_pred CEEEEEEECCCHHHHHHHHHHHHHCCC-------C---------CHHHCCEEEE----ECCCHH-HHHHHHHHHHCCCEE
Q ss_conf 505999955998999999999987078-------8---------8455779999----879548-999999974128729
Q gi|254780754|r 5 IQKIHFKASNAKKAQEAYDKFVKIYGN-------S---------TSEEADVIVV----LGGDGF-MLQSFHQSKEYDKPI 63 (264)
Q Consensus 5 ~~ki~i~~~~~~~a~~~~~~l~~~~~~-------~---------~~~~~Dlii~----iGGDGT-~L~a~~~~~~~~~Pi 63 (264)
|+|+.++ ++.+--.+..+.+.+.... . ....+|+++. -|.||. +++..+... ..+||
T Consensus 1 Mi~VlIv-DDh~l~r~gl~~~L~~~~~~~vv~~a~~~~~~l~~~~~~~pDvvllDl~lp~~~Gl~~~~~i~~~~-p~~~v 78 (216)
T PRK09483 1 MINVLLV-DDHELVRAGIRRILEDIKGIKVVGEASCGEDAVKWCRTNAVDVVLMDMNMPGIGGLEATRKILRST-PDVKI 78 (216)
T ss_pred CCEEEEE-CCCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHC-CCCCE
T ss_conf 9589998-499999999999997489958999989999999999855999999868898987523778887408-99857
Q ss_pred EEEC-------------CCCCCCCCCCCCHHHHHHHHHHCCCCCC
Q ss_conf 9415-------------3433201044587899986642012432
Q gi|254780754|r 64 YGMN-------------CGSVGFLMNEYCIENLVERLSVAVECTF 95 (264)
Q Consensus 64 lGIn-------------~G~lGFL~~~~~~~~~~~~l~~~~~~~~ 95 (264)
+-+- .|--||+.-+.+.+++.+++..+..+..
T Consensus 79 ivls~~~~~~~~~~al~~Ga~gyl~K~~~~~~l~~ai~~v~~G~~ 123 (216)
T PRK09483 79 IMLTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVHSGQR 123 (216)
T ss_pred EEECCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCC
T ss_conf 863056632889999974887899479999999999999985997
No 184
>pfam07685 GATase_3 CobB/CobQ-like glutamine amidotransferase domain.
Probab=32.35 E-value=37 Score=14.78 Aligned_cols=45 Identities=24% Similarity=0.553 Sum_probs=31.4
Q ss_pred CCCHHHCCEEEEECCCHH-----------HHHHHHHHHHCCCEEEEECCCCCCCCCC
Q ss_conf 888455779999879548-----------9999999741287299415343320104
Q gi|254780754|r 31 NSTSEEADVIVVLGGDGF-----------MLQSFHQSKEYDKPIYGMNCGSVGFLMN 76 (264)
Q Consensus 31 ~~~~~~~Dlii~iGGDGT-----------~L~a~~~~~~~~~PilGIn~G~lGFL~~ 76 (264)
...++++|+++.=||==| |..+++.+...+.||+|| ||-+=+|..
T Consensus 2 ~~~p~~~D~lilpGg~~~~~~~~~~~~~~~~~~i~~~~~~G~pi~gi-CGG~q~Lg~ 57 (158)
T pfam07685 2 DALPGDADLVILPGGKPTIQDLALLRNSGLDEALREHAEAGGPILGI-CGGYQMLGE 57 (158)
T ss_pred CCCCCCCCEEEECCCCCHHHHHHHHHHCCHHHHHHHHHHCCCCEEEE-CHHHHHHHH
T ss_conf 98999987999899540999999987755799999999779969998-758898765
No 185
>cd00332 PAL-HAL Phenylalanine ammonia-lyase (PAL) and histidine ammonia-lyase (HAL) and. PAL and HAL are members of the Lyase class I_like superfamily of enzymes that, catalyze similar beta-elimination reactions and are active as homotetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. PAL, present in plants and fungi, catalyzes the conversion of L-phenylalanine to E-cinnamic acid. HAL, found in several bacteria and animals, catalyzes the conversion of L-histidine to E-urocanic acid . Both PAL and HAL contain the cofactor 3, 5-dihydro-5-methylidene-4H-imidazol-4-one (MIO) which is formed by autocatalytic excision/cyclization of the internal tripeptide, Ala-Ser-Gly. PAL is being explored as enzyme substitution therapy for Phenylketonuria (PKU), a disorder which involves an inability to metabolize phenylalanine. HAL failure in humans results in the disease histidinemia.
Probab=32.18 E-value=33 Score=15.09 Aligned_cols=19 Identities=42% Similarity=0.768 Sum_probs=13.1
Q ss_pred HHCCCEEEEECCCCCCCCCC
Q ss_conf 41287299415343320104
Q gi|254780754|r 57 KEYDKPIYGMNCGSVGFLMN 76 (264)
Q Consensus 57 ~~~~~PilGIn~G~lGFL~~ 76 (264)
...+.||+|||+|= |-+.+
T Consensus 39 ~~~g~~iYGvnTGf-G~~~~ 57 (444)
T cd00332 39 AAEGKPVYGVNTGF-GALAD 57 (444)
T ss_pred HHCCCCEEEECCCC-CCCCC
T ss_conf 96599033315774-78778
No 186
>PRK12689 flgF flagellar basal body rod protein FlgF; Reviewed
Probab=32.01 E-value=33 Score=15.07 Aligned_cols=41 Identities=22% Similarity=0.375 Sum_probs=20.7
Q ss_pred EECCEEEEEEEECCEEEEECCCCHHHHHHHCCCEEE-EECCCEEEEEC
Q ss_conf 667876531210350798226650446752298177-40886058630
Q gi|254780754|r 140 KVDDQVRLPELVCDGLVVSTPIGSTAYNFSALGPIL-PLESRHLLLTP 186 (264)
Q Consensus 140 ~id~~~~~~~~~~DGvivSTptGSTAY~lSaGGpIv-~p~~~~~~itp 186 (264)
.-||.|. .-.||.+| |+.|- +-++.+|||. +|....+.|.|
T Consensus 106 TR~G~F~---~d~~G~Lv-t~~G~--~Vl~~~gpi~~~p~~~~i~I~~ 147 (253)
T PRK12689 106 TRDGALE---INAQGQLV-TSSGY--PVLGTGGPIVFQPTDTDINISP 147 (253)
T ss_pred EECCCEE---ECCCCCEE-ECCCC--EEECCCCCEEECCCCCCEEECC
T ss_conf 7546167---98998689-08998--8167999726089886337768
No 187
>LOAD_uvrC_endov consensus
Probab=31.92 E-value=38 Score=14.73 Aligned_cols=55 Identities=16% Similarity=0.238 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHCCC--CCHHHCCEEEEECCCHHHHHHHHHHHHC---CCEEEEECCCC
Q ss_conf 8999999999987078--8845577999987954899999997412---87299415343
Q gi|254780754|r 16 KKAQEAYDKFVKIYGN--STSEEADVIVVLGGDGFMLQSFHQSKEY---DKPIYGMNCGS 70 (264)
Q Consensus 16 ~~a~~~~~~l~~~~~~--~~~~~~Dlii~iGGDGT~L~a~~~~~~~---~~PilGIn~G~ 70 (264)
+.-..+.+-+..++.. .....||++++=||=|-+=++...+... ++|++|+--+.
T Consensus 58 dD~~amrEv~~rr~~~~~~~~~~PDLilIDGg~~ql~~~~~~l~~lg~~~ip~iglAK~~ 117 (123)
T LOAD_uvrC_endo 58 PDYLAFREVLTRRYASKKLELKLPDLILVDGGGGQHPRALGVASHLGVLGIPVIGVAKNL 117 (123)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHCCCCCCCEEEEEECC
T ss_conf 849999999999999875458899899987967788999999998699898589998089
No 188
>cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes.
Probab=31.63 E-value=35 Score=14.92 Aligned_cols=33 Identities=12% Similarity=0.194 Sum_probs=13.4
Q ss_pred EEECCCHHHHHHHHHHHHCCCE---EEEECCCCCCC
Q ss_conf 9987954899999997412872---99415343320
Q gi|254780754|r 41 VVLGGDGFMLQSFHQSKEYDKP---IYGMNCGSVGF 73 (264)
Q Consensus 41 i~iGGDGT~L~a~~~~~~~~~P---ilGIn~G~lGF 73 (264)
+++..-|+....+.++.....| +..-..|.+||
T Consensus 15 ivv~d~G~~~~~~~~~~~~~~~~~~~~~~~~g~mG~ 50 (168)
T cd00568 15 IVVNDAGNSAYWAYRYLPLRRGRRFLTSTGFGAMGY 50 (168)
T ss_pred EEEECCHHHHHHHHHHCCCCCCCEEECCCCCCHHHH
T ss_conf 999875276999999756289995982898753777
No 189
>PRK13181 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=31.54 E-value=38 Score=14.69 Aligned_cols=63 Identities=19% Similarity=0.306 Sum_probs=36.8
Q ss_pred EEEEECCCHHHHHHHHHHHHHCC-------CCCHHHCCEEEEEC-CC-HH---------HHHHHHHHHHCCCEEEEECCC
Q ss_conf 99995599899999999998707-------88845577999987-95-48---------999999974128729941534
Q gi|254780754|r 8 IHFKASNAKKAQEAYDKFVKIYG-------NSTSEEADVIVVLG-GD-GF---------MLQSFHQSKEYDKPIYGMNCG 69 (264)
Q Consensus 8 i~i~~~~~~~a~~~~~~l~~~~~-------~~~~~~~Dlii~iG-GD-GT---------~L~a~~~~~~~~~PilGIn~G 69 (264)
|.++.......+.+.+.+.+.-- .++.+++|.+|.=| |- ++ +..+.+.+...++|+|||=.|
T Consensus 2 I~IiD~G~~n~~si~r~l~~lg~~~~i~~~~~~l~~~d~lIlPGvG~~~~~~~~l~~~~~~~~i~~~~~~~~PiLGIClG 81 (199)
T PRK13181 2 IAIIDYGAGNLRSVANALKRLGVEAVVSSDPEEIEGADKVILPGVGAFGQAMAALRESGLDEAIKEHVEKKQPVLGICLG 81 (199)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEECCHHHHHHHHCEECCCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCEEEEEEE
T ss_conf 99998896099999999998698099979999974211004579865330256665638679999999769988998042
Q ss_pred C
Q ss_conf 3
Q gi|254780754|r 70 S 70 (264)
Q Consensus 70 ~ 70 (264)
.
T Consensus 82 m 82 (199)
T PRK13181 82 M 82 (199)
T ss_pred E
T ss_conf 6
No 190
>PRK13767 ATP-dependent helicase; Provisional
Probab=31.53 E-value=14 Score=17.53 Aligned_cols=26 Identities=15% Similarity=0.206 Sum_probs=21.5
Q ss_pred HHCCEEEEECCCHHHHHHHHHHHHCC
Q ss_conf 55779999879548999999974128
Q gi|254780754|r 35 EEADVIVVLGGDGFMLQSFHQSKEYD 60 (264)
Q Consensus 35 ~~~Dlii~iGGDGT~L~a~~~~~~~~ 60 (264)
-+.|+||-+|-=+++-+..++....+
T Consensus 357 G~Vd~Viq~gsP~svarllQR~GRsG 382 (878)
T PRK13767 357 GYIDLVVLLGSPKSVSRLLQRIGRAG 382 (878)
T ss_pred CCCCEEEECCCCHHHHHHHHHHCCCC
T ss_conf 75258997589611899999833578
No 191
>pfam01174 SNO SNO glutamine amidotransferase family. This family and its amidotransferase domain was first described in. It is predicted that members of this family are involved in the pyridoxine biosynthetic pathway, based on the proximity and co-regulation of the corresponding genes and physical interaction between the members of pfam01174 and pfam01680.
Probab=31.43 E-value=33 Score=15.10 Aligned_cols=39 Identities=23% Similarity=0.432 Sum_probs=22.5
Q ss_pred CCHHHCCEEEEECCC-HHHHH---------HHHHHH-HCCCEEEEECCCC
Q ss_conf 884557799998795-48999---------999974-1287299415343
Q gi|254780754|r 32 STSEEADVIVVLGGD-GFMLQ---------SFHQSK-EYDKPIYGMNCGS 70 (264)
Q Consensus 32 ~~~~~~Dlii~iGGD-GT~L~---------a~~~~~-~~~~PilGIn~G~ 70 (264)
++.+++|-+|-=||- +++-+ +++.+. ..++|+|||=.|-
T Consensus 29 ~di~~ad~LILPGg~s~~~~~ll~~~gl~~~l~e~i~~~~kPiLGIClGM 78 (188)
T pfam01174 29 EDLAQCDALIIPGGESTAMSLLAKRYGFYEPLYEFVHNPNKPIWGTCAGL 78 (188)
T ss_pred HHHHCCCEEEECCCCHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEHHHHH
T ss_conf 99940898998898879999999986888999999980799663331446
No 192
>TIGR01382 PfpI intracellular protease, PfpI family; InterPro: IPR006286 Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad . This group of cysteine peptidases belong to MEROPS peptidase family C56 (Pfp1 endopeptidase, clan PC(C)). The member of this family from Pyrococcus horikoshii has been solved to 2 Angstrom resolution. It is an ATP-independent intracellular protease that crystallises as a hexameric ring. Cys-101 is proposed as the active site residue in a catalytic triad with the adjacent His-102 and a Glu residue from an adjacent monomer. A member of this family from Bacillus subtilis, GSP18, has been shown to be expressed in response to several forms of stress. A role in the degradation of small peptides has been suggested. This family is contained in a larger one of the thiamine biosynthesis protein ThiJ and its homologs.; GO: 0016798 hydrolase activity acting on glycosyl bonds.
Probab=31.18 E-value=39 Score=14.66 Aligned_cols=38 Identities=21% Similarity=0.370 Sum_probs=19.9
Q ss_pred CCCHHHCCEEEEECCCH-H--------HHHHHHHHHHCCCEEEEECC
Q ss_conf 88845577999987954-8--------99999997412872994153
Q gi|254780754|r 31 NSTSEEADVIVVLGGDG-F--------MLQSFHQSKEYDKPIYGMNC 68 (264)
Q Consensus 31 ~~~~~~~Dlii~iGGDG-T--------~L~a~~~~~~~~~PilGIn~ 68 (264)
+.+++++|.+++-||-+ - +.+-+|.|.+.++||-.|=.
T Consensus 71 ~v~~~~YDal~ipGG~a~~e~LR~d~~~~~lvR~f~e~gK~vaaICh 117 (189)
T TIGR01382 71 DVDPEDYDALVIPGGRASPEYLRLDEKVIRLVREFVEKGKPVAAICH 117 (189)
T ss_pred CCCHHHCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEC
T ss_conf 47852564789717735600014876899999998417881999845
No 193
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=31.04 E-value=39 Score=14.64 Aligned_cols=35 Identities=26% Similarity=0.387 Sum_probs=20.0
Q ss_pred HCCEEEEECCCHHHH----------HHHHHHHHCCCEEEEECCCC
Q ss_conf 577999987954899----------99999741287299415343
Q gi|254780754|r 36 EADVIVVLGGDGFML----------QSFHQSKEYDKPIYGMNCGS 70 (264)
Q Consensus 36 ~~Dlii~iGGDGT~L----------~a~~~~~~~~~PilGIn~G~ 70 (264)
++|.|+.-|||=..+ .+++.......++.|...|-
T Consensus 83 ~a~~i~~~GG~q~~~~~~~~~t~~~~~l~~~~~~G~vi~G~SAGA 127 (217)
T cd03145 83 DADGIFFTGGDQLRITSALGGTPLLDALRKVYRGGVVIGGTSAGA 127 (217)
T ss_pred CCCEEEECCCCHHHHHHHHHCCCHHHHHHHHHHCCCEEEECCHHH
T ss_conf 499899938999999999963969999999998699488411788
No 194
>TIGR01127 ilvA_1Cterm threonine dehydratase; InterPro: IPR005789 Serine and threonine dehydratases , are functionally and structurally related pyridoxal-phosphate dependent enzymes. L-serine dehydratase () and D-serine dehydratase () catalyze the dehydratation of L-serine (respectively D-serine) into ammonia and pyruvate. Threonine dehydratase () (TDH) catalyzes the dehydratation of threonine into alpha-ketobutarate and ammonia. In Escherichia coli and other microorganisms, two classes of TDH are known to exist. One is involved in the biosynthesis of isoleucine, the other in hydroxamino acid catabolism. Threonine synthase () is also a pyridoxal-phosphate enzyme, it catalyzes the transformation of homoserine-phosphate into threonine. It has been shown that threonine synthase is distantly related to the serine/threonine dehydratases. In all these enzymes, the pyridoxal-phosphate group is attached to a lysine residue. A form of threonine dehydratase with two copies of the C-terminal domain is described by . This model describes a phylogenetically distinct which branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any domain. Many members of this model are found in species with other isoleucine biosynthetic enzymes.; GO: 0004794 L-threonine ammonia-lyase activity.
Probab=30.32 E-value=40 Score=14.57 Aligned_cols=166 Identities=14% Similarity=0.183 Sum_probs=76.0
Q ss_pred CCCHHHHHHHHHHHHHCCC-----------------------CCHHHCC-EEEEECCCHHHH---HHHHHHHHCCCEEEE
Q ss_conf 5998999999999987078-----------------------8845577-999987954899---999997412872994
Q gi|254780754|r 13 SNAKKAQEAYDKFVKIYGN-----------------------STSEEAD-VIVVLGGDGFML---QSFHQSKEYDKPIYG 65 (264)
Q Consensus 13 ~~~~~a~~~~~~l~~~~~~-----------------------~~~~~~D-lii~iGGDGT~L---~a~~~~~~~~~PilG 65 (264)
++.++|.+.+.++.+.-+. ++.-+.| +|+.+||=|-+= .|+++. ..++-|+|
T Consensus 102 ~~~DEA~~~A~~~~~~~g~~fvHpF~D~~vmAGQGTigLEi~ed~pd~D~viVPVGGGGLISGv~~a~K~~-~P~VkvIG 180 (381)
T TIGR01127 102 ADYDEAYALAEELAEEEGRVFVHPFDDEYVMAGQGTIGLEIMEDLPDVDTVIVPVGGGGLISGVASAAKKL-NPEVKVIG 180 (381)
T ss_pred CCHHHHHHHHHHHHHHCCCEEEEECCCCEEEECCCHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHH-CCCCEEEE
T ss_conf 87078999999999860987874058877861674899999964798137998417871287999999872-89947998
Q ss_pred ECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEEEEECCCCCC----CEEEEEEEEEEEEECCCCCCEEEEEEEEEEE
Q ss_conf 153433201044587899986642012432034434542124444----2015775347997268764236788898766
Q gi|254780754|r 66 MNCGSVGFLMNEYCIENLVERLSVAVECTFHPLKMTVFDYDNSIC----AENILAINEVSIIRKPGQNQLVQAAKLEVKV 141 (264)
Q Consensus 66 In~G~lGFL~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~----~~~~~AlNEi~i~r~~~~~~~~~~~~~~v~i 141 (264)
|.+ ...+.+.+.|.+. +...-+......+|-.. ..+|--+-|.| .==|.+
T Consensus 181 V~a---------E~ap~m~~Sl~~G---k~~~v~~~~tiADGIaVk~pG~lTF~i~k~~V--------------D~~V~V 234 (381)
T TIGR01127 181 VEA---------EGAPSMVESLREG---KIKAVESVDTIADGIAVKKPGDLTFNIVKEYV--------------DEVVAV 234 (381)
T ss_pred EEC---------CCCHHHHHHHHCC---CEEEECCCCEEECCCEECCCCCCCHHHHHHHC--------------CCEEEE
T ss_conf 602---------7855899998519---90560456414152116378876747899747--------------970884
Q ss_pred CCEE-------EEEEEECCEEEEECCCCHHHHHHHCCCEEEEECCCEE-EEEC---CCCCCHHH--HHHCCCCCCCEEEE
Q ss_conf 7876-------5312103507982266504467522981774088605-8630---35433011--11002788414899
Q gi|254780754|r 142 DDQV-------RLPELVCDGLVVSTPIGSTAYNFSALGPILPLESRHL-LLTP---VSPFKPRR--WHGAILPNDVMIEI 208 (264)
Q Consensus 142 d~~~-------~~~~~~~DGvivSTptGSTAY~lSaGGpIv~p~~~~~-~itp---I~p~~l~~--~rplVl~~~~~I~i 208 (264)
|++. .+|+ +=||+=|+|-+|=+==..+=+=.+.=+-+ ++.. |.+-.++. .|.| +.+.+.+.|
T Consensus 235 ~eeEIA~A~~~LLEr----~Ki~aEGAGA~gvAA~L~~K~~~~kG~K~~~v~SGGNID~~~l~~iI~kGL-~~~GR~v~I 309 (381)
T TIGR01127 235 DEEEIAKAILLLLER----AKIVAEGAGAVGVAAVLEDKVDYVKGKKVAVVVSGGNIDLNLLEKIILKGL-VKSGRKVRI 309 (381)
T ss_pred CHHHHHHHHHHHHCC----CCEEECCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHH-HCCCCEEEE
T ss_conf 737799999998607----747882745899999997540368982899998547768667778865522-205836999
Q ss_pred EE
Q ss_conf 97
Q gi|254780754|r 209 QV 210 (264)
Q Consensus 209 ~i 210 (264)
+.
T Consensus 310 ~~ 311 (381)
T TIGR01127 310 ET 311 (381)
T ss_pred EE
T ss_conf 99
No 195
>PRK12640 flgF flagellar basal body rod protein FlgF; Reviewed
Probab=30.27 E-value=38 Score=14.71 Aligned_cols=23 Identities=30% Similarity=0.330 Sum_probs=9.3
Q ss_pred CCEEEEECCCCHHHHHHHCCCEEEEE
Q ss_conf 35079822665044675229817740
Q gi|254780754|r 152 CDGLVVSTPIGSTAYNFSALGPILPL 177 (264)
Q Consensus 152 ~DGvivSTptGSTAY~lSaGGpIv~p 177 (264)
.||.+| |+.|- +-++.+|||.-|
T Consensus 109 ~~G~Lv-t~~G~--~Vl~~~gpI~ip 131 (246)
T PRK12640 109 ANGQLV-TANGL--PVLGDGGPIAVP 131 (246)
T ss_pred CCCCEE-ECCCC--EEECCCCCEECC
T ss_conf 999889-27898--965799963458
No 196
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; InterPro: IPR003700 The panB gene from Escherichia coli encodes the first enzyme of the pantothenate biosynthesis pathway, ketopantoate hydroxymethyltransferase (KPHMT) 2.1.2.11 from EC. Fungal ketopantoate hydroxymethyltransferase is essential for the biosynthesis of coenzyme A, while the pathway intermediate 4'-phosphopantetheine is required for penicillin production .; GO: 0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity, 0015940 pantothenate biosynthetic process.
Probab=30.15 E-value=35 Score=14.94 Aligned_cols=36 Identities=22% Similarity=0.422 Sum_probs=26.6
Q ss_pred HCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCCCC
Q ss_conf 5779999879548999999974128729941534332010
Q gi|254780754|r 36 EADVIVVLGGDGFMLQSFHQSKEYDKPIYGMNCGSVGFLM 75 (264)
Q Consensus 36 ~~Dlii~iGGDGT~L~a~~~~~~~~~PilGIn~G~lGFL~ 75 (264)
.++.|=.=||.--+..+++.+-...+||+ ||+|--.
T Consensus 109 gA~avKLEGG~P~~~e~v~~LT~~GvpV~----GH~GLtP 144 (267)
T TIGR00222 109 GADAVKLEGGEPELVETVKALTEEGVPVV----GHLGLTP 144 (267)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEE----ECCCCCC
T ss_conf 77657620788068899999862784587----4147887
No 197
>PRK08199 acetolactate synthase 2 catalytic subunit; Validated
Probab=29.77 E-value=41 Score=14.51 Aligned_cols=33 Identities=15% Similarity=0.200 Sum_probs=19.6
Q ss_pred EEEEECCCCHHHHHH--HCCCEEEEECCCEEEEEC
Q ss_conf 079822665044675--229817740886058630
Q gi|254780754|r 154 GLVVSTPIGSTAYNF--SALGPILPLESRHLLLTP 186 (264)
Q Consensus 154 GvivSTptGSTAY~l--SaGGpIv~p~~~~~~itp 186 (264)
+-.++...||=||.+ +.|..+..|+-++++++.
T Consensus 401 ~~~~~~~~GsmG~glpaAiGa~la~p~r~Vv~i~G 435 (553)
T PRK08199 401 RTQLAPTSGSMGYGLPAAIAAKLLYPERTVVAFAG 435 (553)
T ss_pred CEEECCCCCCCCCHHHHHHHHHHHCCCCEEEEEEC
T ss_conf 70424689864322889999998299981899988
No 198
>cd00288 Pyruvate_Kinase Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors. Like other allosteric enzymes, PK has a high substrate affinity R state and a low affinity T state. PK exists as several different isozymes, depending on organism and tissue type. In mammals, there are four PK isozymes: R, found in red blood cells, L, found in liver, M1, found in skeletal muscle, and M2, found in kidney, adipose tissue, and lung. PK forms a homotetramer, with each subunit containing three domains. The T state to R state transition of PK is more complex than in most allosteric enzymes, involving a concerted rotation of all 3 domains of each monomer in the homotetramer.
Probab=29.72 E-value=41 Score=14.50 Aligned_cols=35 Identities=29% Similarity=0.201 Sum_probs=28.9
Q ss_pred EEECCEEEEECCCCHHHHHHHCCCEEEEECCCEEEEECC
Q ss_conf 210350798226650446752298177408860586303
Q gi|254780754|r 149 ELVCDGLVVSTPIGSTAYNFSALGPILPLESRHLLLTPV 187 (264)
Q Consensus 149 ~~~~DGvivSTptGSTAY~lSaGGpIv~p~~~~~~itpI 187 (264)
+..+..+++-|-+|+||..+|.-- |..+.+.+||=
T Consensus 373 ~~~a~aIv~~T~sG~tA~~is~~R----P~~pI~a~t~~ 407 (480)
T cd00288 373 ELGAKAIVVLTTSGRTARLVSKYR----PNAPIIAVTRN 407 (480)
T ss_pred HCCCCEEEEECCCCHHHHHHHHHC----CCCCEEEECCC
T ss_conf 469989999879858999999659----79999998598
No 199
>PRK06354 pyruvate kinase; Provisional
Probab=29.57 E-value=41 Score=14.49 Aligned_cols=36 Identities=31% Similarity=0.317 Sum_probs=26.7
Q ss_pred EEEECCEEEEECCCCHHHHHHHCCCEEEEECCCEEEEECC
Q ss_conf 1210350798226650446752298177408860586303
Q gi|254780754|r 148 PELVCDGLVVSTPIGSTAYNFSALGPILPLESRHLLLTPV 187 (264)
Q Consensus 148 ~~~~~DGvivSTptGSTAY~lSaGGpIv~p~~~~~~itpI 187 (264)
.+..+.-+++.|-+|+||..+|.-- |..+.+.+||-
T Consensus 373 ~~l~a~aIv~~T~SG~TAr~vSk~R----P~~pIiA~T~~ 408 (589)
T PRK06354 373 RQLDAAAIVTLTKSGATARNVSKFR----PKTPILAVTPN 408 (589)
T ss_pred HHCCCCEEEEECCCCHHHHHHHHHC----CCCCEEEECCC
T ss_conf 8669989999889818999999549----89989998998
No 200
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=29.38 E-value=42 Score=14.47 Aligned_cols=90 Identities=13% Similarity=0.166 Sum_probs=51.4
Q ss_pred CEEEEE-EECCCHHHHHHHHHHHHHCCC-------C---------CHHHCCEEEE---EC----CCHH-HHHHHHHHHHC
Q ss_conf 505999-955998999999999987078-------8---------8455779999---87----9548-99999997412
Q gi|254780754|r 5 IQKIHF-KASNAKKAQEAYDKFVKIYGN-------S---------TSEEADVIVV---LG----GDGF-MLQSFHQSKEY 59 (264)
Q Consensus 5 ~~ki~i-~~~~~~~a~~~~~~l~~~~~~-------~---------~~~~~Dlii~---iG----GDGT-~L~a~~~~~~~ 59 (264)
|+||.+ ++++.+--..-.+.+.+.... . ...++|+++. +. |||- +++.++... .
T Consensus 1 M~~irIlIvDDh~lvr~Gl~~~L~~~~~~~vvg~a~~~~~~~~~~~~~~pDvvllDl~mpg~~~~dGl~~~~~i~~~~-p 79 (216)
T PRK10840 1 MNNMNVIIADDHPIVLFGIRKSLEQIEWVNVVGEFEDSTALINNLPKLDAHVLITDLSMPGDKYGDGITLIKYIKRHF-P 79 (216)
T ss_pred CCCCEEEEECCHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHC-C
T ss_conf 998889998897999999999981599968999879999999998623989899826779998878999999999858-9
Q ss_pred CCEEEEE--C-----------CCCCCCCCCCCCHHHHHHHHHHCCCCCC
Q ss_conf 8729941--5-----------3433201044587899986642012432
Q gi|254780754|r 60 DKPIYGM--N-----------CGSVGFLMNEYCIENLVERLSVAVECTF 95 (264)
Q Consensus 60 ~~PilGI--n-----------~G~lGFL~~~~~~~~~~~~l~~~~~~~~ 95 (264)
+++|+-+ + .|--||+.-...++++.+++..+..+..
T Consensus 80 ~~~vivls~~~~~~~v~~al~~Ga~Gyl~K~~~~~~L~~AI~~v~~G~~ 128 (216)
T PRK10840 80 SLSIIVLTMNNNPAILSAVLDLDIEGIVLKQGAPTDLPKALAALQKGKK 128 (216)
T ss_pred CCEEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCC
T ss_conf 9808998477878999999858974899878999999999999987994
No 201
>TIGR03567 FMN_reduc_SsuE FMN reductase, SsuE family. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the homodimeric, NAD(P)H-dependent enzyme SsuE from Escherichia coli, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. It is induced by sulfate starvation. The NADH-dependent enzyme MsuE from Pseudomonas aeruginosa is outside the scope of this model (see model TIGR03566).
Probab=29.14 E-value=25 Score=15.84 Aligned_cols=19 Identities=47% Similarity=0.740 Sum_probs=14.1
Q ss_pred ECCEEEEECCCCHHHHHHHCCCE
Q ss_conf 03507982266504467522981
Q gi|254780754|r 151 VCDGLVVSTPIGSTAYNFSALGP 173 (264)
Q Consensus 151 ~~DGvivSTptGSTAY~lSaGGp 173 (264)
.+||+||+||. |+-|--|.
T Consensus 65 ~ADglIiatP~----Y~~S~sG~ 83 (171)
T TIGR03567 65 QADGVVVATPV----YKASYSGV 83 (171)
T ss_pred HCCEEEEECCC----CCCCCCHH
T ss_conf 57945997553----16777889
No 202
>PRK09522 bifunctional anthranilate synthase/anthranilate phosphoribosyltransferase; Provisional
Probab=28.87 E-value=43 Score=14.41 Aligned_cols=65 Identities=18% Similarity=0.186 Sum_probs=40.3
Q ss_pred CEEEEEEECCCHHHHHHHHHHHHHCCC------C-----CHH-----HCCEEEEECCCHH------HHHHHHHHHHCCCE
Q ss_conf 505999955998999999999987078------8-----845-----5779999879548------99999997412872
Q gi|254780754|r 5 IQKIHFKASNAKKAQEAYDKFVKIYGN------S-----TSE-----EADVIVVLGGDGF------MLQSFHQSKEYDKP 62 (264)
Q Consensus 5 ~~ki~i~~~~~~~a~~~~~~l~~~~~~------~-----~~~-----~~Dlii~iGGDGT------~L~a~~~~~~~~~P 62 (264)
|+||-++.|...=.-.+...+...-.+ . ..+ ++|.||.=.|=|+ ++...+.+ ..++|
T Consensus 1 M~~ILlIDNyDSFTyNL~~~l~~~g~~v~V~rnd~~~~~~~e~~~~~~p~~IVlSPGPG~P~dag~~~~ii~~~-~~~iP 79 (531)
T PRK09522 1 MADILLLDNIDSFTYNLADQLRSNGHNVVIYRNHIPAQTLIERLATMSNPVLMLSPGPGVPSEAGCMPELLTRL-RGKLP 79 (531)
T ss_pred CCEEEEEECCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHCCCCEEEECCCCCCCHHCCCHHHHHHHH-CCCCC
T ss_conf 97099982888628899999986699569996998313019999724959699899998902365739999986-59999
Q ss_pred EEEECCCC
Q ss_conf 99415343
Q gi|254780754|r 63 IYGMNCGS 70 (264)
Q Consensus 63 ilGIn~G~ 70 (264)
||||=+|+
T Consensus 80 ILGICLGh 87 (531)
T PRK09522 80 IIGICLGH 87 (531)
T ss_pred EEEECHHH
T ss_conf 89987877
No 203
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=28.76 E-value=28 Score=15.60 Aligned_cols=13 Identities=23% Similarity=0.422 Sum_probs=9.4
Q ss_pred ECCEEEEECCCCH
Q ss_conf 0350798226650
Q gi|254780754|r 151 VCDGLVVSTPIGS 163 (264)
Q Consensus 151 ~~DGvivSTptGS 163 (264)
++++|+||.||||
T Consensus 133 r~esVlV~ApTss 145 (1041)
T COG4581 133 RGESVLVCAPTSS 145 (1041)
T ss_pred CCCCEEEECCCCC
T ss_conf 7995799733789
No 204
>PRK09628 oorB 2-oxoglutarate-acceptor oxidoreductase subunit OorB; Reviewed
Probab=28.53 E-value=43 Score=14.37 Aligned_cols=32 Identities=31% Similarity=0.636 Sum_probs=20.7
Q ss_pred CCHHHHHHHHHHHHC------CC-EEEEECC-CCCCCCCC
Q ss_conf 954899999997412------87-2994153-43320104
Q gi|254780754|r 45 GDGFMLQSFHQSKEY------DK-PIYGMNC-GSVGFLMN 76 (264)
Q Consensus 45 GDGT~L~a~~~~~~~------~~-PilGIn~-G~lGFL~~ 76 (264)
|||.+|+++.++.+. ++ -+-||.| |++-.+++
T Consensus 23 G~g~Il~~l~~A~~elg~~~~~~vvvsGIGCS~r~~~Y~~ 62 (281)
T PRK09628 23 GDGVILKSIIRAIDKLGWNMDDVCVVSGIGCSGRFSSYVN 62 (281)
T ss_pred CCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCEEE
T ss_conf 7689999999999981999554899947873530337176
No 205
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=28.46 E-value=43 Score=14.36 Aligned_cols=32 Identities=22% Similarity=0.605 Sum_probs=25.8
Q ss_pred EEEEECCCHH----HHHHHHHHHHC-CCEEEEECCCC
Q ss_conf 9999879548----99999997412-87299415343
Q gi|254780754|r 39 VIVVLGGDGF----MLQSFHQSKEY-DKPIYGMNCGS 70 (264)
Q Consensus 39 lii~iGGDGT----~L~a~~~~~~~-~~PilGIn~G~ 70 (264)
-|+..|--|| |-+++|..... +.||+.||||-
T Consensus 270 tVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaA 306 (560)
T COG3829 270 TVLILGESGTGKELFARAIHNLSPRANGPFIAINCAA 306 (560)
T ss_pred CEEEECCCCCCHHHHHHHHHHCCCCCCCCEEEEECCC
T ss_conf 2899537886689999998744843479807876433
No 206
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=28.44 E-value=43 Score=14.36 Aligned_cols=20 Identities=25% Similarity=0.454 Sum_probs=15.1
Q ss_pred HCCEEEEECCCHHHHHHHHHH
Q ss_conf 577999987954899999997
Q gi|254780754|r 36 EADVIVVLGGDGFMLQSFHQS 56 (264)
Q Consensus 36 ~~Dlii~iGGDGT~L~a~~~~ 56 (264)
++|+||.+|| |..+-+++-.
T Consensus 86 ~~D~IiavGG-GSviD~AKai 105 (381)
T PRK10624 86 GADYLIAIGG-GSPQDTCKAI 105 (381)
T ss_pred CCCEEEEECC-CHHHHHHHHH
T ss_conf 9998998089-4088899999
No 207
>PRK11517 transcriptional regulatory protein YedW; Provisional
Probab=28.32 E-value=44 Score=14.35 Aligned_cols=85 Identities=18% Similarity=0.400 Sum_probs=52.7
Q ss_pred EEEEEEECCCHHHHHHHHHHHHH-CCC------------CCHHHCCEEEE----ECCCHH-HHHHHHHHHHCCCEEEEEC
Q ss_conf 05999955998999999999987-078------------88455779999----879548-9999999741287299415
Q gi|254780754|r 6 QKIHFKASNAKKAQEAYDKFVKI-YGN------------STSEEADVIVV----LGGDGF-MLQSFHQSKEYDKPIYGMN 67 (264)
Q Consensus 6 ~ki~i~~~~~~~a~~~~~~l~~~-~~~------------~~~~~~Dlii~----iGGDGT-~L~a~~~~~~~~~PilGIn 67 (264)
|||.++.++...++.+...|.+. |.. ...+.+|+++. =|+||. +++..|.. .++||+=+.
T Consensus 1 MkILiVEDd~~l~~~l~~~L~~~g~~V~~a~~g~~al~~~~~~~~DlvilDi~lP~~dG~~l~~~iR~~--~~~pII~lt 78 (223)
T PRK11517 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQILQTLRTA--KQTPVICLT 78 (223)
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHC--CCCCEEEEE
T ss_conf 989999698999999999999889999998999999999852899999984999873689999999856--886489995
Q ss_pred C-------------CCCCCCCCCCCHHHHHHHHHHCCC
Q ss_conf 3-------------433201044587899986642012
Q gi|254780754|r 68 C-------------GSVGFLMNEYCIENLVERLSVAVE 92 (264)
Q Consensus 68 ~-------------G~lGFL~~~~~~~~~~~~l~~~~~ 92 (264)
. |-=.|++-+|+.+++...+.....
T Consensus 79 a~~~~~d~i~~l~~GADDYl~KPf~~~EL~aRi~a~lr 116 (223)
T PRK11517 79 ARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLR 116 (223)
T ss_pred CCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHC
T ss_conf 65565789999983987762089778999999999964
No 208
>TIGR00888 guaA_Nterm GMP synthase, N-terminal domain; InterPro: IPR004739 The N-terminal region of GMP synthase 6.3.5.2 from EC is recognised by this signature. GMP synthase catalyzes the synthesis of GMP from XMP , . ATP + xanthosine 5'-phosphate + L-glutamine + H(2)O = AMP + diphosphate + GMP + L-glutamate ; GO: 0003922 GMP synthase (glutamine-hydrolyzing) activity, 0005524 ATP binding, 0006177 GMP biosynthetic process.
Probab=28.30 E-value=33 Score=15.12 Aligned_cols=22 Identities=18% Similarity=0.256 Sum_probs=16.0
Q ss_pred HHHHHHHHHHCCCEEEEECCCC
Q ss_conf 9999999741287299415343
Q gi|254780754|r 49 MLQSFHQSKEYDKPIYGMNCGS 70 (264)
Q Consensus 49 ~L~a~~~~~~~~~PilGIn~G~ 70 (264)
=-++.....+.++|||||=.|+
T Consensus 59 ~~~~~~~if~LgVPvLGICYG~ 80 (195)
T TIGR00888 59 APEADEKIFELGVPVLGICYGM 80 (195)
T ss_pred CHHHHHHHHHCCCCEEEEEHHH
T ss_conf 5022488862799688762457
No 209
>pfam00221 PAL Phenylalanine and histidine ammonia-lyase.
Probab=28.27 E-value=44 Score=14.34 Aligned_cols=19 Identities=37% Similarity=0.737 Sum_probs=13.3
Q ss_pred HHCCCEEEEECCCCCCCCCC
Q ss_conf 41287299415343320104
Q gi|254780754|r 57 KEYDKPIYGMNCGSVGFLMN 76 (264)
Q Consensus 57 ~~~~~PilGIn~G~lGFL~~ 76 (264)
...+.||+|||+|= |-+.+
T Consensus 44 ~~~g~~iYGvnTGf-G~~~~ 62 (477)
T pfam00221 44 VAEGRPVYGVNTGF-GALAD 62 (477)
T ss_pred HHCCCEEEEECCCC-CCCCC
T ss_conf 96599033315774-78778
No 210
>cd03169 GATase1_PfpI_1 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=28.24 E-value=44 Score=14.34 Aligned_cols=42 Identities=21% Similarity=0.382 Sum_probs=29.7
Q ss_pred CCCCHHHCCEEEEECCCHH--------HHHHHHHHHHCCCEEEEECCCCC
Q ss_conf 7888455779999879548--------99999997412872994153433
Q gi|254780754|r 30 GNSTSEEADVIVVLGGDGF--------MLQSFHQSKEYDKPIYGMNCGSV 71 (264)
Q Consensus 30 ~~~~~~~~Dlii~iGGDGT--------~L~a~~~~~~~~~PilGIn~G~l 71 (264)
.+...+++|.++.-||-|+ +++-++.+...++|+-.|-.|-.
T Consensus 70 ~dv~~~~yDai~iPGG~g~~~l~~d~~~~~li~~~~~~gK~iaaIChgp~ 119 (180)
T cd03169 70 DEVDPDDYDALVIPGGRAPEYLRLDEKVLAIVRHFAEANKPVAAICHGPQ 119 (180)
T ss_pred HHCCHHHCCEEEECCCCCHHHHHCCHHHHHHHHHHHHCCCEEEEECCHHH
T ss_conf 78986109999989982287771197999999999981996997781689
No 211
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=27.89 E-value=28 Score=15.54 Aligned_cols=24 Identities=17% Similarity=0.231 Sum_probs=17.2
Q ss_pred HCCEEEEECCCH-HHHHHHHHHHHC
Q ss_conf 577999987954-899999997412
Q gi|254780754|r 36 EADVIVVLGGDG-FMLQSFHQSKEY 59 (264)
Q Consensus 36 ~~Dlii~iGGDG-T~L~a~~~~~~~ 59 (264)
..|-+|.-|==| +++..-+++...
T Consensus 382 ~ldavi~~g~P~~s~~~~~Q~~GRa 406 (851)
T COG1205 382 SLDAVIAYGYPGVSVLSFRQRAGRA 406 (851)
T ss_pred CEEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 2114530488970288898861103
No 212
>pfam02775 TPP_enzyme_C Thiamine pyrophosphate enzyme, C-terminal TPP binding domain.
Probab=27.84 E-value=27 Score=15.69 Aligned_cols=28 Identities=25% Similarity=0.385 Sum_probs=16.8
Q ss_pred EEEEECCCHHHHHHHHHHH---HCCCEEEEE
Q ss_conf 9999879548999999974---128729941
Q gi|254780754|r 39 VIVVLGGDGFMLQSFHQSK---EYDKPIYGM 66 (264)
Q Consensus 39 lii~iGGDGT~L~a~~~~~---~~~~PilGI 66 (264)
-+|++-|||.|+.....+. ..+.|++=|
T Consensus 48 ~vi~i~GDG~f~~~~~el~Ta~~~~~~i~~i 78 (150)
T pfam02775 48 PVVAIAGDGGFQMNGQELATAVRYNLPITVV 78 (150)
T ss_pred EEEEEECCCCHHCCCCHHHHHHHHCCCCCEE
T ss_conf 4999988972111343799999848885689
No 213
>cd01745 GATase1_2 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=27.75 E-value=45 Score=14.29 Aligned_cols=35 Identities=34% Similarity=0.538 Sum_probs=21.0
Q ss_pred HHCCEEEEECCC-----------------------HHHHHHHHHHHHCCCEEEEECCC
Q ss_conf 557799998795-----------------------48999999974128729941534
Q gi|254780754|r 35 EEADVIVVLGGD-----------------------GFMLQSFHQSKEYDKPIYGMNCG 69 (264)
Q Consensus 35 ~~~Dlii~iGGD-----------------------GT~L~a~~~~~~~~~PilGIn~G 69 (264)
+..|-++.-||. -+=+...+.+...++|+|||=-|
T Consensus 52 ~~lDGliLtGG~Di~p~~yg~~~~~~~~~~~~~RD~~E~~l~~~a~~~~~PilGICRG 109 (189)
T cd01745 52 ELLDGLLLTGGGDVDPPLYGEEPHPELGPIDPERDAFELALLRAALERGKPILGICRG 109 (189)
T ss_pred HHCCEEEECCCCCCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEHHH
T ss_conf 8779999728877881003887776567888668999999999999809876035054
No 214
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator; InterPro: IPR014264 Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC (see Q06065 from SWISSPROT). These proteins have a Fis family DNA binding sequence, a response regulator receiver domain, and sigma-54 interaction domain. They are found strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria, where members of IPR014265 from INTERPRO and IPR014266 from INTERPRO also occur..
Probab=27.56 E-value=45 Score=14.26 Aligned_cols=34 Identities=26% Similarity=0.640 Sum_probs=27.9
Q ss_pred HCC-EEEEECCCHH----HHHHHHHHHHC-CCEEEEECCC
Q ss_conf 577-9999879548----99999997412-8729941534
Q gi|254780754|r 36 EAD-VIVVLGGDGF----MLQSFHQSKEY-DKPIYGMNCG 69 (264)
Q Consensus 36 ~~D-lii~iGGDGT----~L~a~~~~~~~-~~PilGIn~G 69 (264)
.+| -++.+|==|| +=||+|..... +.||+.|||+
T Consensus 163 ~sd~TvllLGESGTGKEV~ArA~H~~S~R~~~~FVAINCA 202 (451)
T TIGR02915 163 PSDITVLLLGESGTGKEVLARALHELSDRKDKRFVAINCA 202 (451)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCEEEEECC
T ss_conf 0000130104667117899989842057897773444167
No 215
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=27.01 E-value=46 Score=14.20 Aligned_cols=17 Identities=6% Similarity=0.067 Sum_probs=9.1
Q ss_pred CHHHCCEEEEECCCHHHH
Q ss_conf 845577999987954899
Q gi|254780754|r 33 TSEEADVIVVLGGDGFML 50 (264)
Q Consensus 33 ~~~~~Dlii~iGGDGT~L 50 (264)
...++|++|+-| ..+.+
T Consensus 80 ~l~~yDiiI~s~-~~~~~ 96 (351)
T cd03804 80 DLSGYDLVISSS-HAVAK 96 (351)
T ss_pred CCCCCCEEEECC-CHHHH
T ss_conf 546899899878-41436
No 216
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase; InterPro: IPR011895 The oxidative decarboxylation of pyruvate to acetyl-CoA, a central step in energy metabolism, can occur by two different mechanisms . In mitochondria and aerobic bacteria this reaction is catalysed by the multienzyme complex pyruvate dehydrogenase using NAD as electron acceptor. In anaerobic organisms, however, this reaction is reversibly catalysed by a single enzyme using either ferrodoxin or flavodoxin as the electron acceptor. Pyruvate:ferrodoxin/flavodoxin reductases (PFORs) in this entry occur in both obligately and facultatively anaerobic bacteria and also some eukaryotic microorganisms. These proteins are single-chain enzymes containing a thiamin pyrophosphate cofactor for the cleavage of carbon-carbon bonds next to a carbonyl group, and iron-sulphur clusters for electron transfer. The Desulfovibrio africanus enzyme is currently the only PFOR whose three dimensional structure is known , . It is a homodimer where each subunit contains one thiamin pyrophosphate cofactor and two ferrodoxin-like 4Fe-S clusters and an atypical 4Fe-S cluster. Each monomer is composed of seven domains - domains I, II and VI make intersubunit contacts, while domains III, IV and V are located at the suface of the dimer, and domain VII forms a long arm extending over the other subunit. The cofactor is bound at the interface of domains I and VI and is proximal to the atypical 4Fe-S bound by domain VI, while the ferrodoxin-like 4Fe-S clusters are bound by domain V. Comparison of this enzyme with the multi-chain PFORs shows a correspondance between the domains in this enzyme and the subunits of the multi-chain enzymes.; GO: 0005506 iron ion binding, 0016903 oxidoreductase activity acting on the aldehyde or oxo group of donors, 0006118 electron transport.
Probab=26.98 E-value=46 Score=14.20 Aligned_cols=58 Identities=19% Similarity=0.312 Sum_probs=38.7
Q ss_pred CEEEEEEEEC----CEEEEECCCCHHHHHH---HCCCEEEEEC--CCEEEEECCCCCCHHHHHHCCCCCCCE
Q ss_conf 8765312103----5079822665044675---2298177408--860586303543301111002788414
Q gi|254780754|r 143 DQVRLPELVC----DGLVVSTPIGSTAYNF---SALGPILPLE--SRHLLLTPVSPFKPRRWHGAILPNDVM 205 (264)
Q Consensus 143 ~~~~~~~~~~----DGvivSTptGSTAY~l---SaGGpIv~p~--~~~~~itpI~p~~l~~~rplVl~~~~~ 205 (264)
|..++..+.+ ||.- |+|.|+|=. +..=|+=.|+ .+|=+=.-+|||+ ..||.++.++..
T Consensus 660 D~lpVS~~~~~GmeDG~f---PlGTt~~EKRgvA~~vP~W~~d~CiqCnqCa~VCPHa--aIR~~l~~~ee~ 726 (1194)
T TIGR02176 660 DDLPVSAFPARGMEDGTF---PLGTTAFEKRGVALEVPVWKSDNCIQCNQCAFVCPHA--AIRPFLLDEEEL 726 (1194)
T ss_pred CCCCHHHHHCCCCCCCCC---CCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHH--HHHHHHCCCHHH
T ss_conf 987657774388868888---6202003453120318705656653478854337647--877764271576
No 217
>pfam00291 PALP Pyridoxal-phosphate dependent enzyme. Members of this family are all pyridoxal-phosphate dependent enzymes. This family includes: serine dehydratase EC:4.2.1.13 P20132, threonine dehydratase EC:4.2.1.16, tryptophan synthase beta chain EC:4.2.1.20, threonine synthase EC:4.2.99.2, cysteine synthase EC:4.2.99.8, cystathionine beta-synthase EC:4.2.1.22, 1-aminocyclopropane-1-carboxylate deaminase EC:4.1.99.4.
Probab=26.92 E-value=46 Score=14.19 Aligned_cols=35 Identities=23% Similarity=0.084 Sum_probs=21.1
Q ss_pred CCEEEEECCCCHHHHHHHCCCEEEEECCCEEEEEC
Q ss_conf 35079822665044675229817740886058630
Q gi|254780754|r 152 CDGLVVSTPIGSTAYNFSALGPILPLESRHLLLTP 186 (264)
Q Consensus 152 ~DGvivSTptGSTAY~lSaGGpIv~p~~~~~~itp 186 (264)
-|-+++++.+|+|+-.++.+=--..|..+.+.+-|
T Consensus 165 ~d~iv~~~G~Gg~~~Gi~~~~k~~~~~~~vi~ve~ 199 (251)
T pfam00291 165 PDAVVVPVGGGGLAAGIARGLKELGPGIRVIGVEP 199 (251)
T ss_pred CCEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEE
T ss_conf 99899717983579999999997299984999932
No 218
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=26.90 E-value=46 Score=14.19 Aligned_cols=29 Identities=21% Similarity=0.241 Sum_probs=12.6
Q ss_pred HCCEEEEECCCHH-----HHHHHHHHHHCCCEEE
Q ss_conf 5779999879548-----9999999741287299
Q gi|254780754|r 36 EADVIVVLGGDGF-----MLQSFHQSKEYDKPIY 64 (264)
Q Consensus 36 ~~Dlii~iGGDGT-----~L~a~~~~~~~~~Pil 64 (264)
++|++.+--.-|. ...++......++|++
T Consensus 76 ~~Dvvh~~~~~~~~~~~~~~~~~~~~~~~~~p~v 109 (366)
T cd03822 76 GPDVVVIQHEYGIFGGEAGLYLLLLLRGLGIPVV 109 (366)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEE
T ss_conf 9999999365332106689999999985599899
No 219
>PRK09935 transcriptional regulator FimZ; Provisional
Probab=26.80 E-value=46 Score=14.18 Aligned_cols=90 Identities=11% Similarity=0.228 Sum_probs=53.6
Q ss_pred CEEEEE-EECCCHHHHHHHHHHHHHCCC-------CC---------HHHCCEEEE----ECCCH-HHHHHHHHHHHCCCE
Q ss_conf 505999-955998999999999987078-------88---------455779999----87954-899999997412872
Q gi|254780754|r 5 IQKIHF-KASNAKKAQEAYDKFVKIYGN-------ST---------SEEADVIVV----LGGDG-FMLQSFHQSKEYDKP 62 (264)
Q Consensus 5 ~~ki~i-~~~~~~~a~~~~~~l~~~~~~-------~~---------~~~~Dlii~----iGGDG-T~L~a~~~~~~~~~P 62 (264)
|+++.+ +.++.+--.+..+.+.+.... .. ...+|+++. -|+|| .+++..+.. ...++
T Consensus 1 M~p~~VlIvDDh~l~r~gl~~~l~~~~~~~vv~~a~~~~~~~~~l~~~~~DvvllD~~lp~~~g~~~i~~i~~~-~p~~~ 79 (210)
T PRK09935 1 MKPASVIIMDEHPIVRMSIEVLLQKNSNIQVVLKTDDSRITIDYLRTYPVDLVILDIELPGTDGFTLLKRIKQI-QETVK 79 (210)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHH-CCCCC
T ss_conf 99788999859699999999999629892899998999999999974799999988999998864056789873-89970
Q ss_pred EEEEC-------------CCCCCCCCCCCCHHHHHHHHHHCCCCCC
Q ss_conf 99415-------------3433201044587899986642012432
Q gi|254780754|r 63 IYGMN-------------CGSVGFLMNEYCIENLVERLSVAVECTF 95 (264)
Q Consensus 63 ilGIn-------------~G~lGFL~~~~~~~~~~~~l~~~~~~~~ 95 (264)
|+-+- .|--||+.-..+.+++.+++..+..+..
T Consensus 80 ilvls~~~~~~~~~~a~~~Ga~g~l~K~~~~~~l~~ai~~v~~G~~ 125 (210)
T PRK09935 80 VLFLSSKSECFYAGRAIRAGANGFVSKRKDLNDIYNAVQMILSGYS 125 (210)
T ss_pred EEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCC
T ss_conf 8997176729999999966877688678999999999999985995
No 220
>TIGR03407 urea_ABC_UrtA urea ABC transporter, urea binding protein. Members of this protein family are ABC transporter substrate-binding proteins associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. Members of this protein family tend to have the twin-arginine signal for Sec-independent transport across the plasma membrane.
Probab=26.74 E-value=46 Score=14.17 Aligned_cols=40 Identities=15% Similarity=0.088 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHCCCCCHHHCCEEEEECCCH--HHHHHHHHHHHCCCEEE
Q ss_conf 9999999999870788845577999987954--89999999741287299
Q gi|254780754|r 17 KAQEAYDKFVKIYGNSTSEEADVIVVLGGDG--FMLQSFHQSKEYDKPIY 64 (264)
Q Consensus 17 ~a~~~~~~l~~~~~~~~~~~~Dlii~iGGDG--T~L~a~~~~~~~~~Pil 64 (264)
++....++|... -.+.+++|+-. +.+-.+..+...+.|++
T Consensus 55 ~a~~~a~kLi~~--------d~V~~viG~~~S~~~~A~~pv~~~~~~~~~ 96 (359)
T TIGR03407 55 TFAEKARKLITQ--------DKVAAVFGCWTSASRKAVLPVFEENNGLLF 96 (359)
T ss_pred HHHHHHHHHHHC--------CCEEEEECCCCCHHHHHHCCHHHHCCCEEE
T ss_conf 999999999960--------990799757775776652516887295378
No 221
>KOG0782 consensus
Probab=26.50 E-value=45 Score=14.28 Aligned_cols=53 Identities=21% Similarity=0.309 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHCCCC--------CHH--------HC-CEEEEECCCHH---HHHHHHHHHHCCC-E--EEEECCC
Q ss_conf 9999999999870788--------845--------57-79999879548---9999999741287-2--9941534
Q gi|254780754|r 17 KAQEAYDKFVKIYGNS--------TSE--------EA-DVIVVLGGDGF---MLQSFHQSKEYDK-P--IYGMNCG 69 (264)
Q Consensus 17 ~a~~~~~~l~~~~~~~--------~~~--------~~-Dlii~iGGDGT---~L~a~~~~~~~~~-P--ilGIn~G 69 (264)
+..+++..+..+++.. .++ -. =-|++-||||| +|.++..+.-... | ||...+|
T Consensus 380 qGsK~lq~f~WyLNPRQVFDlsq~GPK~aLEmyRKV~nLRILaCGGDGTVGWiLStLD~L~l~p~PPvailPLGTG 455 (1004)
T KOG0782 380 QGSKALQTFCWYLNPRQVFDLSQLGPKFALEMYRKVVNLRILACGGDGTVGWILSTLDNLNLPPYPPVAILPLGTG 455 (1004)
T ss_pred CHHHHHHHHHHHCCHHHHEEHHCCCCHHHHHHHHHCCCEEEEEECCCCCEEEHHHHHHHCCCCCCCCEEEEECCCC
T ss_conf 0179999999752746622111148388999987406348998448870432233365347999997268645776
No 222
>PRK10046 dpiA two-component response regulator DpiA; Provisional
Probab=26.39 E-value=47 Score=14.13 Aligned_cols=90 Identities=18% Similarity=0.291 Sum_probs=56.5
Q ss_pred CCCCCEEEEEEECCCHHHHHHHHHHHHHCCC------CC---------HHHCCEEEE----ECCCHH-HHHHHHHHHHCC
Q ss_conf 9876505999955998999999999987078------88---------455779999----879548-999999974128
Q gi|254780754|r 1 MDRNIQKIHFKASNAKKAQEAYDKFVKIYGN------ST---------SEEADVIVV----LGGDGF-MLQSFHQSKEYD 60 (264)
Q Consensus 1 m~~~~~ki~i~~~~~~~a~~~~~~l~~~~~~------~~---------~~~~Dlii~----iGGDGT-~L~a~~~~~~~~ 60 (264)
|+..| |+-|+.++..-+.-....+.+.-+- .+ ...+|+|+. =+|||. +|+.++.. ..+
T Consensus 1 M~~~i-~VLIVEDd~~v~~~l~~~L~~~~gf~~V~~A~~~~eA~~~l~~~~pDLvLLDi~LPd~~Glell~~lr~~-~~~ 78 (225)
T PRK10046 1 MTAPL-TLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRGINLLHELVQA-HYP 78 (225)
T ss_pred CCCCC-EEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHH-CCC
T ss_conf 99988-6999959899999999999728995499998999999999973599999982898999799999999964-879
Q ss_pred CEEEEEC-------------CCCCCCCCCCCCHHHHHHHHHHCCC
Q ss_conf 7299415-------------3433201044587899986642012
Q gi|254780754|r 61 KPIYGMN-------------CGSVGFLMNEYCIENLVERLSVAVE 92 (264)
Q Consensus 61 ~PilGIn-------------~G~lGFL~~~~~~~~~~~~l~~~~~ 92 (264)
+||+=|- .|-..||.-+|..+.+.++|++...
T Consensus 79 ~~VI~iTA~~d~~~~~~Al~~Ga~DYLvKPf~~erl~~~L~~y~~ 123 (225)
T PRK10046 79 GDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQ 123 (225)
T ss_pred CCEEEEECCCCHHHHHHHHHCCCCCCEECCCCHHHHHHHHHHHHH
T ss_conf 988999689999999999974998310289999999999999999
No 223
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or para-aminobenzoate synthase; InterPro: IPR006221 This entry presents the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. ; GO: 0004049 anthranilate synthase activity, 0008152 metabolic process.
Probab=25.96 E-value=35 Score=14.95 Aligned_cols=26 Identities=23% Similarity=0.431 Sum_probs=20.4
Q ss_pred CC-HHHHHHHHHHHHC--CCEEEEECCCC
Q ss_conf 95-4899999997412--87299415343
Q gi|254780754|r 45 GD-GFMLQSFHQSKEY--DKPIYGMNCGS 70 (264)
Q Consensus 45 GD-GT~L~a~~~~~~~--~~PilGIn~G~ 70 (264)
=| |-++.+.+++..+ ++|||||=+|+
T Consensus 72 ~~~Gii~~~i~h~aGkldevPILGvCLG~ 100 (212)
T TIGR00566 72 ISMGIILEAIRHFAGKLDEVPILGVCLGH 100 (212)
T ss_pred CCHHHHHHHHHHHCCCCCCCCCCCCCHHH
T ss_conf 04117999987423762267602010556
No 224
>TIGR03566 FMN_reduc_MsuE FMN reductase, MsuE subfamily. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the NADH-dependent enzyme MsuE from Pseudomonas aeruginosa, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. The NADP-dependent enzyme from E. coli is outside the scope of this model.
Probab=25.78 E-value=34 Score=15.05 Aligned_cols=19 Identities=42% Similarity=0.511 Sum_probs=13.4
Q ss_pred ECCEEEEECCCCHHHHHHHCCCE
Q ss_conf 03507982266504467522981
Q gi|254780754|r 151 VCDGLVVSTPIGSTAYNFSALGP 173 (264)
Q Consensus 151 ~~DGvivSTptGSTAY~lSaGGp 173 (264)
.+||+||+||. |+-|--|.
T Consensus 68 ~AD~lIiaTP~----Y~gSysG~ 86 (174)
T TIGR03566 68 SADLLVVGSPV----YRGSYTGL 86 (174)
T ss_pred HCCEEEEECCC----CCCCCCHH
T ss_conf 67968997563----27777689
No 225
>PRK09367 histidine ammonia-lyase; Provisional
Probab=25.74 E-value=48 Score=14.06 Aligned_cols=26 Identities=35% Similarity=0.616 Sum_probs=15.8
Q ss_pred HHCCCEEEEECCCCCCCCCC-CCCHHHH
Q ss_conf 41287299415343320104-4587899
Q gi|254780754|r 57 KEYDKPIYGMNCGSVGFLMN-EYCIENL 83 (264)
Q Consensus 57 ~~~~~PilGIn~G~lGFL~~-~~~~~~~ 83 (264)
...+.||+|||+|= |-+++ .++.+++
T Consensus 47 ~~~g~~iYGvnTGf-G~~~~~~i~~~~~ 73 (504)
T PRK09367 47 VAEGRPVYGINTGF-GKLASVRIAPEDL 73 (504)
T ss_pred HHCCCEEEEECCCC-CCCCCEECCHHHH
T ss_conf 94599341005771-7875701688899
No 226
>TIGR01394 TypA_BipA GTP-binding protein TypA; InterPro: IPR006298 This bacterial (and Arabidopsis) protein, termed TypA or BipA, is a GTP-binding protein. It is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.; GO: 0005525 GTP binding, 0005622 intracellular.
Probab=25.74 E-value=41 Score=14.54 Aligned_cols=41 Identities=20% Similarity=0.267 Sum_probs=27.8
Q ss_pred EEEEECCEEEEECCCC-HHHHHHH---CCCEE-EEECCCEE--EEECCC
Q ss_conf 3121035079822665-0446752---29817-74088605--863035
Q gi|254780754|r 147 LPELVCDGLVVSTPIG-STAYNFS---ALGPI-LPLESRHL--LLTPVS 188 (264)
Q Consensus 147 ~~~~~~DGvivSTptG-STAY~lS---aGGpI-v~p~~~~~--~itpI~ 188 (264)
+++ |--|++||--.| +|||+|- .-|-. |.|+.++. +|..++
T Consensus 490 i~~-R~~GsLVs~~~G~a~~YaL~nLqeRG~~Fv~pG~~VY~GMIiGEh 537 (609)
T TIGR01394 490 IET-RRNGSLVSMEDGTATAYALWNLQERGRLFVSPGTEVYEGMIIGEH 537 (609)
T ss_pred CCC-CCCCEEEEECCCCHHHHHHHHHHHCCCEEECCCCCEECCEEEEEC
T ss_conf 777-514158992688106676873875384330788626334788723
No 227
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=25.72 E-value=48 Score=14.06 Aligned_cols=12 Identities=50% Similarity=0.996 Sum_probs=5.5
Q ss_pred HCCEEEEECCCH
Q ss_conf 577999987954
Q gi|254780754|r 36 EADVIVVLGGDG 47 (264)
Q Consensus 36 ~~Dlii~iGGDG 47 (264)
++|+||+.||=|
T Consensus 58 ~~DlIIttGG~s 69 (133)
T cd00758 58 EADLVLTTGGTG 69 (133)
T ss_pred CCCEEEECCCCC
T ss_conf 499999938866
No 228
>PRK05333 NAD-dependent deacetylase; Provisional
Probab=25.70 E-value=49 Score=14.05 Aligned_cols=11 Identities=36% Similarity=0.564 Sum_probs=5.4
Q ss_pred CCEEEEECCCH
Q ss_conf 77999987954
Q gi|254780754|r 37 ADVIVVLGGDG 47 (264)
Q Consensus 37 ~Dlii~iGGDG 47 (264)
..-|+++-|=|
T Consensus 19 s~~ivvlTGAG 29 (285)
T PRK05333 19 HPRLFVLTGAG 29 (285)
T ss_pred CCCEEEEECCE
T ss_conf 99789992973
No 229
>PRK00481 NAD-dependent deacetylase; Provisional
Probab=25.19 E-value=50 Score=13.99 Aligned_cols=13 Identities=62% Similarity=0.823 Sum_probs=7.6
Q ss_pred HCCEEEEECCCHH
Q ss_conf 5779999879548
Q gi|254780754|r 36 EADVIVVLGGDGF 48 (264)
Q Consensus 36 ~~Dlii~iGGDGT 48 (264)
++.-++++-|=|-
T Consensus 10 ~s~~ivvlTGAGi 22 (239)
T PRK00481 10 EAKRIVVLTGAGI 22 (239)
T ss_pred HCCCEEEEECCHH
T ss_conf 4997999979411
No 230
>cd01413 SIR2_Af2 SIR2_Af2: Archaeal and prokaryotic group which includes Archaeoglobus fulgidus Sir2-Af2, Sulfolobus solfataricus ssSir2, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The Sir2 homolog from the archaea Sulfolobus solftaricus deacetylates the non-specific DNA protein Alba to mediate transcription repression.
Probab=25.13 E-value=50 Score=13.99 Aligned_cols=16 Identities=13% Similarity=0.038 Sum_probs=6.0
Q ss_pred CCCCCCHHHHHHCCCC
Q ss_conf 0354330111100278
Q gi|254780754|r 186 PVSPFKPRRWHGAILP 201 (264)
Q Consensus 186 pI~p~~l~~~rplVl~ 201 (264)
|.||.--...||=|+-
T Consensus 137 P~C~~C~g~lrP~VV~ 152 (222)
T cd01413 137 PRCPKCGGIIRPDVVL 152 (222)
T ss_pred CCCCCCCCCCCCCEEE
T ss_conf 9774558833675777
No 231
>PRK03094 hypothetical protein; Provisional
Probab=24.64 E-value=39 Score=14.63 Aligned_cols=59 Identities=17% Similarity=0.159 Sum_probs=34.9
Q ss_pred CEEEEEEECCCHHHHHHHHHHHHHC---CCCCHHHCCEEEEECCCHHHHHHHHHHHHCCCEEEE
Q ss_conf 5059999559989999999999870---788845577999987954899999997412872994
Q gi|254780754|r 5 IQKIHFKASNAKKAQEAYDKFVKIY---GNSTSEEADVIVVLGGDGFMLQSFHQSKEYDKPIYG 65 (264)
Q Consensus 5 ~~ki~i~~~~~~~a~~~~~~l~~~~---~~~~~~~~Dlii~iGGDGT~L~a~~~~~~~~~PilG 65 (264)
|+||++-.+-++-.+.+.++--..- .+.+.+.+|.+|+-|.|--|+.-... ..+.||+-
T Consensus 1 m~kIaVE~~Ls~v~~~L~~~GY~Vv~l~~~~~a~~~Da~ViTG~d~N~mGiqd~--~t~~pVI~ 62 (80)
T PRK03094 1 MAKIGVENSLTDVQQALKQKGYEVVTLNSEQDAQGCDCCVVTGQDSNVMGIADT--STKGSVIT 62 (80)
T ss_pred CCCEEECCCCHHHHHHHHHCCCEEEECCCCCCCCCCCEEEEECCCCCCCCCCCC--CCCCCEEE
T ss_conf 981673267259999999779878966871433567889995897652264413--45687486
No 232
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=24.53 E-value=51 Score=13.92 Aligned_cols=23 Identities=26% Similarity=0.374 Sum_probs=12.5
Q ss_pred HHHHHHCCC-EEEEECCCCCCCCC
Q ss_conf 999741287-29941534332010
Q gi|254780754|r 53 FHQSKEYDK-PIYGMNCGSVGFLM 75 (264)
Q Consensus 53 ~~~~~~~~~-PilGIn~G~lGFL~ 75 (264)
...+..... -|+|||+|.|+=++
T Consensus 84 l~~f~~s~~plIvaINlG~L~NF~ 107 (504)
T TIGR03238 84 FDGFNQSNKPLIVGINMGMLHNFQ 107 (504)
T ss_pred HHHHHCCCCCEEEEEEHHHHHHHH
T ss_conf 998545699779998455443153
No 233
>TIGR02174 CXXU_selWTH selT/selW/selH selenoprotein domain; InterPro: IPR011893 This is a family found in both bacteria and animals, including the animal proteins SelT, SelW, and SelH, all of which are selenoproteins. These proteins contain a domain with a CXXC motif near the N-terminus, where selenocysteine may replace the second Cys. Proteins with this domain may include an insert of about 70 amino acids. ; GO: 0008430 selenium binding, 0045454 cell redox homeostasis.
Probab=24.33 E-value=51 Score=13.89 Aligned_cols=20 Identities=30% Similarity=0.463 Sum_probs=17.9
Q ss_pred EEEEEE---CC-EEEEEEEECCEE
Q ss_conf 898766---78-765312103507
Q gi|254780754|r 136 KLEVKV---DD-QVRLPELVCDGL 155 (264)
Q Consensus 136 ~~~v~i---d~-~~~~~~~~~DGv 155 (264)
.|||.+ || +..+++.+++|.
T Consensus 109 ~FEv~~~~pnGS~lvwSKl~~ggF 132 (144)
T TIGR02174 109 AFEVEVLRPNGSQLVWSKLEGGGF 132 (144)
T ss_pred CEEEEEEECCCCEEEEEEECCCCC
T ss_conf 169999828997754475148898
No 234
>PRK10513 sugar phosphatase; Provisional
Probab=24.28 E-value=38 Score=14.70 Aligned_cols=11 Identities=18% Similarity=0.407 Sum_probs=5.9
Q ss_pred HCCEEEEECCC
Q ss_conf 57799998795
Q gi|254780754|r 36 EADVIVVLGGD 46 (264)
Q Consensus 36 ~~Dlii~iGGD 46 (264)
..-++++-|-.
T Consensus 36 Gi~~~iaTGR~ 46 (270)
T PRK10513 36 GVNVVLTTGRP 46 (270)
T ss_pred CCEEEEECCCC
T ss_conf 99999997998
No 235
>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family; InterPro: IPR011896 A number of anaerobic and microaerophilic species lack pyruvate dehydrogenase and have instead a four subunit, oxygen-sensitive pyruvate oxidoreductase, with either ferredoxins or flavodoxins used as the acceptor. Several related four-subunit enzymes may exist in the same species. This entry describes the beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes..
Probab=24.13 E-value=31 Score=15.26 Aligned_cols=37 Identities=24% Similarity=0.557 Sum_probs=23.2
Q ss_pred CHHHCC-EEEEECCCHH--------HHHHHHHHHHC-----CCEEEEECCC
Q ss_conf 845577-9999879548--------99999997412-----8729941534
Q gi|254780754|r 33 TSEEAD-VIVVLGGDGF--------MLQSFHQSKEY-----DKPIYGMNCG 69 (264)
Q Consensus 33 ~~~~~D-lii~iGGDGT--------~L~a~~~~~~~-----~~PilGIn~G 69 (264)
+..+++ .||+-||||- |.++.|+..+. +=-|+|.-.|
T Consensus 66 KlANP~L~Viv~GGDGD~~GIG~~Hfva~gRRN~dIt~l~~DN~VYGLTKG 116 (302)
T TIGR02177 66 KLANPKLKVIVVGGDGDLYGIGGNHFVAAGRRNVDITVLVHDNQVYGLTKG 116 (302)
T ss_pred HHCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCEEEEECCEECCCCCC
T ss_conf 010898468986068641011057787541147882488424705466655
No 236
>pfam03575 Peptidase_S51 Peptidase family S51.
Probab=23.86 E-value=53 Score=13.84 Aligned_cols=37 Identities=32% Similarity=0.471 Sum_probs=19.1
Q ss_pred HHCCEEEEECCCHHHHHH----------HHHHHHCCCEEEEECCCCC
Q ss_conf 557799998795489999----------9997412872994153433
Q gi|254780754|r 35 EEADVIVVLGGDGFMLQS----------FHQSKEYDKPIYGMNCGSV 71 (264)
Q Consensus 35 ~~~Dlii~iGGDGT~L~a----------~~~~~~~~~PilGIn~G~l 71 (264)
.++|+|.+=||+=..|.. ++.+...++|+.|...|..
T Consensus 34 ~~ad~I~v~GGnt~~ll~~l~~~g~~~~l~~~~~~G~~~~G~SAGa~ 80 (154)
T pfam03575 34 LKADVIYVGGGNTFHLLKLLRETGLDDIIREAVQAGLPYIGWSAGAN 80 (154)
T ss_pred HHCCEEEECCCHHHHHHHHHHHCCCHHHHHHHHHCCCEEEEECHHHH
T ss_conf 85999998987599999999986829999999985977885060466
No 237
>cd03136 GATase1_AraC_ArgR_like AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to the Pseudomonas aeruginosa ArgR regulator. ArgR functions in the control of expression of certain genes of arginine biosynthesis and catabolism. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in some sequences in the sharp turn betwee
Probab=23.85 E-value=53 Score=13.83 Aligned_cols=37 Identities=22% Similarity=0.413 Sum_probs=21.5
Q ss_pred CHHHCCEEEEECCCHH-------HHHHHHHHHHCCCEEEEECCC
Q ss_conf 8455779999879548-------999999974128729941534
Q gi|254780754|r 33 TSEEADVIVVLGGDGF-------MLQSFHQSKEYDKPIYGMNCG 69 (264)
Q Consensus 33 ~~~~~Dlii~iGGDGT-------~L~a~~~~~~~~~PilGIn~G 69 (264)
+.+.+|.+|+.||.+. ++..+++.......+.++-+|
T Consensus 61 ~~~~~D~liV~Gg~~~~~~~~~~~~~~L~~~~~~g~~v~svctG 104 (185)
T cd03136 61 DAPPLDYLFVVGGLGARRAVTPALLAWLRRAARRGVALGGIDTG 104 (185)
T ss_pred HCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCEEEEECHH
T ss_conf 16767899987888802147999999999998709989986479
No 238
>COG0655 WrbA Multimeric flavodoxin WrbA [General function prediction only]
Probab=23.71 E-value=38 Score=14.74 Aligned_cols=11 Identities=27% Similarity=0.863 Sum_probs=9.4
Q ss_pred ECCEEEEECCC
Q ss_conf 03507982266
Q gi|254780754|r 151 VCDGLVVSTPI 161 (264)
Q Consensus 151 ~~DGvivSTpt 161 (264)
.+||+|++||+
T Consensus 75 ~aD~iI~gsPv 85 (207)
T COG0655 75 EADGIIFGSPV 85 (207)
T ss_pred HCCEEEEECCE
T ss_conf 78999998276
No 239
>PRK12564 carbamoyl phosphate synthase small subunit; Reviewed
Probab=23.66 E-value=53 Score=13.81 Aligned_cols=19 Identities=32% Similarity=0.305 Sum_probs=14.1
Q ss_pred EEEECCEEEEECCCCHHHH
Q ss_conf 1210350798226650446
Q gi|254780754|r 148 PELVCDGLVVSTPIGSTAY 166 (264)
Q Consensus 148 ~~~~~DGvivSTptGSTAY 166 (264)
..+.-|||.+|-.-|--+-
T Consensus 209 ~~~~pDGIflSNGPGDP~~ 227 (355)
T PRK12564 209 LALNPDGVFLSNGPGDPAA 227 (355)
T ss_pred HCCCCCEEEECCCCCCHHH
T ss_conf 4148888996799999688
No 240
>cd06336 PBP1_ABC_ligand_binding_like_3 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This group includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=23.51 E-value=53 Score=13.79 Aligned_cols=54 Identities=13% Similarity=0.127 Sum_probs=28.1
Q ss_pred EEEEEECCC----HHHHHHHHHHHHHCCCCCHHHCCEEEEECCCHHH-HHHHHHHHHCCCEEEEECC
Q ss_conf 599995599----8999999999987078884557799998795489-9999997412872994153
Q gi|254780754|r 7 KIHFKASNA----KKAQEAYDKFVKIYGNSTSEEADVIVVLGGDGFM-LQSFHQSKEYDKPIYGMNC 68 (264)
Q Consensus 7 ki~i~~~~~----~~a~~~~~~l~~~~~~~~~~~~Dlii~iGGDGT~-L~a~~~~~~~~~PilGIn~ 68 (264)
++.++.-|+ ..+....++|.. +-.+.+++|.-.+- +.++..+....+|++.-.+
T Consensus 44 ~ielv~~Dd~~~p~~a~~~a~~Li~--------~d~V~~v~G~~ss~~~aa~~~~~~~~~~~~~~~~ 102 (347)
T cd06336 44 KVEIVSYDDKYDPAEAAANARRLVQ--------QDGVKFILGPIGGGITAAQQITERNKVLLLTAYS 102 (347)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHH--------CCCEEEEECCCCHHHHHHHHHHHHCCCEEEECCC
T ss_conf 7999972599998999999999986--------1980899888862888878999964971540477
No 241
>pfam02887 PK_C Pyruvate kinase, alpha/beta domain. As well as being found in pyruvate kinase this family is found as an isolated domain in some bacterial proteins.
Probab=23.48 E-value=53 Score=13.79 Aligned_cols=32 Identities=31% Similarity=0.331 Sum_probs=14.2
Q ss_pred ECCEEEEECCCCHHHHHHHCCCEEEEECCCEEEEEC
Q ss_conf 035079822665044675229817740886058630
Q gi|254780754|r 151 VCDGLVVSTPIGSTAYNFSALGPILPLESRHLLLTP 186 (264)
Q Consensus 151 ~~DGvivSTptGSTAY~lSaGGpIv~p~~~~~~itp 186 (264)
.+..+++-|-+|.||-.+|.--| ..+.+.+||
T Consensus 16 ~akaIv~~T~sG~tA~~iS~~RP----~~pI~a~T~ 47 (117)
T pfam02887 16 GAKAIVVLTESGRTARLVSKYRP----GAPIIAVTP 47 (117)
T ss_pred CCCEEEEECCCCHHHHHHHHHCC----CCCEEEECC
T ss_conf 99999998898779999995499----986899659
No 242
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=23.41 E-value=54 Score=13.78 Aligned_cols=62 Identities=27% Similarity=0.340 Sum_probs=38.6
Q ss_pred EECCCHHHHHHHHHHHHHCCCC-------CH-------H-HCCEEE----EECCCHHHHHHHHHHHHCCCEE-EEECCCC
Q ss_conf 9559989999999999870788-------84-------5-577999----9879548999999974128729-9415343
Q gi|254780754|r 11 KASNAKKAQEAYDKFVKIYGNS-------TS-------E-EADVIV----VLGGDGFMLQSFHQSKEYDKPI-YGMNCGS 70 (264)
Q Consensus 11 ~~~~~~~a~~~~~~l~~~~~~~-------~~-------~-~~Dlii----~iGGDGT~L~a~~~~~~~~~Pi-lGIn~G~ 70 (264)
++-++.++.+...++.+..... +. + .+|-+= -||+|--+-..+..+...++|+ +|+|.|+
T Consensus 61 vavp~~~~a~al~~I~~~~~iPlvADIHF~~~lAl~a~~~g~~kiRINPGNig~~e~~~~vv~~ak~~~ipIRIGvN~GS 140 (367)
T PRK00366 61 VAVPDMEAAAALPEIKKQLPVPLVADIHFDYRLALKAAEAGADALRINPGNIGRDERFKEVVEAAKDYGIPIRIGVNAGS 140 (367)
T ss_pred ECCCCHHHHHHHHHHHHHCCCCEECCCCCCHHHHHHHHHHHHHHEEECCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCC
T ss_conf 84599999996999998478970312541489999999864111313787568648899999999984997664467787
Q ss_pred CC
Q ss_conf 32
Q gi|254780754|r 71 VG 72 (264)
Q Consensus 71 lG 72 (264)
|-
T Consensus 141 L~ 142 (367)
T PRK00366 141 LE 142 (367)
T ss_pred CC
T ss_conf 67
No 243
>cd01410 SIRT7 SIRT7: Eukaryotic and prokaryotic group (class4) which includes human sirtuin SIRT6, SIRT7, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=23.25 E-value=54 Score=13.76 Aligned_cols=11 Identities=18% Similarity=0.181 Sum_probs=4.1
Q ss_pred HHCCCEEEEEC
Q ss_conf 52298177408
Q gi|254780754|r 168 FSALGPILPLE 178 (264)
Q Consensus 168 lSaGGpIv~p~ 178 (264)
...|+|++--+
T Consensus 179 ~~~g~~vviiN 189 (206)
T cd01410 179 ARAGGRLVIVN 189 (206)
T ss_pred HHCCCCEEEEC
T ss_conf 97599099989
No 244
>pfam03698 UPF0180 Uncharacterized protein family (UPF0180). The members of this family are small uncharacterized proteins.
Probab=23.20 E-value=46 Score=14.21 Aligned_cols=59 Identities=19% Similarity=0.207 Sum_probs=34.1
Q ss_pred CEEEEEEECCCHHHHHHHHHHHHHC---CCCCHHHCCEEEEECCCHHHHHHHHHHHHCCCEEEE
Q ss_conf 5059999559989999999999870---788845577999987954899999997412872994
Q gi|254780754|r 5 IQKIHFKASNAKKAQEAYDKFVKIY---GNSTSEEADVIVVLGGDGFMLQSFHQSKEYDKPIYG 65 (264)
Q Consensus 5 ~~ki~i~~~~~~~a~~~~~~l~~~~---~~~~~~~~Dlii~iGGDGT~L~a~~~~~~~~~PilG 65 (264)
|+||++-.+-++-.+.+.++--..- .+.+.+++|.+|+-|.|--|+.-... ..+.||+-
T Consensus 1 m~kIaVE~~Ls~v~e~L~~~Gy~Vv~l~~~~~~~~~da~VitG~d~N~mGi~d~--~t~~pVI~ 62 (80)
T pfam03698 1 MKKIAVEQSLSNIEEALKEKGYEVVRLKNEQDAQGCDACVVTGLDSNMMGIEDT--VTKAPVID 62 (80)
T ss_pred CCCEEECCCCHHHHHHHHHCCCEEEECCCCCCCCCCCEEEEECCCCCCCCCCCC--CCCCCEEE
T ss_conf 982663267259999999779878867870325665889995898652144133--45687486
No 245
>cd06268 PBP1_ABC_transporter_LIVBP_like Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. They are mostly present in archaea and eubacteria, and are primarily involved in scavenging solutes from the environment. ABC-type transporters couple ATP hydrolysis with the uptake and efflux of a wide range of substrates across bacterial membranes, including amino acids, peptides, lipids and sterols, and various drugs. These systems are comprised of transmembrane domains, nucleotide binding domains, and in most bacterial uptake systems, periplasmic binding proteins (PBPs) which transfer the ligand to the extracellular gate of the transmembrane domains. These PBPs bind their substrates selectively and with high affinity. Members of this group include ABC
Probab=23.09 E-value=54 Score=13.74 Aligned_cols=57 Identities=18% Similarity=0.247 Sum_probs=31.3
Q ss_pred EEEEEEECCC----HHHHHHHHHHHHHCCCCCHHHCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf 0599995599----899999999998707888455779999879548999999974128729941534
Q gi|254780754|r 6 QKIHFKASNA----KKAQEAYDKFVKIYGNSTSEEADVIVVLGGDGFMLQSFHQSKEYDKPIYGMNCG 69 (264)
Q Consensus 6 ~ki~i~~~~~----~~a~~~~~~l~~~~~~~~~~~~Dlii~iGGDGT~L~a~~~~~~~~~PilGIn~G 69 (264)
.++.++.-+. ..+....+++.+ +++++++--.+-++.+.++..+...++|+++...+
T Consensus 39 ~~i~l~~~D~~~~~~~~~~~~~~l~~-------~~v~~iiG~~~s~~~~~~~~~~~~~~ip~i~~~~~ 99 (298)
T cd06268 39 RKIELVVEDTQGDPEAAAAAARELVD-------DGVDAVIGPLSSGVALAAAPVAEEAGVPLISPGAT 99 (298)
T ss_pred EEEEEEEECCCCCHHHHHHHHHHHHC-------CCCEEEECCCCHHHHHHHHHHHHHCCCEEEECCCC
T ss_conf 68899996799998999999998632-------79739974775788899999998719218805754
No 246
>pfam00318 Ribosomal_S2 Ribosomal protein S2.
Probab=23.02 E-value=55 Score=13.73 Aligned_cols=37 Identities=16% Similarity=0.146 Sum_probs=14.9
Q ss_pred CEEEEECCCHHHHHHHHHHH-HCCCEEEEECCCCC-CCCCC
Q ss_conf 79999879548999999974-12872994153433-20104
Q gi|254780754|r 38 DVIVVLGGDGFMLQSFHQSK-EYDKPIYGMNCGSV-GFLMN 76 (264)
Q Consensus 38 Dlii~iGGDGT~L~a~~~~~-~~~~PilGIn~G~l-GFL~~ 76 (264)
--++.+|.---.=..++.+. ..+.|. ||.--+ |.|||
T Consensus 57 ~~iLfVgTk~~~~~~v~~~a~~~~~~y--v~~rWigG~LTN 95 (205)
T pfam00318 57 GKILFVGTKKQAQEAVKKFAKRTGQFY--VNGRWLGGTLTN 95 (205)
T ss_pred CEEEEEECCHHHHHHHHHHHHHHCCCC--CCCCCCCCCCCC
T ss_conf 828999777899999999999839974--316433872366
No 247
>cd01411 SIR2H SIR2H: Uncharacterized prokaryotic Sir2 homologs from several gram positive bacterial species and Fusobacteria; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=22.96 E-value=55 Score=13.73 Aligned_cols=16 Identities=13% Similarity=-0.074 Sum_probs=6.1
Q ss_pred CCCCCCHHHHHHCCCC
Q ss_conf 0354330111100278
Q gi|254780754|r 186 PVSPFKPRRWHGAILP 201 (264)
Q Consensus 186 pI~p~~l~~~rplVl~ 201 (264)
|.||.--...||-|+-
T Consensus 137 p~C~~Cgg~lrP~VV~ 152 (225)
T cd01411 137 PYHAKCGGVIRPDIVL 152 (225)
T ss_pred CCCCCCCCEECCCEEE
T ss_conf 8876679982783888
No 248
>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional
Probab=22.92 E-value=55 Score=13.72 Aligned_cols=52 Identities=17% Similarity=0.187 Sum_probs=19.1
Q ss_pred CCEEEEECCCHHHHHHHHHHHHC--CCEEE-EECCCCC-CCCCCCCCHHHHHHHHHHC
Q ss_conf 77999987954899999997412--87299-4153433-2010445878999866420
Q gi|254780754|r 37 ADVIVVLGGDGFMLQSFHQSKEY--DKPIY-GMNCGSV-GFLMNEYCIENLVERLSVA 90 (264)
Q Consensus 37 ~Dlii~iGGDGT~L~a~~~~~~~--~~Pil-GIn~G~l-GFL~~~~~~~~~~~~l~~~ 90 (264)
.|+.--+.--.-++..++..... ++|++ .+.+-.= |.. +.+.++..+.+..+
T Consensus 49 lD~l~~~~~~~~~~~~~~~i~~~~~~~PlI~T~R~~~EGG~~--~~~e~~~~~il~~~ 104 (253)
T PRK02412 49 ADFLEKVSDVEEVLAAAPAIREKFPGKPLLFTFRTAKEGGEI--ELSDEEYLALYKAV 104 (253)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHCCCC--CCCHHHHHHHHHHH
T ss_conf 031345699999999999999846899789992474438986--69999999999999
No 249
>cd01562 Thr-dehyd Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen. Although the nitrogen atoms of most amino acids are transferred to alpha-ketoglutarate before removal, the alpha-amino group of threonine can be directly converted into NH4+. The direct deamination is catalyzed by threonine dehydratase, in which pyridoxal phosphate (PLP) is the prosthetic group. Threonine dehydratase is widely distributed in all three major phylogenetic divisions.
Probab=22.66 E-value=37 Score=14.82 Aligned_cols=36 Identities=14% Similarity=0.134 Sum_probs=24.7
Q ss_pred CCEEEEECCCCHHHHHHHCCCEEEEECCCEEEEECC
Q ss_conf 350798226650446752298177408860586303
Q gi|254780754|r 152 CDGLVVSTPIGSTAYNFSALGPILPLESRHLLLTPV 187 (264)
Q Consensus 152 ~DGvivSTptGSTAY~lSaGGpIv~p~~~~~~itpI 187 (264)
-|-+++++.+|.|....+.+=--..|+.+.+.+-|-
T Consensus 166 ~D~vv~~vG~Gg~~~Gi~~~lk~~~p~~kii~Vep~ 201 (304)
T cd01562 166 LDAVFVPVGGGGLIAGIATAVKALSPNTKVIGVEPE 201 (304)
T ss_pred CCEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEC
T ss_conf 987997258616899999999972999989999408
No 250
>cd03132 GATase1_catalase Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Catalase catalyzes the dismutation of hydrogen peroxide (H2O2) to water and oxygen. This group includes the large catalases: Neurospora crassa Catalase-1 and Catalase-3 and, Escherichia coli HP-II. This GATase1-like domain has an essential role in HP-II catalase activity. However, it lacks enzymatic activity and the catalytic triad typical of GATase1 domains. Catalase-1 and -3 are homotetrameric, HP-II is homohexameric. It has been proposed that this domain may facilitate the folding and oligomerization process. The interface between this GATase1-like domain of HP-II and the core of the subunit forms part of a channel which provides access to the deeply buried catalase active sites of HPII. Catalase-1 is associated with non-growing cells; C
Probab=22.29 E-value=56 Score=13.64 Aligned_cols=37 Identities=32% Similarity=0.378 Sum_probs=25.6
Q ss_pred CHHHCCEEEEECC---------CHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf 8455779999879---------548999999974128729941534
Q gi|254780754|r 33 TSEEADVIVVLGG---------DGFMLQSFHQSKEYDKPIYGMNCG 69 (264)
Q Consensus 33 ~~~~~Dlii~iGG---------DGT~L~a~~~~~~~~~PilGIn~G 69 (264)
....+|-+++.|| ||..++.++.+..+.+||-.+..|
T Consensus 59 ~s~~fDAvvipgG~~~~~~L~~~~~~~~fv~eay~h~KpI~a~~~~ 104 (142)
T cd03132 59 PSVLFDAVVVPGGAEAAFALAPSGRALHFVTEAFKHGKPIGAVGEG 104 (142)
T ss_pred CHHHCCEEEECCCCCCHHHHCCCHHHHHHHHHHHHCCCEEEEECCH
T ss_conf 9647136884388779888644867999999999769979993772
No 251
>PRK00002 aroB 3-dehydroquinate synthase; Reviewed
Probab=22.24 E-value=56 Score=13.64 Aligned_cols=49 Identities=12% Similarity=0.156 Sum_probs=24.5
Q ss_pred HHHHHHHHHHCCCCCHHHCCEEEEECCCHHHHHHHHH---HHHCCCEEEEECC
Q ss_conf 9999999987078884557799998795489999999---7412872994153
Q gi|254780754|r 19 QEAYDKFVKIYGNSTSEEADVIVVLGGDGFMLQSFHQ---SKEYDKPIYGMNC 68 (264)
Q Consensus 19 ~~~~~~l~~~~~~~~~~~~Dlii~iGGDGT~L~a~~~---~~~~~~PilGIn~ 68 (264)
.+....+...+.+.....-|++|++|| |.+...+-. ...+++|++-|-+
T Consensus 76 l~~~~~i~~~l~~~~~~R~~~iiaiGG-Gvv~DlaGF~As~y~RGi~~i~iPT 127 (360)
T PRK00002 76 LETLERIYDALLEAGLDRSDTLIALGG-GVVGDLAGFAAATYMRGIRFIQVPT 127 (360)
T ss_pred HHHHHHHHHHHHHCCCCCCCCEEEECC-HHHHHHHHHHHHHHHCCCCEEECCC
T ss_conf 989999999999769998873153066-3765889999999847997797460
No 252
>PRK09181 aspartate kinase; Validated
Probab=22.23 E-value=57 Score=13.63 Aligned_cols=40 Identities=18% Similarity=0.221 Sum_probs=20.0
Q ss_pred EEEEEECCEEEEEEEECCEEEE--E--CCCCHHHHH----HH-CCCEEEEECC
Q ss_conf 8987667876531210350798--2--266504467----52-2981774088
Q gi|254780754|r 136 KLEVKVDDQVRLPELVCDGLVV--S--TPIGSTAYN----FS-ALGPILPLES 179 (264)
Q Consensus 136 ~~~v~id~~~~~~~~~~DGviv--S--TptGSTAY~----lS-aGGpIv~p~~ 179 (264)
++.+|-|-. -|.+|-=+| + -|.....|. || .|..++||..
T Consensus 236 ~~~i~~dv~----v~taDP~~v~~~~~~~i~~~sy~ea~ela~~Ga~vlhp~~ 284 (476)
T PRK09181 236 EAIIHKEYH----LSSADPKLVGEDKVVPIGRTNYDVADQLANLGMEAIHPKA 284 (476)
T ss_pred EEEEEEECC----EECCCCCCCCCCCCEECCCCCHHHHHHHHHCCCCCCCCHH
T ss_conf 999996365----3127988436543447352689999999865986408067
No 253
>cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase). Methanococcus jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits which, catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. Ppyr decarboxylase is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. Ppyr decarboxylase and ComDE require TPP and divalent metal cation cofactors.
Probab=22.02 E-value=51 Score=13.93 Aligned_cols=16 Identities=31% Similarity=0.675 Sum_probs=8.7
Q ss_pred CCEEEEECCCHHHHHH
Q ss_conf 7799998795489999
Q gi|254780754|r 37 ADVIVVLGGDGFMLQS 52 (264)
Q Consensus 37 ~Dlii~iGGDGT~L~a 52 (264)
++=||+|-|||.+|-.
T Consensus 59 p~kVi~idGDGs~lM~ 74 (157)
T cd02001 59 SRKVIVVDGDGSLLMN 74 (157)
T ss_pred CCCEEEEECCHHHHHC
T ss_conf 9968999575588752
No 254
>COG2272 PnbA Carboxylesterase type B [Lipid metabolism]
Probab=22.01 E-value=45 Score=14.25 Aligned_cols=39 Identities=23% Similarity=0.365 Sum_probs=22.4
Q ss_pred CCEEEEECC-----CHHH--HHHHHHHHHCCCEEEEEC--CCCCCCCC
Q ss_conf 779999879-----5489--999999741287299415--34332010
Q gi|254780754|r 37 ADVIVVLGG-----DGFM--LQSFHQSKEYDKPIYGMN--CGSVGFLM 75 (264)
Q Consensus 37 ~Dlii~iGG-----DGT~--L~a~~~~~~~~~PilGIn--~G~lGFL~ 75 (264)
+=+|-..|| .|+- ..-...+..-++-++.+| +|-+|||.
T Consensus 95 PVmV~IHGG~y~~Gs~s~~~ydgs~La~~g~vVvVSvNYRLG~lGfL~ 142 (491)
T COG2272 95 PVMVYIHGGGYIMGSGSEPLYDGSALAARGDVVVVSVNYRLGALGFLD 142 (491)
T ss_pred CEEEEEECCCCCCCCCCCCCCCHHHHHHCCCEEEEEECCCCCCCEEEE
T ss_conf 579999466103687766445868897549879998576245500120
No 255
>COG2986 HutH Histidine ammonia-lyase [Amino acid transport and metabolism]
Probab=21.89 E-value=57 Score=13.59 Aligned_cols=26 Identities=31% Similarity=0.553 Sum_probs=16.4
Q ss_pred HHCCCEEEEECCCCCCCCCC-CCCHHHH
Q ss_conf 41287299415343320104-4587899
Q gi|254780754|r 57 KEYDKPIYGMNCGSVGFLMN-EYCIENL 83 (264)
Q Consensus 57 ~~~~~PilGIn~G~lGFL~~-~~~~~~~ 83 (264)
...+.|++|||+|= |-|++ .+..++.
T Consensus 47 v~~g~~vYGInTGf-G~l~~v~I~~~d~ 73 (498)
T COG2986 47 VAGGAPVYGINTGF-GKLADVRIAAADL 73 (498)
T ss_pred HHCCCEEEEECCCC-CCCCCCCCCHHHH
T ss_conf 84798456432564-4321540189999
No 256
>TIGR02460 osmo_MPGsynth mannosyl-3-phosphoglycerate synthase; InterPro: IPR012812 This family consists of examples of mannosyl-3-phosphoglycerate synthase (MPGS), which together with mannosyl-3-phosphoglycerate phosphatase (MPGP), comprises a two-step pathway for mannosylglycerate biosynthesis. Mannosylglycerate is a compatible solute that tends to be restricted to extreme thermophiles of archaea and bacteria. Note that in Rhodothermus marinus, this pathway is one of two; the other is condensation of GDP-mannose with D-glycerate by mannosylglycerate synthase.; GO: 0050504 mannosyl-3-phosphoglycerate synthase activity, 0051479 mannosylglycerate biosynthetic process, 0005737 cytoplasm.
Probab=21.86 E-value=31 Score=15.31 Aligned_cols=113 Identities=16% Similarity=0.199 Sum_probs=55.5
Q ss_pred CCCCC-CCCCCHH---HHHHHHHHCCCCCCCEEEEEEEECCCCCCCEEEEEEEEEEEEECCCCCCEEEE-EEEEEEECCE
Q ss_conf 33201-0445878---99986642012432034434542124444201577534799726876423678-8898766787
Q gi|254780754|r 70 SVGFL-MNEYCIE---NLVERLSVAVECTFHPLKMTVFDYDNSICAENILAINEVSIIRKPGQNQLVQA-AKLEVKVDDQ 144 (264)
Q Consensus 70 ~lGFL-~~~~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~AlNEi~i~r~~~~~~~~~~-~~~~v~id~~ 144 (264)
-+||- +|.|-|. +.......++-..-++-.|-.+.|..+.+ ++=||-+.+|..+ +-+... -.|+..|...
T Consensus 168 YvGFvDsDNY~PGAv~EYv~~YaAgf~mA~s~YsmvRi~Wr~KPK----l~~~e~l~f~k~G-RvSe~~N~~LN~l~S~~ 242 (394)
T TIGR02460 168 YVGFVDSDNYFPGAVNEYVKIYAAGFLMATSPYSMVRIVWRYKPK----LTEDEDLYFRKWG-RVSEITNKYLNLLISEV 242 (394)
T ss_pred EEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEECCCCCE----EECCCCEEECCCC-CCCCCHHHHHHHHHHHC
T ss_conf 003674067877425688999998642026864313765278873----6358714633311-00240257899887510
Q ss_pred EEEEEEECCEEEEECCCC--------------HHHHHH----------------HCCC--EEEEECCCEEEEECCCCCC
Q ss_conf 653121035079822665--------------044675----------------2298--1774088605863035433
Q gi|254780754|r 145 VRLPELVCDGLVVSTPIG--------------STAYNF----------------SALG--PILPLESRHLLLTPVSPFK 191 (264)
Q Consensus 145 ~~~~~~~~DGvivSTptG--------------STAY~l----------------SaGG--pIv~p~~~~~~itpI~p~~ 191 (264)
+.|. .-+|..-=+| ||||+. -++- +|++.+.+.+||-|.|||=
T Consensus 243 ---~~fE-t~ii~TGNAGEhAlt~~LA~~Ln~sSGYavEpyelv~~LE~fG~~~~~~~f~~v~~~GiEifQiet~NPH~ 317 (394)
T TIGR02460 243 ---TGFE-TDIIKTGNAGEHALTMKLAEELNYSSGYAVEPYELVYILEKFGGLLPVEEFKDVLEKGIEIFQIETLNPHF 317 (394)
T ss_pred ---CEEE-EEEEECCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHCCEEEEEECCCCCCC
T ss_conf ---2010-00133067156889899984277757761006899999987246466656523551772899737897864
No 257
>pfam06057 VirJ Bacterial virulence protein (VirJ). This family consists of several bacterial VirJ virulence proteins. VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localized to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium.
Probab=21.79 E-value=58 Score=13.58 Aligned_cols=66 Identities=17% Similarity=0.315 Sum_probs=39.8
Q ss_pred EEEEECCCHHHHH----HHHHHHHCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCC---CCEEEEEEEECC
Q ss_conf 9999879548999----9999741287299415343320104458789998664201243---203443454212
Q gi|254780754|r 39 VIVVLGGDGFMLQ----SFHQSKEYDKPIYGMNCGSVGFLMNEYCIENLVERLSVAVECT---FHPLKMTVFDYD 106 (264)
Q Consensus 39 lii~iGGDGT~L~----a~~~~~~~~~PilGIn~G~lGFL~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~ 106 (264)
++|.+-|||-.-. .+..++..++||+|+++ |-|+-++-.+++.-..|.++...- ....+..++-|+
T Consensus 4 lav~~SGDGGW~~lD~~va~~L~~~GvpVvGvdS--LrYFW~~ktP~q~a~Dl~~ii~~Y~~~w~~~~v~LiGYS 76 (192)
T pfam06057 4 VAVFYSGDGGWRDLDKEVGSALQKQGVPVVGVDS--LRYFWSERTPEEVADDLDRIIDTYRKRWKVKNVVLIGYS 76 (192)
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHCCCCEEEECH--HHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEEC
T ss_conf 9999946887355519999999977983655326--888756599899999999999999998589659999617
No 258
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=21.69 E-value=58 Score=13.57 Aligned_cols=10 Identities=10% Similarity=0.298 Sum_probs=5.5
Q ss_pred EEEEEEECCC
Q ss_conf 0599995599
Q gi|254780754|r 6 QKIHFKASNA 15 (264)
Q Consensus 6 ~ki~i~~~~~ 15 (264)
|||.|+....
T Consensus 1 MkI~fi~p~l 10 (392)
T cd03805 1 LRVAFIHPDL 10 (392)
T ss_pred CEEEEECCCC
T ss_conf 9899986999
No 259
>TIGR02691 arsC_pI258_fam arsenate reductase (thioredoxin); InterPro: IPR014064 This family describes the well-studied thioredoxin-dependent arsenate reductase of Staphylococcus aureus plasmid pI258 and other mechanistically similar arsenate reductases. The mechanism involves an intramolecular disulphide bond cascade, and aligned members of this family have four absolutely conserved Cys residues. This group of arsenate reductases belongs to the low-molecular weight protein-tyrosine phosphatase family (IPR000106 from INTERPRO), as does a group of glutathione/glutaredoxin type arsenate reductases (IPR014062 from INTERPRO). At least two other, non-homologous groups of arsenate reductases involved in arsenical resistance are also known. This enzyme reduces arsenate to arsenite, which may be more toxic but which is more easily exported..
Probab=21.55 E-value=27 Score=15.65 Aligned_cols=43 Identities=21% Similarity=0.311 Sum_probs=27.7
Q ss_pred HHHHHHHHCCCCCHHHCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCC--CC
Q ss_conf 999999870788845577999987954899999997412872994153433--20
Q gi|254780754|r 21 AYDKFVKIYGNSTSEEADVIVVLGGDGFMLQSFHQSKEYDKPIYGMNCGSV--GF 73 (264)
Q Consensus 21 ~~~~l~~~~~~~~~~~~Dlii~iGGDGT~L~a~~~~~~~~~PilGIn~G~l--GF 73 (264)
+.++-++..+....+.+||||++=||- . -..|++.=+.-++ ||
T Consensus 54 IS~q~S~lID~~~L~~adlVvTLCGdA---------~-D~CP~~P~~v~~~HW~l 98 (129)
T TIGR02691 54 ISNQTSDLIDLDILNKADLVVTLCGDA---------R-DKCPALPPNVKRLHWGL 98 (129)
T ss_pred CCCCCCHHHHHHHHHCCCEEEECCCCC---------C-CCCCCCCCCCCCCCCCC
T ss_conf 334420244577762178787623565---------6-68888984444236799
No 260
>cd00156 REC Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; contains a phosphoacceptor site that is phosphorylated by histidine kinase homologs; usually found N-terminal to a DNA binding effector domain; forms homodimers
Probab=21.48 E-value=59 Score=13.54 Aligned_cols=54 Identities=26% Similarity=0.469 Sum_probs=33.3
Q ss_pred HCCEEEE----ECCCH-HHHHHHHHHHHCCCEEEEECC-------------CCCCCCCCCCCHHHHHHHHHHC
Q ss_conf 5779999----87954-899999997412872994153-------------4332010445878999866420
Q gi|254780754|r 36 EADVIVV----LGGDG-FMLQSFHQSKEYDKPIYGMNC-------------GSVGFLMNEYCIENLVERLSVA 90 (264)
Q Consensus 36 ~~Dlii~----iGGDG-T~L~a~~~~~~~~~PilGIn~-------------G~lGFL~~~~~~~~~~~~l~~~ 90 (264)
.+|+++. =|.|| .+++..|.. ..++||+-+.. |-.|||.-++..+++.+.+.+.
T Consensus 41 ~~dlvi~D~~mP~~~G~el~~~ir~~-~~~~pvI~lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~v~~~ 112 (113)
T cd00156 41 KPDLILLDIMMPGMDGLELLRRIRKR-GPDIPIIFLTAHGDDEDAVEALKAGADDYLTKPFSPEELLARIRAL 112 (113)
T ss_pred CCCEEEECCCCCCCCCHHHHHHHHHH-CCCCCEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHH
T ss_conf 99999977999898726999999985-8999599997878999999999768978996989999999999986
No 261
>PRK10430 DNA-binding transcriptional activator DcuR; Provisional
Probab=21.46 E-value=59 Score=13.54 Aligned_cols=85 Identities=18% Similarity=0.319 Sum_probs=54.4
Q ss_pred CEEEEEEECCCHHHHHHHHHHHHHC-CC------C-----------CHHHCCEEEE----ECCCHH-HHHHHHHHHHCCC
Q ss_conf 5059999559989999999999870-78------8-----------8455779999----879548-9999999741287
Q gi|254780754|r 5 IQKIHFKASNAKKAQEAYDKFVKIY-GN------S-----------TSEEADVIVV----LGGDGF-MLQSFHQSKEYDK 61 (264)
Q Consensus 5 ~~ki~i~~~~~~~a~~~~~~l~~~~-~~------~-----------~~~~~Dlii~----iGGDGT-~L~a~~~~~~~~~ 61 (264)
|.|+.|+.++..-++ +.+.+.+.. +- . ....+|+|+. =+|||- +|+.+|.. ..++
T Consensus 1 MirVLIVEDD~~v~~-~~~~~l~~~~gf~vv~~a~t~~eA~~~l~~~~~~~DLILLDi~mPd~~Glell~~lR~~-~~~~ 78 (239)
T PRK10430 1 MINVLIVDDDAMVAE-LNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQQENGLDLLPVLHEA-GCKS 78 (239)
T ss_pred CCEEEEEECCHHHHH-HHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHH-CCCC
T ss_conf 987999929899999-99999851899089999899999999996579998589978999999789999999985-8998
Q ss_pred EEEEEC-------------CCCCCCCCCCCCHHHHHHHHHHCC
Q ss_conf 299415-------------343320104458789998664201
Q gi|254780754|r 62 PIYGMN-------------CGSVGFLMNEYCIENLVERLSVAV 91 (264)
Q Consensus 62 PilGIn-------------~G~lGFL~~~~~~~~~~~~l~~~~ 91 (264)
||+=|. .|-.+||.-+|..+.+.++|++..
T Consensus 79 ~VI~ITa~~d~~~v~~Al~~Ga~DYLiKPf~~~rl~~~L~~y~ 121 (239)
T PRK10430 79 DVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 (239)
T ss_pred EEEEEEECCCHHHHHHHHHCCCHHHEECCCCHHHHHHHHHHHH
T ss_conf 1999972688999999998395030489999999999999999
No 262
>PRK06714 S-adenosylhomocysteine nucleosidase; Validated
Probab=21.41 E-value=59 Score=13.53 Aligned_cols=71 Identities=15% Similarity=0.076 Sum_probs=46.7
Q ss_pred CEEEEEEECCCHHHHHHHHHHHHHCCC---------CCHHHCCEEEEECCCHHHHHHHHHHH--HCCCEEEEECCCCCCC
Q ss_conf 505999955998999999999987078---------88455779999879548999999974--1287299415343320
Q gi|254780754|r 5 IQKIHFKASNAKKAQEAYDKFVKIYGN---------STSEEADVIVVLGGDGFMLQSFHQSK--EYDKPIYGMNCGSVGF 73 (264)
Q Consensus 5 ~~ki~i~~~~~~~a~~~~~~l~~~~~~---------~~~~~~Dlii~iGGDGT~L~a~~~~~--~~~~PilGIn~G~lGF 73 (264)
|+||+|+..=.+|-..+.+.+...-.. -..++-+++++..|=|-.--|+--.. +.-.|=+=||+|.=|=
T Consensus 1 M~kIgIIgAM~~Ev~~l~~~~~~~~~~~~~~~~fy~G~l~g~~VVl~~sGIGKVnAA~~t~~LI~~F~~d~IIntGvAGg 80 (236)
T PRK06714 1 MKRIAIVAAWEPELTYLHQSYPSERVEKRAAWEFHFHTINDLEIISVITGVGKVSCASCVQLLISEFQPDELFMTGICGS 80 (236)
T ss_pred CCEEEEEECCHHHHHHHHHHHCCCEEEEECCEEEEEEEECCEEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEECCCCCC
T ss_conf 96699995289999999997300718999888999999999999999678229999999999998449999998786323
Q ss_pred CC
Q ss_conf 10
Q gi|254780754|r 74 LM 75 (264)
Q Consensus 74 L~ 75 (264)
|-
T Consensus 81 l~ 82 (236)
T PRK06714 81 LS 82 (236)
T ss_pred CC
T ss_conf 58
No 263
>KOG0647 consensus
Probab=21.36 E-value=30 Score=15.33 Aligned_cols=18 Identities=28% Similarity=0.265 Sum_probs=9.3
Q ss_pred HCCCEEEEEC---CCCCCCCC
Q ss_conf 1287299415---34332010
Q gi|254780754|r 58 EYDKPIYGMN---CGSVGFLM 75 (264)
Q Consensus 58 ~~~~PilGIn---~G~lGFL~ 75 (264)
..+.|+|-+. -|+.=|..
T Consensus 70 ~~~~PvL~v~WsddgskVf~g 90 (347)
T KOG0647 70 SHDGPVLDVCWSDDGSKVFSG 90 (347)
T ss_pred CCCCCEEEEEECCCCCEEEEE
T ss_conf 169982788881688549862
No 264
>TIGR00073 hypB hydrogenase accessory protein HypB; InterPro: IPR004392 The hydrogenase accessory protein HypB is a GTP hydrolase for assembly of nickel metallocentre of hydrogenase. A similar protein, ureG, is an accessory protein for urease, which also uses nickel.; GO: 0016151 nickel ion binding, 0006461 protein complex assembly.
Probab=21.29 E-value=59 Score=13.51 Aligned_cols=36 Identities=19% Similarity=0.246 Sum_probs=26.3
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCCC
Q ss_conf 7999987954899999997412872994153433201
Q gi|254780754|r 38 DVIVVLGGDGFMLQSFHQSKEYDKPIYGMNCGSVGFL 74 (264)
Q Consensus 38 Dlii~iGGDGT~L~a~~~~~~~~~PilGIn~G~lGFL 74 (264)
=+.++.|-==|-.-|.| +...+.|+.+||||+-..|
T Consensus 63 K~Avi~GD~~t~~DA~R-lR~~G~~a~~~nTGk~CHL 98 (225)
T TIGR00073 63 KIAVIEGDVQTKNDADR-LRKYGVPAIQINTGKECHL 98 (225)
T ss_pred CEEEEECCHHHHHHHHH-HHHCCCEEEEECCCCCCCC
T ss_conf 78999755322556999-9864986886368864440
No 265
>TIGR03669 urea_ABC_arch urea ABC transporter, substrate-binding protein, archaeal type. Members of this protein family are identified as the substrate-binding protein of a urea ABC transport system by similarity to a known urea transporter from Corynebacterium glutamicum, operon structure, proximity of its operons to urease (urea-utilization protein) operons, and by Partial Phylogenetic Profiling vs. urea utilization.
Probab=21.18 E-value=59 Score=13.50 Aligned_cols=52 Identities=10% Similarity=0.068 Sum_probs=23.0
Q ss_pred EEEEEECCC----HHHHHHHHHHHHHCCCCCHHHCCEEEEECCCHH--HHHHHHHHHHCCCEEEEE
Q ss_conf 599995599----899999999998707888455779999879548--999999974128729941
Q gi|254780754|r 7 KIHFKASNA----KKAQEAYDKFVKIYGNSTSEEADVIVVLGGDGF--MLQSFHQSKEYDKPIYGM 66 (264)
Q Consensus 7 ki~i~~~~~----~~a~~~~~~l~~~~~~~~~~~~Dlii~iGGDGT--~L~a~~~~~~~~~PilGI 66 (264)
++-++.-|. ..+....++|.. +-.+.+++|+-.+ -+-....+...++|.+.-
T Consensus 41 ~ielv~~D~~~~p~~a~~~a~kLi~--------~d~V~~v~G~~~S~~~~Av~p~~~~~~~~~~~~ 98 (374)
T TIGR03669 41 QIELIDPDPQSDNERYQELTRRLLN--------RDKVDALWAGYSSATREAIRPIIDRNEQLYFYT 98 (374)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHH--------HCCCEEEECCCCCHHHHHHHHHHHHCCCEEEEE
T ss_conf 8799973799998999999999996--------489449984667177788788998608516981
No 266
>TIGR01523 ATPase-IID_K-Na potassium/sodium efflux P-type ATPase, fungal-type; InterPro: IPR006414 Initially described as a calcium efflux ATPase , more recent work has shown that the Schizosaccharomyces pombe CTA3 gene is in fact a potassium ion efflux pump . These sequences form the clade which represents the fungal P-type ATPases which are responsible for potassium and sodium efflux. The degree to which these pumps show preference for sodium or potassium varies. This group of ATPases has been classified by phylogentic analysis as type IID . ; GO: 0015662 ATPase activity coupled to transmembrane movement of ions phosphorylative mechanism, 0006812 cation transport, 0016021 integral to membrane.
Probab=21.03 E-value=47 Score=14.16 Aligned_cols=20 Identities=25% Similarity=0.225 Sum_probs=7.5
Q ss_pred ECCEEEEECCCC---HHHHHHHC
Q ss_conf 035079822665---04467522
Q gi|254780754|r 151 VCDGLVVSTPIG---STAYNFSA 170 (264)
Q Consensus 151 ~~DGvivSTptG---STAY~lSa 170 (264)
.--|+-|--=|| -||-+.+-
T Consensus 607 H~AGI~VHMLTGD~~~TAKAIA~ 629 (1001)
T TIGR01523 607 HRAGIRVHMLTGDFVETAKAIAR 629 (1001)
T ss_pred HHCCCEEEEECCCCHHHHHHHHH
T ss_conf 54796688743896578899874
No 267
>PRK11083 DNA-binding response regulator CreB; Provisional
Probab=20.84 E-value=60 Score=13.45 Aligned_cols=88 Identities=9% Similarity=0.198 Sum_probs=54.6
Q ss_pred CCEEEEEEECCCHHHHHHHHHHHHH-CCC---C---------CHHHCCEEEE----ECCCHH-HHHHHHHHHHCCCEEEE
Q ss_conf 6505999955998999999999987-078---8---------8455779999----879548-99999997412872994
Q gi|254780754|r 4 NIQKIHFKASNAKKAQEAYDKFVKI-YGN---S---------TSEEADVIVV----LGGDGF-MLQSFHQSKEYDKPIYG 65 (264)
Q Consensus 4 ~~~ki~i~~~~~~~a~~~~~~l~~~-~~~---~---------~~~~~Dlii~----iGGDGT-~L~a~~~~~~~~~PilG 65 (264)
+..||.++.++..-+..+...|... |.. . ....+|++|. =++||- +++..|.. ..++||+=
T Consensus 2 ~~~kILiVEDd~~l~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~DlvilDi~LP~~~G~~l~~~iR~~-~~~~pII~ 80 (229)
T PRK11083 2 QQPTILLVEDEQAIADTLVYALQSEGFTVEWFERGLPALDKLRQQPPDLVILDVGLPDISGFELCRQLRAF-HPALPVIF 80 (229)
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHH-CCCCEEEE
T ss_conf 99999999699999999999999889999998999999999971899899973889998768899999970-89972999
Q ss_pred ECC-------------CCCCCCCCCCCHHHHHHHHHHCCC
Q ss_conf 153-------------433201044587899986642012
Q gi|254780754|r 66 MNC-------------GSVGFLMNEYCIENLVERLSVAVE 92 (264)
Q Consensus 66 In~-------------G~lGFL~~~~~~~~~~~~l~~~~~ 92 (264)
+.. |--.|++-+|+.+++...+.....
T Consensus 81 lta~~~~~d~i~~l~~GADDYl~KPf~~~EL~aRi~a~lr 120 (229)
T PRK11083 81 LTARSDEVDRLVGLEIGADDYVAKPFSPREVAARVRTILR 120 (229)
T ss_pred EECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
T ss_conf 8367898999999975998773087428999999999997
No 268
>KOG2335 consensus
Probab=20.81 E-value=60 Score=13.45 Aligned_cols=55 Identities=31% Similarity=0.479 Sum_probs=38.0
Q ss_pred HHCCEEEEECCCH--HHHHHHHHHHHCCCEEEEECCC---------CCC-CCCCCCCHHHHHHHHHHCCC
Q ss_conf 5577999987954--8999999974128729941534---------332-01044587899986642012
Q gi|254780754|r 35 EEADVIVVLGGDG--FMLQSFHQSKEYDKPIYGMNCG---------SVG-FLMNEYCIENLVERLSVAVE 92 (264)
Q Consensus 35 ~~~Dlii~iGGDG--T~L~a~~~~~~~~~PilGIn~G---------~lG-FL~~~~~~~~~~~~l~~~~~ 92 (264)
++.-||+-+||+- +||.|++...++- -=+++|+| +.| ||++ +++-+.+.+.++..
T Consensus 72 ~D~PLIvQf~~ndp~~ll~Aa~lv~~y~-D~idlNcGCPq~~a~~g~yGa~L~~--~~eLv~e~V~~v~~ 138 (358)
T KOG2335 72 EDRPLIVQFGGNDPENLLKAARLVQPYC-DGIDLNCGCPQKVAKRGGYGAFLMD--NPELVGEMVSAVRA 138 (358)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHC-CCCCCCCCCCHHHHHCCCCCCEECC--CHHHHHHHHHHHHH
T ss_conf 7786699974799899999999865334-7204158998788843772600023--88999999999985
No 269
>PRK10063 predicted glycosyl transferase; Provisional
Probab=20.80 E-value=60 Score=13.45 Aligned_cols=47 Identities=15% Similarity=0.104 Sum_probs=25.1
Q ss_pred EEEEEEECCCHHHHHHHHHHHHHCC--CCCHHHCCEEEEECC--CHHHHHH
Q ss_conf 0599995599899999999998707--888455779999879--5489999
Q gi|254780754|r 6 QKIHFKASNAKKAQEAYDKFVKIYG--NSTSEEADVIVVLGG--DGFMLQS 52 (264)
Q Consensus 6 ~ki~i~~~~~~~a~~~~~~l~~~~~--~~~~~~~Dlii~iGG--DGT~L~a 52 (264)
|++-+|.-....++-+.+.+..... .....+.+.||+=|| |||+=-.
T Consensus 1 M~iSIITv~~N~~~~l~~Tl~Sv~~~~~~~~~~~E~IIIDGgStDgT~~ii 51 (248)
T PRK10063 1 MLLSVVTVAFRNLEGIVKTHASLRHLAQDPGISFEWIVVDGGSNDGTREYL 51 (248)
T ss_pred CEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHH
T ss_conf 969999994749899999999999986187898699999793961179999
No 270
>PRK06381 threonine synthase; Validated
Probab=20.78 E-value=49 Score=14.04 Aligned_cols=18 Identities=22% Similarity=0.106 Sum_probs=13.0
Q ss_pred CCEEEEECCCCHHHHHHH
Q ss_conf 350798226650446752
Q gi|254780754|r 152 CDGLVVSTPIGSTAYNFS 169 (264)
Q Consensus 152 ~DGvivSTptGSTAY~lS 169 (264)
-|-|+++..+|++.-..+
T Consensus 167 pD~vv~~vG~Gg~~~Gi~ 184 (319)
T PRK06381 167 PDYVAVPVGNGTTLAGIY 184 (319)
T ss_pred CCEEEEECCCCHHHHHHH
T ss_conf 998999789857799999
No 271
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A
Probab=20.77 E-value=59 Score=13.52 Aligned_cols=14 Identities=14% Similarity=0.169 Sum_probs=7.7
Q ss_pred EEEEECCCEEEEEC
Q ss_conf 17740886058630
Q gi|254780754|r 173 PILPLESRHLLLTP 186 (264)
Q Consensus 173 pIv~p~~~~~~itp 186 (264)
++-.|+-+++++..
T Consensus 234 al~~~~~~Vi~lDG 247 (361)
T TIGR03297 234 ALARPDQRVVCLDG 247 (361)
T ss_pred HHHCCCCEEEEEEC
T ss_conf 86288970899908
No 272
>cd01653 GATase1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA. and, the A4 beta-galactosidase middle domain. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-depende
Probab=20.67 E-value=61 Score=13.43 Aligned_cols=38 Identities=26% Similarity=0.486 Sum_probs=30.0
Q ss_pred CHHHCCEEEEECCCHHH---------HHHHHHHHHCCCEEEEECCCC
Q ss_conf 84557799998795489---------999999741287299415343
Q gi|254780754|r 33 TSEEADVIVVLGGDGFM---------LQSFHQSKEYDKPIYGMNCGS 70 (264)
Q Consensus 33 ~~~~~Dlii~iGGDGT~---------L~a~~~~~~~~~PilGIn~G~ 70 (264)
...+.|.+++-||.... ++..+.+...+.|++|+-.|.
T Consensus 43 ~~~~~d~liipgg~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~ 89 (115)
T cd01653 43 DLDDYDGLILPGGPGTPDDLARDEALLALLREAAAAGKPILGICLGA 89 (115)
T ss_pred CHHCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHCCCEEEEECHHH
T ss_conf 62008999989986329998639999999999998699899988588
No 273
>cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc). Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity.
Probab=20.65 E-value=61 Score=13.43 Aligned_cols=13 Identities=38% Similarity=0.547 Sum_probs=5.8
Q ss_pred EEEECCCHHHHHH
Q ss_conf 9998795489999
Q gi|254780754|r 40 IVVLGGDGFMLQS 52 (264)
Q Consensus 40 ii~iGGDGT~L~a 52 (264)
+|++=|||.|+-.
T Consensus 74 Vv~i~GDGsf~m~ 86 (196)
T cd02013 74 VVAIAGDGAWGMS 86 (196)
T ss_pred EEEEECCCCHHHC
T ss_conf 9999579734214
No 274
>TIGR00432 arcsn_tRNA_tgt archaeosine tRNA-ribosyltransferase; InterPro: IPR004804 The archaeosine tRNA-guanine transglycosylase (tgt) differs from the tgt of Escherichia coli and other bacteria in the site of action and the modification that results. It exchanges 7-cyano-7-deazaguanine (preQ0) with guanine at position 15 of archaeal tRNA; this nucleotide is subsequently converted to archaeosine, found exclusively in the archaea. In contrast, bacterial tgt catalyzes the exchange of preQ0 or preQ1 for the guanine base at position 34; this nucleotide is subsequently modified to queuosine (IPR004803 from INTERPRO). Archaeoglobus fulgidus has both enzymes. .
Probab=20.41 E-value=62 Score=13.40 Aligned_cols=96 Identities=16% Similarity=0.272 Sum_probs=54.2
Q ss_pred EEEEEEEEEEEECCCCCCEEEEEEEEEEEC-CEEEEEEEECCEEEEECCCCHHHHHHHCCCEEEEECCCEEEEECCCCCC
Q ss_conf 157753479972687642367888987667-8765312103507982266504467522981774088605863035433
Q gi|254780754|r 113 NILAINEVSIIRKPGQNQLVQAAKLEVKVD-DQVRLPELVCDGLVVSTPIGSTAYNFSALGPILPLESRHLLLTPVSPFK 191 (264)
Q Consensus 113 ~~~AlNEi~i~r~~~~~~~~~~~~~~v~id-~~~~~~~~~~DGvivSTptGSTAY~lSaGGpIv~p~~~~~~itpI~p~~ 191 (264)
...-+|+|-|.|+..++.+++ |+-. ||..++-=..|||+|-..-|.. .+|...+- |
T Consensus 526 el~~~~~~~~~RS~~TG~~R~-----~~~~~GE~~~~~R~~D~LL~~~~~GA~---------~L~K~~~y-------P-- 582 (658)
T TIGR00432 526 ELELLDDVKVVRSKTTGKLRQ-----VLDEDGELLFSVRASDNLLVLSEKGAK---------LLHKKIDY-------P-- 582 (658)
T ss_pred HHHCCCCEEEEEECCCCCEEE-----EEECCCEEEEEEECCCCEECCCHHHHH---------HHHCCCCC-------C--
T ss_conf 022016525898257782333-----350797089998647870222401135---------54138888-------8--
Q ss_pred HHHHHHCCCCCCCEEEEEECCCCCCEE--EEEEC-CEECCCCCEEEEEEC
Q ss_conf 011110027884148999748788758--99988-988148778999987
Q gi|254780754|r 192 PRRWHGAILPNDVMIEIQVLEHKQRPV--IATAD-RLAIEPVSRINVTQS 238 (264)
Q Consensus 192 l~~~rplVl~~~~~I~i~i~~~~~~~~--~~~~D-~~~~~~~~~i~I~~s 238 (264)
.||= ++..+++ ...++.+.+ ..+.| -.++++-++|.|--.
T Consensus 583 --~yRV-~VN~E~E----~FAR~G~~VFAKF~IDCD~~~R~~~EVL~VN~ 625 (658)
T TIGR00432 583 --KYRV-VVNKEAE----EFARKGKSVFAKFVIDCDEELRAYDEVLVVNE 625 (658)
T ss_pred --CEEE-EECCCCC----HHHHCCCCEEEEEEEECCCCCCCCCCEEEEEC
T ss_conf --2367-7616673----55537982788788725656687653688727
No 275
>cd03377 TPP_PFOR_PNO Thiamine pyrophosphate (TPP family), PFOR_PNO subfamily, TPP-binding module; composed of proteins similar to the single subunit pyruvate ferredoxin oxidoreductase (PFOR) of Desulfovibrio Africanus, present in bacteria and amitochondriate eukaryotes. This subfamily also includes proteins characterized as pyruvate NADP+ oxidoreductase (PNO). These enzymes are dependent on TPP and a divalent metal cation as cofactors. PFOR and PNO catalyze the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The PFOR from cyanobacterium Anabaena (NifJ) is required for the transfer of electrons from pyruvate to flavodoxin, which reduces nitrogenase. The facultative anaerobic mitochondrion of the photosynthetic protist Euglena gra
Probab=20.38 E-value=62 Score=13.39 Aligned_cols=26 Identities=19% Similarity=0.072 Sum_probs=13.3
Q ss_pred EECCCCHHHHHHHCCCEEEEECCCEE
Q ss_conf 82266504467522981774088605
Q gi|254780754|r 157 VSTPIGSTAYNFSALGPILPLESRHL 182 (264)
Q Consensus 157 vSTptGSTAY~lSaGGpIv~p~~~~~ 182 (264)
=|||.|+.|---++|-+.--.++-.|
T Consensus 200 kaTp~ga~akfa~~Gk~~~KKDl~~i 225 (365)
T cd03377 200 KATPLGAVAKFAAAGKRTGKKDLGMI 225 (365)
T ss_pred CCCCCCHHHHCCCCCCCCCCCHHHHH
T ss_conf 68864044310435765441329999
No 276
>PRK10569 NAD(P)H-dependent FMN reductase; Provisional
Probab=20.28 E-value=43 Score=14.39 Aligned_cols=17 Identities=35% Similarity=0.763 Sum_probs=13.0
Q ss_pred ECCEEEEECCCCHHHHH
Q ss_conf 03507982266504467
Q gi|254780754|r 151 VCDGLVVSTPIGSTAYN 167 (264)
Q Consensus 151 ~~DGvivSTptGSTAY~ 167 (264)
.+||+||+||.=.-+|+
T Consensus 66 ~AD~lIVaTPVYkaSys 82 (191)
T PRK10569 66 QADGLIVATPVYKASFS 82 (191)
T ss_pred HCCEEEEECCEECCCCC
T ss_conf 58979996760136452
No 277
>PRK12690 flgF flagellar basal body rod protein FlgF; Reviewed
Probab=20.09 E-value=63 Score=13.36 Aligned_cols=41 Identities=27% Similarity=0.406 Sum_probs=17.5
Q ss_pred EECCEEEEEEEECCEEEEECCCCHHHHHHHCCC-EE-EEECCCEEEEEC
Q ss_conf 667876531210350798226650446752298-17-740886058630
Q gi|254780754|r 140 KVDDQVRLPELVCDGLVVSTPIGSTAYNFSALG-PI-LPLESRHLLLTP 186 (264)
Q Consensus 140 ~id~~~~~~~~~~DGvivSTptGSTAY~lSaGG-pI-v~p~~~~~~itp 186 (264)
.-+|.|. .-.||.+| |+.|.- -|..+| || ++|+...+.|.|
T Consensus 99 TR~G~F~---~d~~G~Lv-t~~G~~--VL~~~g~pI~ip~~~~~~~I~~ 141 (237)
T PRK12690 99 TRAGAFT---PNAEGELV-TPDGYR--LLDAGGAPIFIPPDARSVAVGA 141 (237)
T ss_pred EECCCEE---ECCCCCEE-CCCCCE--EECCCCCCEEECCCCCEEEECC
T ss_conf 9736278---98998889-389989--1579998348379985379989
No 278
>TIGR00021 rpiA ribose 5-phosphate isomerase A; InterPro: IPR004788 Ribose 5-phosphate isomerase (5.3.1.6 from EC), also known as phosphoriboisomerase, catalyses the conversion of D-ribose 5-phosphate to D-ribulose 5-phosphate in the non-oxidative branch of the pentose phosphate pathway.; GO: 0004751 ribose-5-phosphate isomerase activity, 0009052 pentose-phosphate shunt non-oxidative branch.
Probab=20.06 E-value=53 Score=13.83 Aligned_cols=24 Identities=38% Similarity=0.545 Sum_probs=11.1
Q ss_pred EEEEECCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 2994153433201044587899986642
Q gi|254780754|r 62 PIYGMNCGSVGFLMNEYCIENLVERLSV 89 (264)
Q Consensus 62 PilGIn~G~lGFL~~~~~~~~~~~~l~~ 89 (264)
=++|+-||+- -.|-++.+-+.+.+
T Consensus 17 m~~GlGTGST----~~~~i~~LG~~v~~ 40 (236)
T TIGR00021 17 MVVGLGTGST----VAYFIEALGERVKQ 40 (236)
T ss_pred CEEEECCHHH----HHHHHHHHHHHHHC
T ss_conf 7898245046----89999999987436
Done!