HHsearch results for GI: 254780754 and protein with PDBid: 3pfn_A
>3pfn_A NAD kinase; structural genomics consortium, SNP, SGC, transferase; 2.70A {Homo sapiens}
Probab=100.00 E-value=0 Score=423.76 Aligned_cols=251 Identities=21% Similarity=0.331 Sum_probs=205.2
Q ss_pred CCEEEEEEECC-CHHHHHHHHHHHHHCCC--------------------------------------CCHHHCCEEEEEC
Q ss_conf 65059999559-98999999999987078--------------------------------------8845577999987
Q gi|254780754|r 4 NIQKIHFKASN-AKKAQEAYDKFVKIYGN--------------------------------------STSEEADVIVVLG 44 (264)
Q Consensus 4 ~~~ki~i~~~~-~~~a~~~~~~l~~~~~~--------------------------------------~~~~~~Dlii~iG 44 (264)
.-+++.++.+. .+++.+...++.+++.+ +..+++|+||+||
T Consensus 37 ~pk~vlii~K~~d~~~~~~~~el~~~L~~~g~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlvI~lG 116 (365)
T 3pfn_A 37 SPKSVLVIKKMRDASLLQPFKELCTHLMEENMIVYVEKKVLEDPAIASDESFGAVKKKFCTFREDYDDISNQIDFIICLG 116 (365)
T ss_dssp CCCEEEEEECTTCGGGHHHHHHHHHHHHHTSCEEEEEHHHHHSHHHHHCSTTHHHHHHCEEECTTTCCCTTTCSEEEEES
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEECCHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCEEEEEC
T ss_conf 99889999579997999999999999987899899861353071543345555334443315579567575668899976
Q ss_pred CCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEEEEECC------------------
Q ss_conf 95489999999741287299415343320104458789998664201243203443454212------------------
Q gi|254780754|r 45 GDGFMLQSFHQSKEYDKPIYGMNCGSVGFLMNEYCIENLVERLSVAVECTFHPLKMTVFDYD------------------ 106 (264)
Q Consensus 45 GDGT~L~a~~~~~~~~~PilGIn~G~lGFL~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~------------------ 106 (264)
||||||+|+|.+.+..+||||||+|+||||+ +++.+++.+.|.++..+.+..+++..+...
T Consensus 117 GDGTlL~a~~~~~~~~~PilGIN~G~LGFLt-~~~~~~~~~~l~~i~~g~~~i~~R~~L~~~v~~~~~~~~~~v~~~~~~ 195 (365)
T 3pfn_A 117 GDGTLLYASSLFQGSVPPVMAFHLGSLGFLT-PFSFENFQSQVTQVIEGNAAVVLRSRLKVRVVKELRGKKTAVHNGLGE 195 (365)
T ss_dssp STTHHHHHHHHCSSSCCCEEEEESSSCTTTC-CEESTTHHHHHHHHHHSCCBEEEECCEEEEEEC---------------
T ss_pred CCHHHHHHHHHHCCCCCCEEEEECCCCCCCC-CCCHHHHHHHHHHHHCCCCEEEEECCEEEEEEECCCCCCCCCCCCCCC
T ss_conf 8199999999851789828998379875276-575576999999998299769986045899985156653100234322
Q ss_pred -----------CCCCCEEEEEEEEEEEEECCCCCCEEEEEEEEEEECCEEEEEEEECCEEEEECCCCHHHHHHHCCCEEE
Q ss_conf -----------444420157753479972687642367888987667876531210350798226650446752298177
Q gi|254780754|r 107 -----------NSICAENILAINEVSIIRKPGQNQLVQAAKLEVKVDDQVRLPELVCDGLVVSTPIGSTAYNFSALGPIL 175 (264)
Q Consensus 107 -----------~~~~~~~~~AlNEi~i~r~~~~~~~~~~~~~~v~id~~~~~~~~~~DGvivSTptGSTAY~lSaGGpIv 175 (264)
.......++||||++|.|+... +++++++++||++ +++++||||||||||||||||+||||||+
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~ALNEvvI~r~~~~----~~~~~~v~idg~~-~~~~~aDGlIVSTPTGSTAYslSAGGPIv 270 (365)
T 3pfn_A 196 KGSQAAGLDMDVGKQAMQYQVLNEVVIDRGPSS----YLSNVDVYLDGHL-ITTVQGDGVIVSTPTGSTAYAAAAGASMI 270 (365)
T ss_dssp --------------CEEEEEESSEEEEECTTCS----SCCCEEEEETTEE-EEEECSSEEEEECGGGGGTHHHHTTCCEE
T ss_pred CCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCC----CEEEEEEEECCEE-EEEEECCCEEEECCCCCHHHHHHCCCCCC
T ss_conf 233322333456763530215547999538975----3478999888988-89982398699799961676875269853
Q ss_pred EECCCEEEEECCCCCCHHHHHHCCCCCCCEEEEEECCCCCCEEEEEECCE---ECCCCCEEEEEECCCCCEEEEECCC--
Q ss_conf 40886058630354330111100278841489997487887589998898---8148778999987995189996488--
Q gi|254780754|r 176 PLESRHLLLTPVSPFKPRRWHGAILPNDVMIEIQVLEHKQRPVIATADRL---AIEPVSRINVTQSSDITMRILSDSH-- 250 (264)
Q Consensus 176 ~p~~~~~~itpI~p~~l~~~rplVl~~~~~I~i~i~~~~~~~~~~~~D~~---~~~~~~~i~I~~s~~~~~~li~~~~-- 250 (264)
+|++++|++||||||+++. ||+|+|++++|+|++....+..+.++.||+ +++++++|+|++|+ .++++++..+
T Consensus 271 ~P~~~~i~ltPI~PhsLs~-RPiVlp~~~~I~I~v~~~~~~~~~v~~DG~~~~~l~~gd~I~I~~S~-~~~~~i~~~~~~ 348 (365)
T 3pfn_A 271 HPNVPAIMITPICPHSLSF-RPIVVPAGVELKIMLSPEARNTAWVSFDGRKRQEIRHGDSISITTSC-YPLPSICVRDPV 348 (365)
T ss_dssp CTTSCCEEEEEESCSSTTC-CCEEECTTCCEEEEECTTCSSCEEEEETTEEEEEECTTCEEEEEECS-SCEEEECSSCHH
T ss_pred CCCCCCEEEEECCCCCCCC-CCEEECCCCEEEEEECCCCCCCEEEEECCCCCEEECCCCEEEEEECC-CCEEEEEECCCC
T ss_conf 7662637860016663568-98885899879999844899878999869965784899899999889-836899978999
Q ss_pred CCHHHHHHHHHCC
Q ss_conf 8899988887517
Q gi|254780754|r 251 RSWSDRILTAQFS 263 (264)
Q Consensus 251 ~~f~~ril~~kF~ 263 (264)
++||++ |++|..
T Consensus 349 ~dff~~-Lr~kL~ 360 (365)
T 3pfn_A 349 SDWFES-LAQCLH 360 (365)
T ss_dssp HHHHHH-HHHHTT
T ss_pred CCHHHH-HHHHCC
T ss_conf 888999-998543