Query gi|254780754|ref|YP_003065167.1| inorganic polyphosphate/ATP-NAD kinase [Candidatus Liberibacter asiaticus str. psy62] Match_columns 264 No_of_seqs 129 out of 1944 Neff 6.3 Searched_HMMs 23785 Date Tue May 31 16:08:15 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780754.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 2an1_A Putative kinase; struct 100.0 0 0 431.8 23.3 253 1-263 1-286 (292) 2 3pfn_A NAD kinase; structural 100.0 0 0 423.8 23.3 251 4-263 37-360 (365) 3 2i2c_A Probable inorganic poly 100.0 0 0 416.0 25.8 245 6-263 1-262 (272) 4 1u0t_A Inorganic polyphosphate 100.0 0 0 418.1 22.9 250 4-263 3-298 (307) 5 1yt5_A Inorganic polyphosphate 100.0 0 0 418.0 19.5 242 6-263 1-252 (258) 6 1z0s_A Probable inorganic poly 100.0 0 0 380.1 20.0 238 3-261 27-273 (278) 7 2qv7_A Diacylglycerol kinase D 98.0 0.00059 2.5E-08 43.7 14.5 230 6-251 25-319 (337) 8 2bon_A Lipid kinase; DAG kinas 97.2 0.011 4.8E-07 35.6 15.8 198 35-253 81-322 (332) 9 1v4v_A UDP-N-acetylglucosamine 96.5 0.031 1.3E-06 32.9 9.9 73 1-73 1-128 (376) 10 3opy_A 6-phosphofructo-1-kinas 95.4 0.077 3.2E-06 30.4 7.8 53 36-91 688-756 (989) 11 3pfk_A Phosphofructokinase; tr 95.1 0.042 1.8E-06 32.0 5.9 40 35-75 92-141 (319) 12 1zxx_A 6-phosphofructokinase; 95.0 0.046 1.9E-06 31.8 5.8 52 35-90 92-153 (319) 13 2hig_A 6-phospho-1-fructokinas 95.0 0.043 1.8E-06 31.9 5.6 41 35-75 188-243 (487) 14 1pfk_A Phosphofructokinase; tr 94.7 0.064 2.7E-06 30.9 5.8 51 35-89 93-153 (320) 15 3hno_A Pyrophosphate-dependent 94.5 0.066 2.8E-06 30.8 5.5 41 35-75 103-158 (419) 16 3opy_B 6-phosphofructo-1-kinas 93.5 0.13 5.6E-06 28.9 5.6 52 36-90 662-729 (941) 17 3opy_B 6-phosphofructo-1-kinas 93.3 0.21 8.8E-06 27.6 6.3 54 35-91 275-360 (941) 18 3opy_A 6-phosphofructo-1-kinas 93.3 0.13 5.5E-06 28.9 5.2 56 35-94 303-391 (989) 19 2f48_A Diphosphate--fructose-6 92.8 0.26 1.1E-05 27.1 6.1 40 36-75 166-222 (555) 20 2a9v_A GMP synthase; NP_394403 91.2 0.23 9.8E-06 27.3 4.5 69 2-70 10-95 (212) 21 3dzc_A UDP-N-acetylglucosamine 90.2 0.92 3.9E-05 23.6 9.3 39 35-73 110-148 (396) 22 3m3p_A Glutamine amido transfe 89.9 0.55 2.3E-05 25.0 5.4 68 3-70 1-92 (250) 23 2v4u_A CTP synthase 2; pyrimid 89.9 0.26 1.1E-05 27.1 3.7 36 34-69 88-128 (289) 24 1gpw_B Amidotransferase HISH; 88.3 0.63 2.6E-05 24.6 4.8 65 6-70 1-87 (201) 25 1vgv_A UDP-N-acetylglucosamine 87.0 1.1 4.5E-05 23.1 5.3 39 35-73 85-123 (384) 26 3ot5_A UDP-N-acetylglucosamine 86.4 1.3 5.6E-05 22.5 5.6 39 35-73 113-151 (403) 27 2w7t_A CTP synthetase, putativ 85.8 0.59 2.5E-05 24.8 3.5 36 34-69 65-105 (273) 28 1ka9_H Imidazole glycerol phos 84.4 1.4 5.9E-05 22.4 4.9 65 6-70 3-85 (200) 29 2pln_A HP1043, response regula 84.1 2.1 8.7E-05 21.3 7.4 66 1-67 14-93 (137) 30 3jte_A Response regulator rece 84.0 2.1 8.9E-05 21.3 7.2 91 3-94 1-124 (143) 31 1oi4_A Hypothetical protein YH 83.7 1.5 6.2E-05 22.3 4.8 39 33-71 83-129 (193) 32 3c3m_A Response regulator rece 83.3 2.3 9.5E-05 21.1 6.5 90 3-93 1-123 (138) 33 1vco_A CTP synthetase; tetrame 82.9 0.47 2E-05 25.4 2.0 35 35-69 354-393 (550) 34 1g2i_A Protease I; intracellul 82.3 1.7 7.3E-05 21.8 4.7 40 32-71 57-104 (166) 35 1q7r_A Predicted amidotransfer 81.5 2.6 0.00011 20.7 6.6 66 3-70 21-104 (219) 36 3nva_A CTP synthase; rossman f 81.5 1.1 4.4E-05 23.2 3.3 36 34-69 348-388 (535) 37 1ta9_A Glycerol dehydrogenase; 81.1 2.1 8.8E-05 21.3 4.7 33 35-68 144-177 (450) 38 1s1m_A CTP synthase; CTP synth 80.8 1.9 8.1E-05 21.5 4.5 38 32-69 339-381 (545) 39 3beo_A UDP-N-acetylglucosamine 80.6 2.6 0.00011 20.8 5.0 38 36-73 95-132 (375) 40 1o1y_A Conserved hypothetical 80.3 1.6 6.9E-05 22.0 4.0 38 33-70 54-103 (239) 41 3h5i_A Response regulator/sens 79.7 3 0.00013 20.3 7.1 89 1-92 1-123 (140) 42 2iss_D Glutamine amidotransfer 79.5 1.6 6.5E-05 22.1 3.6 62 6-70 21-101 (208) 43 3kto_A Response regulator rece 77.6 3.5 0.00015 19.9 8.7 92 1-92 1-125 (136) 44 2a9o_A Response regulator; ess 77.4 3.5 0.00015 19.9 6.7 85 5-91 1-116 (120) 45 2gru_A 2-deoxy-scyllo-inosose 76.6 2.5 0.00011 20.8 4.0 36 32-68 90-128 (368) 46 1jvn_A Glutamine, bifunctional 76.4 2.1 8.8E-05 21.3 3.5 66 3-70 2-89 (555) 47 1p2f_A Response regulator; DRR 76.2 3.8 0.00016 19.7 7.4 87 5-92 2-116 (220) 48 1rrm_A Lactaldehyde reductase; 75.8 3.3 0.00014 20.1 4.4 22 35-57 87-108 (386) 49 3fse_A Two-domain protein cont 75.7 3.9 0.00017 19.6 5.1 39 33-71 70-116 (365) 50 1wl8_A GMP synthase [glutamine 75.5 3.4 0.00014 20.0 4.4 64 6-70 1-82 (189) 51 1xhf_A DYE resistance, aerobic 75.4 4 0.00017 19.5 5.0 82 7-91 5-118 (123) 52 3efe_A THIJ/PFPI family protei 73.7 2.8 0.00012 20.5 3.6 38 34-71 72-116 (212) 53 3nhm_A Response regulator; pro 73.3 4.5 0.00019 19.2 5.8 87 4-91 2-120 (133) 54 2vpi_A GMP synthase; guanine m 73.3 2.1 8.6E-05 21.4 2.9 65 6-70 25-106 (218) 55 1vlj_A NADH-dependent butanol 73.3 4.5 0.00019 19.2 5.6 63 5-68 43-151 (407) 56 3cnb_A DNA-binding response re 72.4 4.7 0.0002 19.1 8.0 92 1-93 1-130 (143) 57 3crn_A Response regulator rece 72.3 4.7 0.0002 19.1 7.1 87 4-92 2-120 (132) 58 2o6l_A UDP-glucuronosyltransfe 72.2 2.2 9.2E-05 21.2 2.8 25 151-175 86-110 (170) 59 1kq3_A Glycerol dehydrogenase; 71.8 4.9 0.0002 19.0 4.9 33 35-68 93-126 (376) 60 2vrn_A Protease I, DR1199; cys 71.8 4.9 0.0002 19.0 4.8 39 33-71 72-119 (190) 61 1qdl_B Protein (anthranilate s 71.5 5 0.00021 18.9 5.6 65 5-70 1-87 (195) 62 3jzd_A Iron-containing alcohol 71.2 3.2 0.00014 20.1 3.5 33 35-68 88-121 (358) 63 3iv7_A Alcohol dehydrogenase I 71.0 3.1 0.00013 20.2 3.3 33 35-68 87-120 (364) 64 3ia7_A CALG4; glycosysltransfe 70.2 5.3 0.00022 18.8 4.5 33 35-69 101-133 (402) 65 3cg0_A Response regulator rece 70.1 5.3 0.00022 18.8 8.2 87 3-92 7-127 (140) 66 3cne_A Putative protease I; st 69.1 5.6 0.00023 18.6 5.1 37 34-70 64-114 (175) 67 1ydh_A AT5G11950; structural g 68.8 5.3 0.00022 18.8 4.1 63 2-69 6-74 (216) 68 3okf_A 3-dehydroquinate syntha 68.7 4.8 0.0002 19.1 3.9 36 32-68 119-157 (390) 69 3a10_A Response regulator; pho 67.9 5.9 0.00025 18.5 7.1 84 5-90 1-114 (116) 70 1sg6_A Pentafunctional AROM po 66.5 6.3 0.00026 18.3 4.7 34 34-68 103-139 (393) 71 1s3l_A Hypothetical protein MJ 66.0 6.4 0.00027 18.2 4.9 59 3-70 23-84 (190) 72 1o2d_A Alcohol dehydrogenase, 65.1 5.7 0.00024 18.5 3.7 32 36-68 98-148 (371) 73 3mgk_A Intracellular protease/ 65.0 4.6 0.00019 19.2 3.2 38 33-70 62-107 (211) 74 2ab0_A YAJL; DJ-1/THIJ superfa 64.7 6.4 0.00027 18.3 3.9 36 35-70 65-109 (205) 75 3hbf_A Flavonoid 3-O-glucosylt 64.6 3.9 0.00017 19.6 2.8 28 36-66 117-144 (454) 76 3ce9_A Glycerol dehydrogenase; 64.5 6.9 0.00029 18.0 7.2 64 4-68 33-120 (354) 77 2jzc_A UDP-N-acetylglucosamine 63.7 2.6 0.00011 20.7 1.8 28 151-178 132-160 (224) 78 2nv0_A Glutamine amidotransfer 63.4 7.2 0.0003 17.9 5.9 66 5-70 1-82 (196) 79 1gpm_A GMP synthetase, XMP ami 63.4 2 8.2E-05 21.5 1.1 70 1-70 1-89 (525) 80 2fex_A Conserved hypothetical 63.4 7.2 0.0003 17.9 4.1 39 33-71 60-105 (188) 81 1xah_A Sadhqs, 3-dehydroquinat 62.7 7.4 0.00031 17.8 4.6 46 18-64 72-120 (354) 82 1qo0_D AMIR; binding protein, 62.4 7.5 0.00031 17.8 7.8 85 7-92 14-124 (196) 83 2iya_A OLEI, oleandomycin glyc 62.2 7.6 0.00032 17.8 4.9 32 35-69 108-139 (424) 84 3b2n_A Uncharacterized protein 61.4 7.8 0.00033 17.7 9.4 90 3-94 1-124 (133) 85 2c1x_A UDP-glucose flavonoid 3 61.4 4.9 0.0002 19.0 2.8 30 36-68 112-141 (456) 86 2qr3_A Two-component system re 61.1 7.9 0.00033 17.7 6.5 88 4-93 2-126 (140) 87 2qv0_A Protein MRKE; structura 60.9 8 0.00033 17.6 6.0 90 1-92 5-126 (143) 88 3hdv_A Response regulator; PSI 60.7 8 0.00034 17.6 7.3 84 7-91 9-125 (136) 89 1vhq_A Enhancing lycopene bios 59.9 8.3 0.00035 17.5 5.0 38 33-70 87-143 (232) 90 2pju_A Propionate catabolism o 59.9 8.3 0.00035 17.5 5.9 44 35-93 62-105 (225) 91 3noq_A THIJ/PFPI family protei 59.5 8.4 0.00035 17.5 4.0 38 33-70 62-107 (231) 92 1fy2_A Aspartyl dipeptidase; s 59.0 8.6 0.00036 17.4 4.9 37 35-71 78-124 (229) 93 2acv_A Triterpene UDP-glucosyl 58.8 5.4 0.00023 18.7 2.7 20 36-55 114-133 (463) 94 2pl1_A Transcriptional regulat 56.9 9.3 0.00039 17.2 7.1 84 6-91 1-116 (121) 95 2q5c_A NTRC family transcripti 56.8 9.3 0.00039 17.2 6.2 76 1-93 1-93 (196) 96 3cz5_A Two-component response 56.8 9.4 0.00039 17.2 6.3 92 1-94 1-126 (153) 97 1zh2_A KDP operon transcriptio 55.8 9.7 0.00041 17.1 6.5 84 5-91 1-116 (121) 98 3kht_A Response regulator; PSI 54.9 10 0.00042 17.0 5.2 93 1-94 1-129 (144) 99 3f5d_A Protein YDEA; unknow pr 53.6 10 0.00043 16.9 3.4 69 3-71 1-104 (206) 100 3eqz_A Response regulator; str 53.2 11 0.00045 16.8 6.7 87 3-91 1-123 (135) 101 3e3x_A BIPA; MCSG,PSI2, struct 53.2 11 0.00045 16.8 4.0 51 131-184 193-248 (332) 102 1z2w_A Vacuolar protein sortin 53.0 6.2 0.00026 18.3 2.2 64 2-70 7-72 (192) 103 2iyf_A OLED, oleandomycin glyc 52.8 11 0.00046 16.8 5.1 34 35-71 103-136 (430) 104 1ujn_A Dehydroquinate synthase 52.6 11 0.00046 16.8 4.0 35 33-68 81-118 (348) 105 3c65_A Uvrabc system protein C 52.3 9.3 0.00039 17.2 3.0 65 5-69 47-118 (226) 106 3iaa_A CALG2; glycosyltransfer 52.2 11 0.00047 16.7 4.7 24 152-175 314-337 (416) 107 2kkn_A Uncharacterized protein 52.1 6.9 0.00029 18.0 2.3 61 3-70 20-82 (178) 108 3gt7_A Sensor protein; structu 52.0 11 0.00047 16.7 6.2 91 1-92 3-126 (154) 109 3cfy_A Putative LUXO repressor 51.1 12 0.00048 16.6 6.1 90 1-92 1-121 (137) 110 2nrr_A Uvrabc system protein C 50.1 12 0.0005 16.5 6.2 64 5-70 50-115 (159) 111 1uf3_A Hypothetical protein TT 50.1 12 0.0005 16.5 7.5 61 1-70 1-72 (228) 112 3hdg_A Uncharacterized protein 50.0 12 0.0005 16.5 6.5 88 1-90 3-122 (137) 113 1t35_A Hypothetical protein YV 50.0 11 0.00047 16.7 3.1 60 5-69 1-66 (191) 114 2rk3_A Protein DJ-1; parkinson 49.6 12 0.00051 16.5 4.0 36 36-71 66-110 (197) 115 2ywd_A Glutamine amidotransfer 49.2 12 0.00052 16.4 4.0 39 32-70 35-84 (191) 116 1i1q_B Anthranilate synthase c 49.1 7.6 0.00032 17.8 2.1 34 36-70 47-86 (192) 117 1eiw_A Hypothetical protein MT 49.0 8.5 0.00036 17.5 2.4 40 29-68 31-75 (111) 118 3fij_A LIN1909 protein; 11172J 48.9 12 0.00052 16.4 3.7 36 35-70 60-118 (254) 119 3gl9_A Response regulator; bet 47.8 13 0.00055 16.3 7.7 84 7-91 4-120 (122) 120 1a9x_B Carbamoyl phosphate syn 47.1 12 0.00049 16.6 2.8 14 150-163 230-243 (379) 121 3clh_A 3-dehydroquinate syntha 46.7 14 0.00057 16.2 4.2 51 17-68 66-119 (343) 122 2r25_B Osmosensing histidine p 46.6 14 0.00057 16.2 8.8 84 7-91 4-125 (133) 123 1u9c_A APC35852; structural ge 46.5 14 0.00057 16.2 4.7 44 32-75 85-137 (224) 124 3cg4_A Response regulator rece 44.9 14 0.0006 16.0 6.3 91 1-92 3-126 (142) 125 2p6p_A Glycosyl transferase; G 44.7 14 0.00061 16.0 5.3 31 35-68 106-136 (384) 126 3gra_A Transcriptional regulat 44.3 15 0.00062 16.0 4.4 38 33-70 68-111 (202) 127 3hl0_A Maleylacetate reductase 44.0 15 0.00062 15.9 3.5 33 35-68 86-119 (353) 128 2zay_A Response regulator rece 43.8 15 0.00063 15.9 5.5 90 4-93 7-128 (147) 129 3klo_A Transcriptional regulat 42.7 16 0.00065 15.8 9.6 92 3-94 5-130 (225) 130 3n7t_A Macrophage binding prot 41.3 16 0.00069 15.7 5.6 46 30-75 99-153 (247) 131 1f0k_A MURG, UDP-N-acetylgluco 41.3 16 0.00069 15.7 3.6 32 36-68 96-127 (364) 132 2ywj_A Glutamine amidotransfer 41.2 16 0.00069 15.7 3.9 39 32-70 33-78 (186) 133 2qvg_A Two component response 39.0 18 0.00074 15.4 7.3 87 1-88 1-130 (143) 134 3ewn_A THIJ/PFPI family protei 39.0 18 0.00075 15.4 3.7 36 35-70 83-127 (253) 135 1rrv_A Glycosyltransferase GTF 38.8 18 0.00075 15.4 3.5 29 36-64 94-122 (416) 136 2qip_A Protein of unknown func 37.9 18 0.00077 15.3 4.3 33 35-67 107-140 (165) 137 2a4x_A Mitomycin-binding prote 37.5 19 0.00079 15.3 3.5 95 1-98 1-100 (138) 138 1iir_A Glycosyltransferase GTF 36.8 19 0.0008 15.2 3.5 32 35-66 92-123 (415) 139 3ca8_A Protein YDCF; two domai 36.8 19 0.00081 15.2 4.1 43 31-75 31-75 (266) 140 2f62_A Nucleoside 2-deoxyribos 36.6 19 0.00081 15.2 6.5 34 35-69 66-107 (161) 141 3lua_A Response regulator rece 36.5 19 0.00082 15.2 7.7 89 4-92 2-126 (140) 142 3eod_A Protein HNR; response r 36.2 20 0.00082 15.2 5.9 65 1-67 1-86 (130) 143 1e0t_A Pyruvate kinase, PK; ph 35.4 20 0.00085 15.1 3.0 52 148-203 367-423 (470) 144 2a33_A Hypothetical protein; s 35.1 20 0.00086 15.1 3.7 63 3-69 11-78 (215) 145 3ot1_A 4-methyl-5(B-hydroxyeth 34.7 21 0.00087 15.0 4.6 39 33-71 68-115 (208) 146 1dc7_A NTRC, nitrogen regulati 34.4 13 0.00056 16.2 1.5 85 7-92 5-120 (124) 147 2gkg_A Response regulator homo 34.4 21 0.00088 15.0 8.7 87 4-91 3-123 (127) 148 2rjn_A Response regulator rece 34.4 21 0.00088 15.0 8.4 91 1-93 1-126 (154) 149 3l3b_A ES1 family protein; ssg 34.2 21 0.00089 15.0 4.8 39 29-67 100-158 (242) 150 1su1_A Hypothetical protein YF 33.9 21 0.0009 14.9 4.9 39 3-45 23-61 (208) 151 3h4t_A Glycosyltransferase GTF 33.7 21 0.0009 14.9 5.1 35 35-69 91-125 (404) 152 3khd_A Pyruvate kinase; malari 33.2 22 0.00092 14.9 3.2 36 148-187 415-450 (520) 153 1i3c_A Response regulator RCP1 32.6 22 0.00094 14.8 5.1 88 6-94 9-138 (149) 154 1p6q_A CHEY2; chemotaxis, sign 32.4 23 0.00095 14.8 8.4 85 6-91 7-125 (129) 155 1j5p_A Aspartate dehydrogenase 32.3 23 0.00095 14.8 4.8 40 34-76 58-97 (253) 156 1ys7_A Transcriptional regulat 31.2 24 0.00099 14.7 6.9 90 1-91 1-123 (233) 157 3o1n_A 3-dehydroquinate dehydr 30.1 23 0.00096 14.7 2.1 10 152-161 190-199 (276) 158 2vxo_A GMP synthase [glutamine 30.0 25 0.001 14.5 2.9 66 5-70 29-111 (697) 159 1kgs_A DRRD, DNA binding respo 29.8 25 0.001 14.5 7.8 84 6-90 3-117 (225) 160 1weh_A Conserved hypothetical 29.5 25 0.0011 14.5 3.1 61 5-69 1-65 (171) 161 3bbn_B Ribosomal protein S2; s 28.9 26 0.0011 14.4 4.2 30 36-66 157-186 (231) 162 1dbw_A Transcriptional regulat 28.8 26 0.0011 14.4 9.0 86 6-93 4-121 (126) 163 2kdd_A Borealin; protein dimer 28.7 14 0.00058 16.1 0.8 24 164-187 6-29 (76) 164 1jbe_A Chemotaxis protein CHEY 28.4 26 0.0011 14.4 8.8 88 2-91 2-123 (128) 165 2qxy_A Response regulator; reg 28.3 26 0.0011 14.3 7.4 85 7-93 6-121 (142) 166 2ywb_A GMP synthase [glutamine 27.7 12 0.00049 16.6 0.3 63 8-70 2-81 (503) 167 1mb3_A Cell division response 27.7 27 0.0011 14.3 7.0 86 6-92 2-120 (124) 168 2gwr_A DNA-binding response re 27.5 27 0.0011 14.3 7.4 91 1-92 1-121 (238) 169 3er6_A Putative transcriptiona 26.8 28 0.0012 14.2 3.7 36 35-70 73-118 (209) 170 1qkk_A DCTD, C4-dicarboxylate 26.3 29 0.0012 14.1 8.9 85 7-93 5-121 (155) 171 3ehd_A Uncharacterized conserv 25.9 29 0.0012 14.1 4.4 34 35-69 68-106 (162) 172 2yr1_A 3-dehydroquinate dehydr 25.6 30 0.0012 14.0 3.0 15 150-164 168-182 (257) 173 1thg_A Lipase; hydrolase(carbo 25.3 30 0.0013 14.0 3.3 38 38-75 124-173 (544) 174 3l4e_A Uncharacterized peptida 25.2 30 0.0013 14.0 4.3 13 152-164 112-124 (206) 175 3bfj_A 1,3-propanediol oxidore 24.9 30 0.0013 14.0 3.5 21 36-57 92-112 (387) 176 1llf_A Lipase 3; candida cylin 24.1 32 0.0013 13.9 2.3 38 38-75 116-165 (534) 177 2qsj_A DNA-binding response re 23.9 32 0.0013 13.8 8.6 90 4-95 2-126 (154) 178 2z0m_A 337AA long hypothetical 23.1 22 0.00091 14.9 0.9 21 152-172 220-240 (337) 179 1f8y_A Nucleoside 2-deoxyribos 23.0 33 0.0014 13.7 4.0 34 35-69 77-115 (157) 180 1dz3_A Stage 0 sporulation pro 22.6 34 0.0014 13.7 5.7 85 6-91 3-121 (130) 181 1rw7_A YDR533CP; alpha-beta sa 22.4 34 0.0014 13.7 4.9 45 30-74 92-145 (243) 182 2nrt_A Uvrabc system protein C 22.3 34 0.0014 13.6 7.3 62 6-69 56-119 (220) 183 1k66_A Phytochrome response re 22.1 35 0.0015 13.6 2.2 59 36-94 62-139 (149) 184 2b4y_A NAD-dependent deacetyla 21.9 35 0.0015 13.6 2.9 23 35-64 17-39 (271) 185 1sfl_A 3-dehydroquinate dehydr 21.9 35 0.0015 13.6 3.0 41 49-91 49-93 (238) 186 3lft_A Uncharacterized protein 21.4 36 0.0015 13.5 3.7 34 35-69 61-94 (295) 187 3kwm_A Ribose-5-phosphate isom 21.4 33 0.0014 13.7 1.6 27 36-62 25-51 (224) 188 3lte_A Response regulator; str 21.3 36 0.0015 13.5 8.1 58 4-62 5-81 (132) 189 1m2k_A Silent information regu 21.1 36 0.0015 13.5 3.4 13 36-48 11-23 (249) 190 3ilh_A Two component response 20.9 37 0.0015 13.5 10.6 90 3-93 7-139 (146) 191 2abw_A PDX2 protein, glutamina 20.8 37 0.0015 13.5 3.7 65 6-70 4-90 (227) 192 3hbm_A UDP-sugar hydrolase; PS 20.6 37 0.0016 13.4 3.5 22 151-174 225-247 (282) 193 1jq5_A Glycerol dehydrogenase; 20.5 37 0.0016 13.4 3.3 33 35-68 85-118 (370) 194 3f6p_A Transcriptional regulat 20.3 37 0.0016 13.4 8.0 82 7-91 4-117 (120) No 1 >2an1_A Putative kinase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, transferase; 2.00A {Salmonella typhimurium LT2} Probab=100.00 E-value=0 Score=431.84 Aligned_cols=253 Identities=23% Similarity=0.358 Sum_probs=214.3 Q ss_pred CCCCCEEEEEEECC-CHHHHHHHHHHHHHCCCC--------------------------CHHHCCEEEEECCCHHHHHHH Q ss_conf 98765059999559-989999999999870788--------------------------845577999987954899999 Q gi|254780754|r 1 MDRNIQKIHFKASN-AKKAQEAYDKFVKIYGNS--------------------------TSEEADVIVVLGGDGFMLQSF 53 (264) Q Consensus 1 m~~~~~ki~i~~~~-~~~a~~~~~~l~~~~~~~--------------------------~~~~~Dlii~iGGDGT~L~a~ 53 (264) |.+.+|+|+++++. .+.+.++++++.+++.+. ..+++|++|++|||||||+|+ T Consensus 1 M~~~~k~Igiv~~~~~~~~~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~Dlvi~iGGDGT~L~a~ 80 (292) T 2an1_A 1 MNNHFKCIGIVGHPRHPTALTTHEMLYRWLCDQGYEVIVEQQIAHELQLKNVPTGTLAEIGQQADLAVVVGGDGNMLGAA 80 (292) T ss_dssp ---CCCEEEEECC-------CHHHHHHHHHHHTTCEEEEEHHHHHHTTCSSCCEECHHHHHHHCSEEEECSCHHHHHHHH T ss_pred CCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEECHHHHHHCCCCCCCCCCHHHCCCCCCEEEEECCCHHHHHHH T ss_conf 99779589999539998999999999999997889999968888664877777554445055777899992685799999 Q ss_pred HHHHHCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEEEEEC---CCCCCCEEEEEEEEEEEEECCCCCC Q ss_conf 9974128729941534332010445878999866420124320344345421---2444420157753479972687642 Q gi|254780754|r 54 HQSKEYDKPIYGMNCGSVGFLMNEYCIENLVERLSVAVECTFHPLKMTVFDY---DNSICAENILAINEVSIIRKPGQNQ 130 (264) Q Consensus 54 ~~~~~~~~PilGIn~G~lGFL~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~AlNEi~i~r~~~~~~ 130 (264) |.+.+.++||+|||+|++|||+ +++++++.+.+.++..+.+..+++..+.. ......+.++||||++|.|+... T Consensus 81 ~~~~~~~~PilGIn~G~lGFL~-~~~~~~~~~~l~~~~~g~~~~~~r~~l~~~~~~~~~~~~~~~AlNdvvi~~~~~~-- 157 (292) T 2an1_A 81 RTLARYDINVIGINRGNLGFLT-DLDPDNALQQLSDVLEGRYISEKRFLLEAQVCQQDRQKRISTAINEVVLHPGKVA-- 157 (292) T ss_dssp HHHTTSSCEEEEBCSSSCCSSC-CBCTTSHHHHHHHHHTTCEEEEEEEEEEEEEECC----CEEEESSEEEEEESSTT-- T ss_pred HHHCCCCCCEEEEECCCCEEEE-ECCCHHHHHHHHHHHHCCCEEEEEEEEEEEEEECCCCHHHHHHHEEEEECCCCCC-- T ss_conf 9837689838987658842477-3361138999999873673132344567776411110000212015540268853-- Q ss_pred EEEEEEEEEEECCEEEEEEEECCEEEEECCCCHHHHHHHCCCEEEEECCCEEEEECCCCCCHHHHHHCCCCCCCEEEEEE Q ss_conf 36788898766787653121035079822665044675229817740886058630354330111100278841489997 Q gi|254780754|r 131 LVQAAKLEVKVDDQVRLPELVCDGLVVSTPIGSTAYNFSALGPILPLESRHLLLTPVSPFKPRRWHGAILPNDVMIEIQV 210 (264) Q Consensus 131 ~~~~~~~~v~id~~~~~~~~~~DGvivSTptGSTAY~lSaGGpIv~p~~~~~~itpI~p~~l~~~rplVl~~~~~I~i~i 210 (264) +++++++++||++ +.+|+|||+||||||||||||+||||||++|+++++++||||||+++. ||+|+|++++|++++ T Consensus 158 --~~~~~~v~id~~~-~~~~~gDGlIvSTptGSTAY~lSaGGpIv~p~~~~~~itpI~p~~l~~-rplV~~~~~~i~i~~ 233 (292) T 2an1_A 158 --HMIEFEVYIDETF-AFSQRSDGLIISTPTGSTAYSLSAGGPILTPSLDAITLVPMFPHTLSA-RPLVINSSSTIRLRF 233 (292) T ss_dssp --CCEEEEEEETTEE-EEEEEESEEEEECTGGGGTHHHHTTCCEECTTCSEEEEEEESCSSTTC-CCEEEETTCCEEEEE T ss_pred --EEEEEEEEECCCC-CEEECCCCEEECCCCCHHHHHHHCCCCCCCCCHHEEEEEECCCCCCCC-CCCCCCCCEEEEEEE T ss_conf --3799999845621-447745889998667657999768997427312004531225766667-970249963999997 Q ss_pred CCCCCCEEEEEECCE---ECCCCCEEEEEECCCCCEEEEECCCCCHHHHHHHHHCC Q ss_conf 487887589998898---81487789999879951899964888899988887517 Q gi|254780754|r 211 LEHKQRPVIATADRL---AIEPVSRINVTQSSDITMRILSDSHRSWSDRILTAQFS 263 (264) Q Consensus 211 ~~~~~~~~~~~~D~~---~~~~~~~i~I~~s~~~~~~li~~~~~~f~~ril~~kF~ 263 (264) .. ..+++.++.||+ ++.+++.|+|++|+ ..++++++++++||++ |++||. T Consensus 234 ~~-~~~~~~l~~DG~~~~~l~~gd~I~I~~s~-~~~~lv~~~~~~f~~~-L~~KL~ 286 (292) T 2an1_A 234 SH-RRSDLEISCDSQIALPIQEGEDVLIRRCD-YHLNLIHPKDYSYFNT-LSTKLG 286 (292) T ss_dssp CC----CEEEEETTSCCEEECTTCEEEEEEEE-EEEEEEEETTCCHHHH-HHHHHT T ss_pred CC-CCCCEEEEEECCCCEEECCCCEEEEEECC-CEEEEEECCCCCHHHH-HHHHCC T ss_conf 48-99878999938800870899799999899-8799998299999999-987778 No 2 >3pfn_A NAD kinase; structural genomics consortium, SNP, SGC, transferase; 2.70A {Homo sapiens} Probab=100.00 E-value=0 Score=423.76 Aligned_cols=251 Identities=21% Similarity=0.331 Sum_probs=205.2 Q ss_pred CCEEEEEEECC-CHHHHHHHHHHHHHCCC--------------------------------------CCHHHCCEEEEEC Q ss_conf 65059999559-98999999999987078--------------------------------------8845577999987 Q gi|254780754|r 4 NIQKIHFKASN-AKKAQEAYDKFVKIYGN--------------------------------------STSEEADVIVVLG 44 (264) Q Consensus 4 ~~~ki~i~~~~-~~~a~~~~~~l~~~~~~--------------------------------------~~~~~~Dlii~iG 44 (264) .-+++.++.+. .+++.+...++.+++.+ +..+++|+||+|| T Consensus 37 ~pk~vlii~K~~d~~~~~~~~el~~~L~~~g~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlvI~lG 116 (365) T 3pfn_A 37 SPKSVLVIKKMRDASLLQPFKELCTHLMEENMIVYVEKKVLEDPAIASDESFGAVKKKFCTFREDYDDISNQIDFIICLG 116 (365) T ss_dssp CCCEEEEEECTTCGGGHHHHHHHHHHHHHTSCEEEEEHHHHHSHHHHHCSTTHHHHHHCEEECTTTCCCTTTCSEEEEES T ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEECCHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCEEEEEC T ss_conf 99889999579997999999999999987899899861353071543345555334443315579567575668899976 Q ss_pred CCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEEEEECC------------------ Q ss_conf 95489999999741287299415343320104458789998664201243203443454212------------------ Q gi|254780754|r 45 GDGFMLQSFHQSKEYDKPIYGMNCGSVGFLMNEYCIENLVERLSVAVECTFHPLKMTVFDYD------------------ 106 (264) Q Consensus 45 GDGT~L~a~~~~~~~~~PilGIn~G~lGFL~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~------------------ 106 (264) ||||||+|+|.+.+..+||||||+|+||||+ +++.+++.+.|.++..+.+..+++..+... T Consensus 117 GDGTlL~a~~~~~~~~~PilGIN~G~LGFLt-~~~~~~~~~~l~~i~~g~~~i~~R~~L~~~v~~~~~~~~~~v~~~~~~ 195 (365) T 3pfn_A 117 GDGTLLYASSLFQGSVPPVMAFHLGSLGFLT-PFSFENFQSQVTQVIEGNAAVVLRSRLKVRVVKELRGKKTAVHNGLGE 195 (365) T ss_dssp STTHHHHHHHHCSSSCCCEEEEESSSCTTTC-CEESTTHHHHHHHHHHSCCBEEEECCEEEEEEC--------------- T ss_pred CCHHHHHHHHHHCCCCCCEEEEECCCCCCCC-CCCHHHHHHHHHHHHCCCCEEEEECCEEEEEEECCCCCCCCCCCCCCC T ss_conf 8199999999851789828998379875276-575576999999998299769986045899985156653100234322 Q ss_pred -----------CCCCCEEEEEEEEEEEEECCCCCCEEEEEEEEEEECCEEEEEEEECCEEEEECCCCHHHHHHHCCCEEE Q ss_conf -----------444420157753479972687642367888987667876531210350798226650446752298177 Q gi|254780754|r 107 -----------NSICAENILAINEVSIIRKPGQNQLVQAAKLEVKVDDQVRLPELVCDGLVVSTPIGSTAYNFSALGPIL 175 (264) Q Consensus 107 -----------~~~~~~~~~AlNEi~i~r~~~~~~~~~~~~~~v~id~~~~~~~~~~DGvivSTptGSTAY~lSaGGpIv 175 (264) .......++||||++|.|+... +++++++++||++ +++++||||||||||||||||+||||||+ T Consensus 196 ~~~~~~~~~~~~~~~~~~~~ALNEvvI~r~~~~----~~~~~~v~idg~~-~~~~~aDGlIVSTPTGSTAYslSAGGPIv 270 (365) T 3pfn_A 196 KGSQAAGLDMDVGKQAMQYQVLNEVVIDRGPSS----YLSNVDVYLDGHL-ITTVQGDGVIVSTPTGSTAYAAAAGASMI 270 (365) T ss_dssp --------------CEEEEEESSEEEEECTTCS----SCCCEEEEETTEE-EEEECSSEEEEECGGGGGTHHHHTTCCEE T ss_pred CCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCC----CEEEEEEEECCEE-EEEEECCCEEEECCCCCHHHHHHCCCCCC T ss_conf 233322333456763530215547999538975----3478999888988-89982398699799961676875269853 Q ss_pred EECCCEEEEECCCCCCHHHHHHCCCCCCCEEEEEECCCCCCEEEEEECCE---ECCCCCEEEEEECCCCCEEEEECCC-- Q ss_conf 40886058630354330111100278841489997487887589998898---8148778999987995189996488-- Q gi|254780754|r 176 PLESRHLLLTPVSPFKPRRWHGAILPNDVMIEIQVLEHKQRPVIATADRL---AIEPVSRINVTQSSDITMRILSDSH-- 250 (264) Q Consensus 176 ~p~~~~~~itpI~p~~l~~~rplVl~~~~~I~i~i~~~~~~~~~~~~D~~---~~~~~~~i~I~~s~~~~~~li~~~~-- 250 (264) +|++++|++||||||+++. ||+|+|++++|+|++....+..+.++.||+ +++++++|+|++|+ .++++++..+ T Consensus 271 ~P~~~~i~ltPI~PhsLs~-RPiVlp~~~~I~I~v~~~~~~~~~v~~DG~~~~~l~~gd~I~I~~S~-~~~~~i~~~~~~ 348 (365) T 3pfn_A 271 HPNVPAIMITPICPHSLSF-RPIVVPAGVELKIMLSPEARNTAWVSFDGRKRQEIRHGDSISITTSC-YPLPSICVRDPV 348 (365) T ss_dssp CTTSCCEEEEEESCSSTTC-CCEEECTTCCEEEEECTTCSSCEEEEETTEEEEEECTTCEEEEEECS-SCEEEECSSCHH T ss_pred CCCCCCEEEEECCCCCCCC-CCEEECCCCEEEEEECCCCCCCEEEEECCCCCEEECCCCEEEEEECC-CCEEEEEECCCC T ss_conf 7662637860016663568-98885899879999844899878999869965784899899999889-836899978999 Q ss_pred CCHHHHHHHHHCC Q ss_conf 8899988887517 Q gi|254780754|r 251 RSWSDRILTAQFS 263 (264) Q Consensus 251 ~~f~~ril~~kF~ 263 (264) ++||++ |++|.. T Consensus 349 ~dff~~-Lr~kL~ 360 (365) T 3pfn_A 349 SDWFES-LAQCLH 360 (365) T ss_dssp HHHHHH-HHHHTT T ss_pred CCHHHH-HHHHCC T ss_conf 888999-998543 No 3 >2i2c_A Probable inorganic polyphosphate/ATP-NAD kinase 1; NADP bound of lmnadk1, transferase; HET: DTA PG4; 1.85A {Listeria monocytogenes egd-e} PDB: 2i1w_A* 2i2a_A* 2i2b_A* 2i29_A* 2i2d_A* 2i2e_A* 2i2f_A* 2q5f_A* Probab=100.00 E-value=0 Score=415.97 Aligned_cols=245 Identities=20% Similarity=0.340 Sum_probs=208.9 Q ss_pred EEEEEEECCCHHHHHHHHHHHHHCCCC----CHHHCCEEEEECCCHHHHHHHHHHHHC--CCEEEEECCCCCCCCCCCCC Q ss_conf 059999559989999999999870788----845577999987954899999997412--87299415343320104458 Q gi|254780754|r 6 QKIHFKASNAKKAQEAYDKFVKIYGNS----TSEEADVIVVLGGDGFMLQSFHQSKEY--DKPIYGMNCGSVGFLMNEYC 79 (264) Q Consensus 6 ~ki~i~~~~~~~a~~~~~~l~~~~~~~----~~~~~Dlii~iGGDGT~L~a~~~~~~~--~~PilGIn~G~lGFL~~~~~ 79 (264) ||+.|+++..++|+++.+.+.+.+.+. +.+++|++|++|||||||+|+|.+... ++||+|||+|+||||+ +++ T Consensus 1 mk~~i~~~~~~~s~~i~~~i~~~l~~~~~~~d~~~~Dlvi~iGGDGT~L~a~~~~~~~~~~~PvlGin~G~lGFL~-~~~ 79 (272) T 2i2c_A 1 MKYMITSKGDEKSDLLRLNMIAGFGEYDMEYDDVEPEIVISIGGDGTFLSAFHQYEERLDEIAFIGIHTGHLGFYA-DWR 79 (272) T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHTTSSCEECSSSCSEEEEEESHHHHHHHHHHTGGGTTTCEEEEEESSSCCSSC-CBC T ss_pred CEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCC-CCC T ss_conf 9799990899899999999999987669722688999999989709999999987631799829998259997486-788 Q ss_pred HHHHHHHHHHCCCCCCCEEEEEEEECC----CCCCCEEEEEEEEEEEEECCCCCCEEEEEEEEEEECCEEEEEEEECCEE Q ss_conf 789998664201243203443454212----4444201577534799726876423678889876678765312103507 Q gi|254780754|r 80 IENLVERLSVAVECTFHPLKMTVFDYD----NSICAENILAINEVSIIRKPGQNQLVQAAKLEVKVDDQVRLPELVCDGL 155 (264) Q Consensus 80 ~~~~~~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~~~AlNEi~i~r~~~~~~~~~~~~~~v~id~~~~~~~~~~DGv 155 (264) ++++.+.++++..+++..+++..+... .+.....++||||++|.+..+. ..+++++||++ +++|+|||| T Consensus 80 ~~~~~~~l~~i~~g~~~i~~r~~L~~~v~~~~g~~~~~~~AlNev~i~~~~~~------~~~~v~i~~~~-~~~~~~DGl 152 (272) T 2i2c_A 80 PAEADKLVKLLAKGEYQKVSYPLLKTTVKYGIGKKEATYLALNESTVKSSGGP------FVVDVVINDIH-FERFRGDGL 152 (272) T ss_dssp GGGHHHHHHHHHTTCCEEEEEEEEEEEEEESSSCCEEEEEESSEEEEEESSSC------EEEEEEETTEE-EEEEEESEE T ss_pred HHHHHHHHHHHHHHHCCCEEHHHHHEEEHHCCCCEEEEHHHCCCEEEECCCCE------EEEEEEECCEE-EEEEEEEEE T ss_conf 88999999999863122000013220112026750430011163344047640------77899988889-999984289 Q ss_pred EEECCCCHHHHHHHCCCEEEEECCCEEEEECCCC-----CCHHHHHHCCCCCCCEEEEEECCCCCCEEEEEECCEE--CC Q ss_conf 9822665044675229817740886058630354-----3301111002788414899974878875899988988--14 Q gi|254780754|r 156 VVSTPIGSTAYNFSALGPILPLESRHLLLTPVSP-----FKPRRWHGAILPNDVMIEIQVLEHKQRPVIATADRLA--IE 228 (264) Q Consensus 156 ivSTptGSTAY~lSaGGpIv~p~~~~~~itpI~p-----~~l~~~rplVl~~~~~I~i~i~~~~~~~~~~~~D~~~--~~ 228 (264) ||||||||||||+||||||++|+++++++||||| |++.. ||+|+|++++|++++... +++.++.||++ .. T Consensus 153 IVSTptGSTAY~~SaGGpIi~p~~~~~~ltpI~p~~~~~~~~~~-rplVl~~~~~I~i~~~~~--~~~~i~~DG~~~~~~ 229 (272) T 2i2c_A 153 CMSTPSGTTAYNKSLGGALMHPSIEAMQLTEMASINNRVYRTIG-SPLVFPKHHVVSLQPVND--KDFQISVDHLSILHR 229 (272) T ss_dssp EEECTGGGGTHHHHTTCCCCCTTSCEEEEEEESCCCSSSCCCCC-SCEEEETTCCEEEEESSC--CCEEEEETTEEEEEC T ss_pred EECCCCCHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCCCCC-CCEEECCCCEEEEEECCC--CCEEEEEECCEEEEC T ss_conf 99988526999975899702898870699864467753331568-969989998899998899--957999958899968 Q ss_pred CCCEEEEEECCCCCEEEEECCCCCHHHHHHHHHCC Q ss_conf 87789999879951899964888899988887517 Q gi|254780754|r 229 PVSRINVTQSSDITMRILSDSHRSWSDRILTAQFS 263 (264) Q Consensus 229 ~~~~i~I~~s~~~~~~li~~~~~~f~~ril~~kF~ 263 (264) ++++|+|+.++ .++++++.++++||+|+ ++||= T Consensus 230 ~~~~i~I~~s~-~~~~l~r~~~~~f~~~l-~~k~l 262 (272) T 2i2c_A 230 DVQEIRYEVSA-KKIHFARFRSFPFWRRV-HDSFI 262 (272) T ss_dssp SEEEEEEEEEE-EEEEEEECSCCCHHHHH-HHHHT T ss_pred CCCEEEEEECC-CEEEEEEECCCCHHHHH-HHHHH T ss_conf 99899999899-78999997999979999-99703 No 4 >1u0t_A Inorganic polyphosphate/ATP-NAD kinase; alpha-beta, beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Mycobacterium tuberculosis} SCOP: e.52.1.1 PDB: 1u0r_A 1y3i_A* 1y3h_A Probab=100.00 E-value=0 Score=418.15 Aligned_cols=250 Identities=25% Similarity=0.404 Sum_probs=208.9 Q ss_pred CCEEEEEEECCC-HHHHHHHHHHHHHCCCC---------------------------------------CHHHCCEEEEE Q ss_conf 650599995599-89999999999870788---------------------------------------84557799998 Q gi|254780754|r 4 NIQKIHFKASNA-KKAQEAYDKFVKIYGNS---------------------------------------TSEEADVIVVL 43 (264) Q Consensus 4 ~~~ki~i~~~~~-~~a~~~~~~l~~~~~~~---------------------------------------~~~~~Dlii~i 43 (264) ..+|+.++.+.. +++.+.++++.+++.+. ..+++|++|++ T Consensus 3 ~~r~v~lv~~~~k~~a~~~a~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dlvivl 82 (307) T 1u0t_A 3 AHRSVLLVVHTGRDEATETARRVEKVLGDNKIALRVLSAEAVDRGSLHLAPDDMRAMGVEIEVVDADQHAADGCELVLVL 82 (307) T ss_dssp --CEEEEEESSSGGGGSHHHHHHHHHHHTTTCEEEEEC-----------------------------------CCCEEEE T ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHHHCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCEEEEE T ss_conf 88899999809998999999999999997899899984313314654467411220375321024653444564589997 Q ss_pred CCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEEEEE---CCCCCCCEEEEEEEEE Q ss_conf 7954899999997412872994153433201044587899986642012432034434542---1244442015775347 Q gi|254780754|r 44 GGDGFMLQSFHQSKEYDKPIYGMNCGSVGFLMNEYCIENLVERLSVAVECTFHPLKMTVFD---YDNSICAENILAINEV 120 (264) Q Consensus 44 GGDGT~L~a~~~~~~~~~PilGIn~G~lGFL~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~AlNEi 120 (264) |||||||+|+|.+.+.++||||||+|++|||+ +++++++.+.+.++..+.+..+++..+. .+++......+||||+ T Consensus 83 GGDGT~L~aa~~~~~~~~PilGIN~G~lGFL~-~~~~~~~~~~l~~~~~g~~~~~~r~~l~~~~~~~~~~~~~~~alNdv 161 (307) T 1u0t_A 83 GGDGTFLRAAELARNASIPVLGVNLGRIGFLA-EAEAEAIDAVLEHVVAQDYRVEDRLTLDVVVRQGGRIVNRGWALNEV 161 (307) T ss_dssp ECHHHHHHHHHHHHHHTCCEEEEECSSCCSSC-SEEGGGHHHHHHHHHHTCCEEEEECCEEEEEEETTEEEEEEEESSEE T ss_pred CCCHHHHHHHHHHCCCCCEEEEECCCCCCEEE-CCCHHHHHHHHHHHHHCCCEEEEEEEEEEEECCCCEEEEECCCCCEE T ss_conf 68778999999746469839997589721730-36505589999998717836987655789981698055301012236 Q ss_pred EEEECCCCCCEEEEEEEEEEECCEEEEEEEECCEEEEECCCCHHHHHHHCCCEEEEECCCEEEEECCCCCCHHHHHHCCC Q ss_conf 99726876423678889876678765312103507982266504467522981774088605863035433011110027 Q gi|254780754|r 121 SIIRKPGQNQLVQAAKLEVKVDDQVRLPELVCDGLVVSTPIGSTAYNFSALGPILPLESRHLLLTPVSPFKPRRWHGAIL 200 (264) Q Consensus 121 ~i~r~~~~~~~~~~~~~~v~id~~~~~~~~~~DGvivSTptGSTAY~lSaGGpIv~p~~~~~~itpI~p~~l~~~rplVl 200 (264) +|.|+... +++.+++++||++ +++|+||||||||||||||||+||||||++|+++++++||||||++.. ||+|+ T Consensus 162 vi~r~~~~----~~~~~~v~i~g~~-~~~~~~DGlIvsTpTGSTAYslSaGGPIv~p~~~~i~vtpi~ph~l~~-rplVl 235 (307) T 1u0t_A 162 SLEKGPRL----GVLGVVVEIDGRP-VSAFGCDGVLVSTPTGSTAYAFSAGGPVLWPDLEAILVVPNNAHALFG-RPMVT 235 (307) T ss_dssp EEECSSSS----SCEEEEEESSSSE-EEEEEESEEEEECTGGGGTHHHHTTCCEECTTCCCEEEEEESCSSSCC-CCEEE T ss_pred EEEECCCC----CEEEEEEEECCEE-EEEEECCEEEECCCCCCCHHHHHCCCCCCCCCCCEEEEEECCCCCCCC-CCEEE T ss_conf 88615766----3579999989999-999960579982745443237767999668322304430046546789-98798 Q ss_pred CCCCEEEEEECCCCCCEEEEEECCE---ECCCCCEEEEEECCCCCEEEEECCCCCHHHHHHHHHCC Q ss_conf 8841489997487887589998898---81487789999879951899964888899988887517 Q gi|254780754|r 201 PNDVMIEIQVLEHKQRPVIATADRL---AIEPVSRINVTQSSDITMRILSDSHRSWSDRILTAQFS 263 (264) Q Consensus 201 ~~~~~I~i~i~~~~~~~~~~~~D~~---~~~~~~~i~I~~s~~~~~~li~~~~~~f~~ril~~kF~ 263 (264) |++++|+|++.... +++.++.||+ ++.++++|.|++++ .++++++..+++||++ |++||. T Consensus 236 ~~~~~i~i~v~~~~-~~~~v~~DG~~~~~l~~gd~I~I~~s~-~~~~li~~~~~~f~~~-l~~Kl~ 298 (307) T 1u0t_A 236 SPEATIAIEIEADG-HDALVFCDGRREMLIPAGSRLEVTRCV-TSVKWARLDSAPFTDR-LVRKFR 298 (307) T ss_dssp CTTCCEEEEECTTS-CCEEEEETTTEEEEECTTCEEEEEECS-SCEEEEECSCCCHHHH-HHHHHT T ss_pred CCCCEEEEEEECCC-CCEEEEEECCCCEEECCCCEEEEEECC-CEEEEEEECCCCHHHH-HHHHCC T ss_conf 89977999991499-878999989925772899699999889-8899999599898999-999759 No 5 >1yt5_A Inorganic polyphosphate/ATP-NAD kinase; domain 1: alpha/beta domain2: beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} Probab=100.00 E-value=0 Score=418.04 Aligned_cols=242 Identities=26% Similarity=0.409 Sum_probs=203.8 Q ss_pred EEEEEEECCCH-HHHH-HHHHHHHHCCC--------CCHHHCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCCCC Q ss_conf 05999955998-9999-99999987078--------88455779999879548999999974128729941534332010 Q gi|254780754|r 6 QKIHFKASNAK-KAQE-AYDKFVKIYGN--------STSEEADVIVVLGGDGFMLQSFHQSKEYDKPIYGMNCGSVGFLM 75 (264) Q Consensus 6 ~ki~i~~~~~~-~a~~-~~~~l~~~~~~--------~~~~~~Dlii~iGGDGT~L~a~~~~~~~~~PilGIn~G~lGFL~ 75 (264) ||+++++++.. ++.+ +.+.+.+.+.. ....++|++|++|||||||+|+|.+.+ ++||||||+|+||||+ T Consensus 1 Mki~iv~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Dlvi~iGGDGT~L~a~~~~~~-~~PilgIn~G~lGFL~ 79 (258) T 1yt5_A 1 MKIAILYREEREKEGEFLKEKISKEHEVIEFGEANAPGRVTADLIVVVGGDGTVLKAAKKAAD-GTPMVGFKAGRLGFLT 79 (258) T ss_dssp CEEEEEECGGGHHHHHHHHHHHTTTSEEEEEEESSSCSCBCCSEEEEEECHHHHHHHHTTBCT-TCEEEEEESSSCCSSC T ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCEEEEECCCHHHHHHHHHHCC-CCCEEEECCCCCCEEE T ss_conf 989999779727889999999876504312313565667887899998882999999998278-9978987169853032 Q ss_pred CCCCHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCEEEEEEEEEEEEECCCCCCEEEEEEEEEEECCEEEEEEEECCEE Q ss_conf 44587899986642012432034434542124444201577534799726876423678889876678765312103507 Q gi|254780754|r 76 NEYCIENLVERLSVAVECTFHPLKMTVFDYDNSICAENILAINEVSIIRKPGQNQLVQAAKLEVKVDDQVRLPELVCDGL 155 (264) Q Consensus 76 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~AlNEi~i~r~~~~~~~~~~~~~~v~id~~~~~~~~~~DGv 155 (264) +++++++.+.++++..+.+..+++....... .....+||||++|.|.... +++++++++||++ +++|+|||+ T Consensus 80 -~~~~~~~~~~l~~i~~g~~~~~~~~~~~~~~--~~~~~~AlNev~i~~~~~~----~~~~~~v~id~~~-~~~~~gDGl 151 (258) T 1yt5_A 80 -SYTLDEIDRFLEDLRNWNFREETRWFIQIES--ELGNHLALNDVTLERDLSG----KMVEIEVEVEHHS-SMWFFADGV 151 (258) T ss_dssp -CBCGGGHHHHHHHHHTTCCEEEEEEEEEEEE--TTEEEEESSEEEEECCTTS----CCEEEEEEETTSC-CEEEEESEE T ss_pred -CCCHHHHHHHHHHHHHCCCCCEEEEEEEECC--CEEEEEECCCCEEECCCCC----CEEEEEEEECCEE-EEEEEEEEE T ss_conf -1564566777788774242020012331023--1111245277189458865----4268999988779-998774799 Q ss_pred EEECCCCHHHHHHHCCCEEEEECCCEEEEECCCCCCHHHHHHCCCCCCCEEEEEECCCCCCEEEEEECCEECCCCCEEEE Q ss_conf 98226650446752298177408860586303543301111002788414899974878875899988988148778999 Q gi|254780754|r 156 VVSTPIGSTAYNFSALGPILPLESRHLLLTPVSPFKPRRWHGAILPNDVMIEIQVLEHKQRPVIATADRLAIEPVSRINV 235 (264) Q Consensus 156 ivSTptGSTAY~lSaGGpIv~p~~~~~~itpI~p~~l~~~rplVl~~~~~I~i~i~~~~~~~~~~~~D~~~~~~~~~i~I 235 (264) ||||||||||||+||||||++|++++|++||||||+++. ||+|+|++++|+++. ++++.++.||++..++++|+| T Consensus 152 ivsTptGSTAY~lSaGGpIv~p~~~~~~ltpI~p~~l~~-rplV~~~~~~i~i~~----~~~~~~~~DG~~~~~~~~i~I 226 (258) T 1yt5_A 152 VISTPTGSTAYSLSIGGPIIFPECEVLEISPIAPQFFLT-RSVVIPSNFKVVVES----QRDINMLVDGVLTGKTKRIEV 226 (258) T ss_dssp EEECTGGGGTTTTTTTCCCCCTTCCEEEEEEESCSTTCC-CCEEEETTSCEEEEE----EEEEEEEETTEEEEEEEEEEE T ss_pred EECCCCCHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCC-CCCCCCCCCEEEECC----CCCEEEEEEEEECCCCCEEEE T ss_conf 980647645787507999648986727998615542457-996068975899846----998699995268489969999 Q ss_pred EECCCCCEEEEECCCCCHHHHHHHHHCC Q ss_conf 9879951899964888899988887517 Q gi|254780754|r 236 TQSSDITMRILSDSHRSWSDRILTAQFS 263 (264) Q Consensus 236 ~~s~~~~~~li~~~~~~f~~ril~~kF~ 263 (264) ++|+ .+++++++++++||++ +++|+. T Consensus 227 ~~s~-~~~~li~~~~~~f~~~-lr~KL~ 252 (258) T 1yt5_A 227 KKSR-RYVRILRPPEYDYVTV-IRDKLG 252 (258) T ss_dssp EEEE-EEEEEEECTTCCHHHH-HHHHHC T ss_pred EECC-CEEEEEEECCCCHHHH-HHHHCC T ss_conf 9899-8899999499998899-875568 No 6 >1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A* Probab=100.00 E-value=0 Score=380.09 Aligned_cols=238 Identities=25% Similarity=0.425 Sum_probs=190.6 Q ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHC------C--CCCHHHCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCCC Q ss_conf 765059999559989999999999870------7--88845577999987954899999997412872994153433201 Q gi|254780754|r 3 RNIQKIHFKASNAKKAQEAYDKFVKIY------G--NSTSEEADVIVVLGGDGFMLQSFHQSKEYDKPIYGMNCGSVGFL 74 (264) Q Consensus 3 ~~~~ki~i~~~~~~~a~~~~~~l~~~~------~--~~~~~~~Dlii~iGGDGT~L~a~~~~~~~~~PilGIn~G~lGFL 74 (264) .+.||..+++.+...++++.+.+.+.- + .+..+++|+||++|||||||+|+|.+. ..+||+|||+|++||| T Consensus 27 ~~~~r~~~v~~~~~~~kri~~~lk~~~~~~~~~~~~~~~~e~~DlVI~iGGDGTlL~a~~~~~-~~~PilGIN~G~lGFL 105 (278) T 1z0s_A 27 GGGMRAAVVYKTDGHVKRIEEALKRLEVEVELFNQPSEELENFDFIVSVGGDGTILRILQKLK-RCPPIFGINTGRVGLL 105 (278) T ss_dssp ---CEEEEEESSSTTHHHHHHHHHHTTCEEEEESSCCGGGGGSSEEEEEECHHHHHHHHTTCS-SCCCEEEEECSSSCTT T ss_pred CCEEEEEEEECCCHHHHHHHHHHHHCCCEEEECCCCHHHCCCCCEEEEECCCHHHHHHHHHHC-CCCCEEEECCCCCCCC T ss_conf 101589999847648999999987427558984798112127999999878699999999827-9986999848997317 Q ss_pred CCCCCHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCEEEEEEEEEEEEECCCCCCEEEEEEEEEEECCEEEEEEEECCE Q ss_conf 04458789998664201243203443454212444420157753479972687642367888987667876531210350 Q gi|254780754|r 75 MNEYCIENLVERLSVAVECTFHPLKMTVFDYDNSICAENILAINEVSIIRKPGQNQLVQAAKLEVKVDDQVRLPELVCDG 154 (264) Q Consensus 75 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~AlNEi~i~r~~~~~~~~~~~~~~v~id~~~~~~~~~~DG 154 (264) ++ ++++++.+.|+++.. .+..+++..+.. ...+..+||||++|.|..+. +++++++++|++. +++++||| T Consensus 106 ~~-~~~~~~~~~l~~~~~-~~~~~~~~~l~~---~~~~~~~ALNEv~I~~~~~~----~~~~~~i~id~~~-~~~~~gDG 175 (278) T 1z0s_A 106 TH-ASPENFEVELKKAVE-KFEVERFPRVSC---SAMPDVLALNEIAVLSRKPA----KMIDVALRVDGVE-VDRIRCDG 175 (278) T ss_dssp CC-BBTTBCHHHHHHHHH-HCCEEEECCEEE---TTEEEEEESSEEEEEESSTT----CCEEEEEEETTEE-EEEEEESE T ss_pred CC-CCHHHHHHHHHHHHH-HHHHHEEEEECC---CCCCCCCCCCCCEEEECCCC----EEEEEEEEECCEE-EEEEECCE T ss_conf 27-887789999999886-310320220002---33221001363079851773----2899999879998-57787888 Q ss_pred EEEECCCCHHHHHHHCCCEEEEECCCEEEEECCCCCCHHHHHHCCCCCCCEEEEEECCCCCCEEEEEECCEE-CCCCCEE Q ss_conf 798226650446752298177408860586303543301111002788414899974878875899988988-1487789 Q gi|254780754|r 155 LVVSTPIGSTAYNFSALGPILPLESRHLLLTPVSPFKPRRWHGAILPNDVMIEIQVLEHKQRPVIATADRLA-IEPVSRI 233 (264) Q Consensus 155 vivSTptGSTAY~lSaGGpIv~p~~~~~~itpI~p~~l~~~rplVl~~~~~I~i~i~~~~~~~~~~~~D~~~-~~~~~~i 233 (264) |||||||||||||+||||||++|++++|++||||||+++ |||+|+|++++|+++.. .+.++.||++ +..+++| T Consensus 176 vIVSTptGSTAY~lSaGGpIv~p~~~~i~itPIaP~~l~-~rplVl~~~~~I~i~~~-----~~~v~~DG~~~i~~~~~I 249 (278) T 1z0s_A 176 FIVATQIGSTGYAFSAGGPVVEPYLECFILIPIAPFRFG-WKPYVVSMERKIEVIAE-----KAIVVADGQKSVDFDGEI 249 (278) T ss_dssp EEEEESGGGGTHHHHTTCCEECTTSCCEEEEEESCCSSB-CCCEEECTTSCEEEEEE-----EEEEEETTTEEEEEEEEE T ss_pred EEEECCCCCHHHHHHCCCCEECCCCCCEEEEECCCCCCC-CCCEEECCCCEEEEEEC-----CEEEEECCCEEECCCCEE T ss_conf 999278751888853899646688873587523666668-98879789988999907-----529997797123599989 Q ss_pred EEEECCCCCEEEEECCCCCHHHHHHHHH Q ss_conf 9998799518999648888999888875 Q gi|254780754|r 234 NVTQSSDITMRILSDSHRSWSDRILTAQ 261 (264) Q Consensus 234 ~I~~s~~~~~~li~~~~~~f~~ril~~k 261 (264) .|++|+ .++++++. .+|++. +.+| T Consensus 250 ~I~~s~-~~~~~~~~--~~~f~~-l~~K 273 (278) T 1z0s_A 250 TIEKSE-FPAVFFKN--EKRFRN-LFGK 273 (278) T ss_dssp EEEECS-CCEEEECC--TTHHHH-HHHH T ss_pred EEEECC-CCEEEECC--CHHHHH-HHHH T ss_conf 999899-72699356--658999-9997 No 7 >2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP complex, transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A Probab=97.96 E-value=0.00059 Score=43.73 Aligned_cols=230 Identities=12% Similarity=0.084 Sum_probs=99.2 Q ss_pred EEEEEEECCCH---HHHHHHHHHHHHCCC----------------------CCHHHCCEEEEECCCHHHHHHHHHHHHC- Q ss_conf 05999955998---999999999987078----------------------8845577999987954899999997412- Q gi|254780754|r 6 QKIHFKASNAK---KAQEAYDKFVKIYGN----------------------STSEEADVIVVLGGDGFMLQSFHQSKEY- 59 (264) Q Consensus 6 ~ki~i~~~~~~---~a~~~~~~l~~~~~~----------------------~~~~~~Dlii~iGGDGT~L~a~~~~~~~- 59 (264) +|+.++.|+.- ++++..+++.+.+.. ...+++|+||++|||||+=.++..+... T Consensus 25 kr~~vI~NP~SG~g~~~~~~~~i~~~l~~~g~~~~i~~T~~~g~a~~~a~~~~~~~~d~IVv~GGDGTv~ev~~gl~~~~ 104 (337) T 2qv7_A 25 KRARIIYNPTSGKEQFKRELPDALIKLEKAGYETSAYATEKIGDATLEAERAMHENYDVLIAAGGDGTLNEVVNGIAEKP 104 (337) T ss_dssp EEEEEEECTTSTTSCHHHHHHHHHHHHHHTTEEEEEEECCSTTHHHHHHHHHTTTTCSEEEEEECHHHHHHHHHHHTTCS T ss_pred CEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHC T ss_conf 35999999888987579999999999998799699998289226999999987779999999906569999999998616 Q ss_pred -CCEEEEECCCCCCCCCCCCC-HHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCE-EEEE-EEEEEEE------------ Q ss_conf -87299415343320104458-789998664201243203443454212444420-1577-5347997------------ Q gi|254780754|r 60 -DKPIYGMNCGSVGFLMNEYC-IENLVERLSVAVECTFHPLKMTVFDYDNSICAE-NILA-INEVSII------------ 123 (264) Q Consensus 60 -~~PilGIn~G~lGFL~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~A-lNEi~i~------------ 123 (264) .+|+.=|-+|+-.=++..+. +.++.+++.....+..... .+...++..... -.+. .-+++.. T Consensus 105 ~~~plgiiP~GTgN~~Ar~lgi~~~~~~a~~~i~~g~~~~i--d~~~v~~~~fl~~~~~G~~a~~~~~~~~~~~~~~g~l 182 (337) T 2qv7_A 105 NRPKLGVIPMGTVNDFGRALHIPNDIMGALDVIIEGHSTKV--DIGKMNNRYFINLAAGGQLTQVSYETPSKLKSIVGPF 182 (337) T ss_dssp SCCEEEEEECSSCCHHHHHTTCCSSHHHHHHHHHHTCEEEE--EEEEETTEEESSEEEEECBCC-------------CGG T ss_pred CCCEEEEECCCCCCCEEEECCCCCCHHHHHHHHHCCCCEEE--EEEEECCEEEEEEEEEHHHHHHHHHHHHHHHCCCCCH T ss_conf 79618995499998131604678766888887743870898--7878888999999987023587888887633036627 Q ss_pred ----ECCCCCCEEEEEEEEEEECCEEEEEEEECCEEEEECCCCHHHHHHHCCCEEEEEC-------CCEEEEECCCCCCH Q ss_conf ----2687642367888987667876531210350798226650446752298177408-------86058630354330 Q gi|254780754|r 124 ----RKPGQNQLVQAAKLEVKVDDQVRLPELVCDGLVVSTPIGSTAYNFSALGPILPLE-------SRHLLLTPVSPFKP 192 (264) Q Consensus 124 ----r~~~~~~~~~~~~~~v~id~~~~~~~~~~DGvivSTptGSTAY~lSaGGpIv~p~-------~~~~~itpI~p~~l 192 (264) ..-......+..++.+.+|++. ++. .+--++|+. ++. -+||.-+.|. ++++++.+.....+ T Consensus 183 ~Y~~~~~~~l~~~~~~~~~v~~dg~~-~~~-~~~~~~v~n--~~~----~ggg~~~~P~a~~~DG~ldv~~~~~~~~~~l 254 (337) T 2qv7_A 183 AYYIKGFEMLPQMKAVDLRIEYDGNV-FQG-EALLFFLGL--TNS----MAGFEKLVPDAKLDDGYFTLIIVEKSNLAEL 254 (337) T ss_dssp GSCCCTTTTGGGBCCEEEEEEETTEE-EEE-EEEEEEEES--SCC----CSSCSCSSTTCCSSSSCEEEEEEECCCHHHH T ss_pred HHHHHHHHHHHHCCCCCEEEEECCEE-EEE-EEEEEEEEC--CCC----CCCCCCCCCCCCCCCCCEEEEEECCCCHHHH T ss_conf 89999999975047864599989977-897-766312541--652----4778735876566788328999658999999 Q ss_pred HH-----HHH-------CCCCCCCEEEEEECCCCCCEEEEEECCEECCCCCEEEEEECCCCCEEEEECCCC Q ss_conf 11-----110-------027884148999748788758999889881487789999879951899964888 Q gi|254780754|r 193 RR-----WHG-------AILPNDVMIEIQVLEHKQRPVIATADRLAIEPVSRINVTQSSDITMRILSDSHR 251 (264) Q Consensus 193 ~~-----~rp-------lVl~~~~~I~i~i~~~~~~~~~~~~D~~~~~~~~~i~I~~s~~~~~~li~~~~~ 251 (264) .. ++. +..-.-.+++|+ . ..+..+..||..+.. ..++|+.-++ .++++-+++. T Consensus 255 ~~~~~~~~~G~~~~~~~v~~~~~~~i~I~--~--~~~~~~~iDGE~~~~-~p~~i~v~p~-al~v~~P~~~ 319 (337) T 2qv7_A 255 GHIMTLASRGEHTKHPKVIYEKAKAINIS--S--FTDLQLNVDGEYGGK-LPANFLNLER-HIDVFAPNDI 319 (337) T ss_dssp HHHHHHHTTTCGGGSTTEEEEEESEEEEE--C--SSCCEEEETTEEEEE-SCEEEEEEEE-EEEEECCTTS T ss_pred HHHHHHHHCCCCCCCCCEEEEEECEEEEE--E--CCCCEEEECCCCCCC-CCEEEEEECC-EEEEECCCCC T ss_conf 99999986699778998899991789999--6--999979924898999-6669999989-6799888987 No 8 >2bon_A Lipid kinase; DAG kinase, ATP-binding, transferase; 1.9A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A Probab=97.24 E-value=0.011 Score=35.61 Aligned_cols=198 Identities=14% Similarity=0.138 Sum_probs=91.0 Q ss_pred HHCCEEEEECCCHHHHHHHHHHHHC---CCEEEEE-CCCCCCCCCCCCC-HHHHHHHHHHCCCCCCCEEEEEEEECCCCC Q ss_conf 5577999987954899999997412---8729941-5343320104458-789998664201243203443454212444 Q gi|254780754|r 35 EEADVIVVLGGDGFMLQSFHQSKEY---DKPIYGM-NCGSVGFLMNEYC-IENLVERLSVAVECTFHPLKMTVFDYDNSI 109 (264) Q Consensus 35 ~~~Dlii~iGGDGT~L~a~~~~~~~---~~PilGI-n~G~lGFL~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 109 (264) +.+|.||+.|||||+=.++.-.... +.|.+|| -+|+-.-++-.+. +.+..++++.+..+...+. .+...++. T Consensus 81 ~g~d~IV~~GGDGTv~evv~gL~~~~~~~~p~lgiiP~GT~NdfAr~lgip~d~~~a~~~i~~g~~~~i--Dvg~vn~~- 157 (332) T 2bon_A 81 FGVATVIAGGGDGTINEVSTALIQCEGDDIPALGILPLGTANDFATSVGIPEALDKALKLAIAGDAIAI--DMAQVNKQ- 157 (332) T ss_dssp HTCSEEEEEESHHHHHHHHHHHHHCCSSCCCEEEEEECSSSCHHHHHTTCCSSHHHHHHHHHHSEEEEE--EEEEETTS- T ss_pred CCCCEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHCCCCCCHHHHHHHHHCCCEEEE--EEEEEECC- T ss_conf 798999999883699999999986377788659997898740316853999997999999853975998--44576311- Q ss_pred CCEEEEEEEEEEE-------EEC-----CC------------CCCEEEEEEEEEEECCEEEEEEEECCEEEEECCCCHHH Q ss_conf 4201577534799-------726-----87------------64236788898766787653121035079822665044 Q gi|254780754|r 110 CAENILAINEVSI-------IRK-----PG------------QNQLVQAAKLEVKVDDQVRLPELVCDGLVVSTPIGSTA 165 (264) Q Consensus 110 ~~~~~~AlNEi~i-------~r~-----~~------------~~~~~~~~~~~v~id~~~~~~~~~~DGvivSTptGSTA 165 (264) .+.+|-+.+ .+. .. .....+..++++.+|+.. + .++.++++-..++. T Consensus 158 ----~~f~n~a~~G~~a~v~~~~~~~~k~~~G~~~y~~~~l~~l~~~~~~~~~i~~d~~~-~---~~~~~~v~v~N~~~- 228 (332) T 2bon_A 158 ----TCFINMATGGFGTRITTETPEKLKAALGSVSYIIHGLMRMDTLQPDRCEIRGENFH-W---QGDALVIGIGNGRQ- 228 (332) T ss_dssp ----CEESSEEEEEEEEEC----------CCHHHHHHHHHTSCEEEEECEEEEEEETTEE-E---EEEESEEEEESSSC- T ss_pred ----CEEEEEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCEEEEEECCEE-E---EEEEEEEEEECCCC- T ss_conf ----00788850126899999998875203562367788999874057723899943448-9---72057999946666- Q ss_pred HHHHCCCEEEEEC-------CCEEEEECCCCCCH--HHHH-----HCCC-CCCCEEEEEECCCCCCEEEEEECCEECCCC Q ss_conf 6752298177408-------86058630354330--1111-----0027-884148999748788758999889881487 Q gi|254780754|r 166 YNFSALGPILPLE-------SRHLLLTPVSPFKP--RRWH-----GAIL-PNDVMIEIQVLEHKQRPVIATADRLAIEPV 230 (264) Q Consensus 166 Y~lSaGGpIv~p~-------~~~~~itpI~p~~l--~~~r-----plVl-~~~~~I~i~i~~~~~~~~~~~~D~~~~~~~ 230 (264) ..||..+.|+ ++++++.+..-... ..++ |-|. -....++|+. .++..+..||..+. . T Consensus 229 ---~ggg~~i~P~a~~~DG~Ldv~i~~~~~~l~~l~~~l~~~~~~~~v~~~~~~~l~I~~----~~~~~~~iDGE~~~-~ 300 (332) T 2bon_A 229 ---AGGGQQLCPNALINDGLLQLRIFTGDEILPALVSTLKSDEDNPNIIEGASSWFDIQA----PHDITFNLDGEPLS-G 300 (332) T ss_dssp ---BTTTBCSCTTCCTTSSCEEEEEECCSSCCHHHHHHHHTTCCCTTEEEEEESEEEEEE----EEEEEEEETTEEEE-E T ss_pred ---CCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHCCCCCCCCEEEEEEEEEEEEE----CCCCEEEECCCCCC-C T ss_conf ---678877688887889828999988676999999986366899988999968999996----89897995689789-9 Q ss_pred CEEEEEECCCCCEEEEECCCCCH Q ss_conf 78999987995189996488889 Q gi|254780754|r 231 SRINVTQSSDITMRILSDSHRSW 253 (264) Q Consensus 231 ~~i~I~~s~~~~~~li~~~~~~f 253 (264) ..++++.-++ .++++-+++..+ T Consensus 301 ~p~~i~v~p~-aL~vlvP~~~~~ 322 (332) T 2bon_A 301 QNFHIEILPA-ALRCRLPPDCPL 322 (332) T ss_dssp EEEEEEEEEE-EEEEEECTTCTT T ss_pred CCEEEEEECC-EEEEECCCCCCC T ss_conf 7569999999-999986899843 No 9 >1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} SCOP: c.87.1.3 Probab=96.48 E-value=0.031 Score=32.88 Aligned_cols=73 Identities=15% Similarity=0.149 Sum_probs=52.6 Q ss_pred CCCCCEEEEEEECCCHHHHH---HHHHHHHH--C---------------------CCC------------C--------- Q ss_conf 98765059999559989999---99999987--0---------------------788------------8--------- Q gi|254780754|r 1 MDRNIQKIHFKASNAKKAQE---AYDKFVKI--Y---------------------GNS------------T--------- 33 (264) Q Consensus 1 m~~~~~ki~i~~~~~~~a~~---~~~~l~~~--~---------------------~~~------------~--------- 33 (264) |+.+||||.++.-..++..+ +.+.+.+. + +-. . T Consensus 1 ~~~~MkkI~~v~GtR~e~~k~~pl~~~l~~~~~~~~~li~tG~H~~~~~~~~~~~gi~~d~~~~~~~~~~~~~~~~~~~~ 80 (376) T 1v4v_A 1 MEGGMKRVVLAFGTRPEATKMAPVYLALRGIPGLKPLVLLTGQHREQLRQALSLFGIQEDRNLDVMQERQALPDLAARIL 80 (376) T ss_dssp ---CCEEEEEEECSHHHHHHHHHHHHHHHTSTTEEEEEEECSSCHHHHHHHHHTTTCCCSEECCCCSSCCCHHHHHHHHH T ss_pred CCCCCCEEEEEEEHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHCCCHHCCCCCCCCCCCCCCCCCHHHHHHHHH T ss_conf 99999889999970184999999999997289998899982688566747113409976656788888888999999999 Q ss_pred --------HHHCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCC Q ss_conf --------4557799998795489999999741287299415343320 Q gi|254780754|r 34 --------SEEADVIVVLGGDGFMLQSFHQSKEYDKPIYGMNCGSVGF 73 (264) Q Consensus 34 --------~~~~Dlii~iGGDGT~L~a~~~~~~~~~PilGIn~G~lGF 73 (264) -.+||+|+++|...+.|-++-.+...++|+.-|..|-+.+ T Consensus 81 ~~~~~il~~~kpD~Vlv~GDr~~~la~a~aa~~~~ipi~HiegG~rsg 128 (376) T 1v4v_A 81 PQAARALKEMGADYVLVHGDTLTTFAVAWAAFLEGIPVGHVEAGLRSG 128 (376) T ss_dssp HHHHHHHHHTTCSEEEEESSCHHHHHHHHHHHHTTCCEEEETCCCCCS T ss_pred HHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEECCCCCC T ss_conf 999999740599989996897079999999986297479866176666 No 10 >3opy_A 6-phosphofructo-1-kinase alpha-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris} Probab=95.36 E-value=0.077 Score=30.37 Aligned_cols=53 Identities=17% Similarity=0.368 Sum_probs=35.5 Q ss_pred HCCEEEEECCCHHHHHHHHHHHH------CCCEEEEECC-------C---CCCCCCCCCCHHHHHHHHHHCC Q ss_conf 57799998795489999999741------2872994153-------4---3320104458789998664201 Q gi|254780754|r 36 EADVIVVLGGDGFMLQSFHQSKE------YDKPIYGMNC-------G---SVGFLMNEYCIENLVERLSVAV 91 (264) Q Consensus 36 ~~Dlii~iGGDGT~L~a~~~~~~------~~~PilGIn~-------G---~lGFL~~~~~~~~~~~~l~~~~ 91 (264) +.|.+|+|||||++-.+...... ..+|++||=. | ++||-+ ....+.+.++++. T Consensus 688 ~Id~LivIGG~gS~~~a~~L~~~~~~y~~~~IpvVgIPkTIDNDv~gTD~SiGfdT---Aln~i~~~id~Ir 756 (989) T 3opy_A 688 KFDGLIIIGGFEAFTALYELDAARAQYPIFNIPMCCLPATVSNNVPGTEYSLGSDT---CLNTLSGYCDAVK 756 (989) T ss_dssp TCSEEEEEESHHHHHHHHHHHHHTTTCGGGCSCEEEEEBCSSCCCTTCSCCBTHHH---HHHHHHHHHHHHH T ss_pred CCCEEEEECCHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCHHH---HHHHHHHHHHHHH T ss_conf 98989997886899999999985533347898779824674468987757765777---9999999999998 No 11 >3pfk_A Phosphofructokinase; transferase(phosphotransferase); 2.40A {Geobacillus stearothermophilus} SCOP: c.89.1.1 PDB: 4pfk_A* 6pfk_A 1mto_A* Probab=95.12 E-value=0.042 Score=31.99 Aligned_cols=40 Identities=30% Similarity=0.444 Sum_probs=31.6 Q ss_pred HHCCEEEEECCCHHHHHHHHHHHHCCCEEEEECC-------C---CCCCCC Q ss_conf 5577999987954899999997412872994153-------4---332010 Q gi|254780754|r 35 EEADVIVVLGGDGFMLQSFHQSKEYDKPIYGMNC-------G---SVGFLM 75 (264) Q Consensus 35 ~~~Dlii~iGGDGT~L~a~~~~~~~~~PilGIn~-------G---~lGFL~ 75 (264) .+.|.+++|||||||-.+.+ +....+|++||-. | +.||-+ T Consensus 92 ~~Id~li~iGG~~s~~~a~~-L~~~~~~vigiPkTIDNDl~~td~t~Gf~T 141 (319) T 3pfk_A 92 HGIQGLVVIGGDGSYQGAKK-LTEHGFPCVGVPGTIDNDIPGTDFTIGFDT 141 (319) T ss_dssp HTCCEEEEEECHHHHHHHHH-HHHTTCCEEEEEBCSSCCCTTCSSCBTHHH T ss_pred HCCCEEEEECCHHHHHHHHH-HHHCCCCEEEEECCCCCCCCCCCCCCCHHH T ss_conf 15775999888589999999-970698467330012688767556776889 No 12 >1zxx_A 6-phosphofructokinase; allosteric regulation, lactobacillus bulgaricus, transferase; 1.85A {Lactobacillus delbrueckii subsp} Probab=94.99 E-value=0.046 Score=31.75 Aligned_cols=52 Identities=17% Similarity=0.309 Sum_probs=35.3 Q ss_pred HHCCEEEEECCCHHHHHHHHHHHHCCCEEEEECC----------CCCCCCCCCCCHHHHHHHHHHC Q ss_conf 5577999987954899999997412872994153----------4332010445878999866420 Q gi|254780754|r 35 EEADVIVVLGGDGFMLQSFHQSKEYDKPIYGMNC----------GSVGFLMNEYCIENLVERLSVA 90 (264) Q Consensus 35 ~~~Dlii~iGGDGT~L~a~~~~~~~~~PilGIn~----------G~lGFL~~~~~~~~~~~~l~~~ 90 (264) .+.|.+++||||||+-.|.+ +....+|++||-- =+.||-+. .+...+.++.+ T Consensus 92 ~~Id~Li~iGGdgS~~~a~~-l~~~~i~vigIPkTIDNDl~~td~t~Gf~TA---~~~~~~~i~~l 153 (319) T 1zxx_A 92 HGIDAVVVIGGDGSYHGALQ-LTRHGFNSIGLPGTIDNDIPYTDATIGYDTA---CMTAMDAIDKI 153 (319) T ss_dssp TTCCEEEEEECHHHHHHHHH-HHHTTCCEEEEEEETTCCCTTCSCCEEHHHH---HHHHHHHHHHH T ss_pred CCCCEEEEECCCCHHHHHHH-HHHCCCCEEEEEEECCCCCCCCCCCCCHHHH---HHHHHHHHHHH T ss_conf 69989999379617999999-7753685677620016898884008689999---99999999999 No 13 >2hig_A 6-phospho-1-fructokinase; transferase; 2.40A {Trypanosoma brucei} PDB: 3f5m_A* Probab=94.95 E-value=0.043 Score=31.94 Aligned_cols=41 Identities=24% Similarity=0.436 Sum_probs=30.6 Q ss_pred HHCCEEEEECCCHHHHHHHHHHHH-----CCCEEEEECC-------C---CCCCCC Q ss_conf 557799998795489999999741-----2872994153-------4---332010 Q gi|254780754|r 35 EEADVIVVLGGDGFMLQSFHQSKE-----YDKPIYGMNC-------G---SVGFLM 75 (264) Q Consensus 35 ~~~Dlii~iGGDGT~L~a~~~~~~-----~~~PilGIn~-------G---~lGFL~ 75 (264) .+.|.+|+||||||+-.|...... .++||+||-- | +.||-+ T Consensus 188 ~~Id~LivIGGdgS~~~A~~Lae~~~~~~~~i~VIGIPKTIDNDl~gtD~TiGFdT 243 (487) T 2hig_A 188 LGVNILFTVGGDGTQRGALVISQEAKRRGVDISVFGVPKTIDNDLSFSHRTFGFQT 243 (487) T ss_dssp HTCSEEEEEECHHHHHHHHHHHHHHHHHTCCCEEEEEECCTTSSCCCSSCCTTHHH T ss_pred HCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCHHH T ss_conf 49987999567478999999999988628983299840255688776023563557 No 14 >1pfk_A Phosphofructokinase; transferase(phosphotransferase); HET: FBP ADP; 2.40A {Escherichia coli} SCOP: c.89.1.1 PDB: 2pfk_A Probab=94.65 E-value=0.064 Score=30.88 Aligned_cols=51 Identities=29% Similarity=0.602 Sum_probs=35.4 Q ss_pred HHCCEEEEECCCHHHHHHHHHHHHCCCEEEEECC-------C---CCCCCCCCCCHHHHHHHHHH Q ss_conf 5577999987954899999997412872994153-------4---33201044587899986642 Q gi|254780754|r 35 EEADVIVVLGGDGFMLQSFHQSKEYDKPIYGMNC-------G---SVGFLMNEYCIENLVERLSV 89 (264) Q Consensus 35 ~~~Dlii~iGGDGT~L~a~~~~~~~~~PilGIn~-------G---~lGFL~~~~~~~~~~~~l~~ 89 (264) .+.|.+++||||||+-.|.+ ..+..+|++||=. | +.||-+. .+.+.+.++. T Consensus 93 ~~Id~li~iGGdgs~~~a~~-l~e~~~~vigIPkTIDNDl~~td~s~Gf~TA---~~~~~~~i~~ 153 (320) T 1pfk_A 93 RGIDALVVIGGDGSYMGAMR-LTEMGFPCIGLPGTIDNDIKGTDYTIGFFTA---LSTVVEAIDR 153 (320) T ss_dssp TTCCEEEEEECHHHHHHHHH-HHHTTCCEEEEEBCTTCCCTTCSCCBTHHHH---HHHHHHHHHH T ss_pred CCCCEEEEECCCHHHHHHHH-HHHCCCCEEEEEEEECCCCCCCCCCCCHHHH---HHHHHHHHHH T ss_conf 69988999369368999999-7643674331211222799885338837888---9999999999 No 15 >3hno_A Pyrophosphate-dependent phosphofructokinase; structural genomics, PSI-2, protein structure initiative; 2.00A {Nitrosospira multiformis atcc 25196} PDB: 3k2q_A Probab=94.46 E-value=0.066 Score=30.77 Aligned_cols=41 Identities=15% Similarity=0.101 Sum_probs=30.0 Q ss_pred HHCCEEEEECCCHHHHHHHHHHH-----HCCCEEEEECC----------CCCCCCC Q ss_conf 55779999879548999999974-----12872994153----------4332010 Q gi|254780754|r 35 EEADVIVVLGGDGFMLQSFHQSK-----EYDKPIYGMNC----------GSVGFLM 75 (264) Q Consensus 35 ~~~Dlii~iGGDGT~L~a~~~~~-----~~~~PilGIn~----------G~lGFL~ 75 (264) .+.|.+|+||||||+-.|.+... ..++|++||=- -+.||-+ T Consensus 103 ~~Id~Li~IGGdgS~~~a~~L~~~~~~~~~~i~vIgIPKTIDNDl~~tD~t~GF~T 158 (419) T 3hno_A 103 HDIGYFFYNGGGDSADTCLKVSQLSGTLGYPIQAIHVPKTVDNDLPITDCCPGFGS 158 (419) T ss_dssp TTEEEEEEEESHHHHHHHHHHHHHHHHTTCCCEEEEEECCTTCCCSSSSSCTTHHH T ss_pred CCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEECCCCHHH T ss_conf 09987999758078999999999999708994189612432578776332764788 No 16 >3opy_B 6-phosphofructo-1-kinase beta-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris} Probab=93.53 E-value=0.13 Score=28.87 Aligned_cols=52 Identities=15% Similarity=0.206 Sum_probs=29.3 Q ss_pred HCCEEEEECCCHHHHHHHHHHHH------CCCEEEEECC----------CCCCCCCCCCCHHHHHHHHHHC Q ss_conf 57799998795489999999741------2872994153----------4332010445878999866420 Q gi|254780754|r 36 EADVIVVLGGDGFMLQSFHQSKE------YDKPIYGMNC----------GSVGFLMNEYCIENLVERLSVA 90 (264) Q Consensus 36 ~~Dlii~iGGDGT~L~a~~~~~~------~~~PilGIn~----------G~lGFL~~~~~~~~~~~~l~~~ 90 (264) +.|.+++|||||||-.+.+.... .++|++||-. -++||-+. .+.+.+.++.+ T Consensus 662 ~Id~LivIGGdgS~~~a~~L~~~~~~~~~~~I~vVgIPkTIDNDl~gtD~SiGfdTA---~n~i~~aid~i 729 (941) T 3opy_B 662 GFDGLILVGGFEAFISLHQLERARINYPSLRIPLVLIPATISNNVPGTEYSLGSDTC---LNSFMEYCDVI 729 (941) T ss_dssp TCSEEEEEESHHHHHHHHHHHHGGGTCGGGCSCEEEEEBCSSCCCTTCSCCBTHHHH---HHHHHHHHHHH T ss_pred CCCEEEEECCHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCHHHH---HHHHHHHHHHH T ss_conf 999799916758999999999977542467973797114446898776778768889---99999999999 No 17 >3opy_B 6-phosphofructo-1-kinase beta-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris} Probab=93.29 E-value=0.21 Score=27.61 Aligned_cols=54 Identities=17% Similarity=0.289 Sum_probs=35.4 Q ss_pred HHCCEEEEECCCHHHHHHHHHHH----------------------HCCCEEEEECC----------CCCCCCCCCCCHHH Q ss_conf 55779999879548999999974----------------------12872994153----------43320104458789 Q gi|254780754|r 35 EEADVIVVLGGDGFMLQSFHQSK----------------------EYDKPIYGMNC----------GSVGFLMNEYCIEN 82 (264) Q Consensus 35 ~~~Dlii~iGGDGT~L~a~~~~~----------------------~~~~PilGIn~----------G~lGFL~~~~~~~~ 82 (264) .+.|.+|+||||||+-.|..... ..+++|+||=- -+.||.+. .+. T Consensus 275 ~~Id~LvvIGGDGSl~gA~~L~~e~~~~~~el~~~~~i~~~~~~~~~~i~VvGIPkTIDNDl~~tD~TiGf~TA---~~~ 351 (941) T 3opy_B 275 MGIDALIVCGGDGSLTGADRFRSEWPSLIEELLQTEQISQQQFNTHQNLNICGAVGSIDNDMSSTDATIGAFSS---LDR 351 (941) T ss_dssp HTCCEEEEEECHHHHHHHHHHHHTCCCCCCC--------CHHHHHTCSCEEEEEEEESSCCCSSCSSCEEHHHH---HHH T ss_pred CCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCEECCCCCCCCCCCHHHH---HHH T ss_conf 69998999898158999999987634433443222246688875279955999646703689887578887999---999 Q ss_pred HHHHHHHCC Q ss_conf 998664201 Q gi|254780754|r 83 LVERLSVAV 91 (264) Q Consensus 83 ~~~~l~~~~ 91 (264) +.+.++.+. T Consensus 352 i~~aid~i~ 360 (941) T 3opy_B 352 ICRAIDYID 360 (941) T ss_dssp HHHHHHHHH T ss_pred HHHHHHHHH T ss_conf 999999999 No 18 >3opy_A 6-phosphofructo-1-kinase alpha-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris} Probab=93.28 E-value=0.13 Score=28.93 Aligned_cols=56 Identities=21% Similarity=0.330 Sum_probs=35.6 Q ss_pred HHCCEEEEECCCHHHHHHHHHH-----------------------HHCCCEEEEEC---------CC-CCCCCCCCCCHH Q ss_conf 5577999987954899999997-----------------------41287299415---------34-332010445878 Q gi|254780754|r 35 EEADVIVVLGGDGFMLQSFHQS-----------------------KEYDKPIYGMN---------CG-SVGFLMNEYCIE 81 (264) Q Consensus 35 ~~~Dlii~iGGDGT~L~a~~~~-----------------------~~~~~PilGIn---------~G-~lGFL~~~~~~~ 81 (264) .+.|.+|+||||||+-.|. .+ ...+++|+||= +. +.||-+. .+ T Consensus 303 ~gId~LivIGGDGSltgA~-~l~~e~~~ll~el~~~~~It~e~~~~~~~i~VVGIPkTIDNDi~gTD~TiGfdTA---l~ 378 (989) T 3opy_A 303 NGIDALVVCGGDGSLTGAD-LFRKEWPELIKELLGEDKITKEQYETHRNLTIVGLVGSIDNDMCGTDSTIGAYSS---LE 378 (989) T ss_dssp TTCCEEEEEECHHHHHHHH-HHHHHTTCCCCC--------CHHHHHTTSCEEEEEEEESSCCCTTCSCCEEHHHH---HH T ss_pred CCCCEEEEECCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCEECCCCCCCCCCCHHHH---HH T ss_conf 6999899989847899999-9876401222222002467799986289964999445865789767578888999---99 Q ss_pred HHHHHHHHCCCCC Q ss_conf 9998664201243 Q gi|254780754|r 82 NLVERLSVAVECT 94 (264) Q Consensus 82 ~~~~~l~~~~~~~ 94 (264) .+.++++.+.... T Consensus 379 ~i~eaId~i~~TA 391 (989) T 3opy_A 379 RIIELVDYIDATA 391 (989) T ss_dssp HHHHHHHHHHSSC T ss_pred HHHHHHHHHHHHH T ss_conf 9999999999976 No 19 >2f48_A Diphosphate--fructose-6-phosphate 1- phosphotransferase; HET: FBP; 2.11A {Borrelia burgdorferi B31} SCOP: c.89.1.1 PDB: 1kzh_A* Probab=92.76 E-value=0.26 Score=27.06 Aligned_cols=40 Identities=20% Similarity=0.326 Sum_probs=30.3 Q ss_pred HCCEEEEECCCHHHHHHHHHHH-----HCCCEEEEECC-------C-----CCCCCC Q ss_conf 5779999879548999999974-----12872994153-------4-----332010 Q gi|254780754|r 36 EADVIVVLGGDGFMLQSFHQSK-----EYDKPIYGMNC-------G-----SVGFLM 75 (264) Q Consensus 36 ~~Dlii~iGGDGT~L~a~~~~~-----~~~~PilGIn~-------G-----~lGFL~ 75 (264) +.|.+|+||||||+-.|..... ..+++|+||=. | ++||-+ T Consensus 166 ~Id~LviIGGddS~~~A~~Lae~~~~~~~~i~VIgVPKTIDNDl~~~~~d~s~GFdT 222 (555) T 2f48_A 166 NLNAIIIIGGDDSNTNAAILAEYFKKNGENIQVIGVPKTIDADLRNDHIEISFGFDS 222 (555) T ss_dssp TCSEEEEEESHHHHHHHHHHHHHHHHTTCCCEEEEEEEETTCCCCCSSCCCCEEHHH T ss_pred CCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCHHH T ss_conf 898899978768999999999999861679608984135367877752156633689 No 20 >2a9v_A GMP synthase; NP_394403.1, , structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI; 2.24A {Thermoplasma acidophilum} SCOP: c.23.16.1 Probab=91.23 E-value=0.23 Score=27.33 Aligned_cols=69 Identities=16% Similarity=0.218 Sum_probs=43.9 Q ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHC----------CCCCHHHCCEEEEECCCHH-------HHHHHHHHHHCCCEEE Q ss_conf 8765059999559989999999999870----------7888455779999879548-------9999999741287299 Q gi|254780754|r 2 DRNIQKIHFKASNAKKAQEAYDKFVKIY----------GNSTSEEADVIVVLGGDGF-------MLQSFHQSKEYDKPIY 64 (264) Q Consensus 2 ~~~~~ki~i~~~~~~~a~~~~~~l~~~~----------~~~~~~~~Dlii~iGGDGT-------~L~a~~~~~~~~~Pil 64 (264) ...|+||.++.+-..-...+..-|.+.- ...+.+++|-+|.-||.+. +....+.....++|+| T Consensus 10 ~~~m~~i~iiD~g~~~~~~i~r~L~~lG~~~~vv~~~~~~~~l~~~dgiIl~GG~~~~~~~~~~~~~l~~~~~~~~~PiL 89 (212) T 2a9v_A 10 HHHMLKIYVVDNGGQWTHREWRVLRELGVDTKIVPNDIDSSELDGLDGLVLSGGAPNIDEELDKLGSVGKYIDDHNYPIL 89 (212) T ss_dssp CCCCCBEEEEEESCCTTCHHHHHHHHTTCBCCEEETTSCGGGGTTCSEEEEEEECSCGGGTGGGHHHHHHHHHHCCSCEE T ss_pred CCCCCEEEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCHHHHHCCCEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCEE T ss_conf 06766799999987689999999997898389996979999983699199979998434343789999999985799899 Q ss_pred EECCCC Q ss_conf 415343 Q gi|254780754|r 65 GMNCGS 70 (264) Q Consensus 65 GIn~G~ 70 (264) ||=.|. T Consensus 90 GIClG~ 95 (212) T 2a9v_A 90 GICVGA 95 (212) T ss_dssp EETHHH T ss_pred EEHHHH T ss_conf 875988 No 21 >3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, infectious diseases, isomerase, center for structural genomics of infectious diseases; 2.35A {Vibrio cholerae} Probab=90.25 E-value=0.92 Score=23.56 Aligned_cols=39 Identities=18% Similarity=0.176 Sum_probs=34.3 Q ss_pred HHCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCC Q ss_conf 557799998795489999999741287299415343320 Q gi|254780754|r 35 EEADVIVVLGGDGFMLQSFHQSKEYDKPIYGMNCGSVGF 73 (264) Q Consensus 35 ~~~Dlii~iGGDGT~L~a~~~~~~~~~PilGIn~G~lGF 73 (264) ++||+|+++|.-.+.|-++-.+...++|+.-|..|-+-+ T Consensus 110 ~kpD~VlV~GDr~e~la~a~aa~~~~ipi~HiegG~rs~ 148 (396) T 3dzc_A 110 EQPDVVLVHGDTATTFAASLAAYYQQIPVGHVEAGLRTG 148 (396) T ss_dssp HCCSEEEEETTSHHHHHHHHHHHTTTCCEEEETCCCCCS T ss_pred CCCCEEEEECCCCCHHHHHHHHHHHCCCEEEEEECCCCC T ss_conf 199999995888622548999998299789997126546 No 22 >3m3p_A Glutamine amido transferase; structural genomics, nysgrc, PSI-2; HET: MSE; 1.30A {Methylobacillus flagellatus} PDB: 3l83_A* Probab=89.94 E-value=0.55 Score=24.96 Aligned_cols=68 Identities=12% Similarity=0.234 Sum_probs=41.1 Q ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHCC-----------C---CCHHHCCEEEEECCCH----------HHHHHHHHHHH Q ss_conf 7650599995599899999999998707-----------8---8845577999987954----------89999999741 Q gi|254780754|r 3 RNIQKIHFKASNAKKAQEAYDKFVKIYG-----------N---STSEEADVIVVLGGDG----------FMLQSFHQSKE 58 (264) Q Consensus 3 ~~~~ki~i~~~~~~~a~~~~~~l~~~~~-----------~---~~~~~~Dlii~iGGDG----------T~L~a~~~~~~ 58 (264) +.||++.++-....+..-....+.+..+ + .+.+++|.+|+.||-. .....++.+.. T Consensus 1 ~~mk~vlv~qh~~~e~~g~~~~~l~~~g~~~~v~~~~~~~~~P~~~~~~dglii~Gg~~~~~d~~p~~~~~~~~i~~~~~ 80 (250) T 3m3p_A 1 MSLKPVMIIQFSASEGPGHFGDFLAGEHIPFQVLRMDRSDPLPAEIRDCSGLAMMGGPMSANDDLPWMPTLLALIRDAVA 80 (250) T ss_dssp -CCCCEEEEESSSSCCCHHHHHHHHHTTCCEEEEEGGGTCCCCSCGGGSSEEEECCCSSCTTSCCTTHHHHHHHHHHHHH T ss_pred CCCCEEEEEECCCCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHH T ss_conf 99864999957999981399999985899799997899987877763389899909998777877658999999999997 Q ss_pred CCCEEEEECCCC Q ss_conf 287299415343 Q gi|254780754|r 59 YDKPIYGMNCGS 70 (264) Q Consensus 59 ~~~PilGIn~G~ 70 (264) .++|+|||=.|+ T Consensus 81 ~~~PilGIC~G~ 92 (250) T 3m3p_A 81 QRVPVIGHCLGG 92 (250) T ss_dssp HTCCEEEETHHH T ss_pred CCCCEEEEEHHH T ss_conf 599889985656 No 23 >2v4u_A CTP synthase 2; pyrimidine biosynthesis, glutamine amidotransferase, glutaminase domain, 5-OXO-L-norleucine, DON, ligase, phosphoprotein; HET: CYD; 2.3A {Homo sapiens} PDB: 2vkt_A Probab=89.90 E-value=0.26 Score=27.06 Aligned_cols=36 Identities=33% Similarity=0.459 Sum_probs=31.2 Q ss_pred HHHCCEEEEECCCHH-----HHHHHHHHHHCCCEEEEECCC Q ss_conf 455779999879548-----999999974128729941534 Q gi|254780754|r 34 SEEADVIVVLGGDGF-----MLQSFHQSKEYDKPIYGMNCG 69 (264) Q Consensus 34 ~~~~Dlii~iGGDGT-----~L~a~~~~~~~~~PilGIn~G 69 (264) .+++|-|++.||=|. .+.|++.+...++|+|||=+| T Consensus 88 L~~~dGIlVPGGFG~RGieGkI~Ai~yARen~IPfLGIClG 128 (289) T 2v4u_A 88 LCKADGILVPGGFGIRGTLGKLQAISWARTKKIPFLGVXLG 128 (289) T ss_dssp HHHCSEEEECSCCSSTTHHHHHHHHHHHHHTTCCEEEETHH T ss_pred HCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHH T ss_conf 43488379689788776158999999999849970235678 No 24 >1gpw_B Amidotransferase HISH; lyase/transferase, complex (lyase/transferase), histidine biosynthesis, glutaminase, glutamine amidotransferase; 2.4A {Thermotoga maritima} SCOP: c.23.16.1 PDB: 1k9v_F 1kxj_A Probab=88.29 E-value=0.63 Score=24.62 Aligned_cols=65 Identities=12% Similarity=0.204 Sum_probs=35.9 Q ss_pred EEEEEEECC--CHHH-HHHHHHHHHHC--------CCCCHHHCCEEEEEC-CC-HHH---------HHHHHHHHHCCCEE Q ss_conf 059999559--9899-99999999870--------788845577999987-95-489---------99999974128729 Q gi|254780754|r 6 QKIHFKASN--AKKA-QEAYDKFVKIY--------GNSTSEEADVIVVLG-GD-GFM---------LQSFHQSKEYDKPI 63 (264) Q Consensus 6 ~ki~i~~~~--~~~a-~~~~~~l~~~~--------~~~~~~~~Dlii~iG-GD-GT~---------L~a~~~~~~~~~Pi 63 (264) |||+++... +-.+ ....+++...+ .....+.+|.+|.=| |- ++. ..+++.+...++|+ T Consensus 1 MkI~IiDyg~gN~~si~~~l~~~g~~~~~~~~~~~~~~~~~~~D~iIlPG~G~~~~~~~~l~~~~l~~~I~~~~~~~~Pi 80 (201) T 1gpw_B 1 MRIGIISVGPGNIMNLYRGVKRASENFEDVSIELVESPRNDLYDLLFIPGVGHFGEGMRRLRENDLIDFVRKHVEDERYV 80 (201) T ss_dssp CEEEEECCSSSCCHHHHHHHHHHSTTBSSCEEEEECSCCSSCCSEEEECCCSCSHHHHHHHHHTTCHHHHHHHHHTTCEE T ss_pred CEEEEEECCCCHHHHHHHHHHHHCCCCCCCEEEEECCHHHCCCCEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCE T ss_conf 98999917985899999999985620453236970774660289799989875899999965658788999999769988 Q ss_pred EEECCCC Q ss_conf 9415343 Q gi|254780754|r 64 YGMNCGS 70 (264) Q Consensus 64 lGIn~G~ 70 (264) |||=.|. T Consensus 81 LGIClG~ 87 (201) T 1gpw_B 81 VGVCLGM 87 (201) T ss_dssp EEETHHH T ss_pred EEEEEEE T ss_conf 9998617 No 25 >1vgv_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, isomerase; HET: UD1; 2.31A {Escherichia coli} SCOP: c.87.1.3 PDB: 1f6d_A* Probab=87.04 E-value=1.1 Score=23.14 Aligned_cols=39 Identities=18% Similarity=0.094 Sum_probs=34.8 Q ss_pred HHCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCC Q ss_conf 557799998795489999999741287299415343320 Q gi|254780754|r 35 EEADVIVVLGGDGFMLQSFHQSKEYDKPIYGMNCGSVGF 73 (264) Q Consensus 35 ~~~Dlii~iGGDGT~L~a~~~~~~~~~PilGIn~G~lGF 73 (264) .++|+++++|...+.|-++-.+...++|+.-|..|-.++ T Consensus 85 ~kpD~v~v~GDr~e~la~a~aa~~~~Ipi~HiegG~~s~ 123 (384) T 1vgv_A 85 FKPDVVLVHGDTTTTLATSLAAFYQRIPVGHVEAGLRTG 123 (384) T ss_dssp HCCSEEEEETTCHHHHHHHHHHHTTTCCEEEESCCCCCS T ss_pred CCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEECCCCCC T ss_conf 599989996898437669999997599789984144567 No 26 >3ot5_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta; HET: PGE; 2.20A {Listeria monocytogenes} Probab=86.44 E-value=1.3 Score=22.55 Aligned_cols=39 Identities=15% Similarity=0.152 Sum_probs=34.6 Q ss_pred HHCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCC Q ss_conf 557799998795489999999741287299415343320 Q gi|254780754|r 35 EEADVIVVLGGDGFMLQSFHQSKEYDKPIYGMNCGSVGF 73 (264) Q Consensus 35 ~~~Dlii~iGGDGT~L~a~~~~~~~~~PilGIn~G~lGF 73 (264) ++||++++.|...+.|-++-.+...++|+.-|..|-..| T Consensus 113 ~kPD~vlV~GDr~~~la~alaa~~~~Ipi~HiegG~rs~ 151 (403) T 3ot5_A 113 ENPDIVLVHGDTTTSFAAGLATFYQQKMLGHVEAGLRTW 151 (403) T ss_dssp HCCSEEEEETTCHHHHHHHHHHHHTTCEEEEESCCCCCS T ss_pred HCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEECCCCCC T ss_conf 399999996888048999999998199789996466567 No 27 >2w7t_A CTP synthetase, putative cytidine triphosphate synthase; glutaminase domain, trypsanosoma brucei, ligase, acivicin; HET: 5CS; 2.10A {Trypanosoma brucei} Probab=85.83 E-value=0.59 Score=24.78 Aligned_cols=36 Identities=25% Similarity=0.324 Sum_probs=31.7 Q ss_pred HHHCCEEEEECCCHH-----HHHHHHHHHHCCCEEEEECCC Q ss_conf 455779999879548-----999999974128729941534 Q gi|254780754|r 34 SEEADVIVVLGGDGF-----MLQSFHQSKEYDKPIYGMNCG 69 (264) Q Consensus 34 ~~~~Dlii~iGGDGT-----~L~a~~~~~~~~~PilGIn~G 69 (264) ..++|-|++-||=|. .+.|++.+...++|+|||=.| T Consensus 65 L~~~dGIlvpgGFG~RG~eGkI~Ai~yARen~iPfLGIClG 105 (273) T 2w7t_A 65 LLGCDGIFVPGGFGNRGVDGKCAAAQVARMNNIPYFGVXLG 105 (273) T ss_dssp HHTCSEEEECCCCTTTTHHHHHHHHHHHHHHTCCEEEETHH T ss_pred HCCCCCEEECCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHH T ss_conf 42577468588578776478999999999748860245566 No 28 >1ka9_H Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.23.16.1 Probab=84.43 E-value=1.4 Score=22.39 Aligned_cols=65 Identities=20% Similarity=0.251 Sum_probs=38.2 Q ss_pred EEEEEEECCCHHHHHHHHHHHHHC-------CCCCHHHCCEEEEECC-C-H---------HHHHHHHHHHHCCCEEEEEC Q ss_conf 059999559989999999999870-------7888455779999879-5-4---------89999999741287299415 Q gi|254780754|r 6 QKIHFKASNAKKAQEAYDKFVKIY-------GNSTSEEADVIVVLGG-D-G---------FMLQSFHQSKEYDKPIYGMN 67 (264) Q Consensus 6 ~ki~i~~~~~~~a~~~~~~l~~~~-------~~~~~~~~Dlii~iGG-D-G---------T~L~a~~~~~~~~~PilGIn 67 (264) ||+.|+....-.-..+.+.+.+.- +..+.+++|.+|.=|+ . + -+..+.+.+...++|||||= T Consensus 3 mKi~IID~g~gN~~Sv~~~l~~lg~~~~ii~~~~~l~~~D~iIlPG~G~~~~~~~~l~~~~~~~~i~~~~~~~~PILGIC 82 (200) T 1ka9_H 3 MKALLIDYGSGNLRSAAKALEAAGFSVAVAQDPKAHEEADLLVLPGQGHFGQVMRAFQESGFVERVRRHLERGLPFLGIC 82 (200) T ss_dssp CEEEEECSSCSCHHHHHHHHHHTTCEEEEESSTTSCSSCSEEEECCCSCHHHHHHTTSSSCTHHHHHHHHHTTCCEEECT T ss_pred CEEEEEECCCCHHHHHHHHHHHCCCCEEEECCHHHHHHCCEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCEEEEH T ss_conf 77999948985899999999987998999889999853798999598758999976654592999999987599389982 Q ss_pred CCC Q ss_conf 343 Q gi|254780754|r 68 CGS 70 (264) Q Consensus 68 ~G~ 70 (264) .|. T Consensus 83 lG~ 85 (200) T 1ka9_H 83 VGM 85 (200) T ss_dssp HHH T ss_pred HHH T ss_conf 999 No 29 >2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A Probab=84.14 E-value=2.1 Score=21.32 Aligned_cols=66 Identities=8% Similarity=0.084 Sum_probs=44.6 Q ss_pred CCCCCEEEEEEECCCHHHHHHHHHHHHH-CCC---CC---------HHHCCEEEEECCCH-HHHHHHHHHHHCCCEEEEE Q ss_conf 9876505999955998999999999987-078---88---------45577999987954-8999999974128729941 Q gi|254780754|r 1 MDRNIQKIHFKASNAKKAQEAYDKFVKI-YGN---ST---------SEEADVIVVLGGDG-FMLQSFHQSKEYDKPIYGM 66 (264) Q Consensus 1 m~~~~~ki~i~~~~~~~a~~~~~~l~~~-~~~---~~---------~~~~Dlii~iGGDG-T~L~a~~~~~~~~~PilGI 66 (264) |.+..|||.++.++..-++.+...|.+. |.. .+ ...+|+++.=|.|| .+++.+|.. ...+||+-+ T Consensus 14 ~p~~~mrILvVEDd~~~~~~l~~~L~~~G~~v~~a~~g~~al~~l~~~~~DlviLp~~~G~ell~~ir~~-~~~~piiil 92 (137) T 2pln_A 14 VPRGSMRVLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLMDIRNYDLVMVSDKNALSFVSRIKEK-HSSIVVLVS 92 (137) T ss_dssp -CTTCSEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHSCCSEEEECSTTHHHHHHHHHHH-STTSEEEEE T ss_pred CCCCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHC-CCCCCEEEE T ss_conf 8988888999959999999999999988999999899999999997289999998278763799999962-889975999 Q ss_pred C Q ss_conf 5 Q gi|254780754|r 67 N 67 (264) Q Consensus 67 n 67 (264) . T Consensus 93 T 93 (137) T 2pln_A 93 S 93 (137) T ss_dssp E T ss_pred E T ss_conf 6 No 30 >3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver domain, target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405} Probab=84.00 E-value=2.1 Score=21.28 Aligned_cols=91 Identities=13% Similarity=0.101 Sum_probs=54.9 Q ss_pred CCCEEEEEEECCCHHHHHHHHHHHHH-CCC---C-----------CHHHCCEEEE----ECCCHHH-HHHHHHHHHCCCE Q ss_conf 76505999955998999999999987-078---8-----------8455779999----8795489-9999997412872 Q gi|254780754|r 3 RNIQKIHFKASNAKKAQEAYDKFVKI-YGN---S-----------TSEEADVIVV----LGGDGFM-LQSFHQSKEYDKP 62 (264) Q Consensus 3 ~~~~ki~i~~~~~~~a~~~~~~l~~~-~~~---~-----------~~~~~Dlii~----iGGDGT~-L~a~~~~~~~~~P 62 (264) ++|.||-++.++..-++.+...|... |.. . ...++|++++ =|+||.- ++..+. ....+| T Consensus 1 M~m~rILIVDDd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~~~~~~dlvilD~~mp~~~G~~l~~~~~~-~~~~~p 79 (143) T 3jte_A 1 MSLAKILVIDDESTILQNIKFLLEIDGNEVLTASSSTEGLRIFTENCNSIDVVITDMKMPKLSGMDILREIKK-ITPHMA 79 (143) T ss_dssp --CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHTTTTCCEEEEESCCSSSCHHHHHHHHHH-HCTTCE T ss_pred CCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHH-HCCCCC T ss_conf 9998899996999999999999998799999978899999999845999739997477777788999999998-789996 Q ss_pred EEEECC-------------CCCCCCCCCCCHHHHHHHHHHCCCCC Q ss_conf 994153-------------43320104458789998664201243 Q gi|254780754|r 63 IYGMNC-------------GSVGFLMNEYCIENLVERLSVAVECT 94 (264) Q Consensus 63 ilGIn~-------------G~lGFL~~~~~~~~~~~~l~~~~~~~ 94 (264) |+-+.. |--+||.-+++.+++...+....... T Consensus 80 vI~lT~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~l~~~ 124 (143) T 3jte_A 80 VIILTGHGDLDNAILAMKEGAFEYLRKPVTAQDLSIAINNAINRK 124 (143) T ss_dssp EEEEECTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHH T ss_pred EEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHH T ss_conf 999988899999999998699899828999999999999999999 No 31 >1oi4_A Hypothetical protein YHBO; PFPI/THIJ family, complete proteome, PFPI, THIJ, bacterial targets at IGS-CNRS, france, BIGS, structural genomics; 2.03A {Escherichia coli} SCOP: c.23.16.2 Probab=83.72 E-value=1.5 Score=22.26 Aligned_cols=39 Identities=21% Similarity=0.362 Sum_probs=31.7 Q ss_pred CHHHCCEEEEECCCHH--------HHHHHHHHHHCCCEEEEECCCCC Q ss_conf 8455779999879548--------99999997412872994153433 Q gi|254780754|r 33 TSEEADVIVVLGGDGF--------MLQSFHQSKEYDKPIYGMNCGSV 71 (264) Q Consensus 33 ~~~~~Dlii~iGGDGT--------~L~a~~~~~~~~~PilGIn~G~l 71 (264) .++++|.+++.||.|+ ++..++.+...++||.+|..|.. T Consensus 83 ~~~~yDaliiPGG~~~~~l~~~~~l~~~l~~~~~~~k~i~aIC~g~~ 129 (193) T 1oi4_A 83 TPAEFDALLLPGGHSPDYLRGDNRFVTFTRDFVNSGKPVFAICHGPQ 129 (193) T ss_dssp CGGGCSEEEECCBTHHHHHTTSHHHHHHHHHHHHTTCCEEEETTTHH T ss_pred CHHHCCEEEECCCCCHHHHHHCHHHHHHHHHHHHHCCEEECCCHHHH T ss_conf 96249399989983086763195889999998860660340470789 No 32 >3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein structure initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1} Probab=83.30 E-value=2.3 Score=21.10 Aligned_cols=90 Identities=11% Similarity=0.107 Sum_probs=55.1 Q ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHCCC-----CCH---------HHCCEEEE----ECCCH-HHHHHHHHHHH-CCCE Q ss_conf 76505999955998999999999987078-----884---------55779999----87954-89999999741-2872 Q gi|254780754|r 3 RNIQKIHFKASNAKKAQEAYDKFVKIYGN-----STS---------EEADVIVV----LGGDG-FMLQSFHQSKE-YDKP 62 (264) Q Consensus 3 ~~~~ki~i~~~~~~~a~~~~~~l~~~~~~-----~~~---------~~~Dlii~----iGGDG-T~L~a~~~~~~-~~~P 62 (264) ++|.||.++.++......+...|. ..+- ... ..+|+|++ =|.|| .+++.++.... .++| T Consensus 1 m~~~rILIVDD~~~~~~~l~~~L~-~~G~~v~~a~~g~eal~~l~~~~pdliilD~~mP~~dG~el~~~ir~~~~~~~ip 79 (138) T 3c3m_A 1 MSLYTILVVDDSPMIVDVFVTMLE-RGGYRPITAFSGEECLEALNATPPDLVLLDIMMEPMDGWETLERIKTDPATRDIP 79 (138) T ss_dssp -CCCEEEEECSCHHHHHHHHHHHH-HTTCEEEEESSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTSC T ss_pred CCCCEEEEEECCHHHHHHHHHHHH-HCCCEEEEECCHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCC T ss_conf 998989999799999999999999-8799999989999999997538998999706789998899999998486558998 Q ss_pred EEEECC-------------CCCCCCCCCCCHHHHHHHHHHCCCC Q ss_conf 994153-------------4332010445878999866420124 Q gi|254780754|r 63 IYGMNC-------------GSVGFLMNEYCIENLVERLSVAVEC 93 (264) Q Consensus 63 ilGIn~-------------G~lGFL~~~~~~~~~~~~l~~~~~~ 93 (264) |+.+.. |--+||+-+++.+++.+.+...... T Consensus 80 vI~ls~~~~~~~~~~~~~~G~~d~l~KP~~~~~L~~~l~~~l~r 123 (138) T 3c3m_A 80 VLMLTAKPLTPEEANEYGSYIEDYILKPTTHHQLYEAIEHVLAR 123 (138) T ss_dssp EEEEESSCCCHHHHHHTTTTCSEEEECCCHHHHHHHHHHHHHSC T ss_pred EEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHH T ss_conf 79986379899999998679988998989999999999999996 No 33 >1vco_A CTP synthetase; tetramer, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLN; 2.15A {Thermus thermophilus} SCOP: c.23.16.1 c.37.1.10 PDB: 1vcn_A 1vcm_A Probab=82.92 E-value=0.47 Score=25.39 Aligned_cols=35 Identities=26% Similarity=0.441 Sum_probs=31.2 Q ss_pred HHCCEEEEECCCHH-----HHHHHHHHHHCCCEEEEECCC Q ss_conf 55779999879548-----999999974128729941534 Q gi|254780754|r 35 EEADVIVVLGGDGF-----MLQSFHQSKEYDKPIYGMNCG 69 (264) Q Consensus 35 ~~~Dlii~iGGDGT-----~L~a~~~~~~~~~PilGIn~G 69 (264) +++|-|++-||=|. .+.|++.+...++|+|||=+| T Consensus 354 ~~~dGIlVPGGFG~RGiEGKI~Ai~yARen~IPfLGICLG 393 (550) T 1vco_A 354 RDVSGILVPGGFGVRGIEGKVRAAQYARERKIPYLGICLG 393 (550) T ss_dssp TTCSCEEECCCCSSTTHHHHHHHHHHHHHTTCCEEEETHH T ss_pred HCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCC T ss_conf 0588389417787677458999999898739984200122 No 34 >1g2i_A Protease I; intracellular protease, ATP-independent intracellular protease, catalytical triad, PFPI, cysteine protease, nucleophIle elbow; 2.00A {Pyrococcus horikoshii} SCOP: c.23.16.2 Probab=82.29 E-value=1.7 Score=21.80 Aligned_cols=40 Identities=23% Similarity=0.286 Sum_probs=33.1 Q ss_pred CCHHHCCEEEEECCCHH--------HHHHHHHHHHCCCEEEEECCCCC Q ss_conf 88455779999879548--------99999997412872994153433 Q gi|254780754|r 32 STSEEADVIVVLGGDGF--------MLQSFHQSKEYDKPIYGMNCGSV 71 (264) Q Consensus 32 ~~~~~~Dlii~iGGDGT--------~L~a~~~~~~~~~PilGIn~G~l 71 (264) ..++++|.+++.||.|+ ++..++.+...++++.+|..|.+ T Consensus 57 ~~~~~~d~liipGG~~~~~~~~~~~l~~~l~~~~~~~k~i~aic~g~~ 104 (166) T 1g2i_A 57 VNPEEFDALVLPGGRAPERVRLNEKAVSIARKMFSEGKPVASICHGPQ 104 (166) T ss_dssp CCGGGCSEEEECCBSHHHHHTTCHHHHHHHHHHHHTTCCEEEETTTTH T ss_pred CCCCCCCEEEECCCCCHHHHCCCHHHHHHHHHHHHCCCEEEECCCHHH T ss_conf 792008789984653044421587889999999864999983361889 No 35 >1q7r_A Predicted amidotransferase; structural genomics, YAAE, PDX2, predicted glutamine amidotransferase, PSI; HET: MSE; 1.90A {Geobacillus stearothermophilus} SCOP: c.23.16.1 Probab=81.53 E-value=2.6 Score=20.69 Aligned_cols=66 Identities=21% Similarity=0.333 Sum_probs=37.5 Q ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHCC--------CCCHHHCCEEEEECCCHH----------HHHHHHHHHHCCCEEE Q ss_conf 7650599995599899999999998707--------888455779999879548----------9999999741287299 Q gi|254780754|r 3 RNIQKIHFKASNAKKAQEAYDKFVKIYG--------NSTSEEADVIVVLGGDGF----------MLQSFHQSKEYDKPIY 64 (264) Q Consensus 3 ~~~~ki~i~~~~~~~a~~~~~~l~~~~~--------~~~~~~~Dlii~iGGDGT----------~L~a~~~~~~~~~Pil 64 (264) ...|||++++-.-. -.+..+-|. ..+ .++.+++|.+|.=||--+ +..+++.+...++|+| T Consensus 21 ~~~mkigvl~~~Gn-~~s~~~AL~-~lG~~~~iv~~~~~l~~~D~lILPGG~~~~~~~~l~~~~l~~~I~~~~~~gkPiL 98 (219) T 1q7r_A 21 QSNMKIGVLGLQGA-VREHVRAIE-ACGAEAVIVKKSEQLEGLDGLVLPGGESTTMRRLIDRYGLMEPLKQFAAAGKPMF 98 (219) T ss_dssp CCCCEEEEESCGGG-CHHHHHHHH-HTTCEEEEECSGGGGTTCSEEEECCCCHHHHHHHHHHTTCHHHHHHHHHTTCCEE T ss_pred CCCCEEEEEECCCC-HHHHHHHHH-HCCCCEEEECCHHHHHCCCEEEECCCCHHHHHHHHHHCCCHHHHHHHHHCCCCEE T ss_conf 26977999965883-999999999-8799699989989982499999999987999998657873899999997799799 Q ss_pred EECCCC Q ss_conf 415343 Q gi|254780754|r 65 GMNCGS 70 (264) Q Consensus 65 GIn~G~ 70 (264) ||=.|. T Consensus 99 GIClGm 104 (219) T 1q7r_A 99 GTCAGL 104 (219) T ss_dssp EETTHH T ss_pred EECCCH T ss_conf 994006 No 36 >3nva_A CTP synthase; rossman fold, nucleotide binding, LIG; 2.50A {Sulfolobus solfataricus} Probab=81.45 E-value=1.1 Score=23.19 Aligned_cols=36 Identities=25% Similarity=0.433 Sum_probs=31.8 Q ss_pred HHHCCEEEEECCCHH-----HHHHHHHHHHCCCEEEEECCC Q ss_conf 455779999879548-----999999974128729941534 Q gi|254780754|r 34 SEEADVIVVLGGDGF-----MLQSFHQSKEYDKPIYGMNCG 69 (264) Q Consensus 34 ~~~~Dlii~iGGDGT-----~L~a~~~~~~~~~PilGIn~G 69 (264) .+++|-|++-||=|. .+.|++.+...++|+|||=+| T Consensus 348 L~~~dGIlVPGGFG~RGiEGkI~Ai~yAREn~IPfLGICLG 388 (535) T 3nva_A 348 LGNVNGIIVLPGFGSRGAEGKIKAIKYAREHNIPFLGICFG 388 (535) T ss_dssp TTSCSEEEECCCCSSTTHHHHHHHHHHHHHHTCCEEEETHH T ss_pred HHCCCCEEECCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHH T ss_conf 73288189579876565148999999998649980214432 No 37 >1ta9_A Glycerol dehydrogenase; oxidoreductase; 1.90A {Schizosaccharomyces pombe} Probab=81.06 E-value=2.1 Score=21.29 Aligned_cols=33 Identities=21% Similarity=0.310 Sum_probs=26.6 Q ss_pred HHCCEEEEECCCHHHHHHHHHHH-HCCCEEEEECC Q ss_conf 55779999879548999999974-12872994153 Q gi|254780754|r 35 EEADVIVVLGGDGFMLQSFHQSK-EYDKPIYGMNC 68 (264) Q Consensus 35 ~~~Dlii~iGGDGT~L~a~~~~~-~~~~PilGIn~ 68 (264) +++|+||.+|| |+.+-+++... ...+|++-|-+ T Consensus 144 ~~~D~IIAVGG-GSviD~AK~ia~~~~~p~i~VPT 177 (450) T 1ta9_A 144 DDTQVIIGVGG-GKTMDSAKYIAHSMNLPSIICPT 177 (450) T ss_dssp TTCCEEEEEES-HHHHHHHHHHHHHTTCCEEEEES T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHCCCCEEEECC T ss_conf 28998999679-63868889988642786688458 No 38 >1s1m_A CTP synthase; CTP synthetase, UTP:ammonia ligase (ADP-forming), cytidine 5'-triphosphate synthase, ammonia lyase; 2.30A {Escherichia coli} SCOP: c.23.16.1 c.37.1.10 PDB: 2ad5_A* Probab=80.79 E-value=1.9 Score=21.52 Aligned_cols=38 Identities=29% Similarity=0.514 Sum_probs=32.7 Q ss_pred CCHHHCCEEEEECCCHH-----HHHHHHHHHHCCCEEEEECCC Q ss_conf 88455779999879548-----999999974128729941534 Q gi|254780754|r 32 STSEEADVIVVLGGDGF-----MLQSFHQSKEYDKPIYGMNCG 69 (264) Q Consensus 32 ~~~~~~Dlii~iGGDGT-----~L~a~~~~~~~~~PilGIn~G 69 (264) +..+++|-|++-||=|. .+.|++.+...++|+|||=+| T Consensus 339 ~~L~~~dGIlVPGGFG~RGiEGKI~Ai~yARen~IPfLGICLG 381 (545) T 1s1m_A 339 EILKGLDAILVPGGFGYRGVEGMITTARFARENNIPYLGICLG 381 (545) T ss_dssp TTTTTCSEEEECCCCSSTTHHHHHHHHHHHHHTTCCEEEETHH T ss_pred HHHCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCEEEHHHH T ss_conf 4421356199678888777031999999997679985324676 No 39 >3beo_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, allosteric, regulation, isomerase; HET: UD1 UDP; 1.70A {Bacillus anthracis} PDB: 1o6c_A Probab=80.62 E-value=2.6 Score=20.76 Aligned_cols=38 Identities=13% Similarity=0.183 Sum_probs=33.6 Q ss_pred HCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCC Q ss_conf 57799998795489999999741287299415343320 Q gi|254780754|r 36 EADVIVVLGGDGFMLQSFHQSKEYDKPIYGMNCGSVGF 73 (264) Q Consensus 36 ~~Dlii~iGGDGT~L~a~~~~~~~~~PilGIn~G~lGF 73 (264) +||+++++|.-.+.|-++-.+...++|+.-|..|-.-+ T Consensus 95 kpD~vlv~GDr~e~la~a~aa~~~~ipi~HiegG~rs~ 132 (375) T 3beo_A 95 KPDIVLVHGDTTTTFIASLAAFYNQIPVGHVEAGLRTW 132 (375) T ss_dssp CCSEEEEETTSHHHHHHHHHHHHTTCCEEEESCCCCCS T ss_pred CCCEEEEECCCCHHHHHHHHHHHCCCCEEEEECCCCCC T ss_conf 99889994687247779999998198389962476547 No 40 >1o1y_A Conserved hypothetical protein TM1158; structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 1.70A {Thermotoga maritima} SCOP: c.23.16.1 Probab=80.31 E-value=1.6 Score=21.97 Aligned_cols=38 Identities=29% Similarity=0.483 Sum_probs=27.2 Q ss_pred CHHHCCEEEEECCC------H------HHHHHHHHHHHCCCEEEEECCCC Q ss_conf 84557799998795------4------89999999741287299415343 Q gi|254780754|r 33 TSEEADVIVVLGGD------G------FMLQSFHQSKEYDKPIYGMNCGS 70 (264) Q Consensus 33 ~~~~~Dlii~iGGD------G------T~L~a~~~~~~~~~PilGIn~G~ 70 (264) ..+++|.+|+.||- . ......+.+...++|+|||=.|+ T Consensus 54 ~~~~~D~lii~GGp~~~~~~~~~p~~~~~~~li~~~~~~~~PiLGIClG~ 103 (239) T 1o1y_A 54 PLEEYSLVVLLGGYMGAYEEEKYPFLKYEFQLIEEILKKEIPFLGICLGS 103 (239) T ss_dssp CGGGCSEEEECCCSCCTTCTTTCTHHHHHHHHHHHHHHHTCCEEEETHHH T ss_pred CHHHCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECHHH T ss_conf 63228989988999877777668212999999999997699999981899 No 41 >3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901} Probab=79.72 E-value=3 Score=20.31 Aligned_cols=89 Identities=20% Similarity=0.301 Sum_probs=54.6 Q ss_pred CCCCCEEEEEEECCCHHHHHHHHHHHHHCCC-----C----------CHHHCCEEEE---E-CC-CH-HHHHHHHHHHHC Q ss_conf 9876505999955998999999999987078-----8----------8455779999---8-79-54-899999997412 Q gi|254780754|r 1 MDRNIQKIHFKASNAKKAQEAYDKFVKIYGN-----S----------TSEEADVIVV---L-GG-DG-FMLQSFHQSKEY 59 (264) Q Consensus 1 m~~~~~ki~i~~~~~~~a~~~~~~l~~~~~~-----~----------~~~~~Dlii~---i-GG-DG-T~L~a~~~~~~~ 59 (264) |..+-+|+.++ .+++...+....+.+..+- . ....+|+|+. + +| || .+++..+.. . T Consensus 1 mslk~~rILiV-DD~~~~~~~l~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~dlillD~~mp~g~dG~e~~~~ir~~--~ 77 (140) T 3h5i_A 1 MSLKDKKILIV-EDSKFQAKTIANILNKYGYTVEIALTGEAAVEKVSGGWYPDLILMDIELGEGMDGVQTALAIQQI--S 77 (140) T ss_dssp -----CEEEEE-CSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTTCCCSEEEEESSCSSSCCHHHHHHHHHHH--C T ss_pred CCCCCCEEEEE-ECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHC--C T ss_conf 99899999999-59899999999999987999999898999999998469998999726653357899999999856--9 Q ss_pred CCEEEEECC-------------CCCCCCCCCCCHHHHHHHHHHCCC Q ss_conf 872994153-------------433201044587899986642012 Q gi|254780754|r 60 DKPIYGMNC-------------GSVGFLMNEYCIENLVERLSVAVE 92 (264) Q Consensus 60 ~~PilGIn~-------------G~lGFL~~~~~~~~~~~~l~~~~~ 92 (264) ++||+-+.. |--+||+-++..+++...+..... T Consensus 78 ~~PvI~lT~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~l~ 123 (140) T 3h5i_A 78 ELPVVFLTAHTEPAVVEKIRSVTAYGYVMKSATEQVLITIVEMALR 123 (140) T ss_dssp CCCEEEEESSSSCCCCGGGGGSCEEEEEETTCCHHHHHHHHHHHHH T ss_pred CCCEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH T ss_conf 9989999899999999999987999899898999999999999999 No 42 >2iss_D Glutamine amidotransferase subunit PDXT; (beta/alpha)8-barrel, alpha/beta three layer sandwich, lyase; HET: 5RP; 2.90A {Thermotoga maritima} Probab=79.51 E-value=1.6 Score=22.12 Aligned_cols=62 Identities=15% Similarity=0.242 Sum_probs=35.8 Q ss_pred EEEEEEEC-CCHHHHHHHHHHHHHCC--------CCCHHHCCEEEEECCC-HHH---------HHHHHHHHHCCCEEEEE Q ss_conf 05999955-99899999999998707--------8884557799998795-489---------99999974128729941 Q gi|254780754|r 6 QKIHFKAS-NAKKAQEAYDKFVKIYG--------NSTSEEADVIVVLGGD-GFM---------LQSFHQSKEYDKPIYGM 66 (264) Q Consensus 6 ~ki~i~~~-~~~~a~~~~~~l~~~~~--------~~~~~~~Dlii~iGGD-GT~---------L~a~~~~~~~~~PilGI 66 (264) |||++++- -+..+ ..+-|. +.+ .++.+++|.+|.=||- ++. +.+.+.+...++|+||| T Consensus 21 mkIgVi~~~Gn~~s--~~~aL~-~lG~~~~iv~~~~~l~~~D~lILPGG~~~~~~~~l~~~~~~~~i~~~~~~~kPiLGI 97 (208) T 2iss_D 21 MKIGVLGVQGDVRE--HVEALH-KLGVETLIVKLPEQLDMVDGLILPGGESTTMIRILKEMDMDEKLVERINNGLPVFAT 97 (208) T ss_dssp CEEEEECSSSCHHH--HHHHHH-HTTCEEEEECSGGGGGGCSEEEECSSCHHHHHHHHHHTTCHHHHHHHHHTTCCEEEE T ss_pred CEEEEEECCCCHHH--HHHHHH-HCCCCEEEECCHHHHHCCCEEEECCCCHHHHHHHHHHCCCHHHHHHHHHCCCCEEEE T ss_conf 78999956887999--999999-889989998998998259999999999899999999869889999999869988998 Q ss_pred CCCC Q ss_conf 5343 Q gi|254780754|r 67 NCGS 70 (264) Q Consensus 67 n~G~ 70 (264) =.|. T Consensus 98 ClG~ 101 (208) T 2iss_D 98 CAGV 101 (208) T ss_dssp THHH T ss_pred CCCH T ss_conf 7241 No 43 >3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} Probab=77.60 E-value=3.5 Score=19.91 Aligned_cols=92 Identities=17% Similarity=0.247 Sum_probs=52.6 Q ss_pred CCCCCEEEEEEECCCHHHHHHHHHHHHHCCC--------------CCHHHCCEEEEE------CCCHHHHHHHHHHHHCC Q ss_conf 9876505999955998999999999987078--------------884557799998------79548999999974128 Q gi|254780754|r 1 MDRNIQKIHFKASNAKKAQEAYDKFVKIYGN--------------STSEEADVIVVL------GGDGFMLQSFHQSKEYD 60 (264) Q Consensus 1 m~~~~~ki~i~~~~~~~a~~~~~~l~~~~~~--------------~~~~~~Dlii~i------GGDGT~L~a~~~~~~~~ 60 (264) |..+-+..-++.++.+...+....+.+..+- -..+.+|++|+. +|+|..+.......... T Consensus 1 Ms~~~~p~VLIVDDd~~~r~~l~~~L~~~g~~v~~a~~~~eal~~l~~~~~d~vilD~~l~~~~~~gl~~~~~~~~~~~~ 80 (136) T 3kto_A 1 MSLNHHPIIYLVDHQKDARAALSKLLSPLDVTIQCFASAESFMRQQISDDAIGMIIEAHLEDKKDSGIELLETLVKRGFH 80 (136) T ss_dssp ------CEEEEECSCHHHHHHHHHHHTTSSSEEEEESSHHHHTTSCCCTTEEEEEEETTGGGBTTHHHHHHHHHHHTTCC T ss_pred CCCCCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHCCCC T ss_conf 98999977999979999999999999987999999899999999998479988999936864788408999999750268 Q ss_pred CEEEEECC-------------CCCCCCCCCCCHHHHHHHHHHCCC Q ss_conf 72994153-------------433201044587899986642012 Q gi|254780754|r 61 KPIYGMNC-------------GSVGFLMNEYCIENLVERLSVAVE 92 (264) Q Consensus 61 ~PilGIn~-------------G~lGFL~~~~~~~~~~~~l~~~~~ 92 (264) +|++-+-. |--+||.-++..+.+.+.+.++.. T Consensus 81 ~pvi~lt~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~l~ 125 (136) T 3kto_A 81 LPTIVMASSSDIPTAVRAMRASAADFIEKPFIEHVLVHDVQQIIN 125 (136) T ss_dssp CCEEEEESSCCHHHHHHHHHTTCSEEEESSBCHHHHHHHHHHHHH T ss_pred CCEEEEEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH T ss_conf 867999705999999999975994899898999999999999999 No 44 >2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A* Probab=77.42 E-value=3.5 Score=19.87 Aligned_cols=85 Identities=16% Similarity=0.290 Sum_probs=47.6 Q ss_pred CEEEEEEECCCHHHHHHHHHHHHH-CCC---CC---------HHHCCEEEE----ECCCHH-HHHHHHHHHHCCCEEEEE Q ss_conf 505999955998999999999987-078---88---------455779999----879548-999999974128729941 Q gi|254780754|r 5 IQKIHFKASNAKKAQEAYDKFVKI-YGN---ST---------SEEADVIVV----LGGDGF-MLQSFHQSKEYDKPIYGM 66 (264) Q Consensus 5 ~~ki~i~~~~~~~a~~~~~~l~~~-~~~---~~---------~~~~Dlii~----iGGDGT-~L~a~~~~~~~~~PilGI 66 (264) |+||-++.++..-+..+...|... |.. .. .+.+|+|+. =|+||. +++..+. ...+||+-+ T Consensus 1 M~rILiVDDd~~~~~~l~~~L~~~g~~v~~a~~g~~al~~l~~~~~dliilD~~mp~~dG~~~l~~~~~--~~~~pvi~l 78 (120) T 2a9o_A 1 MKKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAEQPDIIILDLMLPEIDGLEVAKTIRK--TSSVPILML 78 (120) T ss_dssp -CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHHCCSEEEECSSCSSSCHHHHHHHHHH--HCCCCEEEE T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHH--CCCCCEEEE T ss_conf 988999979999999999999988999999899999999998579989998299999899999999886--599819999 Q ss_pred CC-------------CCCCCCCCCCCHHHHHHHHHHCC Q ss_conf 53-------------43320104458789998664201 Q gi|254780754|r 67 NC-------------GSVGFLMNEYCIENLVERLSVAV 91 (264) Q Consensus 67 n~-------------G~lGFL~~~~~~~~~~~~l~~~~ 91 (264) .. |--+||.-++..+++...+.... T Consensus 79 t~~~~~~~~~~a~~~Ga~d~l~KP~~~~~L~~~i~~~l 116 (120) T 2a9o_A 79 SAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALL 116 (120) T ss_dssp ESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHH T ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH T ss_conf 79899999999998799899989899999999999999 No 45 >2gru_A 2-deoxy-scyllo-inosose synthase; aminoglycoside, 2-deoxystreptamine, dehydroquinate synthase, lyase; HET: NAD EXO CAK; 2.15A {Bacillus circulans} PDB: 2d2x_A* Probab=76.62 E-value=2.5 Score=20.78 Aligned_cols=36 Identities=14% Similarity=0.127 Sum_probs=24.1 Q ss_pred CCHHHCCEEEEECCCHHHHHHHHHHH---HCCCEEEEECC Q ss_conf 88455779999879548999999974---12872994153 Q gi|254780754|r 32 STSEEADVIVVLGGDGFMLQSFHQSK---EYDKPIYGMNC 68 (264) Q Consensus 32 ~~~~~~Dlii~iGGDGT~L~a~~~~~---~~~~PilGIn~ 68 (264) ...+..|++|.+|| |+.+-.+..+. .+++|++-|=+ T Consensus 90 ~~~~r~~~iiaiGG-G~v~D~agf~As~~~RGi~~i~iPT 128 (368) T 2gru_A 90 LGANRRTAIVAVGG-GLTGNVAGVAAGMMFRGIALIHVPT 128 (368) T ss_dssp TTCCTTEEEEEEES-HHHHHHHHHHHHHBTTCCEEEEEEC T ss_pred CCCCCCCEEEEECC-CHHHHHHHHHHHHHHCCCCEEECCC T ss_conf 59997753899659-3155489999999618983795787 No 46 >1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A substrate tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A Probab=76.43 E-value=2.1 Score=21.31 Aligned_cols=66 Identities=15% Similarity=0.304 Sum_probs=38.6 Q ss_pred CCCEEEEEEECCC--HHHHHHHHHHHHHC------C---CCCHHHCCEEEEEC-CC-HH---------HHHHHHHHHHCC Q ss_conf 7650599995599--89999999999870------7---88845577999987-95-48---------999999974128 Q gi|254780754|r 3 RNIQKIHFKASNA--KKAQEAYDKFVKIY------G---NSTSEEADVIVVLG-GD-GF---------MLQSFHQSKEYD 60 (264) Q Consensus 3 ~~~~ki~i~~~~~--~~a~~~~~~l~~~~------~---~~~~~~~Dlii~iG-GD-GT---------~L~a~~~~~~~~ 60 (264) -+|++|.|+.... -.| +.+-|.+.- . ....+++|.+|.=| |- |+ +..+.+.+...+ T Consensus 2 ~~M~~I~IIDyg~GNi~S--v~~aL~~lg~~~~ii~~~~~~~i~~~d~IILPGVGsF~~~m~~L~~~~l~~~I~~~~~~~ 79 (555) T 1jvn_A 2 SHMPVVHVIDVESGNLQS--LTNAIEHLGYEVQLVKSPKDFNISGTSRLILPGVGNYGHFVDNLFNRGFEKPIREYIESG 79 (555) T ss_dssp CSSCEEEEECCSCSCCHH--HHHHHHHTTCEEEEESSGGGCCSTTCSCEEEEECSCHHHHHHHHHHTTCHHHHHHHHHTT T ss_pred CCCCEEEEEECCCCHHHH--HHHHHHHCCCCEEEEECCCHHHHHCCCEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHCC T ss_conf 989989999799868999--999999869976999687866884599899999997799999999879699999999869 Q ss_pred CEEEEECCCC Q ss_conf 7299415343 Q gi|254780754|r 61 KPIYGMNCGS 70 (264) Q Consensus 61 ~PilGIn~G~ 70 (264) +|+|||=+|. T Consensus 80 ~PILGICLGm 89 (555) T 1jvn_A 80 KPIMGIXVGL 89 (555) T ss_dssp CCEEEEEHHH T ss_pred CCEEEHHHHH T ss_conf 9499958979 No 47 >1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 Probab=76.20 E-value=3.8 Score=19.66 Aligned_cols=87 Identities=14% Similarity=0.206 Sum_probs=53.7 Q ss_pred CEEEEEEECCCHHHHHHHHHHHHHCCC----------CCHHHCCEEEEE----CCCHH-HHHHHHHHHHCCCEEEEECC- Q ss_conf 505999955998999999999987078----------884557799998----79548-99999997412872994153- Q gi|254780754|r 5 IQKIHFKASNAKKAQEAYDKFVKIYGN----------STSEEADVIVVL----GGDGF-MLQSFHQSKEYDKPIYGMNC- 68 (264) Q Consensus 5 ~~ki~i~~~~~~~a~~~~~~l~~~~~~----------~~~~~~Dlii~i----GGDGT-~L~a~~~~~~~~~PilGIn~- 68 (264) |+||.++.++..-+..+...|...... ...+.+|+++.= |+||. +++..+. ....+|++-+-. T Consensus 2 M~kILiVdDd~~~~~~l~~~L~~~g~v~~~~~~~eal~~~~~~DlvilD~~lp~~~g~~~~~~~~~-~~~~~~iiilt~~ 80 (220) T 1p2f_A 2 MWKIAVVDDDKNILKKVSEKLQQLGRVKTFLTGEDFLNDEEAFHVVVLDVMLPDYSGYEICRMIKE-TRPETWVILLTLL 80 (220) T ss_dssp CEEEEEECSCHHHHHHHHHHHTTTEEEEEESSHHHHHHCCSCCSEEEEESBCSSSBHHHHHHHHHH-HCTTSEEEEEESC T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCEEEEECCHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHH-CCCCEEEEECCCC T ss_conf 988999959899999999999869999998799999952789999999799998886023332110-2442034301223 Q ss_pred ------------CCCCCCCCCCCHHHHHHHHHHCCC Q ss_conf ------------433201044587899986642012 Q gi|254780754|r 69 ------------GSVGFLMNEYCIENLVERLSVAVE 92 (264) Q Consensus 69 ------------G~lGFL~~~~~~~~~~~~l~~~~~ 92 (264) |--+|+.-+++.+++...+..... T Consensus 81 ~~~~~~~~~~~~gaddyl~KP~~~~eL~~ri~~~l~ 116 (220) T 1p2f_A 81 SDDESVLKGFEAGADDYVTKPFNPEILLARVKRFLE 116 (220) T ss_dssp CSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHH T ss_pred CCCEEEEEEECCCCCEEEECCCCCCHHHHHHHHHHH T ss_conf 230036754414652224357320018999999983 No 48 >1rrm_A Lactaldehyde reductase; structural genomics, dehydrogenase, PSI, protein structure initiative; HET: APR; 1.60A {Escherichia coli} SCOP: e.22.1.2 PDB: 2bi4_A* 2bl4_A* Probab=75.84 E-value=3.3 Score=20.08 Aligned_cols=22 Identities=23% Similarity=0.400 Sum_probs=17.2 Q ss_pred HHCCEEEEECCCHHHHHHHHHHH Q ss_conf 55779999879548999999974 Q gi|254780754|r 35 EEADVIVVLGGDGFMLQSFHQSK 57 (264) Q Consensus 35 ~~~Dlii~iGGDGT~L~a~~~~~ 57 (264) .++|+||.+|| |..+-+++-.. T Consensus 87 ~~~D~IiavGG-Gs~iD~aK~va 108 (386) T 1rrm_A 87 SGADYLIAIGG-GSPQDTCKAIG 108 (386) T ss_dssp HTCSEEEEEES-HHHHHHHHHHH T ss_pred CCCCEEEECCC-CCCCHHHHHHH T ss_conf 58887997688-64104899999 No 49 >3fse_A Two-domain protein containing DJ-1/THIJ/PFPI- like and ferritin-like domains; YP_324989.1, structural genomics; HET: MSE CSX; 1.90A {Anabaena variabilis atcc 29413} Probab=75.67 E-value=3.9 Score=19.57 Aligned_cols=39 Identities=21% Similarity=0.274 Sum_probs=31.8 Q ss_pred CHHHCCEEEEECCCHH--------HHHHHHHHHHCCCEEEEECCCCC Q ss_conf 8455779999879548--------99999997412872994153433 Q gi|254780754|r 33 TSEEADVIVVLGGDGF--------MLQSFHQSKEYDKPIYGMNCGSV 71 (264) Q Consensus 33 ~~~~~Dlii~iGGDGT--------~L~a~~~~~~~~~PilGIn~G~l 71 (264) ..+++|++|+-||.|. ++..++.+...++++.+|-.|.. T Consensus 70 ~~~dyDaLIIPGG~~~~~~~~d~~l~~lIr~~~~~gk~I~aIC~G~~ 116 (365) T 3fse_A 70 IASEFDAVVIPGGMAPDKMRRNPNTVRFVQEAMEQGKLVAAVCHGPQ 116 (365) T ss_dssp CGGGCSEEEECCBTHHHHHTTCHHHHHHHHHHHHTTCEEEEETTTHH T ss_pred CCCCCCEEEECCCCCHHHHCCCHHHHHHHHHHHHCCCEEEEECHHHH T ss_conf 81248289988985576653286889999999984987988557899 No 50 >1wl8_A GMP synthase [glutamine-hydrolyzing] subunit A; transferase, gatases, riken structural genomics/proteomics initiative, RSGI; 1.45A {Pyrococcus horikoshii} SCOP: c.23.16.1 PDB: 2d7j_A Probab=75.54 E-value=3.4 Score=20.01 Aligned_cols=64 Identities=17% Similarity=0.306 Sum_probs=42.6 Q ss_pred EEEEEEECCCHHHHHHHHHHHHHCCC--------CCHH-----HCCEEEEECCCH-----HHHHHHHHHHHCCCEEEEEC Q ss_conf 05999955998999999999987078--------8845-----577999987954-----89999999741287299415 Q gi|254780754|r 6 QKIHFKASNAKKAQEAYDKFVKIYGN--------STSE-----EADVIVVLGGDG-----FMLQSFHQSKEYDKPIYGMN 67 (264) Q Consensus 6 ~ki~i~~~~~~~a~~~~~~l~~~~~~--------~~~~-----~~Dlii~iGGDG-----T~L~a~~~~~~~~~PilGIn 67 (264) |.|.++.+...-...+.+.+.+. +. ...+ ++|-++.-||++ ......+.....++|+|||- T Consensus 1 mmI~iiD~g~~ft~ni~~~l~~l-G~~~~i~p~~~~~~~~~~~~~~gv~~sgg~~~~~~~~~~~~i~~~~~~~~PilGIC 79 (189) T 1wl8_A 1 MMIVIMDNGGQYVHRIWRTLRYL-GVETKIIPNTTPLEEIKAMNPKGIIFSGGPSLENTGNCEKVLEHYDEFNVPILGIC 79 (189) T ss_dssp CEEEEEECSCTTHHHHHHHHHHT-TCEEEEEETTCCHHHHHHTCCSEEEECCCSCTTCCTTHHHHHHTGGGTCSCEEEET T ss_pred CEEEEEECCCCHHHHHHHHHHHC-CCEEEEECCCCCHHHHHHHCCCEEEECCCCCCCCCCCHHHHHHHHHHCCCCEEEEE T ss_conf 98999979984899999999978-99289996999889998318997875899878654664999999985599689984 Q ss_pred CCC Q ss_conf 343 Q gi|254780754|r 68 CGS 70 (264) Q Consensus 68 ~G~ 70 (264) .|. T Consensus 80 lG~ 82 (189) T 1wl8_A 80 LGH 82 (189) T ss_dssp HHH T ss_pred HHH T ss_conf 213 No 51 >1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A Probab=75.42 E-value=4 Score=19.53 Aligned_cols=82 Identities=10% Similarity=0.212 Sum_probs=48.2 Q ss_pred EEEEEECCCHHHHHHHHHHHHHCCC-----CCH---------HHCCEEEEE----CCCHH-HHHHHHHHHHCCCEEEEEC Q ss_conf 5999955998999999999987078-----884---------557799998----79548-9999999741287299415 Q gi|254780754|r 7 KIHFKASNAKKAQEAYDKFVKIYGN-----STS---------EEADVIVVL----GGDGF-MLQSFHQSKEYDKPIYGMN 67 (264) Q Consensus 7 ki~i~~~~~~~a~~~~~~l~~~~~~-----~~~---------~~~Dlii~i----GGDGT-~L~a~~~~~~~~~PilGIn 67 (264) ||-++.++..-+..+...+.. .+- .+. ..+|+++.= |+||. +++..+.. ..+|++-+- T Consensus 5 ~ILiVdDd~~~~~~l~~~L~~-~g~~v~~a~~~~~al~~l~~~~~dlii~D~~lP~~~g~e~~~~~~~~--~~~pii~lt 81 (123) T 1xhf_A 5 HILIVEDELVTRNTLKSIFEA-EGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLLARELREQ--ANVALMFLT 81 (123) T ss_dssp EEEEECSCHHHHHHHHHHHHT-TTCEEEEESSHHHHHHHHHHSCCSEEEECSSCSSSCHHHHHHHHHHH--CCCEEEEEE T ss_pred EEEEEECCHHHHHHHHHHHHH-CCCEEEEECCHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHC--CCCCEEEEE T ss_conf 999996999999999999998-79999998999999999970899999996899984499999999856--999789999 Q ss_pred -------------CCCCCCCCCCCCHHHHHHHHHHCC Q ss_conf -------------343320104458789998664201 Q gi|254780754|r 68 -------------CGSVGFLMNEYCIENLVERLSVAV 91 (264) Q Consensus 68 -------------~G~lGFL~~~~~~~~~~~~l~~~~ 91 (264) .|--+||+-++..+++...+.... T Consensus 82 ~~~~~~~~~~a~~~Ga~d~l~KP~~~~~L~~~v~~~l 118 (123) T 1xhf_A 82 GRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLL 118 (123) T ss_dssp SCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHH T ss_pred ECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH T ss_conf 3599999999998498888869899999999999998 No 52 >3efe_A THIJ/PFPI family protein; structural genomics, csgid, center for structural genomics of infectious diseases, chaperone; 2.30A {Bacillus anthracis} Probab=73.71 E-value=2.8 Score=20.55 Aligned_cols=38 Identities=16% Similarity=0.313 Sum_probs=30.9 Q ss_pred HHHCCEEEEECCCHH-------HHHHHHHHHHCCCEEEEECCCCC Q ss_conf 455779999879548-------99999997412872994153433 Q gi|254780754|r 34 SEEADVIVVLGGDGF-------MLQSFHQSKEYDKPIYGMNCGSV 71 (264) Q Consensus 34 ~~~~Dlii~iGGDGT-------~L~a~~~~~~~~~PilGIn~G~l 71 (264) +++.|++++.||++. ++..++.+...++++.+|-+|.. T Consensus 72 ~~~~D~liipGG~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~ 116 (212) T 3efe_A 72 LESKDLLILPGGTTWSEEIHQPILERIGQALKIGTIVAAICGATD 116 (212) T ss_dssp CCTTCEEEECCCSCTTSGGGHHHHHHHHHHHHHTCEEEEETHHHH T ss_pred HHHCCEEEECCCCCHHHCCCHHHHHHHHHHHHHCCEEEEECCHHH T ss_conf 624999998899731110699999999999880999998651569 No 53 >3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus} Probab=73.32 E-value=4.5 Score=19.21 Aligned_cols=87 Identities=15% Similarity=0.251 Sum_probs=46.4 Q ss_pred CCE-EEEEEECCCHHHHHHHHHHHHH-CCC---CC---------HHHCCEEEEE----CCCHH-HHHHHHHHHH-CCCEE Q ss_conf 650-5999955998999999999987-078---88---------4557799998----79548-9999999741-28729 Q gi|254780754|r 4 NIQ-KIHFKASNAKKAQEAYDKFVKI-YGN---ST---------SEEADVIVVL----GGDGF-MLQSFHQSKE-YDKPI 63 (264) Q Consensus 4 ~~~-ki~i~~~~~~~a~~~~~~l~~~-~~~---~~---------~~~~Dlii~i----GGDGT-~L~a~~~~~~-~~~Pi 63 (264) .|| ||.++. +++...+..+.+.+. |.. .+ ...+|+|++= |.||. +++.+|.... ..+|| T Consensus 2 smkprILiVD-D~~~~r~~l~~~L~~~~~v~~a~~g~eal~~l~~~~pdliilD~~mP~~dG~el~~~ir~~~~~~~iPi 80 (133) T 3nhm_A 2 SLKPKVLIVE-NSWTMRETLRLLLSGEFDCTTAADGASGLQQALAHPPDVLISDVNMDGMDGYALCGHFRSEPTLKHIPV 80 (133) T ss_dssp ---CEEEEEC-SCHHHHHHHHHHHTTTSEEEEESSHHHHHHHHHHSCCSEEEECSSCSSSCHHHHHHHHHHSTTTTTCCE T ss_pred CCCCEEEEEE-CCHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCCCCE T ss_conf 9999799994-989999999999978998999899999999998479999997599999999999999982888899878 Q ss_pred EEECC------------CCCCCCCCCCCHHHHHHHHHHCC Q ss_conf 94153------------43320104458789998664201 Q gi|254780754|r 64 YGMNC------------GSVGFLMNEYCIENLVERLSVAV 91 (264) Q Consensus 64 lGIn~------------G~lGFL~~~~~~~~~~~~l~~~~ 91 (264) +-+.. |--+||+-++.++.+.+.+.... T Consensus 81 I~lT~~~~~~~~~a~~~ga~~yl~KP~~~~~L~~~i~~~l 120 (133) T 3nhm_A 81 IFVSGYAPRTEGPADQPVPDAYLVKPVKPPVLIAQLHALL 120 (133) T ss_dssp EEEESCCC-----TTSCCCSEEEESSCCHHHHHHHHHHHH T ss_pred EEEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH T ss_conf 9970788499999987799789989999999999999999 No 54 >2vpi_A GMP synthase; guanine monophosphate synthetase, phosphoprotein, GMP synthetase, GMP biosynthesis, glutamine amidotransferase, ligase, cytoplasm; 2.40A {Homo sapiens} Probab=73.28 E-value=2.1 Score=21.35 Aligned_cols=65 Identities=12% Similarity=0.206 Sum_probs=43.2 Q ss_pred EEEEEEECCCHHHHHHHHHHHHHCC--C-----CC-----HHHCCEEEEECCCHHHHHHHH-----HHHHCCCEEEEECC Q ss_conf 0599995599899999999998707--8-----88-----455779999879548999999-----97412872994153 Q gi|254780754|r 6 QKIHFKASNAKKAQEAYDKFVKIYG--N-----ST-----SEEADVIVVLGGDGFMLQSFH-----QSKEYDKPIYGMNC 68 (264) Q Consensus 6 ~ki~i~~~~~~~a~~~~~~l~~~~~--~-----~~-----~~~~Dlii~iGGDGT~L~a~~-----~~~~~~~PilGIn~ 68 (264) +||.++..-.+.++.+++.+.+.-- + .. ..++|-||.-||-|.....-. .....++|||||=. T Consensus 25 ~~I~iiDfGsq~~~lI~R~lrelgv~~eI~p~~~~~~~i~~~~~dgIIlSgGP~~~~~~~~~~~~~~~~~~~~PILGICl 104 (218) T 2vpi_A 25 GAVVILDAGAQYGKVIDRRVRELFVQSEIFPLETPAFAIKEQGFRAIIISGGPNSVYAEDAPWFDPAIFTIGKPVLGICY 104 (218) T ss_dssp TCEEEEECSTTTTHHHHHHHHHTTCCEEEECTTCCHHHHHHHTCSEEEEEC---------CCCCCGGGGTSSCCEEEETH T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHCCCCEEEEHH T ss_conf 98999989964889999998716966999889999899985398989990999970124333110999838998787179 Q ss_pred CC Q ss_conf 43 Q gi|254780754|r 69 GS 70 (264) Q Consensus 69 G~ 70 (264) |+ T Consensus 105 G~ 106 (218) T 2vpi_A 105 GM 106 (218) T ss_dssp HH T ss_pred HH T ss_conf 89 No 55 >1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural genomics, JCSG, protein structure initiative, PSI; HET: NAP; 1.78A {Thermotoga maritima MSB8} SCOP: e.22.1.2 Probab=73.28 E-value=4.5 Score=19.20 Aligned_cols=63 Identities=21% Similarity=0.356 Sum_probs=37.2 Q ss_pred CEEEEEEECCCH-HH----HHHHHHHHHH------CCC---C-------------CHHHCCEEEEECCCHHHHHHHHHHH Q ss_conf 505999955998-99----9999999987------078---8-------------8455779999879548999999974 Q gi|254780754|r 5 IQKIHFKASNAK-KA----QEAYDKFVKI------YGN---S-------------TSEEADVIVVLGGDGFMLQSFHQSK 57 (264) Q Consensus 5 ~~ki~i~~~~~~-~a----~~~~~~l~~~------~~~---~-------------~~~~~Dlii~iGGDGT~L~a~~~~~ 57 (264) .+|+.+++++.- +. .++.+.|.+. |+. + ...++|+||.+|| |..+-+++-.. T Consensus 43 ~kkvliVt~~~~~~~~g~~~~v~~~L~~~gi~~~~f~~v~~~pt~~~v~~~~~~~~~~~~D~IIavGG-GS~iD~AKaia 121 (407) T 1vlj_A 43 IRKVLFLYGGGSIKKNGVYDQVVDSLKKHGIEWVEVSGVKPNPVLSKVHEAVEVAKKEKVEAVLGVGG-GSVVDSAKAVA 121 (407) T ss_dssp CCEEEEEECSSHHHHSSHHHHHHHHHHHTTCEEEEECCCCSSCBHHHHHHHHHHHHHTTCSEEEEEES-HHHHHHHHHHH T ss_pred CCEEEEEECCCHHHHCCHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEECCC-CCHHHHHHHHH T ss_conf 98589998875788752999999999865993999857079999999999999997459978995499-63415688899 Q ss_pred H-------------------CCCEEEEECC Q ss_conf 1-------------------2872994153 Q gi|254780754|r 58 E-------------------YDKPIYGMNC 68 (264) Q Consensus 58 ~-------------------~~~PilGIn~ 68 (264) - ..+|++.|-+ T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~lP~i~iPT 151 (407) T 1vlj_A 122 AGALYEGDIWDAFIGKYQIEKALPIFDVLT 151 (407) T ss_dssp HHTTCSSCGGGGGGTSCCCCCCCCEEEEEC T ss_pred HHHHCCCCHHHHHCCCCCCCCCCCEEEECC T ss_conf 987513404776336655577898667538 No 56 >3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structure initiative, PSI-2; 2.00A {Colwellia psychrerythraea 34H} Probab=72.43 E-value=4.7 Score=19.08 Aligned_cols=92 Identities=16% Similarity=0.249 Sum_probs=52.3 Q ss_pred CCCCCE---EEEEEECCCHHHHHHHHH-HHHHCCC------CCH---------HHCCEEEEE----CCCHH-HHHHHHHH Q ss_conf 987650---599995599899999999-9987078------884---------557799998----79548-99999997 Q gi|254780754|r 1 MDRNIQ---KIHFKASNAKKAQEAYDK-FVKIYGN------STS---------EEADVIVVL----GGDGF-MLQSFHQS 56 (264) Q Consensus 1 m~~~~~---ki~i~~~~~~~a~~~~~~-l~~~~~~------~~~---------~~~Dlii~i----GGDGT-~L~a~~~~ 56 (264) |..+++ |+.++ ++++...++... |.+.... ... ..+|+|++= |.||. +++.+|.. T Consensus 1 ms~~~~n~~~ILiV-DD~~~~~~~l~~~L~~~~~~~~v~~a~~g~eAl~~~~~~~pDlillD~~mP~~dG~el~~~ir~~ 79 (143) T 3cnb_A 1 MSLNVKNDFSILII-EDDKEFADMLTQFLENLFPYAKIKIAYNPFDAGDLLHTVKPDVVMLDLMMVGMDGFSICHRIKST 79 (143) T ss_dssp --------CEEEEE-CSCHHHHHHHHHHHHHHCTTCEEEEECSHHHHHHHHHHTCCSEEEEETTCTTSCHHHHHHHHHTS T ss_pred CCCCCCCCCEEEEE-ECCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHC T ss_conf 99887899999999-19999999999999827898089998999999999972799999980888999869999999847 Q ss_pred H-HCCCEEEEECC-------------CCCCCCCCCCCHHHHHHHHHHCCCC Q ss_conf 4-12872994153-------------4332010445878999866420124 Q gi|254780754|r 57 K-EYDKPIYGMNC-------------GSVGFLMNEYCIENLVERLSVAVEC 93 (264) Q Consensus 57 ~-~~~~PilGIn~-------------G~lGFL~~~~~~~~~~~~l~~~~~~ 93 (264) . ..++||+-+.. |--+||+-+++.+.+.+.+.+.... T Consensus 80 ~~~~~ipvI~lt~~~~~~~~~~~~~~Ga~~yl~KP~~~~~L~~~i~~~l~~ 130 (143) T 3cnb_A 80 PATANIIVIAMTGALTDDNVSRIVALGAETCFGKPLNFTLLEKTIKQLVEQ 130 (143) T ss_dssp TTTTTSEEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHT T ss_pred CCCCCCEEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHH T ss_conf 888998499998489989999999769989998989999999999999971 No 57 >3crn_A Response regulator receiver domain protein, CHEY- like; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1} Probab=72.33 E-value=4.7 Score=19.06 Aligned_cols=87 Identities=13% Similarity=0.194 Sum_probs=54.2 Q ss_pred CCEEEEEEECCCHHHHHHHHHHHHHCCC-----CC---------HHHCCEEEE----ECCCHH-HHHHHHHHHHCCCEEE Q ss_conf 6505999955998999999999987078-----88---------455779999----879548-9999999741287299 Q gi|254780754|r 4 NIQKIHFKASNAKKAQEAYDKFVKIYGN-----ST---------SEEADVIVV----LGGDGF-MLQSFHQSKEYDKPIY 64 (264) Q Consensus 4 ~~~ki~i~~~~~~~a~~~~~~l~~~~~~-----~~---------~~~~Dlii~----iGGDGT-~L~a~~~~~~~~~Pil 64 (264) .|+||.++.++..-...+...|.. .+. .. .+.+|++++ =|+||. +++.++.. ..++|++ T Consensus 2 smkrILiVDDd~~~~~~l~~~L~~-~g~~v~~a~~~~~al~~l~~~~~dlvllD~~mp~~~G~el~~~lr~~-~~~~piI 79 (132) T 3crn_A 2 SLKRILIVDDDTAILDSTKQILEF-EGYEVEIAATAGEGLAKIENEFFNLALFXIKLPDMEGTELLEKAHKL-RPGMKKI 79 (132) T ss_dssp -CCEEEEECSCHHHHHHHHHHHHH-TTCEEEEESSHHHHHHHHHHSCCSEEEECSBCSSSBHHHHHHHHHHH-CTTSEEE T ss_pred CCCEEEEEECCHHHHHHHHHHHHH-CCCEEEECCCHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHH-CCCCCEE T ss_conf 988899995999999999999998-69979970999999999985799999970448996089999999984-8999899 Q ss_pred EEC-------------CCCCCCCCCCCCHHHHHHHHHHCCC Q ss_conf 415-------------3433201044587899986642012 Q gi|254780754|r 65 GMN-------------CGSVGFLMNEYCIENLVERLSVAVE 92 (264) Q Consensus 65 GIn-------------~G~lGFL~~~~~~~~~~~~l~~~~~ 92 (264) -+- .|--+||.-+++++++.+.+.+... T Consensus 80 ~lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~L~ 120 (132) T 3crn_A 80 MVTGYASLENSVFSLNAGADAYIMKPVNPRDLLEKIKEKLD 120 (132) T ss_dssp EEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHH T ss_pred EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH T ss_conf 99765999999999987998999897999999999999999 No 58 >2o6l_A UDP-glucuronosyltransferase 2B7; drug metabolism, rossman, MAD, enzyme, nucleotide binding, sugar,UDP-glucuronosyltransferase, UGT; 1.80A {Homo sapiens} Probab=72.17 E-value=2.2 Score=21.17 Aligned_cols=25 Identities=4% Similarity=-0.055 Sum_probs=21.4 Q ss_pred ECCEEEEECCCCHHHHHHHCCCEEE Q ss_conf 0350798226650446752298177 Q gi|254780754|r 151 VCDGLVVSTPIGSTAYNFSALGPIL 175 (264) Q Consensus 151 ~~DGvivSTptGSTAY~lSaGGpIv 175 (264) ++|.+|---..||+.-++.+|=|.+ T Consensus 86 ~~~~~I~HGG~~t~~eal~~GvP~l 110 (170) T 2o6l_A 86 KTRAFITHGGANGIYEAIYHGIPMV 110 (170) T ss_dssp TEEEEEECCCHHHHHHHHHHTCCEE T ss_pred CCEEEEECCCCHHHHHHHHCCCCEE T ss_conf 5018986277302436774277878 No 59 >1kq3_A Glycerol dehydrogenase; structural genomics, joint center FO structural genomics, JCSG, protein structure initiative, PS oxidoreductase; 1.50A {Thermotoga maritima} SCOP: e.22.1.2 Probab=71.82 E-value=4.9 Score=18.99 Aligned_cols=33 Identities=33% Similarity=0.517 Sum_probs=27.2 Q ss_pred HHCCEEEEECCCHHHHHHHHHHH-HCCCEEEEECC Q ss_conf 55779999879548999999974-12872994153 Q gi|254780754|r 35 EEADVIVVLGGDGFMLQSFHQSK-EYDKPIYGMNC 68 (264) Q Consensus 35 ~~~Dlii~iGGDGT~L~a~~~~~-~~~~PilGIn~ 68 (264) +++|+||.+|| |+.+-+++... ....|++.|-+ T Consensus 93 ~~~D~IIavGG-Gs~iD~aK~ia~~~~~Pli~IPT 126 (376) T 1kq3_A 93 EETDVVVGIGG-GKTLDTAKAVAYKLKKPVVIVPT 126 (376) T ss_dssp TTCCEEEEEES-HHHHHHHHHHHHHTTCCEEEEES T ss_pred HCCCEEEEECC-CHHHHHHHHHHHCCCCCCEEECC T ss_conf 09998999678-52112018888424798357567 No 60 >2vrn_A Protease I, DR1199; cysteine sulfenic acid, DJ-1/THIJ/PFPI superfamily, hydrolase, stress response; 2.15A {Deinococcus radiodurans} Probab=71.81 E-value=4.9 Score=18.99 Aligned_cols=39 Identities=18% Similarity=0.227 Sum_probs=30.8 Q ss_pred CHHHCCEEEEECCCH---------HHHHHHHHHHHCCCEEEEECCCCC Q ss_conf 845577999987954---------899999997412872994153433 Q gi|254780754|r 33 TSEEADVIVVLGGDG---------FMLQSFHQSKEYDKPIYGMNCGSV 71 (264) Q Consensus 33 ~~~~~Dlii~iGGDG---------T~L~a~~~~~~~~~PilGIn~G~l 71 (264) .++++|.+++-||-+ .++..++.+...++||.+|-.|.. T Consensus 72 ~~~~yDaliipGG~~~~~~l~~~~~l~~~l~~~~~~~k~i~aiC~G~~ 119 (190) T 2vrn_A 72 QVSDYDGLLLPGGTVNPDKLRLEEGAMKFVRDMYDAGKPIAAICHGPW 119 (190) T ss_dssp CGGGCSEEEECCCTHHHHHHTTCHHHHHHHHHHHHTTCCEEEC-CTTH T ss_pred CHHHCEEEEECCCCCCHHHHCCCHHHHHHHHHHHHCCCCCCCCCHHHH T ss_conf 974764999268776221210288999999998752774003342899 No 61 >1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan biosynthesis, glutamine amidotransferase, allosteric interaction, lyase; 2.50A {Sulfolobus solfataricus} SCOP: c.23.16.1 Probab=71.47 E-value=5 Score=18.94 Aligned_cols=65 Identities=12% Similarity=0.125 Sum_probs=37.9 Q ss_pred CEEEEEEECCCHHHHHHHHHHHHHCCC---------CCHH-----HCCEEEEECCCHHH--------HHHHHHHHHCCCE Q ss_conf 505999955998999999999987078---------8845-----57799998795489--------9999997412872 Q gi|254780754|r 5 IQKIHFKASNAKKAQEAYDKFVKIYGN---------STSE-----EADVIVVLGGDGFM--------LQSFHQSKEYDKP 62 (264) Q Consensus 5 ~~ki~i~~~~~~~a~~~~~~l~~~~~~---------~~~~-----~~Dlii~iGGDGT~--------L~a~~~~~~~~~P 62 (264) |+.+-++.+-..=...+...|.+ ++. ...+ ++|.++.-||.|.- ......+...++| T Consensus 1 ~~~~liiD~~dsft~Nl~~~l~~-lG~~~~v~~~d~~~~~~~~~~~~~gvilsgGp~~p~~~~~~~~~~~i~~~~~~~~P 79 (195) T 1qdl_B 1 MDLTLIIDNYDSFVYNIAQIVGE-LGSYPIVIRNDEISIKGIERIDPDRLIISPGPGTPEKREDIGVSLDVIKYLGKRTP 79 (195) T ss_dssp CCEEEEEECSCSSHHHHHHHHHH-TTCEEEEEETTTSCHHHHHHHCCSEEEECCCSSCTTSHHHHTTHHHHHHHHTTTSC T ss_pred CCEEEEEECCCCHHHHHHHHHHH-CCCEEEEEECCCCCHHHHHHCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHCCCCC T ss_conf 98899997887179999999986-89927998089899999986198979988999974334334430899998558998 Q ss_pred EEEECCCC Q ss_conf 99415343 Q gi|254780754|r 63 IYGMNCGS 70 (264) Q Consensus 63 ilGIn~G~ 70 (264) +|||-.|+ T Consensus 80 iLGIClG~ 87 (195) T 1qdl_B 80 ILGVCLGH 87 (195) T ss_dssp EEEETHHH T ss_pred EEEECHHH T ss_conf 89982607 No 62 >3jzd_A Iron-containing alcohol dehydrogenase; YP_298327.1, putative alcohol dehedrogenase, structural genomics; HET: MSE NAD PG4 P6G PGE; 2.10A {Ralstonia eutropha JMP134} Probab=71.23 E-value=3.2 Score=20.11 Aligned_cols=33 Identities=27% Similarity=0.287 Sum_probs=26.6 Q ss_pred HHCCEEEEECCCHHHHHHHHHHH-HCCCEEEEECC Q ss_conf 55779999879548999999974-12872994153 Q gi|254780754|r 35 EEADVIVVLGGDGFMLQSFHQSK-EYDKPIYGMNC 68 (264) Q Consensus 35 ~~~Dlii~iGGDGT~L~a~~~~~-~~~~PilGIn~ 68 (264) .++|+||.+|| |..+-+++... ...+|++.|-+ T Consensus 88 ~~~D~IiavGG-Gs~iD~aK~ia~~~~~P~i~vPT 121 (358) T 3jzd_A 88 AGADCAVAVGG-GSTTGLGKAIALETGMPIVAIPT 121 (358) T ss_dssp HTCSEEEEEES-HHHHHHHHHHHHHHCCCEEEEEC T ss_pred CCCCEEEEECC-CCCCCCCCCEEEECCCCEECCCC T ss_conf 49998999688-45456541125404586412565 No 63 >3iv7_A Alcohol dehydrogenase IV; NP_602249.1, iron-containing alcohol dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum} Probab=70.96 E-value=3.1 Score=20.21 Aligned_cols=33 Identities=24% Similarity=0.384 Sum_probs=25.5 Q ss_pred HHCCEEEEECCCHHHHHHHHHHH-HCCCEEEEECC Q ss_conf 55779999879548999999974-12872994153 Q gi|254780754|r 35 EEADVIVVLGGDGFMLQSFHQSK-EYDKPIYGMNC 68 (264) Q Consensus 35 ~~~Dlii~iGGDGT~L~a~~~~~-~~~~PilGIn~ 68 (264) +++|+||.+|| |..+-+++... ....|++-|-+ T Consensus 87 ~~~D~IiavGG-GsviD~aK~ia~~~~~P~i~iPT 120 (364) T 3iv7_A 87 NEIDLLVCVGG-GSTIGLAKAIAMTTALPIVAIPT 120 (364) T ss_dssp TTCCEEEEEES-HHHHHHHHHHHHHHCCCEEEEEC T ss_pred CCCCEEEEECC-CHHHHHHHHHEECCCCCEEEECC T ss_conf 59998999458-16754214211116798788537 No 64 >3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora} Probab=70.22 E-value=5.3 Score=18.76 Aligned_cols=33 Identities=15% Similarity=0.229 Sum_probs=16.7 Q ss_pred HHCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCC Q ss_conf 55779999879548999999974128729941534 Q gi|254780754|r 35 EEADVIVVLGGDGFMLQSFHQSKEYDKPIYGMNCG 69 (264) Q Consensus 35 ~~~Dlii~iGGDGT~L~a~~~~~~~~~PilGIn~G 69 (264) ..+|++++-... ..-+...+...++|.+.+... T Consensus 101 ~~pD~vi~d~~~--~~~~~~~a~~~~~P~v~~~~~ 133 (402) T 3ia7_A 101 NPPDLVVYDVFP--FIAGRLLAARWDRPAVRLTGG 133 (402) T ss_dssp CCCSEEEEESTT--HHHHHHHHHHHTCCEEEEESS T ss_pred CCCCEEEECCCC--HHHHHHHHHHHCCCEEEEEEC T ss_conf 498689626740--027999999808987999722 No 65 >3cg0_A Response regulator receiver modulated diguanylate cyclase with PAS/PAC sensor; signal receiver domain; 2.15A {Desulfovibrio desulfuricans subsp} Probab=70.13 E-value=5.3 Score=18.75 Aligned_cols=87 Identities=15% Similarity=0.272 Sum_probs=51.6 Q ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHCCC------CCH---------HHCCEEEEE----CC-CH-HHHHHHHHHHHCCC Q ss_conf 76505999955998999999999987078------884---------557799998----79-54-89999999741287 Q gi|254780754|r 3 RNIQKIHFKASNAKKAQEAYDKFVKIYGN------STS---------EEADVIVVL----GG-DG-FMLQSFHQSKEYDK 61 (264) Q Consensus 3 ~~~~ki~i~~~~~~~a~~~~~~l~~~~~~------~~~---------~~~Dlii~i----GG-DG-T~L~a~~~~~~~~~ 61 (264) .++.+|.++. +.+...+..+.+.+.++- ... +.+|++++- +| || .+++..+. ..++ T Consensus 7 ~~~~~ILvVD-D~~~~~~~l~~~L~~~G~~v~~~a~~~~eal~~~~~~~~dlvi~D~~mp~~~dG~~l~~~lr~--~~~~ 83 (140) T 3cg0_A 7 DDLPGVLIVE-DGRLAAATLRIQLESLGYDVLGVFDNGEEAVRCAPDLRPDIALVDIMLCGALDGVETAARLAA--GCNL 83 (140) T ss_dssp -CCCEEEEEC-CBHHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHCCSEEEEESSCCSSSCHHHHHHHHHH--HSCC T ss_pred CCCCEEEEEE-CCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHH--CCCC T ss_conf 9999899997-999999999999998799899997899999999982799889997678767989999999985--7999 Q ss_pred EEEEECC-------------CCCCCCCCCCCHHHHHHHHHHCCC Q ss_conf 2994153-------------433201044587899986642012 Q gi|254780754|r 62 PIYGMNC-------------GSVGFLMNEYCIENLVERLSVAVE 92 (264) Q Consensus 62 PilGIn~-------------G~lGFL~~~~~~~~~~~~l~~~~~ 92 (264) |++-+.. |--+||.-++..+.+...+..+.. T Consensus 84 piI~lt~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~l~ 127 (140) T 3cg0_A 84 PIIFITSSQDVETFQRAKRVNPFGYLAKPVAADTLHRSIEMAIH 127 (140) T ss_dssp CEEEEECCCCHHHHHHHHTTCCSEEEEESCCHHHHHHHHHHHHH T ss_pred CEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH T ss_conf 68999668999999999987999899798999999999999999 No 66 >3cne_A Putative protease I; structural genomics, PSI-2, MCSG, protein structure initiative, midwest center for structural genomics; HET: FMN; 1.99A {Bacteroides thetaiotaomicron vpi-5482} Probab=69.08 E-value=5.6 Score=18.61 Aligned_cols=37 Identities=24% Similarity=0.347 Sum_probs=30.8 Q ss_pred HHHCCEEEEECCCH--------------HHHHHHHHHHHCCCEEEEECCCC Q ss_conf 45577999987954--------------89999999741287299415343 Q gi|254780754|r 34 SEEADVIVVLGGDG--------------FMLQSFHQSKEYDKPIYGMNCGS 70 (264) Q Consensus 34 ~~~~Dlii~iGGDG--------------T~L~a~~~~~~~~~PilGIn~G~ 70 (264) .+++|.+|.-||++ .++..++.+...++++.+|-.|. T Consensus 64 ~~~~D~liipGG~~~~~~~~~~~~~~~~~l~~~l~~~~~~g~~i~aiC~g~ 114 (175) T 3cne_A 64 EDEFDALVFSCGDAVPVFQQYANQPYNVDLMEVIKTFGEKGKMMIGHCAGA 114 (175) T ss_dssp GGGCSEEEEECCTTGGGGGGCTTCHHHHHHHHHHHHHHHTTCEEEEETTHH T ss_pred CCCCCEEEECCCCCCHHCCCCCCCCCCHHHHHHHHHHHHCCCEEEEECCHH T ss_conf 567788999997770122655444369999999999998499899988205 No 67 >1ydh_A AT5G11950; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 2.15A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4d_A Probab=68.78 E-value=5.3 Score=18.78 Aligned_cols=63 Identities=16% Similarity=0.103 Sum_probs=37.8 Q ss_pred CCCCEEEEEEECCC----HHHHHHHHHHHHHCCCCCHHHCCEEEEE-CCC-HHHHHHHHHHHHCCCEEEEECCC Q ss_conf 87650599995599----8999999999987078884557799998-795-48999999974128729941534 Q gi|254780754|r 2 DRNIQKIHFKASNA----KKAQEAYDKFVKIYGNSTSEEADVIVVL-GGD-GFMLQSFHQSKEYDKPIYGMNCG 69 (264) Q Consensus 2 ~~~~~ki~i~~~~~----~~a~~~~~~l~~~~~~~~~~~~Dlii~i-GGD-GT~L~a~~~~~~~~~PilGIn~G 69 (264) -.+|+|+.++.+.. +.-.+.++++-+.+.. -.+-++. ||. |.|=.+++-+...+-.++||... T Consensus 6 ~~k~k~V~VF~gS~~~~~~~~~~~a~~lG~~La~-----~g~~lV~GGG~~GlMgava~ga~~~gG~viGV~~~ 74 (216) T 1ydh_A 6 RSRFRKICVFCGSHSGHREVFSDAAIELGNELVK-----RKIDLVYGGGSVGLMGLISRRVYEGGLHVLGIIPK 74 (216) T ss_dssp CCSCSEEEEECCSCCCSSHHHHHHHHHHHHHHHH-----TTCEEEECCCSSHHHHHHHHHHHHTTCCEEEEEEG T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHH-----CCCEEEECCCCHHHHHHHHHHHHHCCCCEEEECCH T ss_conf 0568539998757899693899999999999998-----79949989981899999998787479955763502 No 68 >3okf_A 3-dehydroquinate synthase; structural genomics, center for structural genomics of infec diseases, csgid, NAD, lyase; HET: NAD; 2.50A {Vibrio cholerae o1 biovar eltor} Probab=68.74 E-value=4.8 Score=19.05 Aligned_cols=36 Identities=14% Similarity=0.197 Sum_probs=24.5 Q ss_pred CCHHHCCEEEEECCCHHHHHHHHHHH---HCCCEEEEECC Q ss_conf 88455779999879548999999974---12872994153 Q gi|254780754|r 32 STSEEADVIVVLGGDGFMLQSFHQSK---EYDKPIYGMNC 68 (264) Q Consensus 32 ~~~~~~Dlii~iGGDGT~L~a~~~~~---~~~~PilGIn~ 68 (264) ...+..|+++++|| |...-.+..+. ..++|++-|-+ T Consensus 119 ~~~~r~~~viaiGG-G~v~DlagfvAs~y~RGi~~i~iPT 157 (390) T 3okf_A 119 HNYSRDVVVIALGG-GVIGDLVGFAAACYQRGVDFIQIPT 157 (390) T ss_dssp TTCCTTCEEEEEES-HHHHHHHHHHHHHBTTCCEEEEEEC T ss_pred HCCCCCCEEEEECC-CCCHHHHHHHHHHHHCCCCEEECCC T ss_conf 22687713797179-7203188999999828975564043 No 69 >3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A* Probab=67.88 E-value=5.9 Score=18.46 Aligned_cols=84 Identities=12% Similarity=0.263 Sum_probs=42.2 Q ss_pred CEEEEEEECCCHHHHHHHHHHHHHCCC-----CC---------HHHCCEEEE----ECCCHH-HHHHHHHHHHCCCEEEE Q ss_conf 505999955998999999999987078-----88---------455779999----879548-99999997412872994 Q gi|254780754|r 5 IQKIHFKASNAKKAQEAYDKFVKIYGN-----ST---------SEEADVIVV----LGGDGF-MLQSFHQSKEYDKPIYG 65 (264) Q Consensus 5 ~~ki~i~~~~~~~a~~~~~~l~~~~~~-----~~---------~~~~Dlii~----iGGDGT-~L~a~~~~~~~~~PilG 65 (264) |+||.++.++..-.+.+...|.+ .+- .+ ...+|++++ =|.||. +++.+|.. ...+||+- T Consensus 1 M~rILiVDDd~~~~~~l~~~L~~-~g~~v~~a~~g~~al~~~~~~~~dlvilD~~mP~~~G~e~~~~ir~~-~~~~pii~ 78 (116) T 3a10_A 1 MKRILVVDDEPNIRELLKEELQE-EGYEIDTAENGEEALKKFFSGNYDLVILDIEMPGISGLEVAGEIRKK-KKDAKIIL 78 (116) T ss_dssp CCEEEEECSCHHHHHHHHHHHHH-TTCEEEEESSHHHHHHHHHHSCCSEEEECSCCSSSCHHHHHHHHHHH-CTTCCEEE T ss_pred CCEEEEEECCHHHHHHHHHHHHH-CCCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHC-CCCCCEEE T ss_conf 98899992999999999999998-79999998999999999984799989983688999999999999843-99897999 Q ss_pred ECC-----------CCCCCCCCCCCHHHHHHHHHHC Q ss_conf 153-----------4332010445878999866420 Q gi|254780754|r 66 MNC-----------GSVGFLMNEYCIENLVERLSVA 90 (264) Q Consensus 66 In~-----------G~lGFL~~~~~~~~~~~~l~~~ 90 (264) +.. |--+||.-++..+++.+.+.++ T Consensus 79 lt~~~~~~~~~~~~Ga~~~l~KP~~~~~L~~~v~~~ 114 (116) T 3a10_A 79 LTAYSHYRSDMSSWAADEYVVKSFNFDELKEKVKKL 114 (116) T ss_dssp EESCGGGGGCGGGGGSSEEEECCSSTHHHHHHHHHH T ss_pred EECCCCHHHHHHHCCCCEEEECCCCHHHHHHHHHHH T ss_conf 989789999998269988998989999999999997 No 70 >1sg6_A Pentafunctional AROM polypeptide; shikimate pathway, aromatic amino acid biosynthesis, DHQS, open form, form J, domain movement, cyclase; HET: NAD; 1.70A {Emericella nidulans} SCOP: e.22.1.1 PDB: 1nr5_A* 1nrx_A* 1nua_A 1nva_A* 1nvb_A* 1nvd_A* 1nve_A* 1nvf_A* 1dqs_A* Probab=66.55 E-value=6.3 Score=18.29 Aligned_cols=34 Identities=15% Similarity=0.133 Sum_probs=24.5 Q ss_pred HHHCCEEEEECCCHHHHHHHHHHH---HCCCEEEEECC Q ss_conf 455779999879548999999974---12872994153 Q gi|254780754|r 34 SEEADVIVVLGGDGFMLQSFHQSK---EYDKPIYGMNC 68 (264) Q Consensus 34 ~~~~Dlii~iGGDGT~L~a~~~~~---~~~~PilGIn~ 68 (264) ....|++|.+|| |+++-.+.... ..++|++-|=+ T Consensus 103 ~~r~d~iIaiGG-G~v~D~ak~~A~~y~rgi~~i~vPT 139 (393) T 1sg6_A 103 CGRDTVVIALGG-GVIGDLTGFVASTYMRGVRYVQVPT 139 (393) T ss_dssp CCTTCEEEEEES-HHHHHHHHHHHHHGGGCCEEEEEEC T ss_pred CCCCCEEEEECC-CCHHHHHHHHHHHHHCCCCEEEECC T ss_conf 788766999558-5032456777777626874354214 No 71 >1s3l_A Hypothetical protein MJ0936; phosphodiesterase, nuclease, structural genomics, BSGC structure funded by NIH; 2.40A {Methanocaldococcus jannaschii} SCOP: d.159.1.7 PDB: 1s3m_A 1s3n_A 2ahd_A Probab=66.00 E-value=6.4 Score=18.23 Aligned_cols=59 Identities=17% Similarity=0.253 Sum_probs=35.8 Q ss_pred CCCEEEEEEECCCHH--H-HHHHHHHHHHCCCCCHHHCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCC Q ss_conf 765059999559989--9-9999999987078884557799998795489999999741287299415343 Q gi|254780754|r 3 RNIQKIHFKASNAKK--A-QEAYDKFVKIYGNSTSEEADVIVVLGGDGFMLQSFHQSKEYDKPIYGMNCGS 70 (264) Q Consensus 3 ~~~~ki~i~~~~~~~--a-~~~~~~l~~~~~~~~~~~~Dlii~iGGDGT~L~a~~~~~~~~~PilGIn~G~ 70 (264) +-.|||+++++-.-. + +++++.+.+ +++|.++..| |-.--.....+.....|++.|. |+ T Consensus 23 ~~~MKI~iiSDiHgn~~ale~vl~~~~~-------~~~D~vi~lG-Div~~~~~~~l~~~~~~~~~V~-GN 84 (190) T 1s3l_A 23 QGHMKIGIMSDTHDHLPNIRKAIEIFND-------ENVETVIHCG-DFVSLFVIKEFENLNANIIATY-GN 84 (190) T ss_dssp ---CEEEEECCCTTCHHHHHHHHHHHHH-------SCCSEEEECS-CCCSTHHHHHGGGCSSEEEEEC-CT T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHH-------CCCCEEEECC-CCCCHHHHHHHHHCCCCEEEEE-CC T ss_conf 6875899998089996999999999975-------5999999878-8389899999873476089972-76 No 72 >1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2 PDB: 1vhd_A* Probab=65.13 E-value=5.7 Score=18.54 Aligned_cols=32 Identities=22% Similarity=0.249 Sum_probs=22.8 Q ss_pred HCCEEEEECCCHHHHHHHHHHH-------------------HCCCEEEEECC Q ss_conf 5779999879548999999974-------------------12872994153 Q gi|254780754|r 36 EADVIVVLGGDGFMLQSFHQSK-------------------EYDKPIYGMNC 68 (264) Q Consensus 36 ~~Dlii~iGGDGT~L~a~~~~~-------------------~~~~PilGIn~ 68 (264) ++|+||.+|| |+.+-+++... ...+|++.|-+ T Consensus 98 ~~D~IvavGG-Gs~iD~aK~va~~~~~~~~~~~~~~~~~~~~~~~p~i~IPT 148 (371) T 1o2d_A 98 SFDFVVGLGG-GSPMDFAKAVAVLLKEKDLSVEDLYDREKVKHWLPVVEIPT 148 (371) T ss_dssp CCSEEEEEES-HHHHHHHHHHHHHTTSTTCCSGGGGCGGGCCCCCCEEEEEC T ss_pred CCCEEEEECC-CCCCHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCEEEECC T ss_conf 9988998289-76120899999998579971443057655346788688237 No 73 >3mgk_A Intracellular protease/amidase related enzyme (THIJ family); amidotranferase-like, structural genomics, PSI; 2.00A {Clostridium acetobutylicum} Probab=64.97 E-value=4.6 Score=19.17 Aligned_cols=38 Identities=21% Similarity=0.304 Sum_probs=29.8 Q ss_pred CHHHCCEEEEECCCHH--------HHHHHHHHHHCCCEEEEECCCC Q ss_conf 8455779999879548--------9999999741287299415343 Q gi|254780754|r 33 TSEEADVIVVLGGDGF--------MLQSFHQSKEYDKPIYGMNCGS 70 (264) Q Consensus 33 ~~~~~Dlii~iGGDGT--------~L~a~~~~~~~~~PilGIn~G~ 70 (264) +.+.+|++++.||.|. ++..++.+.....++.+|-+|. T Consensus 62 d~~~~D~livpGG~~~~~~~~~~~l~~~Lr~~~~~~~~i~aic~G~ 107 (211) T 3mgk_A 62 DENIEKILFVPGGSGTREKVNDDNFINFIGNMVKESKYIISVCTGS 107 (211) T ss_dssp CSSSEEEEEECCSTHHHHHTTCHHHHHHHHHHHHHCSEEEECTTHH T ss_pred CCCCCCEEEECCCCCHHHHCCCHHHHHHHHHHHHHCCEEEECCHHH T ss_conf 3562799998788774544389999999998875245885001035 No 74 >2ab0_A YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase fold, unknown function; 1.10A {Escherichia coli} SCOP: c.23.16.2 Probab=64.74 E-value=6.4 Score=18.25 Aligned_cols=36 Identities=22% Similarity=0.345 Sum_probs=29.5 Q ss_pred HHCCEEEEECCCH---------HHHHHHHHHHHCCCEEEEECCCC Q ss_conf 5577999987954---------89999999741287299415343 Q gi|254780754|r 35 EEADVIVVLGGDG---------FMLQSFHQSKEYDKPIYGMNCGS 70 (264) Q Consensus 35 ~~~Dlii~iGGDG---------T~L~a~~~~~~~~~PilGIn~G~ 70 (264) +++|++++-||.+ .++..++.+...++++.+|-+|- T Consensus 65 ~d~D~liiPGG~~~~~~l~~~~~l~~~lr~~~~~gk~i~aiC~gp 109 (205) T 2ab0_A 65 GEYDVIVLPGGIKGAECFRDSTLLVETVKQFHRSGRIVAAICAAP 109 (205) T ss_dssp SCCSEEEECCCHHHHHHHHHCHHHHHHHHHHHHTTCEEEEETHHH T ss_pred CCCCEEEECCCCHHHHHHHHCHHHHHHHHHHHHHCCEEEECCCCH T ss_conf 687389989997179886129999999999987353045014618 No 75 >3hbf_A Flavonoid 3-O-glucosyltransferase; glycosyltransferase, GT-B fold, GT1, phenylpropanoid metabolism; HET: UDP MYC; 2.10A {Medicago truncatula} PDB: 3hbj_A* Probab=64.56 E-value=3.9 Score=19.58 Aligned_cols=28 Identities=11% Similarity=-0.123 Sum_probs=10.8 Q ss_pred HCCEEEEECCCHHHHHHHHHHHHCCCEEEEE Q ss_conf 5779999879548999999974128729941 Q gi|254780754|r 36 EADVIVVLGGDGFMLQSFHQSKEYDKPIYGM 66 (264) Q Consensus 36 ~~Dlii~iGGDGT~L~a~~~~~~~~~PilGI 66 (264) ..|+++.-.=..-.+..++ ..++|.+.. T Consensus 117 ~~d~vi~d~~~~~~~~~a~---~~~~p~~~~ 144 (454) T 3hbf_A 117 NITCLVTDAFFWFGADLAE---EMHAKWVPL 144 (454) T ss_dssp CCCEEEEETTCTTHHHHHH---HTTCEEEEE T ss_pred CCEEEEECCCCHHHHHHHH---HHCCCEEEE T ss_conf 9759997473168999999---968985997 No 76 >3ce9_A Glycerol dehydrogenase; NP_348253.1, 3-dehydroquinate synthase, structural genomics, joint center for structural genomics; HET: MSE; 2.37A {Clostridium acetobutylicum atcc 824} Probab=64.52 E-value=6.9 Score=18.05 Aligned_cols=64 Identities=13% Similarity=0.204 Sum_probs=38.7 Q ss_pred CCEEEEEEECCCHHH---HHHHHHHHHHC------C---C-----------CCHHHCCEEEEECCCHHHHHHHHHHH-HC Q ss_conf 650599995599899---99999999870------7---8-----------88455779999879548999999974-12 Q gi|254780754|r 4 NIQKIHFKASNAKKA---QEAYDKFVKIY------G---N-----------STSEEADVIVVLGGDGFMLQSFHQSK-EY 59 (264) Q Consensus 4 ~~~ki~i~~~~~~~a---~~~~~~l~~~~------~---~-----------~~~~~~Dlii~iGGDGT~L~a~~~~~-~~ 59 (264) ..+|+.+++++.-.. .++.+.|.+.. . + ...+++|+||.+|| |..+-+++... .. T Consensus 33 g~~k~liVtd~~~~~~~~~~v~~~L~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~D~IIavGG-Gsv~D~aK~vA~~~ 111 (354) T 3ce9_A 33 NFKRVSLYFGEGIYELFGETIEKSIKSSNIEIEAVETVKNIDFDEIGTNAFKIPAEVDALIGIGG-GKAIDAVKYMAFLR 111 (354) T ss_dssp TCSEEEEEEETTHHHHHHHHHHHHHHTTTCEEEEEEEECCCBHHHHHHHHTTSCTTCCEEEEEES-HHHHHHHHHHHHHH T ss_pred CCCEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECC-CCCCCCHHHHHHHC T ss_conf 98959999896788999999999998779989998589999989999999986526888999469-74221036899861 Q ss_pred CCEEEEECC Q ss_conf 872994153 Q gi|254780754|r 60 DKPIYGMNC 68 (264) Q Consensus 60 ~~PilGIn~ 68 (264) ++|++.|-+ T Consensus 112 ~ip~i~VPT 120 (354) T 3ce9_A 112 KLPFISVPT 120 (354) T ss_dssp TCCEEEEES T ss_pred CCEEEEECC T ss_conf 880578546 No 77 >2jzc_A UDP-N-acetylglucosamine transferase subunit ALG13; rossmann-like fold, endoplasmic reticulum, glycosyltransferase, structural genomics; NMR {Saccharomyces cerevisiae} Probab=63.66 E-value=2.6 Score=20.69 Aligned_cols=28 Identities=14% Similarity=0.178 Sum_probs=17.6 Q ss_pred ECCEEEEECCCCHHHHHHHCCCEE-EEEC Q ss_conf 035079822665044675229817-7408 Q gi|254780754|r 151 VCDGLVVSTPIGSTAYNFSALGPI-LPLE 178 (264) Q Consensus 151 ~~DGvivSTptGSTAY~lSaGGpI-v~p~ 178 (264) ++|=||---.+||..=.+.+|=|+ +-|+ T Consensus 132 ~adlvIshaG~gti~e~l~~~kp~i~vP~ 160 (224) T 2jzc_A 132 YSDLVISHAGTGSILDSLRLNKPLIVCVN 160 (224) T ss_dssp HCSCEEESSCHHHHHHHHHTTCCCCEECC T ss_pred HCCEEEECCCHHHHHHHHHHCCCEEEEEC T ss_conf 23688856864799999996899899837 No 78 >2nv0_A Glutamine amidotransferase subunit PDXT; 3-layer(ABA) sandwich, rossmann fold, glutaminase; 1.73A {Bacillus subtilis} SCOP: c.23.16.1 PDB: 1r9g_A 2nv2_B* Probab=63.43 E-value=7.2 Score=17.92 Aligned_cols=66 Identities=17% Similarity=0.264 Sum_probs=38.3 Q ss_pred CEEEEEEEC-CCH-HHHHHHHHHHHH----CCCCCHHHCCEEEEECCCHH----------HHHHHHHHHHCCCEEEEECC Q ss_conf 505999955-998-999999999987----07888455779999879548----------99999997412872994153 Q gi|254780754|r 5 IQKIHFKAS-NAK-KAQEAYDKFVKI----YGNSTSEEADVIVVLGGDGF----------MLQSFHQSKEYDKPIYGMNC 68 (264) Q Consensus 5 ~~ki~i~~~-~~~-~a~~~~~~l~~~----~~~~~~~~~Dlii~iGGDGT----------~L~a~~~~~~~~~PilGIn~ 68 (264) |+||++++- -+. +..+.++++-.. -..++.+++|.+|.=||-.+ +....+.+...++|+|||=. T Consensus 1 m~kIGvl~~~Gn~~s~~~al~~~g~~~~~i~~~~~l~~~d~lIlPGg~~~~~~~~~~~~~~~~~i~~~~~~g~pilGICl 80 (196) T 2nv0_A 1 MLTIGVLGLQGAVREHIHAIEACGAAGLVVKRPEQLNEVDGLILPGGESTTMRRLIDTYQFMEPLREFAAQGKPMFGTCA 80 (196) T ss_dssp CCEEEEECSSSCCHHHHHHHHHTTCEEEEECSGGGGGGCSEEEECCSCHHHHHHHHHHTTCHHHHHHHHHTTCCEEEETH T ss_pred CCEEEEEECCCCHHHHHHHHHHCCCCEEEECCHHHHHCCCEEEECCCCCHHHHHHHHHCCCHHHHHHHHHCCCCEEEECH T ss_conf 94999994588299999999988992999999899825998998996007888875436828999999964998899801 Q ss_pred CC Q ss_conf 43 Q gi|254780754|r 69 GS 70 (264) Q Consensus 69 G~ 70 (264) |. T Consensus 81 G~ 82 (196) T 2nv0_A 81 GL 82 (196) T ss_dssp HH T ss_pred HH T ss_conf 12 No 79 >1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphatase, transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli K12} SCOP: c.23.16.1 c.26.2.1 d.52.2.1 Probab=63.42 E-value=2 Score=21.48 Aligned_cols=70 Identities=20% Similarity=0.263 Sum_probs=47.8 Q ss_pred CCCCC--EEEEEEECCCHHHHHHHHHHHHH--CCC-----CCH-----HHCCEEEEECCCHHHHHH-----HHHHHHCCC Q ss_conf 98765--05999955998999999999987--078-----884-----557799998795489999-----999741287 Q gi|254780754|r 1 MDRNI--QKIHFKASNAKKAQEAYDKFVKI--YGN-----STS-----EEADVIVVLGGDGFMLQS-----FHQSKEYDK 61 (264) Q Consensus 1 m~~~~--~ki~i~~~~~~~a~~~~~~l~~~--~~~-----~~~-----~~~Dlii~iGGDGT~L~a-----~~~~~~~~~ 61 (264) |+.++ .||.++..-.+-++-+++.+.+. |.+ ... .+++-||.=||=|+...+ .....+.++ T Consensus 1 M~~~~~~~kIlIlDfGsQytqLIARrvRElgVysEI~p~d~~~eeI~~~~P~GIILSGGP~SV~d~~~p~~~~~i~~~~i 80 (525) T 1gpm_A 1 MTENIHKHRILILDFGSQYTQLVARRVRELGVYCELWAWDVTEAQIRDFNPSGIILSGGPESTTEENSPRAPQYVFEAGV 80 (525) T ss_dssp --CCTTSSEEEEEECSCTTHHHHHHHHHHTTCEEEEEESCCCHHHHHHHCCSEEEECCCSSCTTSTTCCCCCGGGGTSSS T ss_pred CCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHCCCCEEEECCCCCCCCCCCCCCCCHHHHCCCC T ss_conf 99776659089998996399999999997398489981999999997179999998999997666899643899981999 Q ss_pred EEEEECCCC Q ss_conf 299415343 Q gi|254780754|r 62 PIYGMNCGS 70 (264) Q Consensus 62 PilGIn~G~ 70 (264) |||||=.|+ T Consensus 81 PILGICyG~ 89 (525) T 1gpm_A 81 PVFGVCYGM 89 (525) T ss_dssp CEEEETHHH T ss_pred CEEEECHHH T ss_conf 899988899 No 80 >2fex_A Conserved hypothetical protein; structural genomics, protein structure initiative, PSI, midwest center for structural genomics; 1.70A {Agrobacterium tumefaciens str} SCOP: c.23.16.2 Probab=63.37 E-value=7.2 Score=17.91 Aligned_cols=39 Identities=15% Similarity=0.327 Sum_probs=30.9 Q ss_pred CHHHCCEEEEECCCHH-------HHHHHHHHHHCCCEEEEECCCCC Q ss_conf 8455779999879548-------99999997412872994153433 Q gi|254780754|r 33 TSEEADVIVVLGGDGF-------MLQSFHQSKEYDKPIYGMNCGSV 71 (264) Q Consensus 33 ~~~~~Dlii~iGGDGT-------~L~a~~~~~~~~~PilGIn~G~l 71 (264) .+++.|++++.||.+. ++..++.+...++++.+|-.|.. T Consensus 60 ~~~~yD~lvipGG~~~~~~~~~~l~~~lr~~~~~~~~i~aiC~g~~ 105 (188) T 2fex_A 60 DPVDIDALVIPGGLSWEKGTAADLGGLVKRFRDRDRLVAGICAAAS 105 (188) T ss_dssp CTTTCSEEEECCBSHHHHTCCCCCHHHHHHHHHTTCEEEEETHHHH T ss_pred CHHHCCEEEECCCCCHHCCCCHHHHHHHHHHHHHCCEEEEECHHHH T ss_conf 9625588996698711003799999999999973998998287889 No 81 >1xah_A Sadhqs, 3-dehydroquinate synthase; shikimate pathway, aromatic amino acid biosynthesis, open form, form B, domain movement, cyclase; HET: NAD; 2.20A {Staphylococcus aureus} PDB: 1xag_A* 1xai_A* 1xaj_A* 1xal_A* Probab=62.68 E-value=7.4 Score=17.84 Aligned_cols=46 Identities=13% Similarity=0.080 Sum_probs=28.5 Q ss_pred HHHHHHHHHHHCCCCCHHHCCEEEEECCCHHHHHHHHHHH---HCCCEEE Q ss_conf 9999999998707888455779999879548999999974---1287299 Q gi|254780754|r 18 AQEAYDKFVKIYGNSTSEEADVIVVLGGDGFMLQSFHQSK---EYDKPIY 64 (264) Q Consensus 18 a~~~~~~l~~~~~~~~~~~~Dlii~iGGDGT~L~a~~~~~---~~~~Pil 64 (264) +.+..+++.+.+.+...+..|+||++|| |+..-.+.... ..+++++ T Consensus 72 s~~~~~~i~~~l~~~~~~r~d~iiavGG-G~v~D~akfvA~~~~rgi~~i 120 (354) T 1xah_A 72 TFEQYQETLEYILSHHVTRNTAIIAVGG-GATGDFAGFVAATLLRGVHFI 120 (354) T ss_dssp SHHHHHHHHHHHHTTCCCTTCEEEEEES-HHHHHHHHHHHHHBTTCCEEE T ss_pred CHHHHHHHHHHHHHCCCCCCCEEEEECC-CCCHHHHHHHHHHHCCCCCEE T ss_conf 9899999999999769898761799658-730225988899863797426 No 82 >1qo0_D AMIR; binding protein, gene regulator, receptor; 2.25A {Pseudomonas aeruginosa} SCOP: c.23.1.3 Probab=62.44 E-value=7.5 Score=17.81 Aligned_cols=85 Identities=8% Similarity=0.026 Sum_probs=50.2 Q ss_pred EEEEEECCCHHHHHHHHHHHHHCCC----------CCHHHCCEEEE---ECCCHHHHHHHHHHHHCCCEEEEECC----- Q ss_conf 5999955998999999999987078----------88455779999---87954899999997412872994153----- Q gi|254780754|r 7 KIHFKASNAKKAQEAYDKFVKIYGN----------STSEEADVIVV---LGGDGFMLQSFHQSKEYDKPIYGMNC----- 68 (264) Q Consensus 7 ki~i~~~~~~~a~~~~~~l~~~~~~----------~~~~~~Dlii~---iGGDGT~L~a~~~~~~~~~PilGIn~----- 68 (264) ++.++ ++.+...........+.+. .-...+|+|+. ..|.|...-+...-...++||+.+-. T Consensus 14 ~vLvv-dd~~~~~~~l~~~L~~~G~~v~~~~~~~~al~~~~D~vl~D~~mp~~~~~~~~~~~~~~~~~pvI~lt~~~~~~ 92 (196) T 1qo0_D 14 QVLVL-NPPGEVSDALVLQLIRIGCSVRQCWPPPEAFDVPVDVVFTSIFQNRHHDEIAALLAAGTPRTTLVALVEYESPA 92 (196) T ss_dssp EEEEE-SCTTHHHHHHHHHHHHHTCEEEEECSCCSSCSSCCSEEEEECCSSTHHHHHHHHHHHSCTTCEEEEEECCCSHH T ss_pred EEEEE-ECCHHHHHHHHHHHHHCCCEEECCCCHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHCCCCCCEEEEECCCCHH T ss_conf 69999-57999999999999986998871699799848899989984899998599999998649999889984579999 Q ss_pred --------CCCCCCCCCCCHHHHHHHHHHCCC Q ss_conf --------433201044587899986642012 Q gi|254780754|r 69 --------GSVGFLMNEYCIENLVERLSVAVE 92 (264) Q Consensus 69 --------G~lGFL~~~~~~~~~~~~l~~~~~ 92 (264) |-.+||.-++.++.+...+..... T Consensus 93 ~~~~a~~~Ga~~yl~KP~~~~~L~~~l~~~~~ 124 (196) T 1qo0_D 93 VLSQIIELECHGVITQPLDAHRVLPVLVSARR 124 (196) T ss_dssp HHHHHHHHTCSEEEESSCCGGGHHHHHHHHHH T ss_pred HHHHHHHCCCCEEECCCCCHHHHHHHHHHHHH T ss_conf 99999985999865599998999999999999 No 83 >2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate, glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A {Streptomyces antibioticus} Probab=62.20 E-value=7.6 Score=17.78 Aligned_cols=32 Identities=16% Similarity=0.043 Sum_probs=20.7 Q ss_pred HHCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCC Q ss_conf 55779999879548999999974128729941534 Q gi|254780754|r 35 EEADVIVVLGGDGFMLQSFHQSKEYDKPIYGMNCG 69 (264) Q Consensus 35 ~~~Dlii~iGGDGT~L~a~~~~~~~~~PilGIn~G 69 (264) ..+|++++-......+.+++. ..+|++.++.. T Consensus 108 ~~pDvvi~~~~~~~~~~~a~~---~~ip~v~~~~~ 139 (424) T 2iya_A 108 DRPDLIVYDIASWPAPVLGRK---WDIPFVQLSPT 139 (424) T ss_dssp SCCSEEEEETTCTHHHHHHHH---HTCCEEEEESS T ss_pred CCCCEEEECCCCHHHHHHHHH---HCCCEEEEECC T ss_conf 599689825545599999998---36985999525 No 84 >3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative; 2.04A {Staphylococcus aureus} Probab=61.41 E-value=7.8 Score=17.69 Aligned_cols=90 Identities=14% Similarity=0.311 Sum_probs=57.2 Q ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHCCC-------CCH---------HHCCEEEE----ECCCHH-HHHHHHHHHHCCC Q ss_conf 76505999955998999999999987078-------884---------55779999----879548-9999999741287 Q gi|254780754|r 3 RNIQKIHFKASNAKKAQEAYDKFVKIYGN-------STS---------EEADVIVV----LGGDGF-MLQSFHQSKEYDK 61 (264) Q Consensus 3 ~~~~ki~i~~~~~~~a~~~~~~l~~~~~~-------~~~---------~~~Dlii~----iGGDGT-~L~a~~~~~~~~~ 61 (264) ++|.||.++ ++.+...+..+.+.+..+. .+. ..+|+++. =|.||. +++.++.. ..++ T Consensus 1 M~m~~ILIv-DD~~~~r~~l~~~L~~~~~~~vv~~a~~g~eal~~~~~~~pDlvllDi~mP~~~G~e~~~~ir~~-~~~~ 78 (133) T 3b2n_A 1 MSLTSLIIA-EDQNMLRQAMVQLIKLHGDFEILADTDNGLDAMKLIEEYNPNVVILDIEMPGMTGLEVLAEIRKK-HLNI 78 (133) T ss_dssp --CEEEEEE-CSCHHHHHHHHHHHHHHSSEEEEEEESCHHHHHHHHHHHCCSEEEECSSCSSSCHHHHHHHHHHT-TCSC T ss_pred CCCCEEEEE-ECCHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHH-CCCC T ss_conf 999999999-29999999999999868996999998999999999985699999995778999889999999986-8999 Q ss_pred EEEEECC-------------CCCCCCCCCCCHHHHHHHHHHCCCCC Q ss_conf 2994153-------------43320104458789998664201243 Q gi|254780754|r 62 PIYGMNC-------------GSVGFLMNEYCIENLVERLSVAVECT 94 (264) Q Consensus 62 PilGIn~-------------G~lGFL~~~~~~~~~~~~l~~~~~~~ 94 (264) ||+=+.. |-.|||.-+++.+++.+++.++..++ T Consensus 79 ~vI~lT~~~~~~~~~~a~~~Ga~~yl~Kp~~~~~L~~~I~~v~~g~ 124 (133) T 3b2n_A 79 KVIIVTTFKRPGYFEKAVVNDVDAYVLKERSIEELVETINKVNNGE 124 (133) T ss_dssp EEEEEESCCCHHHHHHHHHTTCSEEEETTSCHHHHHHHHHHHHC-- T ss_pred CEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCC T ss_conf 6899967899999999998799789979999999999999999718 No 85 >2c1x_A UDP-glucose flavonoid 3-O glycosyltransferase; WINE, catalysis, glycosylation; HET: UDP B3P; 1.9A {Vitis vinifera} SCOP: c.87.1.10 PDB: 2c1z_A* 2c9z_A* Probab=61.35 E-value=4.9 Score=18.99 Aligned_cols=30 Identities=13% Similarity=0.145 Sum_probs=14.2 Q ss_pred HCCEEEEECCCHHHHHHHHHHHHCCCEEEEECC Q ss_conf 577999987954899999997412872994153 Q gi|254780754|r 36 EADVIVVLGGDGFMLQSFHQSKEYDKPIYGMNC 68 (264) Q Consensus 36 ~~Dlii~iGGDGT~L~a~~~~~~~~~PilGIn~ 68 (264) .+|++|+ |.+..-+...+...++|.+...+ T Consensus 112 ~~D~vi~---D~~~~~~~~ia~~~~~p~~~~~~ 141 (456) T 2c1x_A 112 PVSCLVA---DAFIWFAADMAAEMGVAWLPFWT 141 (456) T ss_dssp CCCEEEE---ETTSTTHHHHHHHHTCEEEEEEC T ss_pred CCEEEEE---CCCCHHHHHHHHHHCCCCEECCC T ss_conf 9769997---78337899999995898410124 No 86 >2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structure initiative; 1.80A {Bacteroides fragilis YCH46} Probab=61.05 E-value=7.9 Score=17.65 Aligned_cols=88 Identities=22% Similarity=0.315 Sum_probs=53.2 Q ss_pred CCEEEEEEECCCHHHHHHHHHHHHHCCC-----CC---------HHHCCEEEEE---------CCCHH-HHHHHHHHHHC Q ss_conf 6505999955998999999999987078-----88---------4557799998---------79548-99999997412 Q gi|254780754|r 4 NIQKIHFKASNAKKAQEAYDKFVKIYGN-----ST---------SEEADVIVVL---------GGDGF-MLQSFHQSKEY 59 (264) Q Consensus 4 ~~~ki~i~~~~~~~a~~~~~~l~~~~~~-----~~---------~~~~Dlii~i---------GGDGT-~L~a~~~~~~~ 59 (264) .|.||.++.++ +......+.+.+..+. .. .+.+|++++= |-||. +++.++.. .. T Consensus 2 s~~~ILiVDDd-~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~dlillDl~mP~~~~~G~dGl~~l~~ir~~-~~ 79 (140) T 2qr3_A 2 SLGTIIIVDDN-KGVLTAVQLLLKNHFSKVITLSSPVSLSTVLREENPEVVLLDMNFTSGINNGNEGLFWLHEIKRQ-YR 79 (140) T ss_dssp CCCEEEEECSC-HHHHHHHHHHHTTTSSEEEEECCHHHHHHHHHHSCEEEEEEETTTTC-----CCHHHHHHHHHHH-CT T ss_pred CCCEEEEEECC-HHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHH-CC T ss_conf 99989999799-99999999999978999999899999999997279999999168877776775199999999986-89 Q ss_pred CCEEEEECC-------------CCCCCCCCCCCHHHHHHHHHHCCCC Q ss_conf 872994153-------------4332010445878999866420124 Q gi|254780754|r 60 DKPIYGMNC-------------GSVGFLMNEYCIENLVERLSVAVEC 93 (264) Q Consensus 60 ~~PilGIn~-------------G~lGFL~~~~~~~~~~~~l~~~~~~ 93 (264) ++||+-+.. |-.+||+-+++.+++.+.+.++... T Consensus 80 ~ipvI~lT~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~al~~ 126 (140) T 2qr3_A 80 DLPVVLFTAYADIDLAVRGIKEGASDFVVKPWDNQKLLETLLNAASQ 126 (140) T ss_dssp TCCEEEEEEGGGHHHHHHHHHTTCCEEEEESCCHHHHHHHHHHHHTC T ss_pred CCCEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHH T ss_conf 98289997899999999999869978997989999999999999997 No 87 >2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae} Probab=60.95 E-value=8 Score=17.64 Aligned_cols=90 Identities=14% Similarity=0.170 Sum_probs=50.7 Q ss_pred CCCCCEEEEEEECCCHHHHHHHHHHHHHCCCC-------CH---------HHCCEEEEE----CCCHH-HHHHHHHHHHC Q ss_conf 98765059999559989999999999870788-------84---------557799998----79548-99999997412 Q gi|254780754|r 1 MDRNIQKIHFKASNAKKAQEAYDKFVKIYGNS-------TS---------EEADVIVVL----GGDGF-MLQSFHQSKEY 59 (264) Q Consensus 1 m~~~~~ki~i~~~~~~~a~~~~~~l~~~~~~~-------~~---------~~~Dlii~i----GGDGT-~L~a~~~~~~~ 59 (264) |..+-.|+.++ ++.+...+....+.+.++.. +. ..+|+++.= |.||. +++.++... . T Consensus 5 Ms~~kirvLIV-DD~~~~r~~l~~~L~~~~~~~vv~~a~~g~eal~~l~~~~~DlvilDi~mP~~dG~el~~~ir~~~-~ 82 (143) T 2qv0_A 5 MSGEKMKVIIV-EDEFLAQQELSWLINTHSQMEIVGSFDDGLDVLKFLQHNKVDAIFLDINIPSLDGVLLAQNISQFA-H 82 (143) T ss_dssp -----CEEEEE-CSCHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHHHHCCCSEEEECSSCSSSCHHHHHHHHTTST-T T ss_pred CCCCCCEEEEE-ECCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHCC-C T ss_conf 48998889999-499999999999998689927999979999999999866999899878888899899999999549-9 Q ss_pred CCEEEEE-----------CCCCCCCCCCCCCHHHHHHHHHHCCC Q ss_conf 8729941-----------53433201044587899986642012 Q gi|254780754|r 60 DKPIYGM-----------NCGSVGFLMNEYCIENLVERLSVAVE 92 (264) Q Consensus 60 ~~PilGI-----------n~G~lGFL~~~~~~~~~~~~l~~~~~ 92 (264) .+|++=+ ..|-.+||.-+++.+.+.+.+.++.. T Consensus 83 ~~~iI~~t~~~e~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~~~ 126 (143) T 2qv0_A 83 KPFIVFITAWKEHAVEAFELEAFDYILKPYQESRIINMLQKLTT 126 (143) T ss_dssp CCEEEEEESCCTTHHHHHHTTCSEEEESSCCHHHHHHHHHHHHH T ss_pred CCEEEEEECCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH T ss_conf 98089997788999999985998899799999999999999999 No 88 >3hdv_A Response regulator; PSI-II, structural genomics, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.09A {Pseudomonas putida KT2440} Probab=60.71 E-value=8 Score=17.62 Aligned_cols=84 Identities=15% Similarity=0.260 Sum_probs=47.4 Q ss_pred EEEEEECCCHHHHHHHHHHHHHCCCC-----CH----------HHCCEEEE----ECCCHH-HHHHHHHHHHCCCEEEEE Q ss_conf 59999559989999999999870788-----84----------55779999----879548-999999974128729941 Q gi|254780754|r 7 KIHFKASNAKKAQEAYDKFVKIYGNS-----TS----------EEADVIVV----LGGDGF-MLQSFHQSKEYDKPIYGM 66 (264) Q Consensus 7 ki~i~~~~~~~a~~~~~~l~~~~~~~-----~~----------~~~Dlii~----iGGDGT-~L~a~~~~~~~~~PilGI 66 (264) +|. +.++++...+....+.+.++-. .. ..+|+|++ =|.||. +++..|......+||+-+ T Consensus 9 ~IL-iVDD~~~~r~~l~~~L~~~G~~v~~a~~~~~a~~~l~~~~~~dlii~D~~mP~~~G~el~~~ir~~~~~~~piI~l 87 (136) T 3hdv_A 9 LVL-VVDDNAVNREALILYLKSRGIDAVGADGAEEARLYLHYQKRIGLMITDLRMQPESGLDLIRTIRASERAALSIIVV 87 (136) T ss_dssp EEE-EECSCHHHHHHHHHHHHHTTCCEEEESSHHHHHHHHHHCTTEEEEEECSCCSSSCHHHHHHHHHTSTTTTCEEEEE T ss_pred EEE-EEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCCEEEEE T ss_conf 899-9979999999999999987999999899999999997579998899879899998999999999557999919999 Q ss_pred CC-------------CCCCCCCCCCCHHHHHHHHHHCC Q ss_conf 53-------------43320104458789998664201 Q gi|254780754|r 67 NC-------------GSVGFLMNEYCIENLVERLSVAV 91 (264) Q Consensus 67 n~-------------G~lGFL~~~~~~~~~~~~l~~~~ 91 (264) .. |-.+||.-++..+++.+.+.+.. T Consensus 88 T~~~~~~~~~~a~~~G~~d~l~KP~~~~~L~~~v~~~L 125 (136) T 3hdv_A 88 SGDTDVEEAVDVMHLGVVDFLLKPVDLGKLLELVNKEL 125 (136) T ss_dssp ESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHH T ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH T ss_conf 88899999999998699989989899999999999999 No 89 >1vhq_A Enhancing lycopene biosynthesis protein 2; structural genomics, unknown function; 1.65A {Escherichia coli} SCOP: c.23.16.2 PDB: 1oy1_A Probab=59.94 E-value=8.3 Score=17.53 Aligned_cols=38 Identities=24% Similarity=0.273 Sum_probs=31.5 Q ss_pred CHHHCCEEEEECCCHH-------------------HHHHHHHHHHCCCEEEEECCCC Q ss_conf 8455779999879548-------------------9999999741287299415343 Q gi|254780754|r 33 TSEEADVIVVLGGDGF-------------------MLQSFHQSKEYDKPIYGMNCGS 70 (264) Q Consensus 33 ~~~~~Dlii~iGGDGT-------------------~L~a~~~~~~~~~PilGIn~G~ 70 (264) +++++|.++.-||-|. +.+.++.+...++|+-.|=.|- T Consensus 87 ~~~dyD~lviPGG~g~~~~L~~~~~~~~~~~~~~~v~~~i~~~~~~~K~iaaIC~ap 143 (232) T 1vhq_A 87 DAAELDALIVPGGFGAAKNLSNFASLGSECTVDRELKALAQAMHQAGKPLGFMCIAP 143 (232) T ss_dssp CGGGCSEEEECCSTHHHHTSBCHHHHGGGCCBCHHHHHHHHHHHHTTCCEEEETTGG T ss_pred CHHHCCEEEECCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEECHHH T ss_conf 941288899789954288865400246433339999999999998699799988669 No 90 >2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1 Probab=59.90 E-value=8.3 Score=17.53 Aligned_cols=44 Identities=23% Similarity=0.310 Sum_probs=34.4 Q ss_pred HHCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCC Q ss_conf 55779999879548999999974128729941534332010445878999866420124 Q gi|254780754|r 35 EEADVIVVLGGDGFMLQSFHQSKEYDKPIYGMNCGSVGFLMNEYCIENLVERLSVAVEC 93 (264) Q Consensus 35 ~~~Dlii~iGGDGT~L~a~~~~~~~~~PilGIn~G~lGFL~~~~~~~~~~~~l~~~~~~ 93 (264) +.+|++|+=||-+.+|+. ..++||+-|. .+..|+..+|.++... T Consensus 62 ~~~DviISRG~ta~~Ir~-----~~~iPVVeI~----------vs~~Dil~aL~~a~~~ 105 (225) T 2pju_A 62 ERCDAIIAAGSNGAYLKS-----RLSVPVILIK----------PSGYDVLQFLAKAGKL 105 (225) T ss_dssp SCCSEEEEEHHHHHHHHT-----TCSSCEEEEC----------CCHHHHHHHHHHTTCT T ss_pred CCCCEEEECCHHHHHHHH-----HCCCCEEEEE----------CCHHHHHHHHHHHHHH T ss_conf 998699968568999998-----5899889970----------7876899999999975 No 91 >3noq_A THIJ/PFPI family protein; DJ-1 superfamily, isocyanide hydratase, isonitrIle hydratase; HET: NHE; 1.00A {Pseudomonas fluorescens} PDB: 3noo_A 3nor_A* 3nov_A Probab=59.46 E-value=8.4 Score=17.48 Aligned_cols=38 Identities=26% Similarity=0.396 Sum_probs=29.8 Q ss_pred CHHHCCEEEEECCCHH--------HHHHHHHHHHCCCEEEEECCCC Q ss_conf 8455779999879548--------9999999741287299415343 Q gi|254780754|r 33 TSEEADVIVVLGGDGF--------MLQSFHQSKEYDKPIYGMNCGS 70 (264) Q Consensus 33 ~~~~~Dlii~iGGDGT--------~L~a~~~~~~~~~PilGIn~G~ 70 (264) +.+++|++++.||.+. ++..++.......++.++.+|. T Consensus 62 ~~~~~D~liVpgg~~~~~~~~~~~l~~~l~~~~~~g~~i~~ic~G~ 107 (231) T 3noq_A 62 DCPPLDVICIPGGTGVGALMEDPQALAFIRQQAARARYVTSVSTGS 107 (231) T ss_dssp TCCCCSEEEECCSTTHHHHTTCHHHHHHHHHHHTTCSEEEEETTHH T ss_pred HCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEECCCCH T ss_conf 5673588963787654344689999999998876197896125311 No 92 >1fy2_A Aspartyl dipeptidase; serine protease, catalytic triad, strand-helix motif, hydrolase; 1.20A {Salmonella typhimurium} SCOP: c.23.16.4 PDB: 1fye_A Probab=58.96 E-value=8.6 Score=17.43 Aligned_cols=37 Identities=27% Similarity=0.451 Sum_probs=20.8 Q ss_pred HHCCEEEEECCCHHHHH----------HHHHHHHCCCEEEEECCCCC Q ss_conf 55779999879548999----------99997412872994153433 Q gi|254780754|r 35 EEADVIVVLGGDGFMLQ----------SFHQSKEYDKPIYGMNCGSV 71 (264) Q Consensus 35 ~~~Dlii~iGGDGT~L~----------a~~~~~~~~~PilGIn~G~l 71 (264) +++|+|.+-|||=..|. +++.....+.++.|...|.. T Consensus 78 ~~ad~I~~~GGn~~~l~~~l~~t~l~~~i~~~~~~G~vi~G~SAGA~ 124 (229) T 1fy2_A 78 EKAEIIIVGGGNTFQLLKESRERGLLAPMADRVKRGALYIGWSAGAN 124 (229) T ss_dssp HHCSEEEECCSCHHHHHHHHHHTTCHHHHHHHHHTTCEEEEETHHHH T ss_pred HHCCEEEECCCCHHHHHHHHHHCCHHHHHHHHHHCCCEEEEECHHHH T ss_conf 74999998898999999998738869999999875987999666776 No 93 >2acv_A Triterpene UDP-glucosyl transferase UGT71G1; glycosyltransferase; HET: UDP; 2.00A {Medicago truncatula} SCOP: c.87.1.10 PDB: 2acw_A* Probab=58.75 E-value=5.4 Score=18.69 Aligned_cols=20 Identities=10% Similarity=-0.262 Sum_probs=10.0 Q ss_pred HCCEEEEECCCHHHHHHHHH Q ss_conf 57799998795489999999 Q gi|254780754|r 36 EADVIVVLGGDGFMLQSFHQ 55 (264) Q Consensus 36 ~~Dlii~iGGDGT~L~a~~~ 55 (264) .+|+++.-.-....+..++. T Consensus 114 ~~d~iv~d~~~~~~~~~a~~ 133 (463) T 2acv_A 114 KVVGLVLDFFCVSMIDVGNE 133 (463) T ss_dssp TEEEEEEEGGGGGGHHHHHH T ss_pred CCEEEEECCCHHHHHHHHHH T ss_conf 98699983711889999999 No 94 >2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A Probab=56.92 E-value=9.3 Score=17.21 Aligned_cols=84 Identities=15% Similarity=0.342 Sum_probs=49.3 Q ss_pred EEEEEEECCCHHHHHHHHHHHHHCCC-----CC---------HHHCCEEEEE----CCCHH-HHHHHHHHHHCCCEEEEE Q ss_conf 05999955998999999999987078-----88---------4557799998----79548-999999974128729941 Q gi|254780754|r 6 QKIHFKASNAKKAQEAYDKFVKIYGN-----ST---------SEEADVIVVL----GGDGF-MLQSFHQSKEYDKPIYGM 66 (264) Q Consensus 6 ~ki~i~~~~~~~a~~~~~~l~~~~~~-----~~---------~~~~Dlii~i----GGDGT-~L~a~~~~~~~~~PilGI 66 (264) ||+.++.++..-...+...|.+ .+- .. .+.+|++++= |.||. +++.++.. ...+|++-+ T Consensus 1 mrILvVdDd~~~~~~l~~~L~~-~G~~v~~a~~~~~al~~l~~~~~dlii~D~~mp~~dG~e~~~~lr~~-~~~~pii~l 78 (121) T 2pl1_A 1 MRVLVVEDNALLRHHLKVQIQD-AGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSLIRRWRSN-DVSLPILVL 78 (121) T ss_dssp CEEEEECSCHHHHHHHHHHHHH-TTCEEEEESSHHHHHHHHHHSCCSEEEECSCCSSSCHHHHHHHHHHT-TCCSCEEEE T ss_pred CEEEEEECCHHHHHHHHHHHHH-CCCEEEEECCHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHHC-CCCCCEEEE T ss_conf 9899996899999999999998-79999998999999999645899899988999998747899999963-999818999 Q ss_pred CC-------------CCCCCCCCCCCHHHHHHHHHHCC Q ss_conf 53-------------43320104458789998664201 Q gi|254780754|r 67 NC-------------GSVGFLMNEYCIENLVERLSVAV 91 (264) Q Consensus 67 n~-------------G~lGFL~~~~~~~~~~~~l~~~~ 91 (264) -. |--+||.-+++.+++...+.... T Consensus 79 t~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~l 116 (121) T 2pl1_A 79 TARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALM 116 (121) T ss_dssp ESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHH T ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH T ss_conf 78899999999998699999979899999999999997 No 95 >2q5c_A NTRC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824} Probab=56.83 E-value=9.3 Score=17.20 Aligned_cols=76 Identities=14% Similarity=0.097 Sum_probs=47.6 Q ss_pred CCCCCEEEEEEECCCHHHHHHHHHHHHHCCC-----------------CCHHHCCEEEEECCCHHHHHHHHHHHHCCCEE Q ss_conf 9876505999955998999999999987078-----------------88455779999879548999999974128729 Q gi|254780754|r 1 MDRNIQKIHFKASNAKKAQEAYDKFVKIYGN-----------------STSEEADVIVVLGGDGFMLQSFHQSKEYDKPI 63 (264) Q Consensus 1 m~~~~~ki~i~~~~~~~a~~~~~~l~~~~~~-----------------~~~~~~Dlii~iGGDGT~L~a~~~~~~~~~Pi 63 (264) |+++ +||.+++.....+..+ .++.+..+- .-.+.+|++|+=||-..+|+. ..++|| T Consensus 1 m~~~-~kI~~iap~e~l~~l~-~~~a~~~~~~~~~~~~~l~~~~~iA~~l~~~~DVIISRGgTa~~Ir~-----~~~iPV 73 (196) T 2q5c_A 1 MSLS-LKIALISQNENLLNLF-PKLALEKNFIPITKTASLTRASKIAFGLQDEVDAIISRGATSDYIKK-----SVSIPS 73 (196) T ss_dssp -CCC-CEEEEEESCHHHHHHH-HHHHHHHTCEEEEEECCHHHHHHHHHHHTTTCSEEEEEHHHHHHHHT-----TCSSCE T ss_pred CCCC-CEEEEECCCHHHHHHH-HHHHHHCCCEEEEEEEEHHHHHHHHHHHHCCCCEEEECCHHHHHHHH-----HCCCCE T ss_conf 9875-1599987938899999-99997548756788666999999999754398799989658999998-----289977 Q ss_pred EEECCCCCCCCCCCCCHHHHHHHHHHCCCC Q ss_conf 941534332010445878999866420124 Q gi|254780754|r 64 YGMNCGSVGFLMNEYCIENLVERLSVAVEC 93 (264) Q Consensus 64 lGIn~G~lGFL~~~~~~~~~~~~l~~~~~~ 93 (264) +.|. .+..|+..+|..+... T Consensus 74 VeI~----------vs~~Dil~al~~a~~~ 93 (196) T 2q5c_A 74 ISIK----------VTRFDTMRAVYNAKRF 93 (196) T ss_dssp EEEC----------CCHHHHHHHHHHHGGG T ss_pred EEEC----------CCHHHHHHHHHHHHHH T ss_conf 9980----------7887999999999975 No 96 >3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP} Probab=56.78 E-value=9.4 Score=17.20 Aligned_cols=92 Identities=16% Similarity=0.283 Sum_probs=56.2 Q ss_pred CCCCCEEEEEEECCCHHHHHHHHHHHHHCC-C------CCH---------HHCCEEEE-E---CCCHH-HHHHHHHHHHC Q ss_conf 987650599995599899999999998707-8------884---------55779999-8---79548-99999997412 Q gi|254780754|r 1 MDRNIQKIHFKASNAKKAQEAYDKFVKIYG-N------STS---------EEADVIVV-L---GGDGF-MLQSFHQSKEY 59 (264) Q Consensus 1 m~~~~~ki~i~~~~~~~a~~~~~~l~~~~~-~------~~~---------~~~Dlii~-i---GGDGT-~L~a~~~~~~~ 59 (264) |...-.|+.++ ++.+...+..+.+.+... . .+. ..+|+++. + |.||. +++.++... . T Consensus 1 m~ms~~RVLIV-DD~~~~r~~l~~~L~~~~~~~vv~~a~~~~eal~~~~~~~pDlvllDi~mP~~~G~e~~~~ir~~~-~ 78 (153) T 3cz5_A 1 MSLSTARIMLV-DDHPIVREGYRRLIERRPGYAVVAEAADAGEAYRLYRETTPDIVVMDLTLPGPGGIEATRHIRQWD-G 78 (153) T ss_dssp ---CCEEEEEE-CSCHHHHHHHHHHHTTSTTEEEEEEESSHHHHHHHHHTTCCSEEEECSCCSSSCHHHHHHHHHHHC-T T ss_pred CCCCCCEEEEE-ECCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHC-C T ss_conf 99888779999-299999999999998589918999989999999997546996899964579987899999999858-9 Q ss_pred CCEEEEECC-------------CCCCCCCCCCCHHHHHHHHHHCCCCC Q ss_conf 872994153-------------43320104458789998664201243 Q gi|254780754|r 60 DKPIYGMNC-------------GSVGFLMNEYCIENLVERLSVAVECT 94 (264) Q Consensus 60 ~~PilGIn~-------------G~lGFL~~~~~~~~~~~~l~~~~~~~ 94 (264) .+||+-+.. |--|||.-+++.+++.+++.++..+. T Consensus 79 ~~~iivlt~~~~~~~~~~al~~Ga~~yl~Kp~~~~~L~~ai~~v~~g~ 126 (153) T 3cz5_A 79 AARILIFTMHQGSAFALKAFEAGASGYVTKSSDPAELVQAIEAILAGR 126 (153) T ss_dssp TCCEEEEESCCSHHHHHHHHHTTCSEEEETTSCTTHHHHHHHHHTTTC T ss_pred CCCEEEEEEECCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCC T ss_conf 996899981489999999998699838968999999999999998499 No 97 >1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A Probab=55.81 E-value=9.7 Score=17.10 Aligned_cols=84 Identities=20% Similarity=0.329 Sum_probs=47.1 Q ss_pred CEEEEEEECCCHHHHHHHHHHHHHCCCC-----C---------HHHCCEEEEE----CCCHH-HHHHHHHHHHCCCEEEE Q ss_conf 5059999559989999999999870788-----8---------4557799998----79548-99999997412872994 Q gi|254780754|r 5 IQKIHFKASNAKKAQEAYDKFVKIYGNS-----T---------SEEADVIVVL----GGDGF-MLQSFHQSKEYDKPIYG 65 (264) Q Consensus 5 ~~ki~i~~~~~~~a~~~~~~l~~~~~~~-----~---------~~~~Dlii~i----GGDGT-~L~a~~~~~~~~~PilG 65 (264) |.||-++.++...++-+...|. ..+-. . ...+|+|+.= |.||. +++..+. ..++|++- T Consensus 1 M~~ILiVDDd~~~~~~l~~~L~-~~g~~v~~a~~~~~al~~~~~~~~dlil~D~~mp~~~G~~l~~~ir~--~~~ipiI~ 77 (121) T 1zh2_A 1 MTNVLIVEDEQAIRRFLRTALE-GDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEFIRDLRQ--WSAVPVIV 77 (121) T ss_dssp -CEEEEECSCHHHHHHHHHHHH-TTTCEEEEESSHHHHHHHHHHHCCSEEEEESEETTEEHHHHHHHHHT--TCCCCEEE T ss_pred CCEEEEEECCHHHHHHHHHHHH-HCCCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHH--HCCCEEEE T ss_conf 9849999699999999999999-87999999888999999997179999998099999897999999997--47990999 Q ss_pred ECC-------------CCCCCCCCCCCHHHHHHHHHHCC Q ss_conf 153-------------43320104458789998664201 Q gi|254780754|r 66 MNC-------------GSVGFLMNEYCIENLVERLSVAV 91 (264) Q Consensus 66 In~-------------G~lGFL~~~~~~~~~~~~l~~~~ 91 (264) +.. |--+||+-+++.+++...+.... T Consensus 78 lt~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~l 116 (121) T 1zh2_A 78 LSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVAL 116 (121) T ss_dssp EESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHH T ss_pred EECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH T ss_conf 978599999999998699999979999999999999998 No 98 >3kht_A Response regulator; PSI-II, structural genomics, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.10A {Hahella chejuensis kctc 2396} Probab=54.95 E-value=10 Score=17.01 Aligned_cols=93 Identities=9% Similarity=0.129 Sum_probs=50.6 Q ss_pred CCCCCEEEEEEECCCHHHHHHHHHHHHHCCC-------CC---------HHHCCEEEEE----CCCH-HHHHHHHHHH-H Q ss_conf 9876505999955998999999999987078-------88---------4557799998----7954-8999999974-1 Q gi|254780754|r 1 MDRNIQKIHFKASNAKKAQEAYDKFVKIYGN-------ST---------SEEADVIVVL----GGDG-FMLQSFHQSK-E 58 (264) Q Consensus 1 m~~~~~ki~i~~~~~~~a~~~~~~l~~~~~~-------~~---------~~~~Dlii~i----GGDG-T~L~a~~~~~-~ 58 (264) |..+-+||.++. +++...++...+.+..+. .. ...+|+|+.= |.|| .+++.+|.-. . T Consensus 1 msl~~krILlVd-D~~~~~~~l~~~L~~~g~~~~v~~a~~g~~Al~~l~~~~~dliilD~~mP~~~G~el~~~ir~~~~~ 79 (144) T 3kht_A 1 MSLRSKRVLVVE-DNPDDIALIRRVLDRKDIHCQLEFVDNGAKALYQVQQAKYDLIILDIGLPIANGFEVMSAVRKPGAN 79 (144) T ss_dssp ----CEEEEEEC-CCHHHHHHHHHHHHHTTCCEEEEEESSHHHHHHHHTTCCCSEEEECTTCGGGCHHHHHHHHHSSSTT T ss_pred CCCCCCEEEEEE-CCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHCCCC T ss_conf 998899899995-8999999999999968998299998999999999971799999986999999999999999837878 Q ss_pred CCCEEEEECC-------------CCCCCCCCCC-CHHHHHHHHHHCCCCC Q ss_conf 2872994153-------------4332010445-8789998664201243 Q gi|254780754|r 59 YDKPIYGMNC-------------GSVGFLMNEY-CIENLVERLSVAVECT 94 (264) Q Consensus 59 ~~~PilGIn~-------------G~lGFL~~~~-~~~~~~~~l~~~~~~~ 94 (264) ..+||+-+.. |--+||.-++ ..+++...+......+ T Consensus 80 ~~iPiI~lS~~~~~~~~~~a~~~Ga~~~l~KP~~~~~eL~~~i~~~l~~~ 129 (144) T 3kht_A 80 QHTPIVILTDNVSDDRAKQCMAAGASSVVDKSSNNVTDFYGRIYAIFSYW 129 (144) T ss_dssp TTCCEEEEETTCCHHHHHHHHHTTCSEEEECCTTSHHHHHHHHHHHHHHH T ss_pred CCCCEEEEECCCCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHH T ss_conf 99918999888999999999986999999699999999999999999986 No 99 >3f5d_A Protein YDEA; unknow protein, PSI-II, nysgrc, structural genomics, protein structure initiative; 2.06A {Bacillus subtilis} Probab=53.65 E-value=10 Score=16.94 Aligned_cols=69 Identities=13% Similarity=0.164 Sum_probs=45.2 Q ss_pred CCCEEEEEEECCC-H--HHHHHHHHHHHHCC--------------------------CCCHHHCCEEEEECCCH------ Q ss_conf 7650599995599-8--99999999998707--------------------------88845577999987954------ Q gi|254780754|r 3 RNIQKIHFKASNA-K--KAQEAYDKFVKIYG--------------------------NSTSEEADVIVVLGGDG------ 47 (264) Q Consensus 3 ~~~~ki~i~~~~~-~--~a~~~~~~l~~~~~--------------------------~~~~~~~Dlii~iGGDG------ 47 (264) ++|||+.|+--+. . +.--+.+.+..... +..+++.|++|+.||++ T Consensus 1 m~Mkkv~~ll~d~f~d~E~~~~~~~L~~~~~~~v~~vs~~~~V~s~~Gl~i~~d~~~~~~~~~~d~lvlpGG~~~~~~~~ 80 (206) T 3f5d_A 1 MSLKKALFLILDQYADWEGVYLASALNQREDWSVHTVSLDPIVSSIGGFKTSVDYIIGLEPANFNLLVMIGGDSWSNDNK 80 (206) T ss_dssp --CEEEEEECCSSBCTTTSHHHHHHHHTSTTEEEEEEESSSEEEBTTSCEEECSEETTSSCSCCSEEEECCBSCCCCCCH T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCEEECCCCEEECCCHHHCCCCCCCEEEECCCCCCCCCCH T ss_conf 99878999967996889999999998356984999994899989579928942510212832131999278776432599 Q ss_pred HHHHHHHHHHHCCCEEEEECCCCC Q ss_conf 899999997412872994153433 Q gi|254780754|r 48 FMLQSFHQSKEYDKPIYGMNCGSV 71 (264) Q Consensus 48 T~L~a~~~~~~~~~PilGIn~G~l 71 (264) .++..++.+...+.++.+|-+|.. T Consensus 81 ~l~~~l~~~~~~~~~iaaIC~G~~ 104 (206) T 3f5d_A 81 KLLHFVKTAFQKNIPIAAICGAVD 104 (206) T ss_dssp HHHHHHHHHHHTTCCEEEETHHHH T ss_pred HHHHHHHHHHHHCCEEEECCCHHH T ss_conf 999999999860998996280159 No 100 >3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.15A {Colwellia psychrerythraea 34H} Probab=53.22 E-value=11 Score=16.84 Aligned_cols=87 Identities=9% Similarity=0.144 Sum_probs=50.1 Q ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHCCCC-------------CHHHCCEEEE----ECCCHH-HHHHHHHHHHCCCEEE Q ss_conf 765059999559989999999999870788-------------8455779999----879548-9999999741287299 Q gi|254780754|r 3 RNIQKIHFKASNAKKAQEAYDKFVKIYGNS-------------TSEEADVIVV----LGGDGF-MLQSFHQSKEYDKPIY 64 (264) Q Consensus 3 ~~~~ki~i~~~~~~~a~~~~~~l~~~~~~~-------------~~~~~Dlii~----iGGDGT-~L~a~~~~~~~~~Pil 64 (264) +.|+|+.++ ++++...+..+.+.+.++.. ..+.+|+|++ -+.||. +++.++.. ....|++ T Consensus 1 m~~~rILIV-DDd~~~~~~l~~~L~~~g~~v~a~~~~eal~~l~~~~~dlillD~~mP~~dG~el~~~lr~~-~~~~~ii 78 (135) T 3eqz_A 1 MSLNRVFIV-DDDTLTCNLLKTIVEPIFGNVEAFQHPRAFLTLSLNKQDIIILDLMMPDMDGIEVIRHLAEH-KSPASLI 78 (135) T ss_dssp --CCEEEEE-CSCHHHHHHHHHHHTTTCSCEEEESCHHHHTTSCCCTTEEEEEECCTTTTHHHHHHHHHHHT-TCCCEEE T ss_pred CCCCEEEEE-ECCHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHC-CCCCCEE T ss_conf 988999999-29999999999999978998999178999999865899999985999999899999999952-9999799 Q ss_pred EEC------------------CCCCCCCCCCCCHHHHHHHHHHCC Q ss_conf 415------------------343320104458789998664201 Q gi|254780754|r 65 GMN------------------CGSVGFLMNEYCIENLVERLSVAV 91 (264) Q Consensus 65 GIn------------------~G~lGFL~~~~~~~~~~~~l~~~~ 91 (264) =+- .|-.+||.-+++.+.+...+.+.. T Consensus 79 ils~~~~~~~~~~~~~~~~~~~g~~d~l~KP~~~~~L~~~l~~~~ 123 (135) T 3eqz_A 79 LISGYDSGVLHSAETLALSCGLNVINTFTKPINTEVLTCFLTSLS 123 (135) T ss_dssp EEESSCHHHHHHHHHHHHHTTCEEEEEEESSCCHHHHHHHHHHHS T ss_pred EEECCCCCCCHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHH T ss_conf 998357654400999999955999879979899999999999999 No 101 >3e3x_A BIPA; MCSG,PSI2, structural genomics, protein structure initiative, midwest center for structural genomics, GTP-binding; HET: MLZ MLY; 1.95A {Vibrio parahaemolyticus} Probab=53.21 E-value=11 Score=16.83 Aligned_cols=51 Identities=6% Similarity=0.060 Sum_probs=34.6 Q ss_pred EEEEEEEEEEECCEEEEEEEECCEEEEECCCC-HHHHHHH---CCCEE-EEECCCEEEE Q ss_conf 36788898766787653121035079822665-0446752---29817-7408860586 Q gi|254780754|r 131 LVQAAKLEVKVDDQVRLPELVCDGLVVSTPIG-STAYNFS---ALGPI-LPLESRHLLL 184 (264) Q Consensus 131 ~~~~~~~~v~id~~~~~~~~~~DGvivSTptG-STAY~lS---aGGpI-v~p~~~~~~i 184 (264) .+....++.+..|.. . .+-||.+||.-+| +|||++. .-|++ +.|+.++..- T Consensus 193 ~~~f~~y~p~~~g~~--~-~r~~G~lis~~~g~~~ayal~~lq~rG~lfv~Pg~~VYeG 248 (332) T 3e3x_A 193 YHTFDHYGPHXGGNI--G-QRVNGVLIANAAGKALTNALFNLQERGRLFIGHGVEVYEG 248 (332) T ss_dssp EEEEEEEEECCCCSC--S-CCCCCEEEESSCEECCHHHHHHHTTSEEESCCTTCEECTT T ss_pred EEECCCCCCCCCCCC--C-CCCCCCEEEECCCCHHHHHHHHHHHCCCEEECCCCCCCCC T ss_conf 862154034355766--8-7677533674365216889987764473888689653577 No 102 >1z2w_A Vacuolar protein sorting 29; VPS29, retromer, phosphatase, manganese, protein transport; 2.00A {Mus musculus} SCOP: d.159.1.7 PDB: 1z2x_A 3lh6_A 3lh7_A 1w24_A 2r17_A Probab=52.96 E-value=6.2 Score=18.34 Aligned_cols=64 Identities=14% Similarity=0.116 Sum_probs=36.4 Q ss_pred CCCCEEEEEEECCCH--HHHHHHHHHHHHCCCCCHHHCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCC Q ss_conf 876505999955998--999999999987078884557799998795489999999741287299415343 Q gi|254780754|r 2 DRNIQKIHFKASNAK--KAQEAYDKFVKIYGNSTSEEADVIVVLGGDGFMLQSFHQSKEYDKPIYGMNCGS 70 (264) Q Consensus 2 ~~~~~ki~i~~~~~~--~a~~~~~~l~~~~~~~~~~~~Dlii~iGGDGT~L~a~~~~~~~~~PilGIn~G~ 70 (264) +++.|||.++++..- .+..+.+.+.+.+ ..+++|.|+..|-=.. ......+.....|+.++. |+ T Consensus 7 ~~~~MkI~vISDtH~~~~~~~l~~~~~~~~---~~~~vD~iih~GDi~~-~~~~~~l~~~~~~v~~V~-GN 72 (192) T 1z2w_A 7 TRDRMLVLVLGDLHIPHRCNSLPAKFKKLL---VPGKIQHILCTGNLCT-KESYDYLKTLAGDVHIVR-GD 72 (192) T ss_dssp ----CEEEEECCCCBTTTCSSCCHHHHTTC---CTTSCSEEEECSCCBS-HHHHHHHHHHCSEEEECC-CT T ss_pred CCCCEEEEEEECCCCCCCCCHHHHHHHHHH---CCCCCCEEEECCCCCC-HHHHHHHHHCCCCEEEEE-CC T ss_conf 989829999902788986201679999985---3169999999989987-788998874187379991-68 No 103 >2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance, glycosylation, enzyme, macrolide, carbohydrate; HET: ERY UDP; 1.7A {Streptomyces antibioticus} Probab=52.84 E-value=11 Score=16.80 Aligned_cols=34 Identities=9% Similarity=-0.027 Sum_probs=22.4 Q ss_pred HHCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCC Q ss_conf 5577999987954899999997412872994153433 Q gi|254780754|r 35 EEADVIVVLGGDGFMLQSFHQSKEYDKPIYGMNCGSV 71 (264) Q Consensus 35 ~~~Dlii~iGGDGT~L~a~~~~~~~~~PilGIn~G~l 71 (264) ..+|+|++-...-..+.+++. .++|.+.+..+.. T Consensus 103 ~~pD~vi~~~~~~~~~~~a~~---~~iP~v~~~~~~~ 136 (430) T 2iyf_A 103 DIPDLVLHDITSYPARVLARR---WGVPAVSLSPNLV 136 (430) T ss_dssp SCCSEEEEETTCHHHHHHHHH---HTCCEEEEESSCC T ss_pred CCCEEEEECCCCHHHHHHHHH---CCCCEEEEECCCC T ss_conf 498399975730269999998---1999899955655 No 104 >1ujn_A Dehydroquinate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, lyase; 1.80A {Thermus thermophilus HB8} SCOP: e.22.1.1 Probab=52.58 E-value=11 Score=16.77 Aligned_cols=35 Identities=11% Similarity=0.072 Sum_probs=23.6 Q ss_pred CHHHCCEEEEECCCHHHHHHHHHHH---HCCCEEEEECC Q ss_conf 8455779999879548999999974---12872994153 Q gi|254780754|r 33 TSEEADVIVVLGGDGFMLQSFHQSK---EYDKPIYGMNC 68 (264) Q Consensus 33 ~~~~~Dlii~iGGDGT~L~a~~~~~---~~~~PilGIn~ 68 (264) ..+..|+++++|| |++.-.+..+. ..++|++-|-+ T Consensus 81 ~~~r~~~ivaiGG-G~v~D~agf~As~y~rgi~~i~vPT 118 (348) T 1ujn_A 81 GLPRNATLLVVGG-GTLTDLGGFVAATYLRGVAYLAFPT 118 (348) T ss_dssp TCCTTCEEEEEES-HHHHHHHHHHHHHBTTCCEEEEEEC T ss_pred CCCCCCCEEEECC-EEEEEHHHHHHHHHHCCCEEEEECC T ss_conf 9998673489758-1240058999999726944662068 No 105 >3c65_A Uvrabc system protein C; UVRC, endonuclease, nucleotide excision repair, DNA repair, RNAse H, cytoplasm, DNA damage, DNA excision; 1.90A {Bacillus stearothermophilus} Probab=52.29 E-value=9.3 Score=17.22 Aligned_cols=65 Identities=17% Similarity=0.224 Sum_probs=37.8 Q ss_pred CEEEEEEECC-CHHHHHHHHHHHHHC---CCCCHHHCCEEEEECCCHHHHHHHHHH---HHCCCEEEEECCC Q ss_conf 5059999559-989999999999870---788845577999987954899999997---4128729941534 Q gi|254780754|r 5 IQKIHFKASN-AKKAQEAYDKFVKIY---GNSTSEEADVIVVLGGDGFMLQSFHQS---KEYDKPIYGMNCG 69 (264) Q Consensus 5 ~~ki~i~~~~-~~~a~~~~~~l~~~~---~~~~~~~~Dlii~iGGDGT~L~a~~~~---~~~~~PilGIn~G 69 (264) +.++.+-... ..+-..+.+.+.++| .++....|||+++=||-|-+=.|...+ ...++|++|+--| T Consensus 47 YR~f~ik~~~~~DDy~~m~Evl~Rr~~r~~~~~~~~PDLilIDGGkgQl~~a~~~l~~~~~~~i~ii~iaK~ 118 (226) T 3c65_A 47 YRKYKVKTVAGPNDYETMREVVRRRYTRVLKEGLPLPDLIIIDGGKGHLSAVRDVLENELGLDVPLAGLAKD 118 (226) T ss_dssp CEEEECCCCCTTCHHHHHHHHHHHHHHHHHHHTCCCCSEEEESSCHHHHHHHHHHHHHTSCCCCCEEEC--- T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHHCCCCCCEEEECCC T ss_conf 602265678899749999999999877766318999998997898899999999999747888544430245 No 106 >3iaa_A CALG2; glycosyltransferase, calicheamicin, TDP, enediyne, TR; HET: TYD; 2.50A {Micromonospora echinospora} Probab=52.19 E-value=11 Score=16.73 Aligned_cols=24 Identities=13% Similarity=0.073 Sum_probs=13.4 Q ss_pred CCEEEEECCCCHHHHHHHCCCEEE Q ss_conf 350798226650446752298177 Q gi|254780754|r 152 CDGLVVSTPIGSTAYNFSALGPIL 175 (264) Q Consensus 152 ~DGvivSTptGSTAY~lSaGGpIv 175 (264) +|.++.-...||+.-++++|=|+| T Consensus 314 ~~~~i~~gg~~t~~Eala~G~P~v 337 (416) T 3iaa_A 314 ATVCVTHGGMGTLMEALYWGRPLV 337 (416) T ss_dssp EEEEEESCCHHHHHHHHHTTCCEE T ss_pred CCEEEEECCCCCHHHHHHHCCCEE T ss_conf 423575156684999999499999 No 107 >2kkn_A Uncharacterized protein; protein phosphatase 2A homologue, structural genomics, PSI- 2, protein structure initiative; NMR {Thermotoga maritima} Probab=52.05 E-value=6.9 Score=18.03 Aligned_cols=61 Identities=18% Similarity=0.361 Sum_probs=34.9 Q ss_pred CCCEEEEEEECCCH--HHHHHHHHHHHHCCCCCHHHCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCC Q ss_conf 76505999955998--999999999987078884557799998795489999999741287299415343 Q gi|254780754|r 3 RNIQKIHFKASNAK--KAQEAYDKFVKIYGNSTSEEADVIVVLGGDGFMLQSFHQSKEYDKPIYGMNCGS 70 (264) Q Consensus 3 ~~~~ki~i~~~~~~--~a~~~~~~l~~~~~~~~~~~~Dlii~iGGDGT~L~a~~~~~~~~~PilGIn~G~ 70 (264) +.||||.++++..- .+.++.+.+.+.+ +++|+||..| |-+=..++..+.....|++.|. |+ T Consensus 20 ~~~~rIliiSDtH~~~~~~~l~~~i~~~~-----~~~D~iih~G-D~~~~~~l~~l~~~~~~v~~V~-GN 82 (178) T 2kkn_A 20 QGVKRFLLISDSHVPVRMASLPDEILNSL-----KEYDGVIGLG-DYVDLDTVILLEKFSKEFYGVH-GN 82 (178) T ss_dssp --CEEEEEECCCCBTTTTCCCCHHHHHGG-----GGCSEEEESS-CBSCHHHHHHHHHHTSSEEECC-CS T ss_pred HCCEEEEEECCCCCCCCCHHHHHHHHHHH-----CCCCEEEECC-CCCCHHHHHHHHHCCCCEEEEE-CC T ss_conf 27129999967898864102569999874-----4789999999-9866757899873079879998-99 No 108 >3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB} Probab=51.98 E-value=11 Score=16.71 Aligned_cols=91 Identities=13% Similarity=0.245 Sum_probs=54.8 Q ss_pred CCCCCEEEEEEECCCHHHHHHHHHHHHHCCC-----C---------CHHHCCEEEE----ECCCHH-HHHHHHHHHH-CC Q ss_conf 9876505999955998999999999987078-----8---------8455779999----879548-9999999741-28 Q gi|254780754|r 1 MDRNIQKIHFKASNAKKAQEAYDKFVKIYGN-----S---------TSEEADVIVV----LGGDGF-MLQSFHQSKE-YD 60 (264) Q Consensus 1 m~~~~~ki~i~~~~~~~a~~~~~~l~~~~~~-----~---------~~~~~Dlii~----iGGDGT-~L~a~~~~~~-~~ 60 (264) |..+-.||.++. +++...+....+.+..+- . ....+|+|+. =|.||. +++..|.... .. T Consensus 3 ~~~~~~kILiVD-Dd~~~~~~l~~~L~~~G~~v~~a~~~~~al~~l~~~~~DlillD~~mP~~dG~el~~~ir~~~~~~~ 81 (154) T 3gt7_A 3 LSNRAGEILIVE-DSPTQAEHLKHILEETGYQTEHVRNGREAVRFLSLTRPDLIISDVLMPEMDGYALCRWLKGQPDLRT 81 (154) T ss_dssp ----CCEEEEEC-SCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHTTCCCSEEEEESCCSSSCHHHHHHHHHHSTTTTT T ss_pred CCCCCCEEEEEE-CCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCC T ss_conf 999999099997-9999999999999987999999899999999998389999998089999988799999985845579 Q ss_pred CEEEEEC-------------CCCCCCCCCCCCHHHHHHHHHHCCC Q ss_conf 7299415-------------3433201044587899986642012 Q gi|254780754|r 61 KPIYGMN-------------CGSVGFLMNEYCIENLVERLSVAVE 92 (264) Q Consensus 61 ~PilGIn-------------~G~lGFL~~~~~~~~~~~~l~~~~~ 92 (264) +||+-+. .|--+||+-++..+.+...+.+... T Consensus 82 iPiI~lTa~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~l~ 126 (154) T 3gt7_A 82 IPVILLTILSDPRDVVRSLECGADDFITKPCKDVVLASHVKRLLS 126 (154) T ss_dssp SCEEEEECCCSHHHHHHHHHHCCSEEEESSCCHHHHHHHHHHHHH T ss_pred CEEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH T ss_conf 959999826999999999977988799798999999999999999 No 109 >3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633} Probab=51.11 E-value=12 Score=16.62 Aligned_cols=90 Identities=13% Similarity=0.176 Sum_probs=51.2 Q ss_pred CCCCCEEEEEEECCCHHHHHHHHHHHHH-CC---CCC---------HHHCCEEEE----ECCCHH-HHHHHHHHHHCCCE Q ss_conf 9876505999955998999999999987-07---888---------455779999----879548-99999997412872 Q gi|254780754|r 1 MDRNIQKIHFKASNAKKAQEAYDKFVKI-YG---NST---------SEEADVIVV----LGGDGF-MLQSFHQSKEYDKP 62 (264) Q Consensus 1 m~~~~~ki~i~~~~~~~a~~~~~~l~~~-~~---~~~---------~~~~Dlii~----iGGDGT-~L~a~~~~~~~~~P 62 (264) |+.+ .||.++.++...+..+.+.|... |. ... .+.+|+|++ =|+||. +++.++. ....+| T Consensus 1 M~mk-~rILIVDDd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~~~~pdlillD~~mp~~~G~~l~~~ir~-~~~~~p 78 (137) T 3cfy_A 1 MSLR-PRVLLVEDSTSLAILYKQYVKDEPYDIFHVETGRDAIQFIERSKPQLIILDLKLPDMSGEDVLDWINQ-NDIPTS 78 (137) T ss_dssp --CC-CEEEEECSCTTHHHHHHHHTTTSSSEEEEESSHHHHHHHHHHHCCSEEEECSBCSSSBHHHHHHHHHH-TTCCCE T ss_pred CCCC-CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHH-HCCCCC T ss_conf 9999-76999979999999999999987999999899999999998479999998389999988999999997-489984 Q ss_pred EEEECC-------------CCCCCCCCCCCHHHHHHHHHHCCC Q ss_conf 994153-------------433201044587899986642012 Q gi|254780754|r 63 IYGMNC-------------GSVGFLMNEYCIENLVERLSVAVE 92 (264) Q Consensus 63 ilGIn~-------------G~lGFL~~~~~~~~~~~~l~~~~~ 92 (264) |+-+.. |--+||.-++..+.+...+..... T Consensus 79 iI~lt~~~~~~~~~~~~~~Ga~dyl~KP~~~~~L~~~i~~~l~ 121 (137) T 3cfy_A 79 VIIATAHGSVDLAVNLIQKGAEDFLEKPINADRLKTSVALHLK 121 (137) T ss_dssp EEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHH T ss_pred EEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH T ss_conf 8999877999999999867986899898999999999999999 No 110 >2nrr_A Uvrabc system protein C; UVRC, endonuclase, NER, hydrolase; 1.20A {Thermotoga maritima} Probab=50.15 E-value=12 Score=16.53 Aligned_cols=64 Identities=14% Similarity=0.230 Sum_probs=40.2 Q ss_pred CEEEEEEECCCHHHHHHHHHHHHHCCCCCHHHCCEEEEECCCHHHHHHHHHHH--HCCCEEEEECCCC Q ss_conf 50599995599899999999998707888455779999879548999999974--1287299415343 Q gi|254780754|r 5 IQKIHFKASNAKKAQEAYDKFVKIYGNSTSEEADVIVVLGGDGFMLQSFHQSK--EYDKPIYGMNCGS 70 (264) Q Consensus 5 ~~ki~i~~~~~~~a~~~~~~l~~~~~~~~~~~~Dlii~iGGDGT~L~a~~~~~--~~~~PilGIn~G~ 70 (264) +.++.+-.+...+-..+.+-+.+++... ..|||+++=||-|-+=.|.+.+. ..++|++|+--+. T Consensus 50 YR~f~i~~~~~dDy~~m~evl~RR~~~~--~lPDLilIDGGkgQL~~a~~~l~~~~~~i~~i~laK~~ 115 (159) T 2nrr_A 50 YRRYKIEQDHPDDYESIRTVVKRRYSKH--PLPNLLFVDGGIGQVNAAIEALKEIGKDCPVVGLAKKE 115 (159) T ss_dssp CEEEEC-----CHHHHHHHHHHHHHTTS--CCCSEEEESSCHHHHHHHHHHHHHTTCCCCEEEEC--- T ss_pred HHHHCCCCCCCHHHHHHHHHHHHHHCCC--CCCCEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCC T ss_conf 8885337778619999999999985679--99858998099899999999999849966312334521 No 111 >1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.10A {Thermus thermophilus} SCOP: d.159.1.6 Probab=50.05 E-value=12 Score=16.52 Aligned_cols=61 Identities=20% Similarity=0.172 Sum_probs=39.3 Q ss_pred CCCCCEEEEEEECCCH--HH-HHHHHHHHHHCCCCCHHHCCEEEEECCCH--------HHHHHHHHHHHCCCEEEEECCC Q ss_conf 9876505999955998--99-99999999870788845577999987954--------8999999974128729941534 Q gi|254780754|r 1 MDRNIQKIHFKASNAK--KA-QEAYDKFVKIYGNSTSEEADVIVVLGGDG--------FMLQSFHQSKEYDKPIYGMNCG 69 (264) Q Consensus 1 m~~~~~ki~i~~~~~~--~a-~~~~~~l~~~~~~~~~~~~Dlii~iGGDG--------T~L~a~~~~~~~~~PilGIn~G 69 (264) |-|++++|..+++-.= ++ +++.+...+ +++|+++..| |= .+....+.+...++|++-|- | T Consensus 1 ~~~~~~~i~~~~d~hg~~~ale~~l~~~~~-------~~~D~vv~~G-Dl~~~~~~~~~~~~~~~~l~~~~~pv~~v~-G 71 (228) T 1uf3_A 1 MRRTVRYILATSNPMGDLEALEKFVKLAPD-------TGADAIALIG-NLMPKAAKSRDYAAFFRILSEAHLPTAYVP-G 71 (228) T ss_dssp CCCCCCEEEEEECCTTCHHHHHHHHTHHHH-------HTCSEEEEES-CSSCTTCCHHHHHHHHHHHGGGCSCEEEEC-C T ss_pred CCCCEEEEEEEECCCCCHHHHHHHHHHHHH-------HCCCEEEECC-CCCCCCCCCHHHHHHHHHHHCCCCCEEEEE-C T ss_conf 987312999995688999999999998777-------2999999878-869998782999999997404577589996-8 Q ss_pred C Q ss_conf 3 Q gi|254780754|r 70 S 70 (264) Q Consensus 70 ~ 70 (264) + T Consensus 72 N 72 (228) T 1uf3_A 72 P 72 (228) T ss_dssp T T ss_pred C T ss_conf 9 No 112 >3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} Probab=50.03 E-value=12 Score=16.52 Aligned_cols=88 Identities=18% Similarity=0.105 Sum_probs=50.9 Q ss_pred CCCCCEEEEEEECCCHHHHHHHHHHHHHCCCC-----C---------HHHCCEEEE----ECCCH-HHHHHHHHHHHCCC Q ss_conf 98765059999559989999999999870788-----8---------455779999----87954-89999999741287 Q gi|254780754|r 1 MDRNIQKIHFKASNAKKAQEAYDKFVKIYGNS-----T---------SEEADVIVV----LGGDG-FMLQSFHQSKEYDK 61 (264) Q Consensus 1 m~~~~~ki~i~~~~~~~a~~~~~~l~~~~~~~-----~---------~~~~Dlii~----iGGDG-T~L~a~~~~~~~~~ 61 (264) |....+|+-++.+ .+...+......+.++.. + ...+|+||+ =|.|| .+++.++.. ..++ T Consensus 3 ~~~~~mkVLiVDD-d~~~~~~l~~~L~~~g~~v~~a~~g~eAl~~~~~~~~DlvilD~~mP~~dG~el~~~ir~~-~~~~ 80 (137) T 3hdg_A 3 LREVALKILIVED-DTDAREWLSTIISNHFPEVWSAGDGEEGERLFGLHAPDVIITDIRMPKLGGLEMLDRIKAG-GAKP 80 (137) T ss_dssp ----CCCEEEECS-CHHHHHHHHHHHHTTCSCEEEESSHHHHHHHHHHHCCSEEEECSSCSSSCHHHHHHHHHHT-TCCC T ss_pred CCCCCCEEEEEEC-CHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHH-CCCC T ss_conf 8780678999958-8999999999999679999998999999999874799899973789999899999999950-9899 Q ss_pred EEEEECC-------------CCCCCCCCCCCHHHHHHHHHHC Q ss_conf 2994153-------------4332010445878999866420 Q gi|254780754|r 62 PIYGMNC-------------GSVGFLMNEYCIENLVERLSVA 90 (264) Q Consensus 62 PilGIn~-------------G~lGFL~~~~~~~~~~~~l~~~ 90 (264) ||+-+.. |--+||.-++.++++...+.+. T Consensus 81 piI~lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~ 122 (137) T 3hdg_A 81 YVIVISAFSEMKYFIKAIELGVHLFLPKPIEPGRLMETLEDF 122 (137) T ss_dssp EEEECCCCCCHHHHHHHHHHCCSEECCSSCCHHHHHHHHHHH T ss_pred CEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHH T ss_conf 589998989999999999869989997989999999999999 No 113 >1t35_A Hypothetical protein YVDD, putative lysine decarboxylase; structural genomics target, NYSGXRC, PSI, protein structure initiative; 2.72A {Bacillus subtilis} SCOP: c.129.1.1 Probab=49.95 E-value=11 Score=16.74 Aligned_cols=60 Identities=15% Similarity=0.138 Sum_probs=32.8 Q ss_pred CEEEEEEECCC----HHHHHHHHHHHHHCCCCCHHHCCEEEEECC-C-HHHHHHHHHHHHCCCEEEEECCC Q ss_conf 50599995599----899999999998707888455779999879-5-48999999974128729941534 Q gi|254780754|r 5 IQKIHFKASNA----KKAQEAYDKFVKIYGNSTSEEADVIVVLGG-D-GFMLQSFHQSKEYDKPIYGMNCG 69 (264) Q Consensus 5 ~~ki~i~~~~~----~~a~~~~~~l~~~~~~~~~~~~Dlii~iGG-D-GT~L~a~~~~~~~~~PilGIn~G 69 (264) ||++.++.+.. +.-.+.++++-+...+ ...-++.|| . |-|=.+++-+...+--+.||... T Consensus 1 mk~I~Vf~gs~~~~~~~~~~~a~~lg~~La~-----~g~~lV~GGG~~GlM~ava~ga~~~gg~v~Gi~~~ 66 (191) T 1t35_A 1 MKTICVFAGSNPGGNEAYKRKAAELGVYMAE-----QGIGLVYGGSRVGLMGTIADAIMENGGTAIGVMPS 66 (191) T ss_dssp CCEEEEECCSSCCSSTHHHHHHHHHHHHHHH-----TTCEEEECCCCSHHHHHHHHHHHTTTCCEEEEEET T ss_pred CCEEEEECCCCCCCCCHHHHHHHHHHHHHHH-----CCCEEEECCCCHHHHHHHHHHHHHCCCCEEEECCH T ss_conf 9779998547999696899999999999998-----79969989985889999998999759934320650 No 114 >2rk3_A Protein DJ-1; parkinson'S disease, THIJ, PFPI, chaperone, cytoplasm, disease mutation, nucleus, oncogene, oxidation, parkinson disease; 1.05A {Homo sapiens} PDB: 1pdv_A 1pdw_A 3cy6_A 1pe0_A 3cza_A 3cyf_A 2rk4_A 3cz9_A* 3ezg_A 3f71_A 1p5f_A 1ps4_A 1q2u_A 1soa_A 1ucf_A 2or3_A 3bwe_A 3b38_A 3b36_A 2rk6_A ... Probab=49.63 E-value=12 Score=16.48 Aligned_cols=36 Identities=19% Similarity=0.282 Sum_probs=29.2 Q ss_pred HCCEEEEECCCH---------HHHHHHHHHHHCCCEEEEECCCCC Q ss_conf 577999987954---------899999997412872994153433 Q gi|254780754|r 36 EADVIVVLGGDG---------FMLQSFHQSKEYDKPIYGMNCGSV 71 (264) Q Consensus 36 ~~Dlii~iGGDG---------T~L~a~~~~~~~~~PilGIn~G~l 71 (264) ++|++++.||-+ -+++.++.+...++|+.+|-.|.. T Consensus 66 ~yD~lvIpGG~~~~~~l~~~~~l~~~i~~~~~~~k~i~aiC~G~~ 110 (197) T 2rk3_A 66 PYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIATICAGPT 110 (197) T ss_dssp CCSEEEECCCHHHHHHHHHCHHHHHHHHHHHHTTCEEEEETTTHH T ss_pred CCEEEEECCCCCHHHHHCCCHHHHHHHHHHHHCCCEEEEECHHHH T ss_conf 970999859970386744599999999998744968960071789 No 115 >2ywd_A Glutamine amidotransferase subunit PDXT; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.90A {Thermus thermophilus HB8} Probab=49.17 E-value=12 Score=16.43 Aligned_cols=39 Identities=18% Similarity=0.288 Sum_probs=23.9 Q ss_pred CCHHHCCEEEEECCCHH-----------HHHHHHHHHHCCCEEEEECCCC Q ss_conf 88455779999879548-----------9999999741287299415343 Q gi|254780754|r 32 STSEEADVIVVLGGDGF-----------MLQSFHQSKEYDKPIYGMNCGS 70 (264) Q Consensus 32 ~~~~~~Dlii~iGGDGT-----------~L~a~~~~~~~~~PilGIn~G~ 70 (264) ++.+++|.+|.=||--+ .....+.....++|+|||=.|. T Consensus 35 ~dl~~~d~lIlPGG~~~~~~~~l~~~~~~~~~~~~~~~~~~PiLGIClG~ 84 (191) T 2ywd_A 35 EHLEGLKALIVPGGESTTIGKLAREYGIEDEVRKRVEEGSLALFGTCAGA 84 (191) T ss_dssp GGGTTCSEEEECSSCHHHHHHHHHHTTHHHHHHHHHHTTCCEEEEETHHH T ss_pred HHHCCCCEEEECCCCHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEECHHH T ss_conf 99607898999899668999987775786899999984799679975667 No 116 >1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase; HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1 PDB: 1i7q_B 1i7s_B* Probab=49.14 E-value=7.6 Score=17.77 Aligned_cols=34 Identities=24% Similarity=0.370 Sum_probs=23.7 Q ss_pred HCCEEEEECCCHH------HHHHHHHHHHCCCEEEEECCCC Q ss_conf 5779999879548------9999999741287299415343 Q gi|254780754|r 36 EADVIVVLGGDGF------MLQSFHQSKEYDKPIYGMNCGS 70 (264) Q Consensus 36 ~~Dlii~iGGDGT------~L~a~~~~~~~~~PilGIn~G~ 70 (264) ++|.+|.-||.|. ...... ....++|+|||-.|+ T Consensus 47 ~~dgiILsgGPg~p~~~~~~~~~~~-~~~~~iPiLGIC~G~ 86 (192) T 1i1q_B 47 KNPVLMLSPGPGVPSEAGCMPELLT-RLRGKLPIIGICLGH 86 (192) T ss_dssp SSEEEEECCCSSCGGGSTTHHHHHH-HHBTTBCEEEETHHH T ss_pred CCCEEEEECCCCCCCCCCCCHHHHH-HHHCCCCHHHHCHHH T ss_conf 9696998199987143313379999-985699814538767 No 117 >1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1 Probab=48.99 E-value=8.5 Score=17.47 Aligned_cols=40 Identities=28% Similarity=0.402 Sum_probs=32.3 Q ss_pred CCCCCHHHCCEEEEECCCHH-----HHHHHHHHHHCCCEEEEECC Q ss_conf 07888455779999879548-----99999997412872994153 Q gi|254780754|r 29 YGNSTSEEADVIVVLGGDGF-----MLQSFHQSKEYDKPIYGMNC 68 (264) Q Consensus 29 ~~~~~~~~~Dlii~iGGDGT-----~L~a~~~~~~~~~PilGIn~ 68 (264) +.+...++.|++|++.|==| +-.-...+...++|++||.. T Consensus 31 W~d~~~~~a~vVIVL~G~yt~~s~WI~~EI~~A~~~~KPIIgV~p 75 (111) T 1eiw_A 31 WRPATPEDADAVIVLAGLWGTRRDEILGAVDLARKSSKPIITVRP 75 (111) T ss_dssp EEECCSSSCSEEEEEGGGTTTSHHHHHHHHHHHTTTTCCEEEECC T ss_pred CCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEE T ss_conf 120332559899999404446768999999999986998899981 No 118 >3fij_A LIN1909 protein; 11172J, uncharacterized protein, nysgrc, PSI-II, structural genomics, protein structure initiative; 2.30A {Listeria innocua} Probab=48.93 E-value=12 Score=16.41 Aligned_cols=36 Identities=19% Similarity=0.430 Sum_probs=25.4 Q ss_pred HHCCEEEEECCC-----------------------HHHHHHHHHHHHCCCEEEEECCCC Q ss_conf 557799998795-----------------------489999999741287299415343 Q gi|254780754|r 35 EEADVIVVLGGD-----------------------GFMLQSFHQSKEYDKPIYGMNCGS 70 (264) Q Consensus 35 ~~~Dlii~iGGD-----------------------GT~L~a~~~~~~~~~PilGIn~G~ 70 (264) +.+|-++.-||. -.-+...+.+...++|+|||-.|. T Consensus 60 ~~~DGvll~GG~dv~p~~yg~~~~~~~~~~~~~Rd~~e~~li~~a~~~~~PilGIC~G~ 118 (254) T 3fij_A 60 SLVDGLLLTGGQDITPQLYLEEPSQEIGAYFPPRDSYEIALVRAALDAGKPIFAICRGM 118 (254) T ss_dssp HTCSEEEECCCSCCCGGGGTCCCCTTCCCCCHHHHHHHHHHHHHHHHTTCCEEEETHHH T ss_pred HHCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECHHH T ss_conf 65694996588778755468778754588765568999999999998599889987518 No 119 >3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} PDB: 3dgf_C 3dge_C Probab=47.77 E-value=13 Score=16.30 Aligned_cols=84 Identities=15% Similarity=0.251 Sum_probs=48.5 Q ss_pred EEEEEECCCHHHHHHHHHHHHHCCCC--------------CHHHCCEEEE----ECCCHH-HHHHHHHHH-HCCCEEEEE Q ss_conf 59999559989999999999870788--------------8455779999----879548-999999974-128729941 Q gi|254780754|r 7 KIHFKASNAKKAQEAYDKFVKIYGNS--------------TSEEADVIVV----LGGDGF-MLQSFHQSK-EYDKPIYGM 66 (264) Q Consensus 7 ki~i~~~~~~~a~~~~~~l~~~~~~~--------------~~~~~Dlii~----iGGDGT-~L~a~~~~~-~~~~PilGI 66 (264) ||.++ ++++...+.........+-+ ....+|+++. =|.||. +++..|... ..++||+.+ T Consensus 4 rILvV-DD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~pdliilD~~mP~~~G~el~~~ir~~~~~~~iPiI~l 82 (122) T 3gl9_A 4 KVLLV-DDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKLSEFTPDLIVLXIMMPVMDGFTVLKKLQEKEEWKRIPVIVL 82 (122) T ss_dssp EEEEE-CSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHTTBCCSEEEECSCCSSSCHHHHHHHHHTSTTTTTSCEEEE T ss_pred CEEEE-ECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCCCCEEEE T ss_conf 59999-69999999999999987999999899999999998379999985102899988999999983887899989998 Q ss_pred CC-------------CCCCCCCCCCCHHHHHHHHHHCC Q ss_conf 53-------------43320104458789998664201 Q gi|254780754|r 67 NC-------------GSVGFLMNEYCIENLVERLSVAV 91 (264) Q Consensus 67 n~-------------G~lGFL~~~~~~~~~~~~l~~~~ 91 (264) .. |--+||+-++..+++...+.+.. T Consensus 83 T~~~~~~~~~~a~~~G~~~yl~KP~~~~~L~~~v~~~L 120 (122) T 3gl9_A 83 TAKGGEEDESLALSLGARKVMRKPFSPSQFIEEVKHLL 120 (122) T ss_dssp ESCCSHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHH T ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH T ss_conf 27999999999998799889979899999999999985 No 120 >1a9x_B Carbamoyl phosphate synthetase (small chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: c.8.3.1 c.23.16.1 PDB: 1bxr_B* 1ce8_B* 1jdb_C* 1cs0_B* 1m6v_B* 1c30_B* 1c3o_B* 1kee_B* 1t36_B* Probab=47.09 E-value=12 Score=16.61 Aligned_cols=14 Identities=29% Similarity=0.456 Sum_probs=7.1 Q ss_pred EECCEEEEECCCCH Q ss_conf 10350798226650 Q gi|254780754|r 150 LVCDGLVVSTPIGS 163 (264) Q Consensus 150 ~~~DGvivSTptGS 163 (264) +.-||+++|-.-|. T Consensus 230 ~~pDgi~lS~GPG~ 243 (379) T 1a9x_B 230 MNPDGIFLSNGPGD 243 (379) T ss_dssp TCCSEEEECCCSBC T ss_pred CCCCEEEECCCCCC T ss_conf 19998996699999 No 121 >3clh_A 3-dehydroquinate synthase; shikimate pathway, aromatic amino acid biosynthesis, DHQS, amino-acid biosynthesis, cytoplasm, lyase, NAD; HET: NAD; 2.40A {Helicobacter pylori} Probab=46.65 E-value=14 Score=16.19 Aligned_cols=51 Identities=10% Similarity=0.139 Sum_probs=33.3 Q ss_pred HHHHHHHHHHHHCCCCCHHHCCEEEEECCCHHHHHHHHHHH---HCCCEEEEECC Q ss_conf 99999999998707888455779999879548999999974---12872994153 Q gi|254780754|r 17 KAQEAYDKFVKIYGNSTSEEADVIVVLGGDGFMLQSFHQSK---EYDKPIYGMNC 68 (264) Q Consensus 17 ~a~~~~~~l~~~~~~~~~~~~Dlii~iGGDGT~L~a~~~~~---~~~~PilGIn~ 68 (264) |+.+..+.+...+.+...+..|+++++|| |++.-.+..+. .+++|++-|-+ T Consensus 66 Ks~~~~~~i~~~l~~~~~~r~~~viaiGG-G~v~D~agf~As~y~RGi~~i~iPT 119 (343) T 3clh_A 66 KNFHSLERILNNAFEMQLNRHSLMIALGG-GVISDMVGFASSIYFRGIDFINIPT 119 (343) T ss_dssp CSHHHHHHHHHHHHHTTCCTTCEEEEEES-HHHHHHHHHHHHHBTTCCEEEEEEC T ss_pred CCHHHHHHHHHHHHHHCCCCCCEEEEECC-CHHHHHHHHHHHHHCCCCEEEECCC T ss_conf 99999999999999818998662898279-4476699999998717913897586 No 122 >2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B Probab=46.56 E-value=14 Score=16.18 Aligned_cols=84 Identities=21% Similarity=0.306 Sum_probs=49.9 Q ss_pred EEEEEECCCHHHHHHHHHHHHHCCCCC--------------------HHHCCEEEE----ECCCH-HHHHHHHHHHHCCC Q ss_conf 599995599899999999998707888--------------------455779999----87954-89999999741287 Q gi|254780754|r 7 KIHFKASNAKKAQEAYDKFVKIYGNST--------------------SEEADVIVV----LGGDG-FMLQSFHQSKEYDK 61 (264) Q Consensus 7 ki~i~~~~~~~a~~~~~~l~~~~~~~~--------------------~~~~Dlii~----iGGDG-T~L~a~~~~~~~~~ 61 (264) |+- +.++++...++.+.+.+.++... .+.+|+++. =|-|| .+++..|.-....+ T Consensus 4 rVL-iVDD~~~~~~~l~~~L~~~g~~~v~~a~~g~eal~~l~~~~~~~~~~dlil~D~~MP~~dG~~~~~~ir~~~~~~~ 82 (133) T 2r25_B 4 KIL-VVEDNHVNQEVIKRMLNLEGIENIELACDGQEAFDKVKELTSKGENYNMIFMDVQMPKVDGLLSTKMIRRDLGYTS 82 (133) T ss_dssp CEE-EECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHHHHHTCCCSEEEECSCCSSSCHHHHHHHHHHHSCCCS T ss_pred EEE-EEECCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCC T ss_conf 899-9969899999999999986994899989999999999874213689888997388899889999999986489999 Q ss_pred EEEEECC-------------CCCCCCCCCCCHHHHHHHHHHCC Q ss_conf 2994153-------------43320104458789998664201 Q gi|254780754|r 62 PIYGMNC-------------GSVGFLMNEYCIENLVERLSVAV 91 (264) Q Consensus 62 PilGIn~-------------G~lGFL~~~~~~~~~~~~l~~~~ 91 (264) ||+-+.. |--|||.-++..+++.+.|.+.. T Consensus 83 piI~lta~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~ 125 (133) T 2r25_B 83 PIVALTAFADDSNIKECLESGMNGFLSKPIKRPKLKTILTEFC 125 (133) T ss_dssp CEEEEESCCSHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHC T ss_pred CEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH T ss_conf 2899974699999999998699889979899999999999999 No 123 >1u9c_A APC35852; structural genomics, protein structure initiative, MCSG, parkinson'S disease, chaperone, cysteine protease, PSI; 1.35A {Geobacillus stearothermophilus} SCOP: c.23.16.2 Probab=46.52 E-value=14 Score=16.18 Aligned_cols=44 Identities=25% Similarity=0.335 Sum_probs=34.8 Q ss_pred CCHHHCCEEEEECCCHHH---------HHHHHHHHHCCCEEEEECCCCCCCCC Q ss_conf 884557799998795489---------99999974128729941534332010 Q gi|254780754|r 32 STSEEADVIVVLGGDGFM---------LQSFHQSKEYDKPIYGMNCGSVGFLM 75 (264) Q Consensus 32 ~~~~~~Dlii~iGGDGT~---------L~a~~~~~~~~~PilGIn~G~lGFL~ 75 (264) .++++.|.|+.-||=|.+ .+.++.+...++|+-.|-.|-..++. T Consensus 85 v~~~dydav~ipGG~g~~~~l~~~~~l~~li~~~~~~~k~iaaIChgp~~L~~ 137 (224) T 1u9c_A 85 DDAHGFDAIFLPGGHGTMFDFPDNETLQYVLQQFAEDGRIIAAVCHGPSGLVN 137 (224) T ss_dssp GGGSSCSEEEECCCTTHHHHSTTCHHHHHHHHHHHHTTCEEEEETTGGGGGTT T ss_pred CCHHHCCEEEECCCCCHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCHHHHHC T ss_conf 79756898995898307775211589999999999759979996123000111 No 124 >3cg4_A Response regulator receiver domain protein (CHEY- like); structural genomics, unknown function, uncharacterized protein; HET: MSE; 1.61A {Methanospirillum hungatei jf-1} Probab=44.86 E-value=14 Score=16.02 Aligned_cols=91 Identities=13% Similarity=0.231 Sum_probs=51.1 Q ss_pred CCCCCEEEEEEECCCHHHHHHHHHHHHHCCC-----CCH---------HHCCEEEE----ECCCHH-HHHHHHHHH-HCC Q ss_conf 9876505999955998999999999987078-----884---------55779999----879548-999999974-128 Q gi|254780754|r 1 MDRNIQKIHFKASNAKKAQEAYDKFVKIYGN-----STS---------EEADVIVV----LGGDGF-MLQSFHQSK-EYD 60 (264) Q Consensus 1 m~~~~~ki~i~~~~~~~a~~~~~~l~~~~~~-----~~~---------~~~Dlii~----iGGDGT-~L~a~~~~~-~~~ 60 (264) |..+..+|.++. +++...+..+.+.+..+- ... ..+|+|+. =|.||. +++.++.-. ... T Consensus 3 ~~~~k~~VLiVD-D~~~~r~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~dliilD~~mP~~~G~el~~~ir~~~~~~~ 81 (142) T 3cg4_A 3 LAEHKGDVMIVD-DDAHVRIAVKTILSDAGFHIISADSGGQCIDLLKKGFSGVVLLDIMMPGMDGWDTIRAILDNSLEQG 81 (142) T ss_dssp ---CCCEEEEEC-SCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTCCCEEEEEESCCSSSCHHHHHHHHHHTTCCTT T ss_pred CCCCCCEEEEEE-CCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCC T ss_conf 788999599997-9899999999999987999999899999999997179999998389999868999999985755689 Q ss_pred CEEEEECC-------------CCCCCCCCCCCHHHHHHHHHHCCC Q ss_conf 72994153-------------433201044587899986642012 Q gi|254780754|r 61 KPIYGMNC-------------GSVGFLMNEYCIENLVERLSVAVE 92 (264) Q Consensus 61 ~PilGIn~-------------G~lGFL~~~~~~~~~~~~l~~~~~ 92 (264) +||+-+.. |-.+||+-+++.+++.+.+..... T Consensus 82 ipiI~lT~~~~~~~~~~a~~~G~~dyl~KP~~~~~Ll~~v~~~l~ 126 (142) T 3cg4_A 82 IAIVMLTAKNAPDAKMIGLQEYVVDYITKPFDNEDLIEKTTFFMG 126 (142) T ss_dssp EEEEEEECTTCCCCSSTTGGGGEEEEEESSCCHHHHHHHHHHHHH T ss_pred CEEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH T ss_conf 959999788999999999986998899898999999999999999 No 125 >2p6p_A Glycosyl transferase; GT-B family, X-RAY-diffraction,urdamycina- biosynthesis; 1.88A {Streptomyces fradiae} Probab=44.73 E-value=14 Score=16.00 Aligned_cols=31 Identities=13% Similarity=-0.191 Sum_probs=15.8 Q ss_pred HHCCEEEEECCCHHHHHHHHHHHHCCCEEEEECC Q ss_conf 5577999987954899999997412872994153 Q gi|254780754|r 35 EEADVIVVLGGDGFMLQSFHQSKEYDKPIYGMNC 68 (264) Q Consensus 35 ~~~Dlii~iGGDGT~L~a~~~~~~~~~PilGIn~ 68 (264) ..+|++++-..-..-..+++.. ..|...... T Consensus 106 ~~~d~v~~~~~~~~~~~~a~~~---~~~~~~~~~ 136 (384) T 2p6p_A 106 WRPDLIVGGTMSYVAPLLALHL---GVPHARQTW 136 (384) T ss_dssp HCCSEEEEETTCTHHHHHHHHH---TCCEEEECC T ss_pred CCCCEEEECCCCHHHHHHHHHH---CCCEEEEEC T ss_conf 1996899577550899999994---998387512 No 126 >3gra_A Transcriptional regulator, ARAC family; transcription regulator, PSI-II, structural genomics, protein structure initiative; 2.30A {Pseudomonas putida KT2440} Probab=44.30 E-value=15 Score=15.96 Aligned_cols=38 Identities=21% Similarity=0.262 Sum_probs=30.0 Q ss_pred CHHHCCEEEEECCC------HHHHHHHHHHHHCCCEEEEECCCC Q ss_conf 84557799998795------489999999741287299415343 Q gi|254780754|r 33 TSEEADVIVVLGGD------GFMLQSFHQSKEYDKPIYGMNCGS 70 (264) Q Consensus 33 ~~~~~Dlii~iGGD------GT~L~a~~~~~~~~~PilGIn~G~ 70 (264) .....|++++.||. ..++..++.......+|.+|-+|. T Consensus 68 ~~~~~d~lvv~gg~~~~~~~~~l~~~Lr~~~~~g~~v~~ic~G~ 111 (202) T 3gra_A 68 ALKELDLLVVCGGLRTPLKYPELDRLLNDCAAHGMALGGLWNGA 111 (202) T ss_dssp GGTTCSEEEEECCTTCCSCCTTHHHHHHHHHHHTCEEEEETTHH T ss_pred HCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHCCEEEEECHHH T ss_conf 26657799988988654469899999999887298785105788 No 127 >3hl0_A Maleylacetate reductase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 1.60A {Agrobacterium tumefaciens str} Probab=43.98 E-value=15 Score=15.93 Aligned_cols=33 Identities=24% Similarity=0.195 Sum_probs=23.2 Q ss_pred HHCCEEEEECCCHHHHHHHHHHH-HCCCEEEEECC Q ss_conf 55779999879548999999974-12872994153 Q gi|254780754|r 35 EEADVIVVLGGDGFMLQSFHQSK-EYDKPIYGMNC 68 (264) Q Consensus 35 ~~~Dlii~iGGDGT~L~a~~~~~-~~~~PilGIn~ 68 (264) .++|+||.+|| |..+-+++... ..+.|.+-+-+ T Consensus 86 ~~~D~IiavGG-Gs~iD~aK~ia~~~~~~~i~~pt 119 (353) T 3hl0_A 86 AGADCVVSLGG-GSTTGLGKAIALRTDAAQIVIPT 119 (353) T ss_dssp TTCSEEEEEES-HHHHHHHHHHHHHHCCEEEEEEC T ss_pred CCCCEEEEECC-CCCCCHHHHHHHCCCCCEEEEEC T ss_conf 39988999588-63001334544136786577414 No 128 >2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, PSI-2, protein structure initiative; 2.00A {Desulfuromonas acetoxidans dsm 684} Probab=43.82 E-value=15 Score=15.92 Aligned_cols=90 Identities=10% Similarity=0.210 Sum_probs=54.1 Q ss_pred CCEEEEEEECCCHHHHHHHHHHHHH-CCC---C---------CHHHCCEEEE----ECCCHH-HHHHHHHHH-HCCCEEE Q ss_conf 6505999955998999999999987-078---8---------8455779999----879548-999999974-1287299 Q gi|254780754|r 4 NIQKIHFKASNAKKAQEAYDKFVKI-YGN---S---------TSEEADVIVV----LGGDGF-MLQSFHQSK-EYDKPIY 64 (264) Q Consensus 4 ~~~ki~i~~~~~~~a~~~~~~l~~~-~~~---~---------~~~~~Dlii~----iGGDGT-~L~a~~~~~-~~~~Pil 64 (264) +.+||.++.++....+-+...|.+. |.. . ....+|+|+. =+.||. +++.+|... ..++||+ T Consensus 7 ~~~rILiVDD~~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~~~~~~pdliilD~~mP~~dG~el~~~ir~~~~~~~iPiI 86 (147) T 2zay_A 7 KWWRIMLVDTQLPALAASISALSQEGFDIIQCGNAIEAVPVAVKTHPHLIITEANMPKISGMDLFNSLKKNPQTASIPVI 86 (147) T ss_dssp -CEEEEEECTTGGGGHHHHHHHHHHTEEEEEESSHHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHTSTTTTTSCEE T ss_pred CCCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCCEE T ss_conf 99889999799999999999999879999998999999999983799999985999999751899999848556897189 Q ss_pred EEC-------------CCCCCCCCCCCCHHHHHHHHHHCCCC Q ss_conf 415-------------34332010445878999866420124 Q gi|254780754|r 65 GMN-------------CGSVGFLMNEYCIENLVERLSVAVEC 93 (264) Q Consensus 65 GIn-------------~G~lGFL~~~~~~~~~~~~l~~~~~~ 93 (264) -+. .|-.+||+-++..+++...+...... T Consensus 87 ~lS~~~~~~~~~~~~~~Ga~dyl~KP~~~~~L~~~i~~~l~~ 128 (147) T 2zay_A 87 ALSGRATAKEEAQLLDMGFIDFIAKPVNAIRLSARIKRVLKL 128 (147) T ss_dssp EEESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHH T ss_pred EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHH T ss_conf 972689999999999879988997999999999999999998 No 129 >3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A* Probab=42.67 E-value=16 Score=15.80 Aligned_cols=92 Identities=13% Similarity=0.150 Sum_probs=53.7 Q ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHCCC----------------CCHHHCCEEEEE----CCCHH-HHHHHHHHHHCCC Q ss_conf 76505999955998999999999987078----------------884557799998----79548-9999999741287 Q gi|254780754|r 3 RNIQKIHFKASNAKKAQEAYDKFVKIYGN----------------STSEEADVIVVL----GGDGF-MLQSFHQSKEYDK 61 (264) Q Consensus 3 ~~~~ki~i~~~~~~~a~~~~~~l~~~~~~----------------~~~~~~Dlii~i----GGDGT-~L~a~~~~~~~~~ 61 (264) .+.+++.++.+..--+.-+..-|...... .....+|+++.= +.||- .+.........+. T Consensus 5 ~~~~~VllvdD~~l~~~~L~~~Le~~~~~~~~v~~~~~~~~~~~~~~~~~~dlvl~D~~~~~~~~~~~~~~~~~~~~p~~ 84 (225) T 3klo_A 5 ENKLNVRMLSDVCMQSRLLKEALESKLPLALEITPFSELWLEENKPESRSIQMLVIDYSRISDDVLTDYSSFKHISCPDA 84 (225) T ss_dssp CSSEEEEEESCCSHHHHHHHHHHHHHSSEEEEEECGGGHHHHTTCSGGGGCCEEEEEGGGCCHHHHHHHHHHHHHHCTTC T ss_pred CCCCEEEEEECCHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCC T ss_conf 99998999828799999999999478996499997576899986244258888997236899736999999999758998 Q ss_pred EEEEECC-------------CCCCCCCCCCCHHHHHHHHHHCCCCC Q ss_conf 2994153-------------43320104458789998664201243 Q gi|254780754|r 62 PIYGMNC-------------GSVGFLMNEYCIENLVERLSVAVECT 94 (264) Q Consensus 62 PilGIn~-------------G~lGFL~~~~~~~~~~~~l~~~~~~~ 94 (264) |++-++. |--||+..+.+.+.+.+++..+..+. T Consensus 85 ~vivlt~~~~~~~~~~~~~~Ga~g~l~K~~~~~~L~~ai~~v~~G~ 130 (225) T 3klo_A 85 KEVIINCPQDIEHKLLFKWNNLAGVFYIDDDMDTLIKGMSKILQDE 130 (225) T ss_dssp EEEEEEECTTCCHHHHTTSTTEEEEEETTCCHHHHHHHHHHHHTTC T ss_pred EEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCC T ss_conf 4999961566899999998699599977999999999999984797 No 130 >3n7t_A Macrophage binding protein; seattle structural genomics center for infectious disease, S macrophage, pathogenic fungus, coccidioidomycosis; 2.10A {Coccidioides immitis} Probab=41.25 E-value=16 Score=15.67 Aligned_cols=46 Identities=15% Similarity=0.190 Sum_probs=36.5 Q ss_pred CCCCHHHCCEEEEECCCHHHH---------HHHHHHHHCCCEEEEECCCCCCCCC Q ss_conf 788845577999987954899---------9999974128729941534332010 Q gi|254780754|r 30 GNSTSEEADVIVVLGGDGFML---------QSFHQSKEYDKPIYGMNCGSVGFLM 75 (264) Q Consensus 30 ~~~~~~~~Dlii~iGGDGT~L---------~a~~~~~~~~~PilGIn~G~lGFL~ 75 (264) .+.+.++.|.|+.-||-|.+- +.++.+...++||-.|=.|-.+++. T Consensus 99 ~~v~~~~ydav~~pGG~g~~~dl~~~~~l~~li~~~~~~~k~vaaICHGpa~L~~ 153 (247) T 3n7t_A 99 GDLAPHDYGLMFVCGGHGALYDFPHAKHLQNIAQDIYKRGGVIGAVCHGPAMLPG 153 (247) T ss_dssp GGSCGGGCSEEEECCSTTHHHHGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGGG T ss_pred HHCCHHHCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEECHHHHHHHH T ss_conf 7789867788994798756760244078999999999649909997416799874 No 131 >1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A* Probab=41.25 E-value=16 Score=15.67 Aligned_cols=32 Identities=16% Similarity=0.027 Sum_probs=18.5 Q ss_pred HCCEEEEECCCHHHHHHHHHHHHCCCEEEEECC Q ss_conf 577999987954899999997412872994153 Q gi|254780754|r 36 EADVIVVLGGDGFMLQSFHQSKEYDKPIYGMNC 68 (264) Q Consensus 36 ~~Dlii~iGGDGT~L~a~~~~~~~~~PilGIn~ 68 (264) .+|.++..|++-.+.. ........+|++.+.. T Consensus 96 ~~~~i~~~~~~~~~~~-~~~a~~~~ip~~~~~~ 127 (364) T 1f0k_A 96 KPDVVLGMGGYVSGPG-GLAAWSLGIPVVLHEQ 127 (364) T ss_dssp CCSEEEECSSTTHHHH-HHHHHHTTCCEEEEEC T ss_pred CCCEEEEECCCCCCHH-HHHHHHCCCCEEEEEE T ss_conf 7777998467556869-9997535887899851 No 132 >2ywj_A Glutamine amidotransferase subunit PDXT; uncharacterized conserved protein, structural genomics, NPPSFA; 1.90A {Methanocaldococcus jannaschii DSM2661} Probab=41.20 E-value=16 Score=15.66 Aligned_cols=39 Identities=23% Similarity=0.394 Sum_probs=25.7 Q ss_pred CCHHHCCEEEEECCCHHH-HHH------HHHHHHCCCEEEEECCCC Q ss_conf 884557799998795489-999------999741287299415343 Q gi|254780754|r 32 STSEEADVIVVLGGDGFM-LQS------FHQSKEYDKPIYGMNCGS 70 (264) Q Consensus 32 ~~~~~~Dlii~iGGDGT~-L~a------~~~~~~~~~PilGIn~G~ 70 (264) ++.+++|.+|.-||-..- -+. .+.+...++|+|||=.|. T Consensus 33 ~~l~~~d~lIlpGG~~~~~~~~~~~~~~~~~~~~~~~PiLGIClG~ 78 (186) T 2ywj_A 33 EDLEGIDALIIPGGESTAIGKLMKKYGLLEKIKNSNLPILGTCAGM 78 (186) T ss_dssp GGGTTCSEEEECCSCHHHHHHHHHHTTHHHHHHTCCCCEEEETHHH T ss_pred HHHHCCCEEEECCCCHHHHHHHCCCCCHHHHHHHCCCCEEEECHHH T ss_conf 9971799899999871788876441663899997799889986746 No 133 >2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp} Probab=39.02 E-value=18 Score=15.45 Aligned_cols=87 Identities=10% Similarity=0.167 Sum_probs=46.3 Q ss_pred CCCCCEE--EEEEECCCHHHHHHHHHHHHHCCC-------CC---------------HHHCCEEEEE----CCCHH-HHH Q ss_conf 9876505--999955998999999999987078-------88---------------4557799998----79548-999 Q gi|254780754|r 1 MDRNIQK--IHFKASNAKKAQEAYDKFVKIYGN-------ST---------------SEEADVIVVL----GGDGF-MLQ 51 (264) Q Consensus 1 m~~~~~k--i~i~~~~~~~a~~~~~~l~~~~~~-------~~---------------~~~~Dlii~i----GGDGT-~L~ 51 (264) |+....+ |- +.++++...+......+.++. .+ ...+|+|++= |.||. +++ T Consensus 1 m~~~~~~~~IL-iVDD~~~~~~~l~~~L~~~g~~~~v~~a~~g~eAl~~l~~~~~~~~~~~dliilD~~mP~~~G~el~~ 79 (143) T 2qvg_A 1 MSLAADKVDIL-YLEDDEVDIQSVERVFHKISSLIKIEIAKSGNQALDMLYGRNKENKIHPKLILLDINIPKMNGIEFLK 79 (143) T ss_dssp ------CCSEE-EECCCHHHHHHHHHHHHHHCTTCCEEEESSHHHHHHHHHTCTTCCCCCCSEEEEETTCTTSCHHHHHH T ss_pred CCCCCCCCEEE-EEECCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCHHHHH T ss_conf 99888899899-99799999999999999769984999989999999999841233037987899648788997279999 Q ss_pred HHHHHH-HCCCEEEEECC-------------CCCCCCCCCCCHHHHHHHHH Q ss_conf 999974-12872994153-------------43320104458789998664 Q gi|254780754|r 52 SFHQSK-EYDKPIYGMNC-------------GSVGFLMNEYCIENLVERLS 88 (264) Q Consensus 52 a~~~~~-~~~~PilGIn~-------------G~lGFL~~~~~~~~~~~~l~ 88 (264) ..|... ..++|++-+.. |--+||.-++..+++.+.+. T Consensus 80 ~ir~~~~~~~ipiI~lS~~~~~~~~~~a~~~G~~~~l~KPv~~~~ll~~~~ 130 (143) T 2qvg_A 80 ELRDDSSFTDIEVFVLTAAYTSKDKLAFESLNIRGHLIKPLDYGEAIKLFW 130 (143) T ss_dssp HHTTSGGGTTCEEEEEESCCCHHHHHHHTTTTCCEEEESSCCHHHHHHHHH T ss_pred HHHHCCCCCCCEEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHH T ss_conf 998577779991999978899999999998799899989799999999999 No 134 >3ewn_A THIJ/PFPI family protein; monomer, PSI-II, nysgrc, structural genomics, protein structure initiative; 1.65A {Pseudomonas syringae PV} Probab=38.96 E-value=18 Score=15.44 Aligned_cols=36 Identities=22% Similarity=0.253 Sum_probs=27.2 Q ss_pred HHCCEEEEECCCH-H--------HHHHHHHHHHCCCEEEEECCCC Q ss_conf 5577999987954-8--------9999999741287299415343 Q gi|254780754|r 35 EEADVIVVLGGDG-F--------MLQSFHQSKEYDKPIYGMNCGS 70 (264) Q Consensus 35 ~~~Dlii~iGGDG-T--------~L~a~~~~~~~~~PilGIn~G~ 70 (264) ++.|++++.||.. + ++..++.......++.+|-+|. T Consensus 83 ~~~d~lvvpGG~~~~~~~~~~~~l~~~Lr~~~~~g~~i~aiCtG~ 127 (253) T 3ewn_A 83 RDLTVLFAPGGTDGTLAAASDAETLAFMADRGARAKYITSVCSGS 127 (253) T ss_dssp SSCSEEEECCBSHHHHHHTTCHHHHHHHHHHHTTCSEEEEETTHH T ss_pred CCCEEEEECCCCCCHHHHCCCHHHHHHHHHHHHCCCEEECCCCCC T ss_conf 568799979986214232269999999998623165442367652 No 135 >1rrv_A Glycosyltransferase GTFD; GT-B, rossmann fold; HET: DVV TYD; 2.00A {Amycolatopsis orientalis} SCOP: c.87.1.5 Probab=38.78 E-value=18 Score=15.43 Aligned_cols=29 Identities=10% Similarity=0.176 Sum_probs=13.3 Q ss_pred HCCEEEEECCCHHHHHHHHHHHHCCCEEE Q ss_conf 57799998795489999999741287299 Q gi|254780754|r 36 EADVIVVLGGDGFMLQSFHQSKEYDKPIY 64 (264) Q Consensus 36 ~~Dlii~iGGDGT~L~a~~~~~~~~~Pil 64 (264) ..+..+++..|.....+........+|.. T Consensus 94 ~~~~~~vv~~~~~~~~~~~~a~~~~~~~~ 122 (416) T 1rrv_A 94 GCAAVVAVGDLAAATGVRSVAEKLGLPFF 122 (416) T ss_dssp TCSEEEEEECHHHHHHHHHHHHHHTCCEE T ss_pred HCCCEEEEEECCHHHHHHHHHHHHCCCCC T ss_conf 28980999948415699999998189853 No 136 >2qip_A Protein of unknown function VPA0982; APC85975, structural genomics, PSI-2, protein structure initiative; 1.48A {Vibrio parahaemolyticus rimd 2210633} Probab=37.91 E-value=18 Score=15.34 Aligned_cols=33 Identities=18% Similarity=0.390 Sum_probs=25.7 Q ss_pred HHCCEEEEECCCHHHHHHHHHHHH-CCCEEEEEC Q ss_conf 557799998795489999999741-287299415 Q gi|254780754|r 35 EEADVIVVLGGDGFMLQSFHQSKE-YDKPIYGMN 67 (264) Q Consensus 35 ~~~Dlii~iGGDGT~L~a~~~~~~-~~~PilGIn 67 (264) ++.|.+|.+.|||-|..+++.... .++.|+++. T Consensus 107 ~~~d~~vLvSgDsDf~p~v~~lr~~~gk~V~v~~ 140 (165) T 2qip_A 107 PDVDRVILVSGDGDFSLLVERIQQRYNKKVTVYG 140 (165) T ss_dssp GGCSEEEEECCCGGGHHHHHHHHHHHCCEEEEEE T ss_pred CCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEEE T ss_conf 7689899995776289999999985897899997 No 137 >2a4x_A Mitomycin-binding protein; ALFA/beta protein, mitomycin C-binding protein, bleomycin A2, antimicrobial protein; HET: BLM; 1.40A {Streptomyces caespitosus} SCOP: d.32.1.2 PDB: 2a4w_A* 1kmz_A 1kll_A* Probab=37.47 E-value=19 Score=15.30 Aligned_cols=95 Identities=12% Similarity=0.085 Sum_probs=48.8 Q ss_pred CCCCCEEEEEEECCCHHHHHHHHHHHHHCCCCCHHHCCEEEEECCCHH-HH----HHHHHHHHCCCEEEEECCCCCCCCC Q ss_conf 987650599995599899999999998707888455779999879548-99----9999974128729941534332010 Q gi|254780754|r 1 MDRNIQKIHFKASNAKKAQEAYDKFVKIYGNSTSEEADVIVVLGGDGF-ML----QSFHQSKEYDKPIYGMNCGSVGFLM 75 (264) Q Consensus 1 m~~~~~ki~i~~~~~~~a~~~~~~l~~~~~~~~~~~~Dlii~iGGDGT-~L----~a~~~~~~~~~PilGIn~G~lGFL~ 75 (264) |.-++.-+.+..++.+++.+.++.|--... ...+..+.+....++|+ ++ ...........+-.+-+.-+++|++ T Consensus 1 M~~rl~hi~l~V~Dl~~s~~FY~~LG~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 79 (138) T 2a4x_A 1 MSARISLFAVVVEDMAKSLEFYRKLGVEIP-AEADSAPHTEAVLDGGIRLAWDTVETVRSYDPEWQAPTGGHRFAIAFEF 79 (138) T ss_dssp -CCEEEEEEEEESCHHHHHHHHHTTTCCCC-GGGGGCSEEEEECTTSCEEEEEEHHHHHHHCTTCCCCBSSCSEEEEEEC T ss_pred CCCEEEEEEEEECCHHHHHHHHHHHCCCCE-ECCCCEEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEE T ss_conf 987588999992999999999998579540-0101003579981996599960543222357766777665734688995 Q ss_pred CCCCHHHHHHHHHHCCCCCCCEE Q ss_conf 44587899986642012432034 Q gi|254780754|r 76 NEYCIENLVERLSVAVECTFHPL 98 (264) Q Consensus 76 ~~~~~~~~~~~l~~~~~~~~~~~ 98 (264) .+.+++.+.+.++........ T Consensus 80 --~~v~dl~~~~~~l~~~G~~~~ 100 (138) T 2a4x_A 80 --PDTASVDKKYAELVDAGYEGH 100 (138) T ss_dssp --SSHHHHHHHHHHHHHTTCCEE T ss_pred --CCCHHHHHHHHHHHHCCCEEE T ss_conf --220132345445775595286 No 138 >1iir_A Glycosyltransferase GTFB; rossmann fold; 1.80A {Amycolatopsis orientalis} SCOP: c.87.1.5 Probab=36.85 E-value=19 Score=15.23 Aligned_cols=32 Identities=13% Similarity=0.093 Sum_probs=13.9 Q ss_pred HHCCEEEEECCCHHHHHHHHHHHHCCCEEEEE Q ss_conf 55779999879548999999974128729941 Q gi|254780754|r 35 EEADVIVVLGGDGFMLQSFHQSKEYDKPIYGM 66 (264) Q Consensus 35 ~~~Dlii~iGGDGT~L~a~~~~~~~~~PilGI 66 (264) +.+|.+++.+..-..+-+...+....+|..-. T Consensus 92 ~~~~~~v~~~~~~~~~~~~~~a~~~~~~~~~~ 123 (415) T 1iir_A 92 EGCAAVVTTGLLAAAIGVRSVAEKLGIPYFYA 123 (415) T ss_dssp TTCSEEEEESCHHHHHHHHHHHHHHTCCEEEE T ss_pred CCCCEEEEECCCHHHHHHHHHHHHHCCCCCCC T ss_conf 47995999054413769999999939984035 No 139 >3ca8_A Protein YDCF; two domains, alpha/beta fold, helix bundle, structural genomics, structure 2 function project, S2F, unknown function; 1.80A {Escherichia coli K12} Probab=36.78 E-value=19 Score=15.23 Aligned_cols=43 Identities=14% Similarity=0.347 Sum_probs=30.1 Q ss_pred CCCHHHCCEEEEECCC--HHHHHHHHHHHHCCCEEEEECCCCCCCCC Q ss_conf 8884557799998795--48999999974128729941534332010 Q gi|254780754|r 31 NSTSEEADVIVVLGGD--GFMLQSFHQSKEYDKPIYGMNCGSVGFLM 75 (264) Q Consensus 31 ~~~~~~~Dlii~iGGD--GT~L~a~~~~~~~~~PilGIn~G~lGFL~ 75 (264) ...+..+|+||++||. .+...|++.+.....|++ | +|..|..+ T Consensus 31 ~~~p~~aD~IVvlG~~~l~~~~~A~~L~~~g~a~li-i-sGG~G~~T 75 (266) T 3ca8_A 31 GEVPYQADCVILAGNAVMPTIDAACKIARDQQIPLL-I-SGGIGHST 75 (266) T ss_dssp TTCCCCCSEEEEESCCCHHHHHHHHHHHHHHTCCEE-E-ECCSSTTH T ss_pred CCCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCEE-E-ECCCCCCC T ss_conf 678889998998899821899999999980599889-7-36987553 No 140 >2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, protein structure initiative NDRT; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A* Probab=36.64 E-value=19 Score=15.21 Aligned_cols=34 Identities=9% Similarity=0.146 Sum_probs=26.2 Q ss_pred HHCCEEEEE--------CCCHHHHHHHHHHHHCCCEEEEECCC Q ss_conf 557799998--------79548999999974128729941534 Q gi|254780754|r 35 EEADVIVVL--------GGDGFMLQSFHQSKEYDKPIYGMNCG 69 (264) Q Consensus 35 ~~~Dlii~i--------GGDGT~L~a~~~~~~~~~PilGIn~G 69 (264) ..+|++|++ -..||....-. +...++||++...+ T Consensus 66 ~~~D~via~Ld~f~g~~~D~GT~~EiG~-A~algKPVv~~~~d 107 (161) T 2f62_A 66 KDCDAVIADLSPFRGHEPDCGTAFEVGC-AAALNKMVLTFTSD 107 (161) T ss_dssp HHCSEEEEECCCCSSSSCCHHHHHHHHH-HHHTTCEEEEECSC T ss_pred HHCCEEEEEECCCCCCCCCCCHHHHHHH-HHHCCCEEEEEECC T ss_conf 8799999992377799999888999999-99879959999667 No 141 >3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum} Probab=36.47 E-value=19 Score=15.20 Aligned_cols=89 Identities=8% Similarity=0.156 Sum_probs=48.1 Q ss_pred CCEEEEEEECCCHHHHHHHHHHHHHCCCC----------------CHHHCCEEEEE----C-CCHHHH-HHHHHHH-HCC Q ss_conf 65059999559989999999999870788----------------84557799998----7-954899-9999974-128 Q gi|254780754|r 4 NIQKIHFKASNAKKAQEAYDKFVKIYGNS----------------TSEEADVIVVL----G-GDGFML-QSFHQSK-EYD 60 (264) Q Consensus 4 ~~~ki~i~~~~~~~a~~~~~~l~~~~~~~----------------~~~~~Dlii~i----G-GDGT~L-~a~~~~~-~~~ 60 (264) +|++--.+.++++-..+..+...+.++.. ..+.+|+|++= + .||.-+ +..+... ..+ T Consensus 2 ~~~~~ILiVDD~~~~r~~l~~~L~~~G~~~v~~a~~g~eal~~l~~~~~~dlii~D~~mP~~~~g~~l~~~ir~~~~~~~ 81 (140) T 3lua_A 2 SLDGTVLLIDYFEYEREKTKIIFDNIGEYDFIEVENLKKFYSIFKDLDSITLIIMDIAFPVEKEGLEVLSAIRNNSRTAN 81 (140) T ss_dssp -CCCEEEEECSCHHHHHHHHHHHHHHCCCEEEEECSHHHHHTTTTTCCCCSEEEECSCSSSHHHHHHHHHHHHHSGGGTT T ss_pred CCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCC T ss_conf 99997999949999999999999867990899989999999999738998599986899999988899998764424689 Q ss_pred CEEEEECC-------------CCCCCCCCCCCHHHHHHHHHHCCC Q ss_conf 72994153-------------433201044587899986642012 Q gi|254780754|r 61 KPIYGMNC-------------GSVGFLMNEYCIENLVERLSVAVE 92 (264) Q Consensus 61 ~PilGIn~-------------G~lGFL~~~~~~~~~~~~l~~~~~ 92 (264) +||+.+.. |--+||.-++..+.+...+..... T Consensus 82 ~piI~lT~~~~~~~~~~~~~~G~~d~l~KP~~~~~L~~~i~~~L~ 126 (140) T 3lua_A 82 TPVIIATKSDNPGYRHAALKFKVSDYILKPYPTKRLENSVRSVLK 126 (140) T ss_dssp CCEEEEESCCCHHHHHHHHHSCCSEEEESSCCTTHHHHHHHHHHC T ss_pred CCEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH T ss_conf 988998279999999999986998999898999999999999999 No 142 >3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12} Probab=36.16 E-value=20 Score=15.17 Aligned_cols=65 Identities=12% Similarity=0.239 Sum_probs=36.7 Q ss_pred CCCCC--EEEEEEECCCHHHHHHHHHHHHHCCCC--------------CHHHCCEEEE----ECCCH-HHHHHHHHHHHC Q ss_conf 98765--059999559989999999999870788--------------8455779999----87954-899999997412 Q gi|254780754|r 1 MDRNI--QKIHFKASNAKKAQEAYDKFVKIYGNS--------------TSEEADVIVV----LGGDG-FMLQSFHQSKEY 59 (264) Q Consensus 1 m~~~~--~ki~i~~~~~~~a~~~~~~l~~~~~~~--------------~~~~~Dlii~----iGGDG-T~L~a~~~~~~~ 59 (264) |..-+ +|+-++.++..... ......+..+.. ....+|++++ =|.|| .+++..|.. .. T Consensus 1 m~~pl~g~kILiVDD~~~~r~-~l~~~L~~~g~~v~~a~~g~~Al~~l~~~~~dlvi~D~~mP~~dG~~~~~~ir~~-~~ 78 (130) T 3eod_A 1 MTQPLVGKQILIVEDEQVFRS-LLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLKLLEHIRNR-GD 78 (130) T ss_dssp --CTTTTCEEEEECSCHHHHH-HHHHHHHHTTCEEEEESCHHHHHHHHTTCCCSEEEECCC-----CHHHHHHHHHT-TC T ss_pred CCCCCCCCEEEEEECCHHHHH-HHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEHHHHCCCCCCHHHHHHHHHHH-CC T ss_conf 969889998999969899999-9999999889999998999999999852898874574217999899999999960-98 Q ss_pred CCEEEEEC Q ss_conf 87299415 Q gi|254780754|r 60 DKPIYGMN 67 (264) Q Consensus 60 ~~PilGIn 67 (264) ++|++-+. T Consensus 79 ~~piI~lt 86 (130) T 3eod_A 79 QTPVLVIS 86 (130) T ss_dssp CCCEEEEE T ss_pred CCCEEEEE T ss_conf 99899998 No 143 >1e0t_A Pyruvate kinase, PK; phosphotransferase, glycolysis, allostery; 1.8A {Escherichia coli} SCOP: b.58.1.1 c.1.12.1 c.49.1.1 PDB: 1pky_A 1e0u_A Probab=35.42 E-value=20 Score=15.09 Aligned_cols=52 Identities=19% Similarity=0.109 Sum_probs=35.8 Q ss_pred EEEECCEEEEECCCCHHHHHHHCCCEEEEECCCEEEEECCC--CCCHHHHH---HCCCCCC Q ss_conf 12103507982266504467522981774088605863035--43301111---0027884 Q gi|254780754|r 148 PELVCDGLVVSTPIGSTAYNFSALGPILPLESRHLLLTPVS--PFKPRRWH---GAILPND 203 (264) Q Consensus 148 ~~~~~DGvivSTptGSTAY~lSaGGpIv~p~~~~~~itpI~--p~~l~~~r---plVl~~~ 203 (264) +...++.+++-|-+|.||..+|.--| ..+.+.+||-- ...++.++ |++++.. T Consensus 367 ~~~~AkaIvv~T~SG~tA~~vS~~RP----~~PIiavT~~~~~~r~L~L~~GV~p~~~~~~ 423 (470) T 1e0t_A 367 EKLDAPLIVVATQGGKSARAVRKYFP----DATILALTTNEKTAHQLVLSKGVVPQLVKEI 423 (470) T ss_dssp HHTTCSBEEEECSSSHHHHHHHTTCC----SSBEEEEESCHHHHHHGGGSTTEEEEECSCC T ss_pred HHCCCCEEEEECCCHHHHHHHHHHCC----CCCEEEECCCHHHHHHHHCCCCEEEEEECCC T ss_conf 74077779999597189999983597----9999998898899988643077599980888 No 144 >2a33_A Hypothetical protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT2G37210; 1.95A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4o_A Probab=35.05 E-value=20 Score=15.06 Aligned_cols=63 Identities=11% Similarity=0.044 Sum_probs=32.7 Q ss_pred CCCEEEEEEECC----CHHHHHHHHHHHHHCCCCCHHHCCEEEEECCCHHHHHH-HHHHHHCCCEEEEECCC Q ss_conf 765059999559----98999999999987078884557799998795489999-99974128729941534 Q gi|254780754|r 3 RNIQKIHFKASN----AKKAQEAYDKFVKIYGNSTSEEADVIVVLGGDGFMLQS-FHQSKEYDKPIYGMNCG 69 (264) Q Consensus 3 ~~~~ki~i~~~~----~~~a~~~~~~l~~~~~~~~~~~~Dlii~iGGDGT~L~a-~~~~~~~~~PilGIn~G 69 (264) .++||+.++.+. .+.-.+.++++-+.+.+... -+|.=||.+-+..| ++-+...+-.+.||... T Consensus 11 ~~~k~V~VF~gs~~~~~~~~~~~A~~Lg~~La~~g~----~lV~GGG~~GlMga~a~g~~~~gg~viGi~~~ 78 (215) T 2a33_A 11 SKFRRICVFCGSSQGKKSSYQDAAVDLGNELVSRNI----DLVYGGGSIGLMGLVSQAVHDGGRHVIGIIPK 78 (215) T ss_dssp CSCSEEEEECCSSCCSSHHHHHHHHHHHHHHHHTTC----EEEECCCSSHHHHHHHHHHHHTTCCEEEEEES T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCC----EEEECCCHHHHHHHHHHHHHHCCCCCCCCCCC T ss_conf 368539998867899597899999999999998799----59989975899999998998569952354565 No 145 >3ot1_A 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme; csgid, structural genomics; HET: MSE CSX; 1.16A {Vibrio cholerae o1 biovar el tor} Probab=34.74 E-value=21 Score=15.02 Aligned_cols=39 Identities=18% Similarity=0.248 Sum_probs=27.0 Q ss_pred CHHHCCEEEEECCCHH---------HHHHHHHHHHCCCEEEEECCCCC Q ss_conf 8455779999879548---------99999997412872994153433 Q gi|254780754|r 33 TSEEADVIVVLGGDGF---------MLQSFHQSKEYDKPIYGMNCGSV 71 (264) Q Consensus 33 ~~~~~Dlii~iGGDGT---------~L~a~~~~~~~~~PilGIn~G~l 71 (264) ...++|++++.||.|. ++..++.+.....++.++.+|-. T Consensus 68 ~~~d~d~liipGg~~~~~~l~~~~~l~~~lr~~~~~~~~i~a~~~~~~ 115 (208) T 3ot1_A 68 SAEAFDALALPGGVGGAQAFADSTALLALIDAFSQQGKLVAAICATPA 115 (208) T ss_dssp CGGGCSEEEECCCHHHHHHHHTCHHHHHHHHHHHHTTCEEEEETTHHH T ss_pred CCCCCEEEEECCCCCHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHH T ss_conf 702427998167775576650599999999987542762000346888 No 146 >1dc7_A NTRC, nitrogen regulation protein; receiver domain, phosphorylation, signal transduction, conformational rearrangement; NMR {Salmonella typhimurium} SCOP: c.23.1.1 PDB: 1j56_A 1krw_A 1krx_A 1ntr_A 1dc8_A* Probab=34.42 E-value=13 Score=16.24 Aligned_cols=85 Identities=18% Similarity=0.230 Sum_probs=50.0 Q ss_pred EEEEEECCCHHHHHHHHHHHHH-CCC------------CCHHHCCEEEE----ECCCHH-HHHHHHHHHHCCCEEEEEC- Q ss_conf 5999955998999999999987-078------------88455779999----879548-9999999741287299415- Q gi|254780754|r 7 KIHFKASNAKKAQEAYDKFVKI-YGN------------STSEEADVIVV----LGGDGF-MLQSFHQSKEYDKPIYGMN- 67 (264) Q Consensus 7 ki~i~~~~~~~a~~~~~~l~~~-~~~------------~~~~~~Dlii~----iGGDGT-~L~a~~~~~~~~~PilGIn- 67 (264) +|.++.++..-...+...|... |.. -..+.+|++|+ =|+||. +++.++.. ....|++-+. T Consensus 5 ~ILIVDDd~~~~~~l~~~L~~~g~~v~~a~~~~~a~~~l~~~~~dlii~D~~lp~~~G~el~~~l~~~-~~~~pii~~t~ 83 (124) T 1dc7_A 5 IVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALASKTPDVLLSDIRMPGMDGLALLKQIKQR-HPMLPVIIMTA 83 (124) T ss_dssp CCEEECSSSSHHHHHHHHHTTTTCCCEECCCTTHHHHHSSSCCCSCEEECSCSSHHHHCSTHHHHHHH-CTTSCCCCBCC T ss_pred EEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHH-CCCCEEEEEEC T ss_conf 89999599999999999999889999998999999999983899999875889998459999999985-89991999989 Q ss_pred ------------CCCCCCCCCCCCHHHHHHHHHHCCC Q ss_conf ------------3433201044587899986642012 Q gi|254780754|r 68 ------------CGSVGFLMNEYCIENLVERLSVAVE 92 (264) Q Consensus 68 ------------~G~lGFL~~~~~~~~~~~~l~~~~~ 92 (264) .|--+||.-++..+++...+.++.. T Consensus 84 ~~~~~~~~~a~~~G~~dyl~KP~~~~~L~~~i~~~l~ 120 (124) T 1dc7_A 84 HSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 (124) T ss_dssp STTSTTTTSSCTTCCCCCBCSSCCHHHHHHHHHHHHH T ss_pred CCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH T ss_conf 8999999999986998078397999999999999999 No 147 >2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A Probab=34.40 E-value=21 Score=14.99 Aligned_cols=87 Identities=16% Similarity=0.298 Sum_probs=47.5 Q ss_pred CCE-EEEEEECCCHHHHHHHHHHHHHCCC-----C---------CHHHCCEEEEE-----CCCH-HHHHHHHHHHH-CCC Q ss_conf 650-5999955998999999999987078-----8---------84557799998-----7954-89999999741-287 Q gi|254780754|r 4 NIQ-KIHFKASNAKKAQEAYDKFVKIYGN-----S---------TSEEADVIVVL-----GGDG-FMLQSFHQSKE-YDK 61 (264) Q Consensus 4 ~~~-ki~i~~~~~~~a~~~~~~l~~~~~~-----~---------~~~~~Dlii~i-----GGDG-T~L~a~~~~~~-~~~ 61 (264) +|+ ||.++.++..-+..+...|.. .+- . ..+.+|++++= |-|| .+++..|.... ..+ T Consensus 3 ~M~kkILvVdDd~~~~~~l~~~L~~-~g~~v~~a~~~~~al~~l~~~~pdliilD~~lp~~~~G~~l~~~ir~~~~~~~i 81 (127) T 2gkg_A 3 HMSKKILIVESDTALSATLRSALEG-RGFTVDETTDGKGSVEQIRRDRPDLVVLAVDLSAGQNGYLICGKLKKDDDLKNV 81 (127) T ss_dssp ---CEEEEECSCHHHHHHHHHHHHH-HTCEEEEECCHHHHHHHHHHHCCSEEEEESBCGGGCBHHHHHHHHHHSTTTTTS T ss_pred CCCCCEEEEECCHHHHHHHHHHHHH-CCCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCCC T ss_conf 5588599998999999999999998-799999989999999999847999999975777688899999999838888998 Q ss_pred EEEEEC------------CCCCCCCCCCCCHHHHHHHHHHCC Q ss_conf 299415------------343320104458789998664201 Q gi|254780754|r 62 PIYGMN------------CGSVGFLMNEYCIENLVERLSVAV 91 (264) Q Consensus 62 PilGIn------------~G~lGFL~~~~~~~~~~~~l~~~~ 91 (264) ||+-+. .|--+||+-+++.+++...+.+.. T Consensus 82 Pii~lt~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~L 123 (127) T 2gkg_A 82 PIVIIGNPDGFAQHRKLKAHADEYVAKPVDADQLVERAGALI 123 (127) T ss_dssp CEEEEECGGGHHHHHHSTTCCSEEEESSCCHHHHHHHHHHHH T ss_pred CEEEEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH T ss_conf 389996898599999998699899989899999999999987 No 148 >2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92, PSI-2; 2.10A {Neptuniibacter caesariensis} Probab=34.36 E-value=21 Score=14.98 Aligned_cols=91 Identities=13% Similarity=0.236 Sum_probs=52.0 Q ss_pred CCCCCEE--EEEEECCCHHHHHHHHHHHHHCCC-----C---------CHHHCCEEEE----ECCCHH-HHHHHHHHHHC Q ss_conf 9876505--999955998999999999987078-----8---------8455779999----879548-99999997412 Q gi|254780754|r 1 MDRNIQK--IHFKASNAKKAQEAYDKFVKIYGN-----S---------TSEEADVIVV----LGGDGF-MLQSFHQSKEY 59 (264) Q Consensus 1 m~~~~~k--i~i~~~~~~~a~~~~~~l~~~~~~-----~---------~~~~~Dlii~----iGGDGT-~L~a~~~~~~~ 59 (264) |.++++. +.++. +.+...+..+...+..+. . ....+|+|++ =+.||- +++.++.. .. T Consensus 1 m~m~~~~~~ILiVD-Dd~~~~~~l~~~L~~~g~~v~~a~~~~~Al~~l~~~~~dliilD~~mp~~~G~~~l~~ir~~-~~ 78 (154) T 2rjn_A 1 MSLNYKNYTVMLVD-DEQPILNSLKRLIKRLGCNIITFTSPLDALEALKGTSVQLVISDMRMPEMGGEVFLEQVAKS-YP 78 (154) T ss_dssp ---CCSCCEEEEEC-SCHHHHHHHHHHHHTTTCEEEEESCHHHHHHHHTTSCCSEEEEESSCSSSCHHHHHHHHHHH-CT T ss_pred CCCCCCCCEEEEEE-CCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHHH-CC T ss_conf 98999999899997-99999999999999879989998999999999862899889966888888818999999985-88 Q ss_pred CCEEEEECC-------------CCC-CCCCCCCCHHHHHHHHHHCCCC Q ss_conf 872994153-------------433-2010445878999866420124 Q gi|254780754|r 60 DKPIYGMNC-------------GSV-GFLMNEYCIENLVERLSVAVEC 93 (264) Q Consensus 60 ~~PilGIn~-------------G~l-GFL~~~~~~~~~~~~l~~~~~~ 93 (264) ++|++=+-. |-+ +||.-++..+.+...+.++... T Consensus 79 ~~piI~lt~~~~~~~~~~ai~~Gavd~yL~KP~~~~~L~~~i~~al~~ 126 (154) T 2rjn_A 79 DIERVVISGYADAQATIDAVNRGKISRFLLKPWEDEDVFKVVEKGLQL 126 (154) T ss_dssp TSEEEEEECGGGHHHHHHHHHTTCCSEEEESSCCHHHHHHHHHHHHHH T ss_pred CCCEEEEECCCCHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHHHHHH T ss_conf 997899986699999999997699987788979999999999999999 No 149 >3l3b_A ES1 family protein; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography, isoprenoid biosynthesis; 1.90A {Ehrlichia chaffeensis} Probab=34.21 E-value=21 Score=14.97 Aligned_cols=39 Identities=23% Similarity=0.234 Sum_probs=30.4 Q ss_pred CCCCCHHHCCEEEEECC--------------------CHHHHHHHHHHHHCCCEEEEEC Q ss_conf 07888455779999879--------------------5489999999741287299415 Q gi|254780754|r 29 YGNSTSEEADVIVVLGG--------------------DGFMLQSFHQSKEYDKPIYGMN 67 (264) Q Consensus 29 ~~~~~~~~~Dlii~iGG--------------------DGT~L~a~~~~~~~~~PilGIn 67 (264) +.+.+.++.|.+|.-|| |-.+++.++.+...++|+-.|= T Consensus 100 l~ev~~~dyDaliiPGG~g~a~nL~~~~~~~~~~~~~~~~v~~li~~f~~~~KpiaaIC 158 (242) T 3l3b_A 100 IEQIRVEEFDMLVIPGGYGVAKNFSNLFDEDKENDYILPEFKNAVREFYNAKKPIGAVC 158 (242) T ss_dssp GGGCCGGGCSEEEECCCHHHHHHHBSTTSCC--CCCBCHHHHHHHHHHHHTTCCEEEET T ss_pred HHHCCCCCCCEEEECCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCEEEEC T ss_conf 77889412898998897678877777665183141023899999999998799799987 No 150 >1su1_A Hypothetical protein YFCE; structural genomics, phosphoesterase, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.25A {Escherichia coli} SCOP: d.159.1.7 Probab=33.87 E-value=21 Score=14.93 Aligned_cols=39 Identities=18% Similarity=0.395 Sum_probs=22.4 Q ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHCCCCCHHHCCEEEEECC Q ss_conf 7650599995599899999999998707888455779999879 Q gi|254780754|r 3 RNIQKIHFKASNAKKAQEAYDKFVKIYGNSTSEEADVIVVLGG 45 (264) Q Consensus 3 ~~~~ki~i~~~~~~~a~~~~~~l~~~~~~~~~~~~Dlii~iGG 45 (264) ..||||+++++-.-... .++.+.+.+. .+.+|.++..|- T Consensus 23 ~~mMki~viSDiHgn~~-ale~vl~~~~---~~~~D~ii~lGD 61 (208) T 1su1_A 23 NAMMKLMFASDIHGSLP-ATERVLELFA---QSGAQWLVILGD 61 (208) T ss_dssp --CCEEEEECCCTTBHH-HHHHHHHHHH---HHTCSEEEECSC T ss_pred CCCCEEEEEEECCCCHH-HHHHHHHHHH---HCCCCEEEECCC T ss_conf 83318999931689989-9999999987---569988999166 No 151 >3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin, teicoplanin, ORF1, natural products, antibiotic; HET: UDP; 1.15A {Amycolatopsis orientalis} PDB: 3h4i_A* 1pn3_A* 1pnv_A* Probab=33.68 E-value=21 Score=14.92 Aligned_cols=35 Identities=14% Similarity=0.020 Sum_probs=19.2 Q ss_pred HHCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCC Q ss_conf 55779999879548999999974128729941534 Q gi|254780754|r 35 EEADVIVVLGGDGFMLQSFHQSKEYDKPIYGMNCG 69 (264) Q Consensus 35 ~~~Dlii~iGGDGT~L~a~~~~~~~~~PilGIn~G 69 (264) +.+|++|+-++.-.....+........|+...... T Consensus 91 ~~~D~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (404) T 3h4t_A 91 EGCDAVVTTGLLPAAVAVRSMAEKLGIPYRYTVLS 125 (404) T ss_dssp TTCSEEEEEECHHHHHHHHHHHHHHTCCEEEEESS T ss_pred CCCCEEEECCCCHHHHHHHHHHHHCCCCCEECCCC T ss_conf 79899999997178899999998618872002457 No 152 >3khd_A Pyruvate kinase; malaria, structural genomics, structural genomics consortium, SGC; 2.70A {Plasmodium falciparum 3D7} Probab=33.20 E-value=22 Score=14.87 Aligned_cols=36 Identities=17% Similarity=0.113 Sum_probs=27.5 Q ss_pred EEEECCEEEEECCCCHHHHHHHCCCEEEEECCCEEEEECC Q ss_conf 1210350798226650446752298177408860586303 Q gi|254780754|r 148 PELVCDGLVVSTPIGSTAYNFSALGPILPLESRHLLLTPV 187 (264) Q Consensus 148 ~~~~~DGvivSTptGSTAY~lSaGGpIv~p~~~~~~itpI 187 (264) ....++.+++-|-+|+||..+|.- .|..+.+.+||= T Consensus 415 ~~l~akaIVv~T~SG~TAr~vSr~----RP~~PIiavT~~ 450 (520) T 3khd_A 415 ESIQASLIIALTETGYTARLIAKY----KPSCTILALSAS 450 (520) T ss_dssp HHTTCSEEEEECSSSHHHHHHHHT----CCSSEEEEEESC T ss_pred HHCCCCEEEEECCCCHHHHHHHHH----CCCCCEEEECCC T ss_conf 746999999988985899999954----979998998698 No 153 >1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A Probab=32.58 E-value=22 Score=14.80 Aligned_cols=88 Identities=14% Similarity=0.168 Sum_probs=51.7 Q ss_pred EEEEEEECCCHHHHHHHHHHHHHCCC-------C----------------CHHHCCEEEEE----CCCHH-HHHHHHHHH Q ss_conf 05999955998999999999987078-------8----------------84557799998----79548-999999974 Q gi|254780754|r 6 QKIHFKASNAKKAQEAYDKFVKIYGN-------S----------------TSEEADVIVVL----GGDGF-MLQSFHQSK 57 (264) Q Consensus 6 ~ki~i~~~~~~~a~~~~~~l~~~~~~-------~----------------~~~~~Dlii~i----GGDGT-~L~a~~~~~ 57 (264) ++|.+ ..+++...++.+...+..+. . ....+|+|+.= |.||. +++..|... T Consensus 9 ~~ILi-VdD~~~~~~~l~~~L~~~g~~~~v~~~~~g~eAl~~l~~~~~~~~~~~pdlillD~~mP~~~G~el~~~ir~~~ 87 (149) T 1i3c_A 9 KVILL-VEDSKADSRLVQEVLKTSTIDHELIILRDGLAAMAFLQQQGEYENSPRPNLILLDLNLPKKDGREVLAEIKQNP 87 (149) T ss_dssp EEEEE-ECCCHHHHHHHHHHHHSCCSCEEEEEECSHHHHHHHHTTCGGGTTCCCCSEEEECSCCSSSCHHHHHHHHHHCT T ss_pred CEEEE-EECCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHCCHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHCC T ss_conf 98999-97999999999999997699847999899999999998500221268988899848999986499999998580 Q ss_pred H-CCCEEEEECC-------------CCCCCCCCCCCHHHHHHHHHHCCCCC Q ss_conf 1-2872994153-------------43320104458789998664201243 Q gi|254780754|r 58 E-YDKPIYGMNC-------------GSVGFLMNEYCIENLVERLSVAVECT 94 (264) Q Consensus 58 ~-~~~PilGIn~-------------G~lGFL~~~~~~~~~~~~l~~~~~~~ 94 (264) . ..+||+=+.. |--+||.-++..+++.+.+..+...+ T Consensus 88 ~~~~iPvI~lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~i~~~~ 138 (149) T 1i3c_A 88 DLKRIPVVVLTTSHNEDDVIASYELHVNCYLTKSRNLKDLFKMVQGIESFW 138 (149) T ss_dssp TTTTSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHH T ss_pred CCCCCCEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHH T ss_conf 447998899956899999999998799899979899999999999999988 No 154 >1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A Probab=32.40 E-value=23 Score=14.78 Aligned_cols=85 Identities=12% Similarity=0.207 Sum_probs=47.8 Q ss_pred EEEEEEECCCHHHHHHHHHHHHHCCCC------CH---------HHCCEEEEE----CCCHH-HHHHHHHHH-HCCCEEE Q ss_conf 059999559989999999999870788------84---------557799998----79548-999999974-1287299 Q gi|254780754|r 6 QKIHFKASNAKKAQEAYDKFVKIYGNS------TS---------EEADVIVVL----GGDGF-MLQSFHQSK-EYDKPIY 64 (264) Q Consensus 6 ~ki~i~~~~~~~a~~~~~~l~~~~~~~------~~---------~~~Dlii~i----GGDGT-~L~a~~~~~-~~~~Pil 64 (264) .|+-++ ++++..........+.++.. +. +.+|++++= |.||. +++..|.-. ...+|++ T Consensus 7 lrILiV-DD~~~~~~~l~~~L~~~g~~~v~~a~~~~~al~~~~~~~~dlii~D~~mP~~dG~~l~~~ir~~~~~~~~pii 85 (129) T 1p6q_A 7 IKVLIV-DDQVTSRLLLGDALQQLGFKQITAAGDGEQGMKIMAQNPHHLVISDFNMPKMDGLGLLQAVRANPATKKAAFI 85 (129) T ss_dssp CCEEEE-CSSHHHHHHHHHHHHTTTCSCEECCSSHHHHHHHHHTSCCSEEEECSSSCSSCHHHHHHHHTTCTTSTTCEEE T ss_pred CEEEEE-ECCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCEEE T ss_conf 889999-5989999999999998799299998999999999971899899984588999879999999838566898299 Q ss_pred EECC-------------CCCCCCCCCCCHHHHHHHHHHCC Q ss_conf 4153-------------43320104458789998664201 Q gi|254780754|r 65 GMNC-------------GSVGFLMNEYCIENLVERLSVAV 91 (264) Q Consensus 65 GIn~-------------G~lGFL~~~~~~~~~~~~l~~~~ 91 (264) -+.. |--+||.-+++.+++.+.+.++. T Consensus 86 ~ls~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~i~~vl 125 (129) T 1p6q_A 86 ILTAQGDRALVQKAAALGANNVLAKPFTIEKMKAAIEAVF 125 (129) T ss_dssp ECCSCCCHHHHHHHHHHTCSCEECCCSSHHHHHHHHHHHH T ss_pred EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH T ss_conf 9980499999999998799889989899999999999999 No 155 >1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; HET: NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A* Probab=32.35 E-value=23 Score=14.78 Aligned_cols=40 Identities=8% Similarity=-0.102 Sum_probs=33.4 Q ss_pred HHHCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCC Q ss_conf 4557799998795489999999741287299415343320104 Q gi|254780754|r 34 SEEADVIVVLGGDGFMLQSFHQSKEYDKPIYGMNCGSVGFLMN 76 (264) Q Consensus 34 ~~~~Dlii~iGGDGT~L~a~~~~~~~~~PilGIn~G~lGFL~~ 76 (264) ..++|++|-..+--+....+..+...++|++- ++.|++.+ T Consensus 58 ~~~~DvVve~~~~~~~~~~~~~al~~g~~vv~---~s~g~~~~ 97 (253) T 1j5p_A 58 PSDVSTVVECASPEAVKEYSLQILKNPVNYII---ISTSAFAD 97 (253) T ss_dssp CTTCCEEEECSCHHHHHHHHHHHTTSSSEEEE---CCGGGGGS T ss_pred CCCCCEEEECCCCHHHHHHHHHHHHCCCCEEE---ECCCCCCC T ss_conf 57998999858807999999999973997999---83642457 No 156 >1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A Probab=31.23 E-value=24 Score=14.66 Aligned_cols=90 Identities=16% Similarity=0.317 Sum_probs=50.8 Q ss_pred CCCCCE--EEEEEECCCHHHHHHHHHHHHH-CCC---CC---------HHHCCEEEE----ECCCHH-HHHHHHHHHHCC Q ss_conf 987650--5999955998999999999987-078---88---------455779999----879548-999999974128 Q gi|254780754|r 1 MDRNIQ--KIHFKASNAKKAQEAYDKFVKI-YGN---ST---------SEEADVIVV----LGGDGF-MLQSFHQSKEYD 60 (264) Q Consensus 1 m~~~~~--ki~i~~~~~~~a~~~~~~l~~~-~~~---~~---------~~~~Dlii~----iGGDGT-~L~a~~~~~~~~ 60 (264) |+--|+ ||.++.++..-+..+...|... |.. .+ .+.+|+++. -++||. ++...+. .... T Consensus 1 m~~g~~~pkILiVeDd~~~~~~l~~~L~~~g~~V~~a~~~~ea~~~~~~~~~dlvilD~~lp~~~g~~~~~~~r~-~~~~ 79 (233) T 1ys7_A 1 MDTGVTSPRVLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSATENRPDAIVLDINMPVLDGVSVVTALRA-MDND 79 (233) T ss_dssp ------CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEESSCSSSCHHHHHHHHHH-TTCC T ss_pred CCCCCCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEECCC-CCCC T ss_conf 998999987999979999999999999978999999899999999997479978975223875568622310123-5777 Q ss_pred CEEEEEC-------------CCCCCCCCCCCCHHHHHHHHHHCC Q ss_conf 7299415-------------343320104458789998664201 Q gi|254780754|r 61 KPIYGMN-------------CGSVGFLMNEYCIENLVERLSVAV 91 (264) Q Consensus 61 ~PilGIn-------------~G~lGFL~~~~~~~~~~~~l~~~~ 91 (264) +|++-+. .|--+|++-+++.+++...+.... T Consensus 80 ~~iiilt~~~~~~~~v~al~~GAddyl~KP~~~~eL~a~i~~~~ 123 (233) T 1ys7_A 80 VPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALL 123 (233) T ss_dssp CCEEEEECCCTTTCCCTTTTTTCSEEEESSCCHHHHHHHHHHHH T ss_pred CCEECCCCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH T ss_conf 62331456688999999997799299978998799999999999 No 157 >3o1n_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, lyase; 1.03A {Salmonella enterica subsp} PDB: 3lb0_A* 3l2i_A* 3nnt_A* 3m7w_A* 1gqn_A 1l9w_A* 1qfe_A* Probab=30.15 E-value=23 Score=14.74 Aligned_cols=10 Identities=10% Similarity=-0.134 Sum_probs=3.8 Q ss_pred CCEEEEECCC Q ss_conf 3507982266 Q gi|254780754|r 152 CDGLVVSTPI 161 (264) Q Consensus 152 ~DGvivSTpt 161 (264) +|-+=+++.. T Consensus 190 aDivKiA~~~ 199 (276) T 3o1n_A 190 ADIPKIAVMP 199 (276) T ss_dssp CSEEEEEECC T ss_pred CCEEEEEEEC T ss_conf 9989999806 No 158 >2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene, phosphoprotein, GMP synthetase, guanine monophosphate synthetase, chromosomal rearrangement; HET: XMP; 2.5A {Homo sapiens} Probab=30.05 E-value=25 Score=14.54 Aligned_cols=66 Identities=12% Similarity=0.211 Sum_probs=44.7 Q ss_pred CEEEEEEECCCHHHHHHHHHHHHHC--CC-----CCH-----HHCCEEEEECCCHHHHHH-----HHHHHHCCCEEEEEC Q ss_conf 5059999559989999999999870--78-----884-----557799998795489999-----999741287299415 Q gi|254780754|r 5 IQKIHFKASNAKKAQEAYDKFVKIY--GN-----STS-----EEADVIVVLGGDGFMLQS-----FHQSKEYDKPIYGMN 67 (264) Q Consensus 5 ~~ki~i~~~~~~~a~~~~~~l~~~~--~~-----~~~-----~~~Dlii~iGGDGT~L~a-----~~~~~~~~~PilGIn 67 (264) -.||.++.-..+-++-+++.+.+.- .+ ... .+++-||-=||=++.... .....+.++|||||= T Consensus 29 ~~kIlIlDFGsQYtqLIaRRiRElgVyseI~p~~~~~e~i~~~~p~GIILSGGP~SV~~~~ap~~~~~if~l~iPILGIC 108 (697) T 2vxo_A 29 EGAVVILDAGAQYGKVIDRRVRELFVQSEIFPLETPAFAIKEQGFRAIIISGGPNSVYAEDAPWFDPAIFTIGKPVLGIC 108 (697) T ss_dssp CCCEEEEEEC--CHHHHHHHHHHTTCCEEEEETTCCHHHHHHHTCSEEEEEECC-------CCCCCGGGTTSSCCEEEEE T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHCCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCEEEEC T ss_conf 89899998895499999999985197289977999999996169999998899986779999988999982899989987 Q ss_pred CCC Q ss_conf 343 Q gi|254780754|r 68 CGS 70 (264) Q Consensus 68 ~G~ 70 (264) .|+ T Consensus 109 yG~ 111 (697) T 2vxo_A 109 YGM 111 (697) T ss_dssp HHH T ss_pred HHH T ss_conf 999 No 159 >1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix-turn-helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 Probab=29.80 E-value=25 Score=14.51 Aligned_cols=84 Identities=17% Similarity=0.330 Sum_probs=49.8 Q ss_pred EEEEEEECCCHHHHHHHHHHHHH-CC---CCC---------HHHCCEEEE----ECCCHH-HHHHHHHHHHCCCEEEEEC Q ss_conf 05999955998999999999987-07---888---------455779999----879548-9999999741287299415 Q gi|254780754|r 6 QKIHFKASNAKKAQEAYDKFVKI-YG---NST---------SEEADVIVV----LGGDGF-MLQSFHQSKEYDKPIYGMN 67 (264) Q Consensus 6 ~ki~i~~~~~~~a~~~~~~l~~~-~~---~~~---------~~~~Dlii~----iGGDGT-~L~a~~~~~~~~~PilGIn 67 (264) +||.++.++..-+..+...|... |. ..+ ...+|++|+ -++||. +++..+. .....||+-+. T Consensus 3 ~rILiVeDd~~~~~~l~~~L~~~g~~V~~a~~~~ea~~~~~~~~~dliilD~~lp~~~g~~~~~~ir~-~~~~~pii~ls 81 (225) T 1kgs_A 3 VRVLVVEDERDLADLITEALKKEMFTVDVCYDGEEGMYMALNEPFDVVILDIMLPVHDGWEILKSMRE-SGVNTPVLMLT 81 (225) T ss_dssp CEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHH-TTCCCCEEEEE T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHC-CCCCCCEEECC T ss_conf 61999929999999999999987999999899999999997289989999467765431010122111-34567532023 Q ss_pred C-------------CCCCCCCCCCCHHHHHHHHHHC Q ss_conf 3-------------4332010445878999866420 Q gi|254780754|r 68 C-------------GSVGFLMNEYCIENLVERLSVA 90 (264) Q Consensus 68 ~-------------G~lGFL~~~~~~~~~~~~l~~~ 90 (264) . |--.|+.-++.++++...+... T Consensus 82 ~~~~~~~~~~~l~~Gaddyl~KP~~~~eL~a~i~~~ 117 (225) T 1kgs_A 82 ALSDVEYRVKGLNMGADDYLPKPFDLRELIARVRAL 117 (225) T ss_dssp SSCHHHHHHHTCCCCCSEEEESSCCHHHHHHHHHHH T ss_pred CCCCHHHHHHHHHCCCCEECCCCCCHHHHHHHHHHH T ss_conf 344167899999779985245899999999999999 No 160 >1weh_A Conserved hypothetical protein TT1887; rossman fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus HB8} SCOP: c.129.1.1 Probab=29.53 E-value=25 Score=14.48 Aligned_cols=61 Identities=10% Similarity=0.059 Sum_probs=35.1 Q ss_pred CEEEEEEECCC----HHHHHHHHHHHHHCCCCCHHHCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCC Q ss_conf 50599995599----899999999998707888455779999879548999999974128729941534 Q gi|254780754|r 5 IQKIHFKASNA----KKAQEAYDKFVKIYGNSTSEEADVIVVLGGDGFMLQSFHQSKEYDKPIYGMNCG 69 (264) Q Consensus 5 ~~ki~i~~~~~----~~a~~~~~~l~~~~~~~~~~~~Dlii~iGGDGT~L~a~~~~~~~~~PilGIn~G 69 (264) |+++.++.+.. +...+..+++-+.+.+... -++.=||.|.|=.+++-+...+-.++||... T Consensus 1 mk~V~Vfgss~~~~~~~~~~~a~~lG~~La~~g~----~lv~GGg~G~M~a~a~ga~~~gg~viGi~~~ 65 (171) T 1weh_A 1 MRLLAVFVSSRLSPEDPLYARWVRYGEVLAEEGF----GLACGGYQGGMEALARGVKAKGGLVVGVTAP 65 (171) T ss_dssp CEEEEEECCSSCCTTSHHHHHHHHHHHHHHHTTE----EEEECCSSTHHHHHHHHHHHTTCCEEECCCG T ss_pred CCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCC----EEEECCCHHHHHHHHHHHHHCCCCCCCCCCC T ss_conf 9889999217899898899999999999998899----8998995457799998898658853132112 No 161 >3bbn_B Ribosomal protein S2; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1 Probab=28.90 E-value=26 Score=14.41 Aligned_cols=30 Identities=7% Similarity=0.208 Sum_probs=16.2 Q ss_pred HCCEEEEECCCHHHHHHHHHHHHCCCEEEEE Q ss_conf 5779999879548999999974128729941 Q gi|254780754|r 36 EADVIVVLGGDGFMLQSFHQSKEYDKPIYGM 66 (264) Q Consensus 36 ~~Dlii~iGGDGT~L~a~~~~~~~~~PilGI 66 (264) .||++|++.-+.--. |++.+...++|++|| T Consensus 157 ~Pd~viv~d~~~~~~-ai~Ea~~l~IPvI~i 186 (231) T 3bbn_B 157 LPDIVIIVDQQEEYT-ALRECITLGIPTICL 186 (231) T ss_dssp CCSEEEESCTTTTHH-HHHHHHTTTCCEEEC T ss_pred CCCEEEECCCCCCHH-HHHHHHHCCCCEEEE T ss_conf 997798528632279-999999739987887 No 162 >1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixation regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A* Probab=28.83 E-value=26 Score=14.41 Aligned_cols=86 Identities=15% Similarity=0.185 Sum_probs=51.9 Q ss_pred EEEEEEECCCHHHHHHHHHHHHHCCC-----C---------CHHHCCEEEE----ECCCH-HHHHHHHHHHHCCCEEEEE Q ss_conf 05999955998999999999987078-----8---------8455779999----87954-8999999974128729941 Q gi|254780754|r 6 QKIHFKASNAKKAQEAYDKFVKIYGN-----S---------TSEEADVIVV----LGGDG-FMLQSFHQSKEYDKPIYGM 66 (264) Q Consensus 6 ~ki~i~~~~~~~a~~~~~~l~~~~~~-----~---------~~~~~Dlii~----iGGDG-T~L~a~~~~~~~~~PilGI 66 (264) .|+.++.++..-...+...|.+ .+. . ....+|++++ =|+|| .+++.++.. ..++|++-+ T Consensus 4 ~~ILiVDDd~~~r~~l~~~L~~-~g~~v~~a~~~~~al~~~~~~~~dlvi~D~~mP~~~G~~ll~~ir~~-~~~~pvI~l 81 (126) T 1dbw_A 4 YTVHIVDDEEPVRKSLAFMLTM-NGFAVKMHQSAEAFLAFAPDVRNGVLVTDLRMPDMSGVELLRNLGDL-KINIPSIVI 81 (126) T ss_dssp CEEEEEESSHHHHHHHHHHHHH-TTCEEEEESCHHHHHHHGGGCCSEEEEEECCSTTSCHHHHHHHHHHT-TCCCCEEEE T ss_pred CEEEEEECCHHHHHHHHHHHHH-CCCEEEEECCHHHHHHHHHHCCCCEEECCCCCCCCCCHHHHHHHHHH-CCCCEEEEE T ss_conf 9899996999999999999998-79999998999999999763799879710368888829999999961-999839999 Q ss_pred CC-------------CCCCCCCCCCCHHHHHHHHHHCCCC Q ss_conf 53-------------4332010445878999866420124 Q gi|254780754|r 67 NC-------------GSVGFLMNEYCIENLVERLSVAVEC 93 (264) Q Consensus 67 n~-------------G~lGFL~~~~~~~~~~~~l~~~~~~ 93 (264) .. |--+||.-++..+.+...+.++..+ T Consensus 82 T~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~a~~~ 121 (126) T 1dbw_A 82 TGHGDVPMAVEAMKAGAVDFIEKPFEDTVIIEAIERASEH 121 (126) T ss_dssp ECTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHTT T ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHH T ss_conf 6889999999999879988998969999999999999999 No 163 >2kdd_A Borealin; protein dimer, cell cycle, cell division, centromere, chromosomal protein, cytoplasm, mitosis, nucleus, phosphoprotein, polymorphism; NMR {Homo sapiens} Probab=28.72 E-value=14 Score=16.11 Aligned_cols=24 Identities=33% Similarity=0.421 Sum_probs=15.3 Q ss_pred HHHHHHCCCEEEEECCCEEEEECC Q ss_conf 446752298177408860586303 Q gi|254780754|r 164 TAYNFSALGPILPLESRHLLLTPV 187 (264) Q Consensus 164 TAY~lSaGGpIv~p~~~~~~itpI 187 (264) --|++|+.|+.+.-.-+.++-+|+ T Consensus 6 rVYt~S~NGSPLA~~~ei~itVPv 29 (76) T 2kdd_A 6 RIYNISGNGSPLADSKEIFLTVPV 29 (76) T ss_dssp --------------CCSCEECCCS T ss_pred CEEEEECCCCCCCCCCEEEEEEEC T ss_conf 458872168747887617999752 No 164 >1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 1cye_A 2che_A 2chf_A 2pl9_A* 2pmc_A ... Probab=28.42 E-value=26 Score=14.36 Aligned_cols=88 Identities=15% Similarity=0.320 Sum_probs=49.9 Q ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHCCCCC---------------HHHCCEEEEE----CCCHH-HHHHHHHHH-HCC Q ss_conf 87650599995599899999999998707888---------------4557799998----79548-999999974-128 Q gi|254780754|r 2 DRNIQKIHFKASNAKKAQEAYDKFVKIYGNST---------------SEEADVIVVL----GGDGF-MLQSFHQSK-EYD 60 (264) Q Consensus 2 ~~~~~ki~i~~~~~~~a~~~~~~l~~~~~~~~---------------~~~~Dlii~i----GGDGT-~L~a~~~~~-~~~ 60 (264) +|+| |+-+ .++++...+....+.+.++-.. .+.+|++++= |.||. +++..|... ... T Consensus 2 dk~l-rILi-VDD~~~~r~~l~~~L~~~g~~~v~~a~~g~~a~~~~~~~~~dliilD~~mP~~dG~el~~~ir~~~~~~~ 79 (128) T 1jbe_A 2 DKEL-KFLV-VDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDGLELLKTIRAXXAMSA 79 (128) T ss_dssp CTTC-CEEE-ECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHTTCCCCEEEEESCCSSSCHHHHHHHHHC--CCTT T ss_pred CCCC-EEEE-EECCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCC T ss_conf 9999-9999-9698999999999999879968999899999999976289999999699999998999999997567799 Q ss_pred CEEEEECC-------------CCCCCCCCCCCHHHHHHHHHHCC Q ss_conf 72994153-------------43320104458789998664201 Q gi|254780754|r 61 KPIYGMNC-------------GSVGFLMNEYCIENLVERLSVAV 91 (264) Q Consensus 61 ~PilGIn~-------------G~lGFL~~~~~~~~~~~~l~~~~ 91 (264) +||+-+.. |--+||+-++..+++.+.+.++. T Consensus 80 ~piI~lt~~~~~~~~~~a~~~G~~~~l~KP~~~~~L~~~l~~~l 123 (128) T 1jbe_A 80 LPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIF 123 (128) T ss_dssp CCEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHH T ss_pred CCEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH T ss_conf 93899989899999999998799899989899999999999999 No 165 >2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima} Probab=28.27 E-value=26 Score=14.34 Aligned_cols=85 Identities=14% Similarity=0.323 Sum_probs=49.7 Q ss_pred EEEEEECCCHHHHHHHHHHHHHCCC-----C---------CHHHCCEEEE---ECCCHH-HHHHHHHHHHCCCEEEEECC Q ss_conf 5999955998999999999987078-----8---------8455779999---879548-99999997412872994153 Q gi|254780754|r 7 KIHFKASNAKKAQEAYDKFVKIYGN-----S---------TSEEADVIVV---LGGDGF-MLQSFHQSKEYDKPIYGMNC 68 (264) Q Consensus 7 ki~i~~~~~~~a~~~~~~l~~~~~~-----~---------~~~~~Dlii~---iGGDGT-~L~a~~~~~~~~~PilGIn~ 68 (264) +|. +.++.+......+.+.+..+- . ..+.+|+|++ -|.||. +++..+. ...++||+-+.. T Consensus 6 ~IL-iVDD~~~~~~~l~~~L~~~G~~v~~a~~g~eal~~l~~~~~dlvllD~mp~~dGl~l~~~ir~-~~~~~piI~lT~ 83 (142) T 2qxy_A 6 TVM-VVDESRITFLAVKNALEKDGFNVIWAKNEQEAFTFLRREKIDLVFVDVFEGEESLNLIRRIRE-EFPDTKVAVLSA 83 (142) T ss_dssp EEE-EECSCHHHHHHHHHHHGGGTCEEEEESSHHHHHHHHTTSCCSEEEEECTTTHHHHHHHHHHHH-HCTTCEEEEEES T ss_pred EEE-EEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHH-HCCCCCEEEEEC T ss_conf 699-998989999999999998799999989999999999857999998547863128999999998-689997899973 Q ss_pred -------------CCCCCCCCCCCHHHHHHHHHHCCCC Q ss_conf -------------4332010445878999866420124 Q gi|254780754|r 69 -------------GSVGFLMNEYCIENLVERLSVAVEC 93 (264) Q Consensus 69 -------------G~lGFL~~~~~~~~~~~~l~~~~~~ 93 (264) |--+||.-++..+.+...+.+.... T Consensus 84 ~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~l~~ 121 (142) T 2qxy_A 84 YVDKDLIINSVKAGAVDYILKPFRLDYLLERVKKIISS 121 (142) T ss_dssp CCCHHHHHHHHHHTCSCEEESSCCHHHHHHHHHHHHHC T ss_pred CCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC T ss_conf 58889999999768978997989999999999999856 No 166 >2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway; 2.10A {Thermus thermophilus HB8} PDB: 2ywc_A* Probab=27.69 E-value=12 Score=16.60 Aligned_cols=63 Identities=8% Similarity=0.173 Sum_probs=40.4 Q ss_pred EEEEECCCHHHHHHHHHHHHH--CCC-----CCH-----HHCCEEEEECCCHHHH-----HHHHHHHHCCCEEEEECCCC Q ss_conf 999955998999999999987--078-----884-----5577999987954899-----99999741287299415343 Q gi|254780754|r 8 IHFKASNAKKAQEAYDKFVKI--YGN-----STS-----EEADVIVVLGGDGFML-----QSFHQSKEYDKPIYGMNCGS 70 (264) Q Consensus 8 i~i~~~~~~~a~~~~~~l~~~--~~~-----~~~-----~~~Dlii~iGGDGT~L-----~a~~~~~~~~~PilGIn~G~ 70 (264) |.++....+-++.+++.+.+. |.+ ... .++|-||.=||-|+.. .......+.++|+|||=.|+ T Consensus 2 IlIlDfGsQytqlIaRriRElgvyseI~P~~~~~eei~~~~p~GIILSGGP~SV~d~~~~~~~~~i~~~~IPILGICyG~ 81 (503) T 2ywb_A 2 VLVLDFGSQYTRLIARRLRELRAFSLILPGDAPLEEVLKHRPQALILSGGPRSVFDPDAPRPDPRLFSSGLPLLGICYGM 81 (503) T ss_dssp EEEEESSCTTHHHHHHHHHTTTCCEEEEETTCCHHHHHTTCCSEEEECCCSSCSSCTTCCCCCGGGGCSSCCEEEETHHH T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHCCCCCEEEECHHH T ss_conf 89998897299999999998698399986989999997169899998999987345898503199883999699981899 No 167 >1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A Probab=27.69 E-value=27 Score=14.28 Aligned_cols=86 Identities=10% Similarity=0.277 Sum_probs=45.7 Q ss_pred EEEEEEECCCHHHHHHHHHHHHHCCCC--------------CHHHCCEEEEE----CCCHH-HHHHHHHHH-HCCCEEEE Q ss_conf 059999559989999999999870788--------------84557799998----79548-999999974-12872994 Q gi|254780754|r 6 QKIHFKASNAKKAQEAYDKFVKIYGNS--------------TSEEADVIVVL----GGDGF-MLQSFHQSK-EYDKPIYG 65 (264) Q Consensus 6 ~ki~i~~~~~~~a~~~~~~l~~~~~~~--------------~~~~~Dlii~i----GGDGT-~L~a~~~~~-~~~~PilG 65 (264) ||+-++ .+++...+......+..+-. ....+|+|+.= +.||. +++..|.-. ..++||+- T Consensus 2 kriLiV-dD~~~~~~~l~~~L~~~g~~v~~a~~g~~al~~~~~~~pdlillD~~mp~~~G~el~~~ir~~~~~~~iPii~ 80 (124) T 1mb3_A 2 KKVLIV-EDNELNMKLFHDLLEAQGYETLQTREGLSALSIARENKPDLILMDIQLPEISGLEVTKWLKEDDDLAHIPVVA 80 (124) T ss_dssp CEEEEE-CSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHHCCSEEEEESBCSSSBHHHHHHHHHHSTTTTTSCEEE T ss_pred CEEEEE-ECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCCCCEEE T ss_conf 759999-5899999999999998799999989999999999837999999789999984799999998288779996899 Q ss_pred ECC-------------CCCCCCCCCCCHHHHHHHHHHCCC Q ss_conf 153-------------433201044587899986642012 Q gi|254780754|r 66 MNC-------------GSVGFLMNEYCIENLVERLSVAVE 92 (264) Q Consensus 66 In~-------------G~lGFL~~~~~~~~~~~~l~~~~~ 92 (264) +.. |--+||+-+++.+++...+.+... T Consensus 81 ls~~~~~~~~~~~~~~G~~~yl~KP~~~~~L~~~l~~~l~ 120 (124) T 1mb3_A 81 VTAFAMKGDEERIREGGCEAYISKPISVVHFLETIKRLLE 120 (124) T ss_dssp EC------CHHHHHHHTCSEEECSSCCHHHHHHHHHHHHS T ss_pred EECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH T ss_conf 9898998999999977998999898999999999999983 No 168 >2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A Probab=27.53 E-value=27 Score=14.26 Aligned_cols=91 Identities=18% Similarity=0.253 Sum_probs=49.0 Q ss_pred CCCCCEEEEEEECCCHHHHHHHHHHHHH-CCC---CC---------HHHCCEEEEE----CCCHHHHHHHHHHHHCCCEE Q ss_conf 9876505999955998999999999987-078---88---------4557799998----79548999999974128729 Q gi|254780754|r 1 MDRNIQKIHFKASNAKKAQEAYDKFVKI-YGN---ST---------SEEADVIVVL----GGDGFMLQSFHQSKEYDKPI 63 (264) Q Consensus 1 m~~~~~ki~i~~~~~~~a~~~~~~l~~~-~~~---~~---------~~~~Dlii~i----GGDGT~L~a~~~~~~~~~Pi 63 (264) |+.-.+||.++.++..-+..+.+.|... |.. .. ...+|++|.= |+||.-+-.... .....|+ T Consensus 1 m~~Mk~kILiVeDd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~~~~DliilD~~lp~~~g~~~~~~~r-~~~~~~i 79 (238) T 2gwr_A 1 MDTMRQRILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVRELRPDLVLLDLMLPGMNGIDVCRVLR-ADSGVPI 79 (238) T ss_dssp -CCCCCEEEEECSCHHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHCCSEEEEESSCSSSCHHHHHHHHH-TTCCCCE T ss_pred CCCCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEECCC-CCCCCCC T ss_conf 976687499993999999999999997799999989999999999837999999916776668871231122-3566531 Q ss_pred EEEC-------------CCCCCCCCCCCCHHHHHHHHHHCCC Q ss_conf 9415-------------3433201044587899986642012 Q gi|254780754|r 64 YGMN-------------CGSVGFLMNEYCIENLVERLSVAVE 92 (264) Q Consensus 64 lGIn-------------~G~lGFL~~~~~~~~~~~~l~~~~~ 92 (264) +=+. .|--.|++-+++++++...+..... T Consensus 80 Iilt~~~~~~~~~~al~~Gaddyl~KP~~~~eL~ari~a~lr 121 (238) T 2gwr_A 80 VMLTAKTDTVDVVLGLESGADDYIMKPFKPKELVARVRARLR 121 (238) T ss_dssp EEEEETTCCSCHHHHHHTTCCEEEEESCCHHHHHHHHHHHCC T ss_pred CCCCCCCCHHHHHHHHHCCCCEECCCCCCHHHHHHHHHHHHC T ss_conf 101258999999999977998802189999999999999963 No 169 >3er6_A Putative transcriptional regulator protein; structural genomics, unknown function, DNA-binding, transcription regulation, PSI-2; 1.90A {Vibrio parahaemolyticus} Probab=26.75 E-value=28 Score=14.17 Aligned_cols=36 Identities=6% Similarity=0.135 Sum_probs=26.2 Q ss_pred HHCCEEEEECCCH----------HHHHHHHHHHHCCCEEEEECCCC Q ss_conf 5577999987954----------89999999741287299415343 Q gi|254780754|r 35 EEADVIVVLGGDG----------FMLQSFHQSKEYDKPIYGMNCGS 70 (264) Q Consensus 35 ~~~Dlii~iGGDG----------T~L~a~~~~~~~~~PilGIn~G~ 70 (264) +..|++++-||-| .++..++.......+|.+|-+|. T Consensus 73 ~~~Dilivpg~~~~~~~~~~~~~~l~~~L~~~~~~g~~i~aic~Ga 118 (209) T 3er6_A 73 DFTNILIIGSIGDPLESLDKIDPALFDWIRELHLKGSKIVAIDTGI 118 (209) T ss_dssp SCCSEEEECCCSCHHHHGGGSCHHHHHHHHHHHHTTCEEEEETTHH T ss_pred CCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEECHHH T ss_conf 7103776424677641223489999999999987498898413789 No 170 >1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A Probab=26.28 E-value=29 Score=14.12 Aligned_cols=85 Identities=16% Similarity=0.310 Sum_probs=53.8 Q ss_pred EEEEEECCCHHHHHHHHHHHHHCCC--------------CCHHHCCEEEE----ECCCH-HHHHHHHHHHHCCCEEEEEC Q ss_conf 5999955998999999999987078--------------88455779999----87954-89999999741287299415 Q gi|254780754|r 7 KIHFKASNAKKAQEAYDKFVKIYGN--------------STSEEADVIVV----LGGDG-FMLQSFHQSKEYDKPIYGMN 67 (264) Q Consensus 7 ki~i~~~~~~~a~~~~~~l~~~~~~--------------~~~~~~Dlii~----iGGDG-T~L~a~~~~~~~~~PilGIn 67 (264) +|.++. +.+........+.+..+- -....+|+|++ =|.|| .+++.++.. ..++||+=+. T Consensus 5 ~ILiVD-Dd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~dliilD~~mP~~dGle~~~~ir~~-~~~~pvI~lT 82 (155) T 1qkk_A 5 SVFLID-DDRDLRKAMQQTLELAGFTVSSFASATEALAGLSADFAGIVISDIRMPGMDGLALFRKILAL-DPDLPMILVT 82 (155) T ss_dssp EEEEEC-SCHHHHHHHHHHHHHTTCEEEEESCHHHHHHTCCTTCCSEEEEESCCSSSCHHHHHHHHHHH-CTTSCEEEEE T ss_pred EEEEEE-CCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEECCCCCCCCCHHHHHHHHHHH-CCCCCEEEEE T ss_conf 899995-99999999999999879989997899999998532698777654578999899999999972-9899489897 Q ss_pred -------------CCCCCCCCCCCCHHHHHHHHHHCCCC Q ss_conf -------------34332010445878999866420124 Q gi|254780754|r 68 -------------CGSVGFLMNEYCIENLVERLSVAVEC 93 (264) Q Consensus 68 -------------~G~lGFL~~~~~~~~~~~~l~~~~~~ 93 (264) .|-.+||.-++..+.+.+.+.++... T Consensus 83 ~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~~~~ 121 (155) T 1qkk_A 83 GHGDIPMAVQAIQDGAYDFIAKPFAADRLVQSARRAEEK 121 (155) T ss_dssp CGGGHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHH T ss_pred CCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHH T ss_conf 989999999999869988975999999999999999999 No 171 >3ehd_A Uncharacterized conserved protein; PSI,MCSG,PF05014, structural genomics, protein structure initiative; HET: MSE; 2.15A {Enterococcus faecalis} Probab=25.91 E-value=29 Score=14.08 Aligned_cols=34 Identities=18% Similarity=0.234 Sum_probs=26.0 Q ss_pred HHCCEEEE-ECCC----HHHHHHHHHHHHCCCEEEEECCC Q ss_conf 55779999-8795----48999999974128729941534 Q gi|254780754|r 35 EEADVIVV-LGGD----GFMLQSFHQSKEYDKPIYGMNCG 69 (264) Q Consensus 35 ~~~Dlii~-iGGD----GT~L~a~~~~~~~~~PilGIn~G 69 (264) +++|++|+ +.|. ||...... +...++||+|+.+. T Consensus 68 ~~aD~via~ldg~~~D~GT~~EiG~-A~algkpvi~~~~D 106 (162) T 3ehd_A 68 LASDLLVALLDGPTIDAGVASEIGV-AYAKGIPVVALYTD 106 (162) T ss_dssp HTCSEEEEECCSSSCCHHHHHHHHH-HHHTTCCEEEECCC T ss_pred HHCCEEEEECCCCCCCCCHHHHHHH-HHHCCCEEEEEECC T ss_conf 8699999984899999888999999-99869959999635 No 172 >2yr1_A 3-dehydroquinate dehydratase; amino acid biosynthesis, 3-dehydroquinase, structural genomics, NPPSFA; 2.00A {Geobacillus kaustophilus HTA426} Probab=25.57 E-value=30 Score=14.04 Aligned_cols=15 Identities=20% Similarity=-0.104 Sum_probs=6.8 Q ss_pred EECCEEEEECCCCHH Q ss_conf 103507982266504 Q gi|254780754|r 150 LVCDGLVVSTPIGST 164 (264) Q Consensus 150 ~~~DGvivSTptGST 164 (264) +.+|=+=++|..-|- T Consensus 168 ~gaDivKia~~~~~~ 182 (257) T 2yr1_A 168 YGADIAKVAVMPKSP 182 (257) T ss_dssp TTCSEEEEEECCSSH T ss_pred HCCCEEEEEEECCCH T ss_conf 289999999857988 No 173 >1thg_A Lipase; hydrolase(carboxylic esterase); HET: NAG NDG; 1.80A {Galactomyces geotrichum} SCOP: c.69.1.17 Probab=25.28 E-value=30 Score=14.00 Aligned_cols=38 Identities=21% Similarity=0.265 Sum_probs=28.6 Q ss_pred CEEEEECCC----------HHHHHHHHHHHHCCCEEEEEC--CCCCCCCC Q ss_conf 799998795----------489999999741287299415--34332010 Q gi|254780754|r 38 DVIVVLGGD----------GFMLQSFHQSKEYDKPIYGMN--CGSVGFLM 75 (264) Q Consensus 38 Dlii~iGGD----------GT~L~a~~~~~~~~~PilGIn--~G~lGFL~ 75 (264) =+|...||. |+.+.....+...++-++.|| +|-+|||. T Consensus 124 V~v~ihGG~f~~G~~~~~~~~~~~~~~~~~~~~vvvVtinYRlg~~Gfl~ 173 (544) T 1thg_A 124 VMVWIYGGAFVYGSSAAYPGNSYVKESINMGQPVVFVSINYRTGPFGFLG 173 (544) T ss_dssp EEEEECCCTTCCSGGGGCCSHHHHHHHHHTTCCCEEEEECCCCHHHHHCC T ss_pred EEEEEECCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEEECCCCCCCCCCC T ss_conf 69998688646777866787301157775379979996277755314778 No 174 >3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes} Probab=25.16 E-value=30 Score=13.99 Aligned_cols=13 Identities=15% Similarity=0.337 Sum_probs=5.9 Q ss_pred CCEEEEECCCCHH Q ss_conf 3507982266504 Q gi|254780754|r 152 CDGLVVSTPIGST 164 (264) Q Consensus 152 ~DGvivSTptGST 164 (264) ..++++-|.+|+- T Consensus 112 ~G~v~~G~SAGA~ 124 (206) T 3l4e_A 112 AGKLYIGESAGAV 124 (206) T ss_dssp TTCEEEEETHHHH T ss_pred CCCEEEEECHHHH T ss_conf 7978999875887 No 175 >3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer, structural genomics, structural proteomics in europe, spine; 2.70A {Klebsiella pneumoniae} Probab=24.94 E-value=30 Score=13.96 Aligned_cols=21 Identities=29% Similarity=0.389 Sum_probs=15.7 Q ss_pred HCCEEEEECCCHHHHHHHHHHH Q ss_conf 5779999879548999999974 Q gi|254780754|r 36 EADVIVVLGGDGFMLQSFHQSK 57 (264) Q Consensus 36 ~~Dlii~iGGDGT~L~a~~~~~ 57 (264) ++|+||.+|| |..+-+++... T Consensus 92 ~~D~IiavGG-Gs~iD~aK~va 112 (387) T 3bfj_A 92 QCDIIVTVGG-GSPHDCGKGIG 112 (387) T ss_dssp TCCEEEEEES-HHHHHHHHHHH T ss_pred CCCEEEECCC-CCCCCHHHHHH T ss_conf 9988998088-64000888899 No 176 >1llf_A Lipase 3; candida cylindracea cholesterol esterase, sterol ester acylhydrolase,; HET: NAG F23; 1.40A {Candida cylindracea} SCOP: c.69.1.17 PDB: 1cle_A* 1lpm_A* 1lpn_A* 1lpo_A* 1lpp_A* 1lps_A* 1crl_A* 1trh_A* 1gz7_A* Probab=24.06 E-value=32 Score=13.86 Aligned_cols=38 Identities=18% Similarity=0.160 Sum_probs=27.7 Q ss_pred CEEEEECCC----------HHHHHHHHHHHHCCCEEEEEC--CCCCCCCC Q ss_conf 799998795----------489999999741287299415--34332010 Q gi|254780754|r 38 DVIVVLGGD----------GFMLQSFHQSKEYDKPIYGMN--CGSVGFLM 75 (264) Q Consensus 38 Dlii~iGGD----------GT~L~a~~~~~~~~~PilGIn--~G~lGFL~ 75 (264) =+|...||- |+.|.+.......++-++.|| +|-+|||. T Consensus 116 V~V~ihGG~f~~gs~~~~~~~~~~~~~~~~~~~vVvVt~nYRLg~~Gfl~ 165 (534) T 1llf_A 116 VMLWIFGGGFEIGSPTIFPPAQMVTKSVLMGKPIIHVAVNYRVASWGFLA 165 (534) T ss_dssp EEEEECCSTTTSCCGGGSCCHHHHHHHHHTTCCCEEEEECCCCHHHHHCC T ss_pred EEEEECCCCCCCCCCCCCCCHHHCCHHHHCCCCEEEEEECCCCCCCCCCC T ss_conf 99997988445788867780442112343158989999676645466667 No 177 >2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3} Probab=23.88 E-value=32 Score=13.84 Aligned_cols=90 Identities=10% Similarity=0.235 Sum_probs=55.8 Q ss_pred CCEEEEEEECCCHHHHHHHHHHHH-HCCC------C----------CHHHCCEEEE----ECCCHH-HHHHHHHHHHCCC Q ss_conf 650599995599899999999998-7078------8----------8455779999----879548-9999999741287 Q gi|254780754|r 4 NIQKIHFKASNAKKAQEAYDKFVK-IYGN------S----------TSEEADVIVV----LGGDGF-MLQSFHQSKEYDK 61 (264) Q Consensus 4 ~~~ki~i~~~~~~~a~~~~~~l~~-~~~~------~----------~~~~~Dlii~----iGGDGT-~L~a~~~~~~~~~ 61 (264) .|.+|.+ .++.+...+..+.+.+ .... . ....+|+++. =|+||. +++.++.. ..++ T Consensus 2 ~~~~VLI-vDD~~~~r~~l~~~L~~~~~~~~v~~a~~~~eal~~l~~~~~~DlvllD~~mP~~~G~e~l~~ir~~-~p~~ 79 (154) T 2qsj_A 2 SLTVVLI-VDDHHLIRAGAKNLLEGAFSGMRVEGAETVSDALAFLEADNTVDLILLDVNLPDAEAIDGLVRLKRF-DPSN 79 (154) T ss_dssp -CEEEEE-ECSCHHHHHHHHHHHHHHCTTEEEEEESSHHHHHHHHHTTCCCSEEEECC------CHHHHHHHHHH-CTTS T ss_pred CCCEEEE-EECCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHH-CCCC T ss_conf 9999999-9499999999999997289984999966899999999745999789980888998889999999987-8899 Q ss_pred EEEEEC-------------CCCCCCCCCCCCHHHHHHHHHHCCCCCC Q ss_conf 299415-------------3433201044587899986642012432 Q gi|254780754|r 62 PIYGMN-------------CGSVGFLMNEYCIENLVERLSVAVECTF 95 (264) Q Consensus 62 PilGIn-------------~G~lGFL~~~~~~~~~~~~l~~~~~~~~ 95 (264) ||+=+. .|--|||.-+++.+++.+++.++..+.. T Consensus 80 ~iivlT~~~~~~~~~~a~~~Ga~gyl~K~~~~~~L~~aI~~v~~g~~ 126 (154) T 2qsj_A 80 AVALISGETDHELIRAALEAGADGFIPKSADPQVLIHAVSLILEGEI 126 (154) T ss_dssp EEEEC-----CHHHHHHHHTTCCBBCCTTSCHHHHHHHHHHHHTTCC T ss_pred CEEEEEEECCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCC T ss_conf 79999802899999999985998899799999999999999987998 No 178 >2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii} Probab=23.15 E-value=22 Score=14.91 Aligned_cols=21 Identities=14% Similarity=0.089 Sum_probs=12.7 Q ss_pred CCEEEEECCCCHHHHHHHCCC Q ss_conf 350798226650446752298 Q gi|254780754|r 152 CDGLVVSTPIGSTAYNFSALG 172 (264) Q Consensus 152 ~DGvivSTptGSTAY~lSaGG 172 (264) .-.+++...|-..+..+...+ T Consensus 220 ~~~~ii~~~t~~~~~~~~~~l 240 (337) T 2z0m_A 220 DKGVIVFVRTRNRVAKLVRLF 240 (337) T ss_dssp CSSEEEECSCHHHHHHHHTTC T ss_pred CCEEEEEEEEEHHHHHHHHHH T ss_conf 862999998513579999865 No 179 >1f8y_A Nucleoside 2-deoxyribosyltransferase; active site, alpha/beta protein, biocatalyst, X- RAY crystallography; HET: 5MD; 2.40A {Lactobacillus leichmannii} SCOP: c.23.14.1 PDB: 1f8x_A* Probab=22.95 E-value=33 Score=13.72 Aligned_cols=34 Identities=12% Similarity=0.025 Sum_probs=25.8 Q ss_pred HHCCEEEEE-CCC----HHHHHHHHHHHHCCCEEEEECCC Q ss_conf 557799998-795----48999999974128729941534 Q gi|254780754|r 35 EEADVIVVL-GGD----GFMLQSFHQSKEYDKPIYGMNCG 69 (264) Q Consensus 35 ~~~Dlii~i-GGD----GT~L~a~~~~~~~~~PilGIn~G 69 (264) +++|++|++ .|+ ||...... +...++|++++..+ T Consensus 77 ~~aD~vva~l~~~~~d~Gt~~E~G~-A~a~~kpvi~~~~~ 115 (157) T 1f8y_A 77 KTNDIMLGVYIPDEEDVGLGMELGY-ALSQGKYVLLVIPD 115 (157) T ss_dssp HTSSEEEEECCGGGCCHHHHHHHHH-HHHTTCEEEEEECG T ss_pred HHCCEEEEEECCCCCCCCHHHHHHH-HHHCCCCEEEEECC T ss_conf 8689999995898798667999999-99879968999668 No 180 >1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A* Probab=22.63 E-value=34 Score=13.68 Aligned_cols=85 Identities=15% Similarity=0.325 Sum_probs=39.4 Q ss_pred EEEEEEECCCHHHHHHHHHHHHHCCC-------CCH---------HHCCEEEE----ECCCHH-HHHHHHHHHHCCCEEE Q ss_conf 05999955998999999999987078-------884---------55779999----879548-9999999741287299 Q gi|254780754|r 6 QKIHFKASNAKKAQEAYDKFVKIYGN-------STS---------EEADVIVV----LGGDGF-MLQSFHQSKEYDKPIY 64 (264) Q Consensus 6 ~ki~i~~~~~~~a~~~~~~l~~~~~~-------~~~---------~~~Dlii~----iGGDGT-~L~a~~~~~~~~~Pil 64 (264) +|+.+ .++++...+..+.+....+. .+. +.+|+++. =|.||. +++.++......+||+ T Consensus 3 ~rvLi-vDD~~~~~~~l~~~L~~~~~~~~v~~a~~g~eal~~~~~~~pdlvllD~~mP~~dG~el~~~ir~~~~~~~~ii 81 (130) T 1dz3_A 3 IKVCI-ADDNRELVSLLDEYISSQPDMEVIGTAYNGQDCLQMLEEKRPDILLLDIIMPHLDGLAVLERIRAGFEHQPNVI 81 (130) T ss_dssp EEEEE-ECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHHHCSSCCEEE T ss_pred CEEEE-EECCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCCEEE T ss_conf 63999-97999999999999985899379999899999999998559999998289999988999999985599999799 Q ss_pred EECC-------------CCCCCCCCCCCHHHHHHHHHHCC Q ss_conf 4153-------------43320104458789998664201 Q gi|254780754|r 65 GMNC-------------GSVGFLMNEYCIENLVERLSVAV 91 (264) Q Consensus 65 GIn~-------------G~lGFL~~~~~~~~~~~~l~~~~ 91 (264) -+.. |--+||.-+++.+++.+.+.++. T Consensus 82 ~~t~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~~ 121 (130) T 1dz3_A 82 MLTAFGQEDVTKKAVELGASYFILKPFDMENLAHHIRQVY 121 (130) T ss_dssp EEEETTCHHHHHHHHHTTCEEEEECSSCCTTHHHHHHHHH T ss_pred EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH T ss_conf 9978999999999998699799979999999999999998 No 181 >1rw7_A YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI superfamily, unknown function; 1.80A {Saccharomyces cerevisiae} SCOP: c.23.16.2 PDB: 1qvv_A* 1qvz_A 1qvw_A Probab=22.38 E-value=34 Score=13.65 Aligned_cols=45 Identities=9% Similarity=0.117 Sum_probs=34.8 Q ss_pred CCCCHHHCCEEEEECCCHHH---------HHHHHHHHHCCCEEEEECCCCCCCC Q ss_conf 78884557799998795489---------9999997412872994153433201 Q gi|254780754|r 30 GNSTSEEADVIVVLGGDGFM---------LQSFHQSKEYDKPIYGMNCGSVGFL 74 (264) Q Consensus 30 ~~~~~~~~Dlii~iGGDGT~---------L~a~~~~~~~~~PilGIn~G~lGFL 74 (264) .+.++++.|.++.-||=|.+ .+.++.+...++|+..|-.|-..++ T Consensus 92 ~~v~~~~ydav~ipGG~g~~~dl~~~~~l~~~~~~~~~~~k~v~aiChgp~~L~ 145 (243) T 1rw7_A 92 KEVNADDYQIFFASAGHGTLFDYPKAKDLQDIASEIYANGGVVAAVCHGPAIFD 145 (243) T ss_dssp GGCCGGGEEEEEECCSTTHHHHGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGT T ss_pred HHCCHHHCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHH T ss_conf 788986786899569960376624302455999999976993688612168887 No 182 >2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A Probab=22.33 E-value=34 Score=13.65 Aligned_cols=62 Identities=16% Similarity=0.267 Sum_probs=39.5 Q ss_pred EEEEEEECCCHHHHHHHHHHHHHCCCCCHHHCCEEEEECCCHHHHHHHHHHHH--CCCEEEEECCC Q ss_conf 05999955998999999999987078884557799998795489999999741--28729941534 Q gi|254780754|r 6 QKIHFKASNAKKAQEAYDKFVKIYGNSTSEEADVIVVLGGDGFMLQSFHQSKE--YDKPIYGMNCG 69 (264) Q Consensus 6 ~ki~i~~~~~~~a~~~~~~l~~~~~~~~~~~~Dlii~iGGDGT~L~a~~~~~~--~~~PilGIn~G 69 (264) .++.+-.+...+-..+.+.+.++|...+ .|||+++=||=|-+=.|.+.... ..+|+++..-. T Consensus 56 R~y~ik~~~~dDy~~m~evl~Rr~~~~~--~PDLilIDGGkgQL~~a~~~l~~~~~~i~~~~~~k~ 119 (220) T 2nrt_A 56 RRYKIEQDHPDDYESIRTVVKRRYSKHP--LPNLLFVDGGIGQVNAAIEALKEIGKDCPVVGLAKK 119 (220) T ss_dssp EEEEEECSSCCHHHHHHHHHHHHHTTSC--CCSEEEESSSHHHHHHHHHHHHHTTCCCCEEEECTT T ss_pred HHHCCCCCCCHHHHHHHHHHHHHCCCCC--CCEEEEEECCHHHHHHHHHHHHHCCCCCHHHCCCCC T ss_conf 6625788897079999999998304589--985899819999999999998740776212203565 No 183 >1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1 Probab=22.06 E-value=35 Score=13.61 Aligned_cols=59 Identities=22% Similarity=0.336 Sum_probs=35.5 Q ss_pred HCCEEEE----ECCCHH-HHHHHHHHH-HCCCEEEEECC-------------CCCCCCCCCCCHHHHHHHHHHCCCCC Q ss_conf 5779999----879548-999999974-12872994153-------------43320104458789998664201243 Q gi|254780754|r 36 EADVIVV----LGGDGF-MLQSFHQSK-EYDKPIYGMNC-------------GSVGFLMNEYCIENLVERLSVAVECT 94 (264) Q Consensus 36 ~~Dlii~----iGGDGT-~L~a~~~~~-~~~~PilGIn~-------------G~lGFL~~~~~~~~~~~~l~~~~~~~ 94 (264) .+|+|+. =|-||. +++..|... ..++||+-+.. |--+|+.-++..+++.+.+......+ T Consensus 62 ~pdlvllD~~mP~~dG~el~~~ir~~~~~~~iPvI~lT~~~~~~~~~~~~~~Ga~~yl~KP~~~~~L~~~i~~~l~~~ 139 (149) T 1k66_A 62 RPAVILLDLNLPGTDGREVLQEIKQDEVLKKIPVVIMTTSSNPKDIEICYSYSISSYIVKPLEIDRLTETVQTFIKYW 139 (149) T ss_dssp CCSEEEECSCCSSSCHHHHHHHHTTSTTGGGSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHH T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHH T ss_conf 999899808899998589999998586669995899978999999999998799799979899999999999999998 No 184 >2b4y_A NAD-dependent deacetylase sirtuin-5; histone deacetylase, structural genomics, structural genomics consortium, SGC, hydrolase; HET: APR EPE; 1.90A {Homo sapiens} SCOP: c.31.1.5 PDB: 2nyr_A* Probab=21.94 E-value=35 Score=13.60 Aligned_cols=23 Identities=30% Similarity=0.614 Sum_probs=14.5 Q ss_pred HHCCEEEEECCCHHHHHHHHHHHHCCCEEE Q ss_conf 557799998795489999999741287299 Q gi|254780754|r 35 EEADVIVVLGGDGFMLQSFHQSKEYDKPIY 64 (264) Q Consensus 35 ~~~Dlii~iGGDGT~L~a~~~~~~~~~Pil 64 (264) ++++-|+++.|=|- .+ ..++|=+ T Consensus 17 ~~ak~ivv~TGAGi--St-----~SGIPdF 39 (271) T 2b4y_A 17 AKAKHIVIISGAGV--SA-----ESGVPTF 39 (271) T ss_dssp HHCSEEEEEECGGG--GG-----GGTC--- T ss_pred HHCCCEEEEECHHH--HH-----HHCCCCE T ss_conf 85895899957054--06-----3499984 No 185 >1sfl_A 3-dehydroquinate dehydratase; 3-dehydroquinase, enzyme turnover, shikimate pathway, lyase; 1.90A {Staphylococcus aureus subsp} SCOP: c.1.10.1 PDB: 1sfj_A* Probab=21.88 E-value=35 Score=13.59 Aligned_cols=41 Identities=7% Similarity=0.071 Sum_probs=19.0 Q ss_pred HHHHHHHHHH--CCCEEE-EECCCCC-CCCCCCCCHHHHHHHHHHCC Q ss_conf 9999999741--287299-4153433-20104458789998664201 Q gi|254780754|r 49 MLQSFHQSKE--YDKPIY-GMNCGSV-GFLMNEYCIENLVERLSVAV 91 (264) Q Consensus 49 ~L~a~~~~~~--~~~Pil-GIn~G~l-GFL~~~~~~~~~~~~l~~~~ 91 (264) +...+..... .++|++ .+.+..- |.. +.+.++..+.+..+. T Consensus 49 i~~~~~~l~~~~~~~piI~T~R~~~eGG~~--~~~~~~~~~ll~~~~ 93 (238) T 1sfl_A 49 VAEMITKLKVMQDSFKLLVTYRTKLQGGYG--QFTNDSYLNLISDLA 93 (238) T ss_dssp HHHHHHHHC---CCSEEEEECCBGGGTSCB--CCCHHHHHHHHHHGG T ss_pred HHHHHHHHHHHCCCCCEEEEECCHHHCCCC--CCCHHHHHHHHHHHH T ss_conf 999999998617998389997167779998--799899999999999 No 186 >3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae} Probab=21.42 E-value=36 Score=13.53 Aligned_cols=34 Identities=9% Similarity=0.006 Sum_probs=23.4 Q ss_pred HHCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCC Q ss_conf 55779999879548999999974128729941534 Q gi|254780754|r 35 EEADVIVVLGGDGFMLQSFHQSKEYDKPIYGMNCG 69 (264) Q Consensus 35 ~~~Dlii~iGGDGT~L~a~~~~~~~~~PilGIn~G 69 (264) +++|+|++.|.|.+.. .+.......+|+.+++.. T Consensus 61 ~~~D~Ii~~~~~a~~~-~~~~~~~~~~v~~~v~~~ 94 (295) T 3lft_A 61 NGNDLVVGIATPAAQG-LASATKDLPVIMAAITDP 94 (295) T ss_dssp SSCSEEEEESHHHHHH-HHHHCSSSCEEEESCSCT T ss_pred CCCCEEEECCCHHHHH-HHHHHHHCCCCEEEECCC T ss_conf 5888899669849999-998665246622674156 No 187 >3kwm_A Ribose-5-phosphate isomerase A; structural genomics, IDP02119, center for structural genomics of infectious diseases, csgid; 2.32A {Francisella tularensis subsp} Probab=21.38 E-value=33 Score=13.74 Aligned_cols=27 Identities=7% Similarity=0.124 Sum_probs=20.6 Q ss_pred HCCEEEEECCCHHHHHHHHHHHHCCCE Q ss_conf 577999987954899999997412872 Q gi|254780754|r 36 EADVIVVLGGDGFMLQSFHQSKEYDKP 62 (264) Q Consensus 36 ~~Dlii~iGGDGT~L~a~~~~~~~~~P 62 (264) +..++|-+|+=-|.-..++........ T Consensus 25 ~~gmvIGLGtGSTv~~~i~~L~~~~~~ 51 (224) T 3kwm_A 25 TTEITLGVGTGSTVGFLIEELVNYRDK 51 (224) T ss_dssp CSSEEEEECCSHHHHHHHHHGGGCTTT T ss_pred CCCCEEEECCHHHHHHHHHHHHHCCCC T ss_conf 899999958669999999999960667 No 188 >3lte_A Response regulator; structural genomics, PSI, protein structure initiative, nysgrc, NEW YORK structural genomix research consortium; 2.00A {Bermanella marisrubri} Probab=21.25 E-value=36 Score=13.51 Aligned_cols=58 Identities=17% Similarity=0.260 Sum_probs=25.8 Q ss_pred CCEEEEEEECCCHHHHHHHHHHHHHCCCC-----CH---------HHCCEEEEE----CCCHH-HHHHHHHHHHCCCE Q ss_conf 65059999559989999999999870788-----84---------557799998----79548-99999997412872 Q gi|254780754|r 4 NIQKIHFKASNAKKAQEAYDKFVKIYGNS-----TS---------EEADVIVVL----GGDGF-MLQSFHQSKEYDKP 62 (264) Q Consensus 4 ~~~ki~i~~~~~~~a~~~~~~l~~~~~~~-----~~---------~~~Dlii~i----GGDGT-~L~a~~~~~~~~~P 62 (264) +-+||-++.++ +...+..+...+..+-. .. ..+|+|++= +.||. +++.+|.......| T Consensus 5 ~~krILiVDDd-~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~pdlillD~~mP~~dG~el~~~ir~~~~~~~~ 81 (132) T 3lte_A 5 QSKRILVVDDD-QAMAAAIERVLKRDHWQVEIAHNGFDAGIKLSTFEPAIMTLDLSMPKLDGLDVIRSLRQNKVANQP 81 (132) T ss_dssp --CEEEEECSC-HHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHTCCSEEEEESCBTTBCHHHHHHHHHTTTCSSCC T ss_pred CCCEEEEEECC-HHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCC T ss_conf 89869999799-999999999999889999998899999999974799999996898788899999999845888989 No 189 >1m2k_A Silent information regulator 2; protein-ligand complex, gene regulation; HET: APR; 1.47A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1m2g_A* 1m2h_A* 1m2j_A* 1m2n_A* 1ici_A* Probab=21.10 E-value=36 Score=13.49 Aligned_cols=13 Identities=38% Similarity=0.675 Sum_probs=9.4 Q ss_pred HCCEEEEECCCHH Q ss_conf 5779999879548 Q gi|254780754|r 36 EADVIVVLGGDGF 48 (264) Q Consensus 36 ~~Dlii~iGGDGT 48 (264) +++-|+++.|=|- T Consensus 11 ~a~~ivvltGAGi 23 (249) T 1m2k_A 11 ESKYLVALTGAGV 23 (249) T ss_dssp TCSSEEEEECGGG T ss_pred HCCCEEEEECCHH T ss_conf 6993899978133 No 190 >3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein structure initiative, structural genomics; 2.59A {Cytophaga hutchinsonii atcc 33406} Probab=20.89 E-value=37 Score=13.46 Aligned_cols=90 Identities=9% Similarity=0.136 Sum_probs=52.9 Q ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHCCC-------C--------------CHHHCCEEEEE----CCCHH-HHHHHHHH Q ss_conf 76505999955998999999999987078-------8--------------84557799998----79548-99999997 Q gi|254780754|r 3 RNIQKIHFKASNAKKAQEAYDKFVKIYGN-------S--------------TSEEADVIVVL----GGDGF-MLQSFHQS 56 (264) Q Consensus 3 ~~~~ki~i~~~~~~~a~~~~~~l~~~~~~-------~--------------~~~~~Dlii~i----GGDGT-~L~a~~~~ 56 (264) +++++|.++. +++....+...+.+..+. . ..+.+|+|++= |.||- +++.++.. T Consensus 7 ~k~~~ILiVD-Dd~~~~~~l~~~l~~~g~~~~v~~a~~g~~Al~~l~~~~~~~~~pdliilD~~MP~~dG~el~~~ir~~ 85 (146) T 3ilh_A 7 RKIDSVLLID-DDDIVNFLNTTIIRMTHRVEEIQSVTSGNAAINKLNELYAAGRWPSIICIDINMPGINGWELIDLFKQH 85 (146) T ss_dssp CCEEEEEEEC-SCHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHTSSCCCSEEEEESSCSSSCHHHHHHHHHHH T ss_pred CCCCEEEEEE-CCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHH T ss_conf 8899799997-989999999999997799818999899999999998631027899999984898999759999999860 Q ss_pred H---HCCCEEEEECC--------------CCCCCCCCCCCHHHHHHHHHHCCCC Q ss_conf 4---12872994153--------------4332010445878999866420124 Q gi|254780754|r 57 K---EYDKPIYGMNC--------------GSVGFLMNEYCIENLVERLSVAVEC 93 (264) Q Consensus 57 ~---~~~~PilGIn~--------------G~lGFL~~~~~~~~~~~~l~~~~~~ 93 (264) . ...+|++-+.+ |--+||+-++..+.+.+.+.+.... T Consensus 86 ~~~~~~~~~viilts~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~l~~~l~~ 139 (146) T 3ilh_A 86 FQPMKNKSIVCLLSSSLDPRDQAKAEASDWVDYYVSKPLTANALNNLYNKVLNE 139 (146) T ss_dssp CGGGTTTCEEEEECSSCCHHHHHHHHHCSSCCEEECSSCCHHHHHHHHHHHHCC T ss_pred CCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC T ss_conf 851248871999978899899999999779988997989999999999999971 No 191 >2abw_A PDX2 protein, glutaminase; PLP-synthase, vitamin B6, malaria, transferase; HET: PG4; 1.62A {Plasmodium falciparum} SCOP: c.23.16.1 Probab=20.84 E-value=37 Score=13.46 Aligned_cols=65 Identities=17% Similarity=0.210 Sum_probs=33.0 Q ss_pred EEEEEEECC--CHHHHHHHHHHHHH-----C--CCCCHHHCCEEEEECCCHH------------HHHHHHHH-HHCCCEE Q ss_conf 059999559--98999999999987-----0--7888455779999879548------------99999997-4128729 Q gi|254780754|r 6 QKIHFKASN--AKKAQEAYDKFVKI-----Y--GNSTSEEADVIVVLGGDGF------------MLQSFHQS-KEYDKPI 63 (264) Q Consensus 6 ~ki~i~~~~--~~~a~~~~~~l~~~-----~--~~~~~~~~Dlii~iGGDGT------------~L~a~~~~-~~~~~Pi 63 (264) .||++++-. ..+-.+..+.+... + ..++.+++|.+|.=||--+ +..++..+ ...++|| T Consensus 4 ~kigvl~~~Gn~~~~~~al~~lg~~~~~v~~v~~~~~l~~~d~lILPG~gs~~~~~~~~~~~~~~~~~i~~~~~~~~~Pi 83 (227) T 2abw_A 4 ITIGVLSLQGDFEPHINHFIKLQIPSLNIIQVRNVHDLGLCDGLVIPGGESTTVRRCCAYENDTLYNALVHFIHVLKKPI 83 (227) T ss_dssp EEEEEECTTSCCHHHHHHHHTTCCTTEEEEEECSHHHHHTCSEEEECCSCHHHHHHHTTHHHHHHHHHHHHHHHTSCCCE T ss_pred CEEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCHHHHHCCCEEEECCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCCE T ss_conf 78999955886999999999837898479994998998279999998996599999999876677789999998539917 Q ss_pred EEECCCC Q ss_conf 9415343 Q gi|254780754|r 64 YGMNCGS 70 (264) Q Consensus 64 lGIn~G~ 70 (264) |||=.|- T Consensus 84 lGIClG~ 90 (227) T 2abw_A 84 WGTCAGC 90 (227) T ss_dssp EEETHHH T ss_pred EEECHHH T ss_conf 9850568 No 192 >3hbm_A UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter jejuni subsp} PDB: 3hbn_A* Probab=20.58 E-value=37 Score=13.42 Aligned_cols=22 Identities=14% Similarity=0.114 Sum_probs=12.5 Q ss_pred ECCEEEEECCCCHHHHHHHCCC-EE Q ss_conf 0350798226650446752298-17 Q gi|254780754|r 151 VCDGLVVSTPIGSTAYNFSALG-PI 174 (264) Q Consensus 151 ~~DGvivSTptGSTAY~lSaGG-pI 174 (264) +||.+|. +.|+|.|=+.+=| |. T Consensus 225 ~ad~vI~--~gG~T~~E~~~~g~P~ 247 (282) T 3hbm_A 225 ESNKLII--SASSLVNEALLLKANF 247 (282) T ss_dssp TEEEEEE--ESSHHHHHHHHTTCCE T ss_pred HCCEEEE--CCCHHHHHHHHHCCCE T ss_conf 6899998--8864899999959998 No 193 >1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism; HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP: e.22.1.2 PDB: 1jpu_A* 1jqa_A* Probab=20.49 E-value=37 Score=13.41 Aligned_cols=33 Identities=27% Similarity=0.364 Sum_probs=25.4 Q ss_pred HHCCEEEEECCCHHHHHHHHHHH-HCCCEEEEECC Q ss_conf 55779999879548999999974-12872994153 Q gi|254780754|r 35 EEADVIVVLGGDGFMLQSFHQSK-EYDKPIYGMNC 68 (264) Q Consensus 35 ~~~Dlii~iGGDGT~L~a~~~~~-~~~~PilGIn~ 68 (264) .++|+||.+|| |+.+-+++... ..++|++.|-+ T Consensus 85 ~~~D~IvavGG-Gs~~D~aK~~A~~~~~p~i~IPT 118 (370) T 1jq5_A 85 AEAAIVIGVGG-GKTLDTAKAVADELDAYIVIVPT 118 (370) T ss_dssp TTCSEEEEEES-HHHHHHHHHHHHHHTCEEEEEES T ss_pred CCCCEEEECCC-CCCCCHHHHHHCCCCCCEEEECC T ss_conf 48878997378-63020121221014663255236 No 194 >3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} PDB: 2zwm_A Probab=20.34 E-value=37 Score=13.39 Aligned_cols=82 Identities=20% Similarity=0.317 Sum_probs=43.1 Q ss_pred EEEEEECCCHHHHHHHHHHHHHCCC-----CC---------HHHCCEEEEE----CCCHH-HHHHHHHHHHCCCEEEEEC Q ss_conf 5999955998999999999987078-----88---------4557799998----79548-9999999741287299415 Q gi|254780754|r 7 KIHFKASNAKKAQEAYDKFVKIYGN-----ST---------SEEADVIVVL----GGDGF-MLQSFHQSKEYDKPIYGMN 67 (264) Q Consensus 7 ki~i~~~~~~~a~~~~~~l~~~~~~-----~~---------~~~~Dlii~i----GGDGT-~L~a~~~~~~~~~PilGIn 67 (264) ||-++.++..-+..+...|.. .+- .. ...+|+++.= |.||. +++..+. ..+.|++-+- T Consensus 4 rILiVDDd~~~~~~l~~~L~~-~g~~v~~a~~~~~al~~l~~~~~dlii~D~~mP~~~G~e~~~~~r~--~~~~~ii~lt 80 (120) T 3f6p_A 4 KILVVDDEKPIADILEFNLRK-EGYEVHCAHDGNEAVEMVEELQPDLILLDIMLPNKDGVEVCREVRK--KYDMPIIMLT 80 (120) T ss_dssp EEEEECSCHHHHHHHHHHHHH-TTCEEEEESSHHHHHHHHHTTCCSEEEEETTSTTTHHHHHHHHHHT--TCCSCEEEEE T ss_pred CEEEEECCHHHHHHHHHHHHH-CCCEEEEECCHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHH--CCCCCEEEEE T ss_conf 199993999999999999998-8999999899999999997189999998299999999999999981--6899589997 Q ss_pred -------------CCCCCCCCCCCCHHHHHHHHHHCC Q ss_conf -------------343320104458789998664201 Q gi|254780754|r 68 -------------CGSVGFLMNEYCIENLVERLSVAV 91 (264) Q Consensus 68 -------------~G~lGFL~~~~~~~~~~~~l~~~~ 91 (264) .|--+||.-++..+++...+.... T Consensus 81 ~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~l 117 (120) T 3f6p_A 81 AKDSEIDKVIGLEIGADDYVTKPFSTRELLARVKANL 117 (120) T ss_dssp ESSCHHHHHHHHHTTCCEEEEESCCHHHHHHHHHHHH T ss_pred CCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH T ss_conf 6799999999997599989979999999999999997 Done!