Query         gi|254780754|ref|YP_003065167.1| inorganic polyphosphate/ATP-NAD kinase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 264
No_of_seqs    129 out of 1944
Neff          6.3 
Searched_HMMs 23785
Date          Tue May 31 16:08:15 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780754.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 2an1_A Putative kinase; struct 100.0       0       0  431.8  23.3  253    1-263     1-286 (292)
  2 3pfn_A NAD kinase; structural  100.0       0       0  423.8  23.3  251    4-263    37-360 (365)
  3 2i2c_A Probable inorganic poly 100.0       0       0  416.0  25.8  245    6-263     1-262 (272)
  4 1u0t_A Inorganic polyphosphate 100.0       0       0  418.1  22.9  250    4-263     3-298 (307)
  5 1yt5_A Inorganic polyphosphate 100.0       0       0  418.0  19.5  242    6-263     1-252 (258)
  6 1z0s_A Probable inorganic poly 100.0       0       0  380.1  20.0  238    3-261    27-273 (278)
  7 2qv7_A Diacylglycerol kinase D  98.0 0.00059 2.5E-08   43.7  14.5  230    6-251    25-319 (337)
  8 2bon_A Lipid kinase; DAG kinas  97.2   0.011 4.8E-07   35.6  15.8  198   35-253    81-322 (332)
  9 1v4v_A UDP-N-acetylglucosamine  96.5   0.031 1.3E-06   32.9   9.9   73    1-73      1-128 (376)
 10 3opy_A 6-phosphofructo-1-kinas  95.4   0.077 3.2E-06   30.4   7.8   53   36-91    688-756 (989)
 11 3pfk_A Phosphofructokinase; tr  95.1   0.042 1.8E-06   32.0   5.9   40   35-75     92-141 (319)
 12 1zxx_A 6-phosphofructokinase;   95.0   0.046 1.9E-06   31.8   5.8   52   35-90     92-153 (319)
 13 2hig_A 6-phospho-1-fructokinas  95.0   0.043 1.8E-06   31.9   5.6   41   35-75    188-243 (487)
 14 1pfk_A Phosphofructokinase; tr  94.7   0.064 2.7E-06   30.9   5.8   51   35-89     93-153 (320)
 15 3hno_A Pyrophosphate-dependent  94.5   0.066 2.8E-06   30.8   5.5   41   35-75    103-158 (419)
 16 3opy_B 6-phosphofructo-1-kinas  93.5    0.13 5.6E-06   28.9   5.6   52   36-90    662-729 (941)
 17 3opy_B 6-phosphofructo-1-kinas  93.3    0.21 8.8E-06   27.6   6.3   54   35-91    275-360 (941)
 18 3opy_A 6-phosphofructo-1-kinas  93.3    0.13 5.5E-06   28.9   5.2   56   35-94    303-391 (989)
 19 2f48_A Diphosphate--fructose-6  92.8    0.26 1.1E-05   27.1   6.1   40   36-75    166-222 (555)
 20 2a9v_A GMP synthase; NP_394403  91.2    0.23 9.8E-06   27.3   4.5   69    2-70     10-95  (212)
 21 3dzc_A UDP-N-acetylglucosamine  90.2    0.92 3.9E-05   23.6   9.3   39   35-73    110-148 (396)
 22 3m3p_A Glutamine amido transfe  89.9    0.55 2.3E-05   25.0   5.4   68    3-70      1-92  (250)
 23 2v4u_A CTP synthase 2; pyrimid  89.9    0.26 1.1E-05   27.1   3.7   36   34-69     88-128 (289)
 24 1gpw_B Amidotransferase HISH;   88.3    0.63 2.6E-05   24.6   4.8   65    6-70      1-87  (201)
 25 1vgv_A UDP-N-acetylglucosamine  87.0     1.1 4.5E-05   23.1   5.3   39   35-73     85-123 (384)
 26 3ot5_A UDP-N-acetylglucosamine  86.4     1.3 5.6E-05   22.5   5.6   39   35-73    113-151 (403)
 27 2w7t_A CTP synthetase, putativ  85.8    0.59 2.5E-05   24.8   3.5   36   34-69     65-105 (273)
 28 1ka9_H Imidazole glycerol phos  84.4     1.4 5.9E-05   22.4   4.9   65    6-70      3-85  (200)
 29 2pln_A HP1043, response regula  84.1     2.1 8.7E-05   21.3   7.4   66    1-67     14-93  (137)
 30 3jte_A Response regulator rece  84.0     2.1 8.9E-05   21.3   7.2   91    3-94      1-124 (143)
 31 1oi4_A Hypothetical protein YH  83.7     1.5 6.2E-05   22.3   4.8   39   33-71     83-129 (193)
 32 3c3m_A Response regulator rece  83.3     2.3 9.5E-05   21.1   6.5   90    3-93      1-123 (138)
 33 1vco_A CTP synthetase; tetrame  82.9    0.47   2E-05   25.4   2.0   35   35-69    354-393 (550)
 34 1g2i_A Protease I; intracellul  82.3     1.7 7.3E-05   21.8   4.7   40   32-71     57-104 (166)
 35 1q7r_A Predicted amidotransfer  81.5     2.6 0.00011   20.7   6.6   66    3-70     21-104 (219)
 36 3nva_A CTP synthase; rossman f  81.5     1.1 4.4E-05   23.2   3.3   36   34-69    348-388 (535)
 37 1ta9_A Glycerol dehydrogenase;  81.1     2.1 8.8E-05   21.3   4.7   33   35-68    144-177 (450)
 38 1s1m_A CTP synthase; CTP synth  80.8     1.9 8.1E-05   21.5   4.5   38   32-69    339-381 (545)
 39 3beo_A UDP-N-acetylglucosamine  80.6     2.6 0.00011   20.8   5.0   38   36-73     95-132 (375)
 40 1o1y_A Conserved hypothetical   80.3     1.6 6.9E-05   22.0   4.0   38   33-70     54-103 (239)
 41 3h5i_A Response regulator/sens  79.7       3 0.00013   20.3   7.1   89    1-92      1-123 (140)
 42 2iss_D Glutamine amidotransfer  79.5     1.6 6.5E-05   22.1   3.6   62    6-70     21-101 (208)
 43 3kto_A Response regulator rece  77.6     3.5 0.00015   19.9   8.7   92    1-92      1-125 (136)
 44 2a9o_A Response regulator; ess  77.4     3.5 0.00015   19.9   6.7   85    5-91      1-116 (120)
 45 2gru_A 2-deoxy-scyllo-inosose   76.6     2.5 0.00011   20.8   4.0   36   32-68     90-128 (368)
 46 1jvn_A Glutamine, bifunctional  76.4     2.1 8.8E-05   21.3   3.5   66    3-70      2-89  (555)
 47 1p2f_A Response regulator; DRR  76.2     3.8 0.00016   19.7   7.4   87    5-92      2-116 (220)
 48 1rrm_A Lactaldehyde reductase;  75.8     3.3 0.00014   20.1   4.4   22   35-57     87-108 (386)
 49 3fse_A Two-domain protein cont  75.7     3.9 0.00017   19.6   5.1   39   33-71     70-116 (365)
 50 1wl8_A GMP synthase [glutamine  75.5     3.4 0.00014   20.0   4.4   64    6-70      1-82  (189)
 51 1xhf_A DYE resistance, aerobic  75.4       4 0.00017   19.5   5.0   82    7-91      5-118 (123)
 52 3efe_A THIJ/PFPI family protei  73.7     2.8 0.00012   20.5   3.6   38   34-71     72-116 (212)
 53 3nhm_A Response regulator; pro  73.3     4.5 0.00019   19.2   5.8   87    4-91      2-120 (133)
 54 2vpi_A GMP synthase; guanine m  73.3     2.1 8.6E-05   21.4   2.9   65    6-70     25-106 (218)
 55 1vlj_A NADH-dependent butanol   73.3     4.5 0.00019   19.2   5.6   63    5-68     43-151 (407)
 56 3cnb_A DNA-binding response re  72.4     4.7  0.0002   19.1   8.0   92    1-93      1-130 (143)
 57 3crn_A Response regulator rece  72.3     4.7  0.0002   19.1   7.1   87    4-92      2-120 (132)
 58 2o6l_A UDP-glucuronosyltransfe  72.2     2.2 9.2E-05   21.2   2.8   25  151-175    86-110 (170)
 59 1kq3_A Glycerol dehydrogenase;  71.8     4.9  0.0002   19.0   4.9   33   35-68     93-126 (376)
 60 2vrn_A Protease I, DR1199; cys  71.8     4.9  0.0002   19.0   4.8   39   33-71     72-119 (190)
 61 1qdl_B Protein (anthranilate s  71.5       5 0.00021   18.9   5.6   65    5-70      1-87  (195)
 62 3jzd_A Iron-containing alcohol  71.2     3.2 0.00014   20.1   3.5   33   35-68     88-121 (358)
 63 3iv7_A Alcohol dehydrogenase I  71.0     3.1 0.00013   20.2   3.3   33   35-68     87-120 (364)
 64 3ia7_A CALG4; glycosysltransfe  70.2     5.3 0.00022   18.8   4.5   33   35-69    101-133 (402)
 65 3cg0_A Response regulator rece  70.1     5.3 0.00022   18.8   8.2   87    3-92      7-127 (140)
 66 3cne_A Putative protease I; st  69.1     5.6 0.00023   18.6   5.1   37   34-70     64-114 (175)
 67 1ydh_A AT5G11950; structural g  68.8     5.3 0.00022   18.8   4.1   63    2-69      6-74  (216)
 68 3okf_A 3-dehydroquinate syntha  68.7     4.8  0.0002   19.1   3.9   36   32-68    119-157 (390)
 69 3a10_A Response regulator; pho  67.9     5.9 0.00025   18.5   7.1   84    5-90      1-114 (116)
 70 1sg6_A Pentafunctional AROM po  66.5     6.3 0.00026   18.3   4.7   34   34-68    103-139 (393)
 71 1s3l_A Hypothetical protein MJ  66.0     6.4 0.00027   18.2   4.9   59    3-70     23-84  (190)
 72 1o2d_A Alcohol dehydrogenase,   65.1     5.7 0.00024   18.5   3.7   32   36-68     98-148 (371)
 73 3mgk_A Intracellular protease/  65.0     4.6 0.00019   19.2   3.2   38   33-70     62-107 (211)
 74 2ab0_A YAJL; DJ-1/THIJ superfa  64.7     6.4 0.00027   18.3   3.9   36   35-70     65-109 (205)
 75 3hbf_A Flavonoid 3-O-glucosylt  64.6     3.9 0.00017   19.6   2.8   28   36-66    117-144 (454)
 76 3ce9_A Glycerol dehydrogenase;  64.5     6.9 0.00029   18.0   7.2   64    4-68     33-120 (354)
 77 2jzc_A UDP-N-acetylglucosamine  63.7     2.6 0.00011   20.7   1.8   28  151-178   132-160 (224)
 78 2nv0_A Glutamine amidotransfer  63.4     7.2  0.0003   17.9   5.9   66    5-70      1-82  (196)
 79 1gpm_A GMP synthetase, XMP ami  63.4       2 8.2E-05   21.5   1.1   70    1-70      1-89  (525)
 80 2fex_A Conserved hypothetical   63.4     7.2  0.0003   17.9   4.1   39   33-71     60-105 (188)
 81 1xah_A Sadhqs, 3-dehydroquinat  62.7     7.4 0.00031   17.8   4.6   46   18-64     72-120 (354)
 82 1qo0_D AMIR; binding protein,   62.4     7.5 0.00031   17.8   7.8   85    7-92     14-124 (196)
 83 2iya_A OLEI, oleandomycin glyc  62.2     7.6 0.00032   17.8   4.9   32   35-69    108-139 (424)
 84 3b2n_A Uncharacterized protein  61.4     7.8 0.00033   17.7   9.4   90    3-94      1-124 (133)
 85 2c1x_A UDP-glucose flavonoid 3  61.4     4.9  0.0002   19.0   2.8   30   36-68    112-141 (456)
 86 2qr3_A Two-component system re  61.1     7.9 0.00033   17.7   6.5   88    4-93      2-126 (140)
 87 2qv0_A Protein MRKE; structura  60.9       8 0.00033   17.6   6.0   90    1-92      5-126 (143)
 88 3hdv_A Response regulator; PSI  60.7       8 0.00034   17.6   7.3   84    7-91      9-125 (136)
 89 1vhq_A Enhancing lycopene bios  59.9     8.3 0.00035   17.5   5.0   38   33-70     87-143 (232)
 90 2pju_A Propionate catabolism o  59.9     8.3 0.00035   17.5   5.9   44   35-93     62-105 (225)
 91 3noq_A THIJ/PFPI family protei  59.5     8.4 0.00035   17.5   4.0   38   33-70     62-107 (231)
 92 1fy2_A Aspartyl dipeptidase; s  59.0     8.6 0.00036   17.4   4.9   37   35-71     78-124 (229)
 93 2acv_A Triterpene UDP-glucosyl  58.8     5.4 0.00023   18.7   2.7   20   36-55    114-133 (463)
 94 2pl1_A Transcriptional regulat  56.9     9.3 0.00039   17.2   7.1   84    6-91      1-116 (121)
 95 2q5c_A NTRC family transcripti  56.8     9.3 0.00039   17.2   6.2   76    1-93      1-93  (196)
 96 3cz5_A Two-component response   56.8     9.4 0.00039   17.2   6.3   92    1-94      1-126 (153)
 97 1zh2_A KDP operon transcriptio  55.8     9.7 0.00041   17.1   6.5   84    5-91      1-116 (121)
 98 3kht_A Response regulator; PSI  54.9      10 0.00042   17.0   5.2   93    1-94      1-129 (144)
 99 3f5d_A Protein YDEA; unknow pr  53.6      10 0.00043   16.9   3.4   69    3-71      1-104 (206)
100 3eqz_A Response regulator; str  53.2      11 0.00045   16.8   6.7   87    3-91      1-123 (135)
101 3e3x_A BIPA; MCSG,PSI2, struct  53.2      11 0.00045   16.8   4.0   51  131-184   193-248 (332)
102 1z2w_A Vacuolar protein sortin  53.0     6.2 0.00026   18.3   2.2   64    2-70      7-72  (192)
103 2iyf_A OLED, oleandomycin glyc  52.8      11 0.00046   16.8   5.1   34   35-71    103-136 (430)
104 1ujn_A Dehydroquinate synthase  52.6      11 0.00046   16.8   4.0   35   33-68     81-118 (348)
105 3c65_A Uvrabc system protein C  52.3     9.3 0.00039   17.2   3.0   65    5-69     47-118 (226)
106 3iaa_A CALG2; glycosyltransfer  52.2      11 0.00047   16.7   4.7   24  152-175   314-337 (416)
107 2kkn_A Uncharacterized protein  52.1     6.9 0.00029   18.0   2.3   61    3-70     20-82  (178)
108 3gt7_A Sensor protein; structu  52.0      11 0.00047   16.7   6.2   91    1-92      3-126 (154)
109 3cfy_A Putative LUXO repressor  51.1      12 0.00048   16.6   6.1   90    1-92      1-121 (137)
110 2nrr_A Uvrabc system protein C  50.1      12  0.0005   16.5   6.2   64    5-70     50-115 (159)
111 1uf3_A Hypothetical protein TT  50.1      12  0.0005   16.5   7.5   61    1-70      1-72  (228)
112 3hdg_A Uncharacterized protein  50.0      12  0.0005   16.5   6.5   88    1-90      3-122 (137)
113 1t35_A Hypothetical protein YV  50.0      11 0.00047   16.7   3.1   60    5-69      1-66  (191)
114 2rk3_A Protein DJ-1; parkinson  49.6      12 0.00051   16.5   4.0   36   36-71     66-110 (197)
115 2ywd_A Glutamine amidotransfer  49.2      12 0.00052   16.4   4.0   39   32-70     35-84  (191)
116 1i1q_B Anthranilate synthase c  49.1     7.6 0.00032   17.8   2.1   34   36-70     47-86  (192)
117 1eiw_A Hypothetical protein MT  49.0     8.5 0.00036   17.5   2.4   40   29-68     31-75  (111)
118 3fij_A LIN1909 protein; 11172J  48.9      12 0.00052   16.4   3.7   36   35-70     60-118 (254)
119 3gl9_A Response regulator; bet  47.8      13 0.00055   16.3   7.7   84    7-91      4-120 (122)
120 1a9x_B Carbamoyl phosphate syn  47.1      12 0.00049   16.6   2.8   14  150-163   230-243 (379)
121 3clh_A 3-dehydroquinate syntha  46.7      14 0.00057   16.2   4.2   51   17-68     66-119 (343)
122 2r25_B Osmosensing histidine p  46.6      14 0.00057   16.2   8.8   84    7-91      4-125 (133)
123 1u9c_A APC35852; structural ge  46.5      14 0.00057   16.2   4.7   44   32-75     85-137 (224)
124 3cg4_A Response regulator rece  44.9      14  0.0006   16.0   6.3   91    1-92      3-126 (142)
125 2p6p_A Glycosyl transferase; G  44.7      14 0.00061   16.0   5.3   31   35-68    106-136 (384)
126 3gra_A Transcriptional regulat  44.3      15 0.00062   16.0   4.4   38   33-70     68-111 (202)
127 3hl0_A Maleylacetate reductase  44.0      15 0.00062   15.9   3.5   33   35-68     86-119 (353)
128 2zay_A Response regulator rece  43.8      15 0.00063   15.9   5.5   90    4-93      7-128 (147)
129 3klo_A Transcriptional regulat  42.7      16 0.00065   15.8   9.6   92    3-94      5-130 (225)
130 3n7t_A Macrophage binding prot  41.3      16 0.00069   15.7   5.6   46   30-75     99-153 (247)
131 1f0k_A MURG, UDP-N-acetylgluco  41.3      16 0.00069   15.7   3.6   32   36-68     96-127 (364)
132 2ywj_A Glutamine amidotransfer  41.2      16 0.00069   15.7   3.9   39   32-70     33-78  (186)
133 2qvg_A Two component response   39.0      18 0.00074   15.4   7.3   87    1-88      1-130 (143)
134 3ewn_A THIJ/PFPI family protei  39.0      18 0.00075   15.4   3.7   36   35-70     83-127 (253)
135 1rrv_A Glycosyltransferase GTF  38.8      18 0.00075   15.4   3.5   29   36-64     94-122 (416)
136 2qip_A Protein of unknown func  37.9      18 0.00077   15.3   4.3   33   35-67    107-140 (165)
137 2a4x_A Mitomycin-binding prote  37.5      19 0.00079   15.3   3.5   95    1-98      1-100 (138)
138 1iir_A Glycosyltransferase GTF  36.8      19  0.0008   15.2   3.5   32   35-66     92-123 (415)
139 3ca8_A Protein YDCF; two domai  36.8      19 0.00081   15.2   4.1   43   31-75     31-75  (266)
140 2f62_A Nucleoside 2-deoxyribos  36.6      19 0.00081   15.2   6.5   34   35-69     66-107 (161)
141 3lua_A Response regulator rece  36.5      19 0.00082   15.2   7.7   89    4-92      2-126 (140)
142 3eod_A Protein HNR; response r  36.2      20 0.00082   15.2   5.9   65    1-67      1-86  (130)
143 1e0t_A Pyruvate kinase, PK; ph  35.4      20 0.00085   15.1   3.0   52  148-203   367-423 (470)
144 2a33_A Hypothetical protein; s  35.1      20 0.00086   15.1   3.7   63    3-69     11-78  (215)
145 3ot1_A 4-methyl-5(B-hydroxyeth  34.7      21 0.00087   15.0   4.6   39   33-71     68-115 (208)
146 1dc7_A NTRC, nitrogen regulati  34.4      13 0.00056   16.2   1.5   85    7-92      5-120 (124)
147 2gkg_A Response regulator homo  34.4      21 0.00088   15.0   8.7   87    4-91      3-123 (127)
148 2rjn_A Response regulator rece  34.4      21 0.00088   15.0   8.4   91    1-93      1-126 (154)
149 3l3b_A ES1 family protein; ssg  34.2      21 0.00089   15.0   4.8   39   29-67    100-158 (242)
150 1su1_A Hypothetical protein YF  33.9      21  0.0009   14.9   4.9   39    3-45     23-61  (208)
151 3h4t_A Glycosyltransferase GTF  33.7      21  0.0009   14.9   5.1   35   35-69     91-125 (404)
152 3khd_A Pyruvate kinase; malari  33.2      22 0.00092   14.9   3.2   36  148-187   415-450 (520)
153 1i3c_A Response regulator RCP1  32.6      22 0.00094   14.8   5.1   88    6-94      9-138 (149)
154 1p6q_A CHEY2; chemotaxis, sign  32.4      23 0.00095   14.8   8.4   85    6-91      7-125 (129)
155 1j5p_A Aspartate dehydrogenase  32.3      23 0.00095   14.8   4.8   40   34-76     58-97  (253)
156 1ys7_A Transcriptional regulat  31.2      24 0.00099   14.7   6.9   90    1-91      1-123 (233)
157 3o1n_A 3-dehydroquinate dehydr  30.1      23 0.00096   14.7   2.1   10  152-161   190-199 (276)
158 2vxo_A GMP synthase [glutamine  30.0      25   0.001   14.5   2.9   66    5-70     29-111 (697)
159 1kgs_A DRRD, DNA binding respo  29.8      25   0.001   14.5   7.8   84    6-90      3-117 (225)
160 1weh_A Conserved hypothetical   29.5      25  0.0011   14.5   3.1   61    5-69      1-65  (171)
161 3bbn_B Ribosomal protein S2; s  28.9      26  0.0011   14.4   4.2   30   36-66    157-186 (231)
162 1dbw_A Transcriptional regulat  28.8      26  0.0011   14.4   9.0   86    6-93      4-121 (126)
163 2kdd_A Borealin; protein dimer  28.7      14 0.00058   16.1   0.8   24  164-187     6-29  (76)
164 1jbe_A Chemotaxis protein CHEY  28.4      26  0.0011   14.4   8.8   88    2-91      2-123 (128)
165 2qxy_A Response regulator; reg  28.3      26  0.0011   14.3   7.4   85    7-93      6-121 (142)
166 2ywb_A GMP synthase [glutamine  27.7      12 0.00049   16.6   0.3   63    8-70      2-81  (503)
167 1mb3_A Cell division response   27.7      27  0.0011   14.3   7.0   86    6-92      2-120 (124)
168 2gwr_A DNA-binding response re  27.5      27  0.0011   14.3   7.4   91    1-92      1-121 (238)
169 3er6_A Putative transcriptiona  26.8      28  0.0012   14.2   3.7   36   35-70     73-118 (209)
170 1qkk_A DCTD, C4-dicarboxylate   26.3      29  0.0012   14.1   8.9   85    7-93      5-121 (155)
171 3ehd_A Uncharacterized conserv  25.9      29  0.0012   14.1   4.4   34   35-69     68-106 (162)
172 2yr1_A 3-dehydroquinate dehydr  25.6      30  0.0012   14.0   3.0   15  150-164   168-182 (257)
173 1thg_A Lipase; hydrolase(carbo  25.3      30  0.0013   14.0   3.3   38   38-75    124-173 (544)
174 3l4e_A Uncharacterized peptida  25.2      30  0.0013   14.0   4.3   13  152-164   112-124 (206)
175 3bfj_A 1,3-propanediol oxidore  24.9      30  0.0013   14.0   3.5   21   36-57     92-112 (387)
176 1llf_A Lipase 3; candida cylin  24.1      32  0.0013   13.9   2.3   38   38-75    116-165 (534)
177 2qsj_A DNA-binding response re  23.9      32  0.0013   13.8   8.6   90    4-95      2-126 (154)
178 2z0m_A 337AA long hypothetical  23.1      22 0.00091   14.9   0.9   21  152-172   220-240 (337)
179 1f8y_A Nucleoside 2-deoxyribos  23.0      33  0.0014   13.7   4.0   34   35-69     77-115 (157)
180 1dz3_A Stage 0 sporulation pro  22.6      34  0.0014   13.7   5.7   85    6-91      3-121 (130)
181 1rw7_A YDR533CP; alpha-beta sa  22.4      34  0.0014   13.7   4.9   45   30-74     92-145 (243)
182 2nrt_A Uvrabc system protein C  22.3      34  0.0014   13.6   7.3   62    6-69     56-119 (220)
183 1k66_A Phytochrome response re  22.1      35  0.0015   13.6   2.2   59   36-94     62-139 (149)
184 2b4y_A NAD-dependent deacetyla  21.9      35  0.0015   13.6   2.9   23   35-64     17-39  (271)
185 1sfl_A 3-dehydroquinate dehydr  21.9      35  0.0015   13.6   3.0   41   49-91     49-93  (238)
186 3lft_A Uncharacterized protein  21.4      36  0.0015   13.5   3.7   34   35-69     61-94  (295)
187 3kwm_A Ribose-5-phosphate isom  21.4      33  0.0014   13.7   1.6   27   36-62     25-51  (224)
188 3lte_A Response regulator; str  21.3      36  0.0015   13.5   8.1   58    4-62      5-81  (132)
189 1m2k_A Silent information regu  21.1      36  0.0015   13.5   3.4   13   36-48     11-23  (249)
190 3ilh_A Two component response   20.9      37  0.0015   13.5  10.6   90    3-93      7-139 (146)
191 2abw_A PDX2 protein, glutamina  20.8      37  0.0015   13.5   3.7   65    6-70      4-90  (227)
192 3hbm_A UDP-sugar hydrolase; PS  20.6      37  0.0016   13.4   3.5   22  151-174   225-247 (282)
193 1jq5_A Glycerol dehydrogenase;  20.5      37  0.0016   13.4   3.3   33   35-68     85-118 (370)
194 3f6p_A Transcriptional regulat  20.3      37  0.0016   13.4   8.0   82    7-91      4-117 (120)

No 1  
>2an1_A Putative kinase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, transferase; 2.00A {Salmonella typhimurium LT2}
Probab=100.00  E-value=0  Score=431.84  Aligned_cols=253  Identities=23%  Similarity=0.358  Sum_probs=214.3

Q ss_pred             CCCCCEEEEEEECC-CHHHHHHHHHHHHHCCCC--------------------------CHHHCCEEEEECCCHHHHHHH
Q ss_conf             98765059999559-989999999999870788--------------------------845577999987954899999
Q gi|254780754|r    1 MDRNIQKIHFKASN-AKKAQEAYDKFVKIYGNS--------------------------TSEEADVIVVLGGDGFMLQSF   53 (264)
Q Consensus         1 m~~~~~ki~i~~~~-~~~a~~~~~~l~~~~~~~--------------------------~~~~~Dlii~iGGDGT~L~a~   53 (264)
                      |.+.+|+|+++++. .+.+.++++++.+++.+.                          ..+++|++|++|||||||+|+
T Consensus         1 M~~~~k~Igiv~~~~~~~~~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~Dlvi~iGGDGT~L~a~   80 (292)
T 2an1_A            1 MNNHFKCIGIVGHPRHPTALTTHEMLYRWLCDQGYEVIVEQQIAHELQLKNVPTGTLAEIGQQADLAVVVGGDGNMLGAA   80 (292)
T ss_dssp             ---CCCEEEEECC-------CHHHHHHHHHHHTTCEEEEEHHHHHHTTCSSCCEECHHHHHHHCSEEEECSCHHHHHHHH
T ss_pred             CCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEECHHHHHHCCCCCCCCCCHHHCCCCCCEEEEECCCHHHHHHH
T ss_conf             99779589999539998999999999999997889999968888664877777554445055777899992685799999


Q ss_pred             HHHHHCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEEEEEC---CCCCCCEEEEEEEEEEEEECCCCCC
Q ss_conf             9974128729941534332010445878999866420124320344345421---2444420157753479972687642
Q gi|254780754|r   54 HQSKEYDKPIYGMNCGSVGFLMNEYCIENLVERLSVAVECTFHPLKMTVFDY---DNSICAENILAINEVSIIRKPGQNQ  130 (264)
Q Consensus        54 ~~~~~~~~PilGIn~G~lGFL~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~AlNEi~i~r~~~~~~  130 (264)
                      |.+.+.++||+|||+|++|||+ +++++++.+.+.++..+.+..+++..+..   ......+.++||||++|.|+...  
T Consensus        81 ~~~~~~~~PilGIn~G~lGFL~-~~~~~~~~~~l~~~~~g~~~~~~r~~l~~~~~~~~~~~~~~~AlNdvvi~~~~~~--  157 (292)
T 2an1_A           81 RTLARYDINVIGINRGNLGFLT-DLDPDNALQQLSDVLEGRYISEKRFLLEAQVCQQDRQKRISTAINEVVLHPGKVA--  157 (292)
T ss_dssp             HHHTTSSCEEEEBCSSSCCSSC-CBCTTSHHHHHHHHHTTCEEEEEEEEEEEEEECC----CEEEESSEEEEEESSTT--
T ss_pred             HHHCCCCCCEEEEECCCCEEEE-ECCCHHHHHHHHHHHHCCCEEEEEEEEEEEEEECCCCHHHHHHHEEEEECCCCCC--
T ss_conf             9837689838987658842477-3361138999999873673132344567776411110000212015540268853--


Q ss_pred             EEEEEEEEEEECCEEEEEEEECCEEEEECCCCHHHHHHHCCCEEEEECCCEEEEECCCCCCHHHHHHCCCCCCCEEEEEE
Q ss_conf             36788898766787653121035079822665044675229817740886058630354330111100278841489997
Q gi|254780754|r  131 LVQAAKLEVKVDDQVRLPELVCDGLVVSTPIGSTAYNFSALGPILPLESRHLLLTPVSPFKPRRWHGAILPNDVMIEIQV  210 (264)
Q Consensus       131 ~~~~~~~~v~id~~~~~~~~~~DGvivSTptGSTAY~lSaGGpIv~p~~~~~~itpI~p~~l~~~rplVl~~~~~I~i~i  210 (264)
                        +++++++++||++ +.+|+|||+||||||||||||+||||||++|+++++++||||||+++. ||+|+|++++|++++
T Consensus       158 --~~~~~~v~id~~~-~~~~~gDGlIvSTptGSTAY~lSaGGpIv~p~~~~~~itpI~p~~l~~-rplV~~~~~~i~i~~  233 (292)
T 2an1_A          158 --HMIEFEVYIDETF-AFSQRSDGLIISTPTGSTAYSLSAGGPILTPSLDAITLVPMFPHTLSA-RPLVINSSSTIRLRF  233 (292)
T ss_dssp             --CCEEEEEEETTEE-EEEEEESEEEEECTGGGGTHHHHTTCCEECTTCSEEEEEEESCSSTTC-CCEEEETTCCEEEEE
T ss_pred             --EEEEEEEEECCCC-CEEECCCCEEECCCCCHHHHHHHCCCCCCCCCHHEEEEEECCCCCCCC-CCCCCCCCEEEEEEE
T ss_conf             --3799999845621-447745889998667657999768997427312004531225766667-970249963999997


Q ss_pred             CCCCCCEEEEEECCE---ECCCCCEEEEEECCCCCEEEEECCCCCHHHHHHHHHCC
Q ss_conf             487887589998898---81487789999879951899964888899988887517
Q gi|254780754|r  211 LEHKQRPVIATADRL---AIEPVSRINVTQSSDITMRILSDSHRSWSDRILTAQFS  263 (264)
Q Consensus       211 ~~~~~~~~~~~~D~~---~~~~~~~i~I~~s~~~~~~li~~~~~~f~~ril~~kF~  263 (264)
                      .. ..+++.++.||+   ++.+++.|+|++|+ ..++++++++++||++ |++||.
T Consensus       234 ~~-~~~~~~l~~DG~~~~~l~~gd~I~I~~s~-~~~~lv~~~~~~f~~~-L~~KL~  286 (292)
T 2an1_A          234 SH-RRSDLEISCDSQIALPIQEGEDVLIRRCD-YHLNLIHPKDYSYFNT-LSTKLG  286 (292)
T ss_dssp             CC----CEEEEETTSCCEEECTTCEEEEEEEE-EEEEEEEETTCCHHHH-HHHHHT
T ss_pred             CC-CCCCEEEEEECCCCEEECCCCEEEEEECC-CEEEEEECCCCCHHHH-HHHHCC
T ss_conf             48-99878999938800870899799999899-8799998299999999-987778


No 2  
>3pfn_A NAD kinase; structural genomics consortium, SNP, SGC, transferase; 2.70A {Homo sapiens}
Probab=100.00  E-value=0  Score=423.76  Aligned_cols=251  Identities=21%  Similarity=0.331  Sum_probs=205.2

Q ss_pred             CCEEEEEEECC-CHHHHHHHHHHHHHCCC--------------------------------------CCHHHCCEEEEEC
Q ss_conf             65059999559-98999999999987078--------------------------------------8845577999987
Q gi|254780754|r    4 NIQKIHFKASN-AKKAQEAYDKFVKIYGN--------------------------------------STSEEADVIVVLG   44 (264)
Q Consensus         4 ~~~ki~i~~~~-~~~a~~~~~~l~~~~~~--------------------------------------~~~~~~Dlii~iG   44 (264)
                      .-+++.++.+. .+++.+...++.+++.+                                      +..+++|+||+||
T Consensus        37 ~pk~vlii~K~~d~~~~~~~~el~~~L~~~g~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlvI~lG  116 (365)
T 3pfn_A           37 SPKSVLVIKKMRDASLLQPFKELCTHLMEENMIVYVEKKVLEDPAIASDESFGAVKKKFCTFREDYDDISNQIDFIICLG  116 (365)
T ss_dssp             CCCEEEEEECTTCGGGHHHHHHHHHHHHHTSCEEEEEHHHHHSHHHHHCSTTHHHHHHCEEECTTTCCCTTTCSEEEEES
T ss_pred             CCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEECCHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCEEEEEC
T ss_conf             99889999579997999999999999987899899861353071543345555334443315579567575668899976


Q ss_pred             CCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEEEEECC------------------
Q ss_conf             95489999999741287299415343320104458789998664201243203443454212------------------
Q gi|254780754|r   45 GDGFMLQSFHQSKEYDKPIYGMNCGSVGFLMNEYCIENLVERLSVAVECTFHPLKMTVFDYD------------------  106 (264)
Q Consensus        45 GDGT~L~a~~~~~~~~~PilGIn~G~lGFL~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~------------------  106 (264)
                      ||||||+|+|.+.+..+||||||+|+||||+ +++.+++.+.|.++..+.+..+++..+...                  
T Consensus       117 GDGTlL~a~~~~~~~~~PilGIN~G~LGFLt-~~~~~~~~~~l~~i~~g~~~i~~R~~L~~~v~~~~~~~~~~v~~~~~~  195 (365)
T 3pfn_A          117 GDGTLLYASSLFQGSVPPVMAFHLGSLGFLT-PFSFENFQSQVTQVIEGNAAVVLRSRLKVRVVKELRGKKTAVHNGLGE  195 (365)
T ss_dssp             STTHHHHHHHHCSSSCCCEEEEESSSCTTTC-CEESTTHHHHHHHHHHSCCBEEEECCEEEEEEC---------------
T ss_pred             CCHHHHHHHHHHCCCCCCEEEEECCCCCCCC-CCCHHHHHHHHHHHHCCCCEEEEECCEEEEEEECCCCCCCCCCCCCCC
T ss_conf             8199999999851789828998379875276-575576999999998299769986045899985156653100234322


Q ss_pred             -----------CCCCCEEEEEEEEEEEEECCCCCCEEEEEEEEEEECCEEEEEEEECCEEEEECCCCHHHHHHHCCCEEE
Q ss_conf             -----------444420157753479972687642367888987667876531210350798226650446752298177
Q gi|254780754|r  107 -----------NSICAENILAINEVSIIRKPGQNQLVQAAKLEVKVDDQVRLPELVCDGLVVSTPIGSTAYNFSALGPIL  175 (264)
Q Consensus       107 -----------~~~~~~~~~AlNEi~i~r~~~~~~~~~~~~~~v~id~~~~~~~~~~DGvivSTptGSTAY~lSaGGpIv  175 (264)
                                 .......++||||++|.|+...    +++++++++||++ +++++||||||||||||||||+||||||+
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~ALNEvvI~r~~~~----~~~~~~v~idg~~-~~~~~aDGlIVSTPTGSTAYslSAGGPIv  270 (365)
T 3pfn_A          196 KGSQAAGLDMDVGKQAMQYQVLNEVVIDRGPSS----YLSNVDVYLDGHL-ITTVQGDGVIVSTPTGSTAYAAAAGASMI  270 (365)
T ss_dssp             --------------CEEEEEESSEEEEECTTCS----SCCCEEEEETTEE-EEEECSSEEEEECGGGGGTHHHHTTCCEE
T ss_pred             CCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCC----CEEEEEEEECCEE-EEEEECCCEEEECCCCCHHHHHHCCCCCC
T ss_conf             233322333456763530215547999538975----3478999888988-89982398699799961676875269853


Q ss_pred             EECCCEEEEECCCCCCHHHHHHCCCCCCCEEEEEECCCCCCEEEEEECCE---ECCCCCEEEEEECCCCCEEEEECCC--
Q ss_conf             40886058630354330111100278841489997487887589998898---8148778999987995189996488--
Q gi|254780754|r  176 PLESRHLLLTPVSPFKPRRWHGAILPNDVMIEIQVLEHKQRPVIATADRL---AIEPVSRINVTQSSDITMRILSDSH--  250 (264)
Q Consensus       176 ~p~~~~~~itpI~p~~l~~~rplVl~~~~~I~i~i~~~~~~~~~~~~D~~---~~~~~~~i~I~~s~~~~~~li~~~~--  250 (264)
                      +|++++|++||||||+++. ||+|+|++++|+|++....+..+.++.||+   +++++++|+|++|+ .++++++..+  
T Consensus       271 ~P~~~~i~ltPI~PhsLs~-RPiVlp~~~~I~I~v~~~~~~~~~v~~DG~~~~~l~~gd~I~I~~S~-~~~~~i~~~~~~  348 (365)
T 3pfn_A          271 HPNVPAIMITPICPHSLSF-RPIVVPAGVELKIMLSPEARNTAWVSFDGRKRQEIRHGDSISITTSC-YPLPSICVRDPV  348 (365)
T ss_dssp             CTTSCCEEEEEESCSSTTC-CCEEECTTCCEEEEECTTCSSCEEEEETTEEEEEECTTCEEEEEECS-SCEEEECSSCHH
T ss_pred             CCCCCCEEEEECCCCCCCC-CCEEECCCCEEEEEECCCCCCCEEEEECCCCCEEECCCCEEEEEECC-CCEEEEEECCCC
T ss_conf             7662637860016663568-98885899879999844899878999869965784899899999889-836899978999


Q ss_pred             CCHHHHHHHHHCC
Q ss_conf             8899988887517
Q gi|254780754|r  251 RSWSDRILTAQFS  263 (264)
Q Consensus       251 ~~f~~ril~~kF~  263 (264)
                      ++||++ |++|..
T Consensus       349 ~dff~~-Lr~kL~  360 (365)
T 3pfn_A          349 SDWFES-LAQCLH  360 (365)
T ss_dssp             HHHHHH-HHHHTT
T ss_pred             CCHHHH-HHHHCC
T ss_conf             888999-998543


No 3  
>2i2c_A Probable inorganic polyphosphate/ATP-NAD kinase 1; NADP bound of lmnadk1, transferase; HET: DTA PG4; 1.85A {Listeria monocytogenes egd-e} PDB: 2i1w_A* 2i2a_A* 2i2b_A* 2i29_A* 2i2d_A* 2i2e_A* 2i2f_A* 2q5f_A*
Probab=100.00  E-value=0  Score=415.97  Aligned_cols=245  Identities=20%  Similarity=0.340  Sum_probs=208.9

Q ss_pred             EEEEEEECCCHHHHHHHHHHHHHCCCC----CHHHCCEEEEECCCHHHHHHHHHHHHC--CCEEEEECCCCCCCCCCCCC
Q ss_conf             059999559989999999999870788----845577999987954899999997412--87299415343320104458
Q gi|254780754|r    6 QKIHFKASNAKKAQEAYDKFVKIYGNS----TSEEADVIVVLGGDGFMLQSFHQSKEY--DKPIYGMNCGSVGFLMNEYC   79 (264)
Q Consensus         6 ~ki~i~~~~~~~a~~~~~~l~~~~~~~----~~~~~Dlii~iGGDGT~L~a~~~~~~~--~~PilGIn~G~lGFL~~~~~   79 (264)
                      ||+.|+++..++|+++.+.+.+.+.+.    +.+++|++|++|||||||+|+|.+...  ++||+|||+|+||||+ +++
T Consensus         1 mk~~i~~~~~~~s~~i~~~i~~~l~~~~~~~d~~~~Dlvi~iGGDGT~L~a~~~~~~~~~~~PvlGin~G~lGFL~-~~~   79 (272)
T 2i2c_A            1 MKYMITSKGDEKSDLLRLNMIAGFGEYDMEYDDVEPEIVISIGGDGTFLSAFHQYEERLDEIAFIGIHTGHLGFYA-DWR   79 (272)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHTTSSCEECSSSCSEEEEEESHHHHHHHHHHTGGGTTTCEEEEEESSSCCSSC-CBC
T ss_pred             CEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCC-CCC
T ss_conf             9799990899899999999999987669722688999999989709999999987631799829998259997486-788


Q ss_pred             HHHHHHHHHHCCCCCCCEEEEEEEECC----CCCCCEEEEEEEEEEEEECCCCCCEEEEEEEEEEECCEEEEEEEECCEE
Q ss_conf             789998664201243203443454212----4444201577534799726876423678889876678765312103507
Q gi|254780754|r   80 IENLVERLSVAVECTFHPLKMTVFDYD----NSICAENILAINEVSIIRKPGQNQLVQAAKLEVKVDDQVRLPELVCDGL  155 (264)
Q Consensus        80 ~~~~~~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~~~AlNEi~i~r~~~~~~~~~~~~~~v~id~~~~~~~~~~DGv  155 (264)
                      ++++.+.++++..+++..+++..+...    .+.....++||||++|.+..+.      ..+++++||++ +++|+||||
T Consensus        80 ~~~~~~~l~~i~~g~~~i~~r~~L~~~v~~~~g~~~~~~~AlNev~i~~~~~~------~~~~v~i~~~~-~~~~~~DGl  152 (272)
T 2i2c_A           80 PAEADKLVKLLAKGEYQKVSYPLLKTTVKYGIGKKEATYLALNESTVKSSGGP------FVVDVVINDIH-FERFRGDGL  152 (272)
T ss_dssp             GGGHHHHHHHHHTTCCEEEEEEEEEEEEEESSSCCEEEEEESSEEEEEESSSC------EEEEEEETTEE-EEEEEESEE
T ss_pred             HHHHHHHHHHHHHHHCCCEEHHHHHEEEHHCCCCEEEEHHHCCCEEEECCCCE------EEEEEEECCEE-EEEEEEEEE
T ss_conf             88999999999863122000013220112026750430011163344047640------77899988889-999984289


Q ss_pred             EEECCCCHHHHHHHCCCEEEEECCCEEEEECCCC-----CCHHHHHHCCCCCCCEEEEEECCCCCCEEEEEECCEE--CC
Q ss_conf             9822665044675229817740886058630354-----3301111002788414899974878875899988988--14
Q gi|254780754|r  156 VVSTPIGSTAYNFSALGPILPLESRHLLLTPVSP-----FKPRRWHGAILPNDVMIEIQVLEHKQRPVIATADRLA--IE  228 (264)
Q Consensus       156 ivSTptGSTAY~lSaGGpIv~p~~~~~~itpI~p-----~~l~~~rplVl~~~~~I~i~i~~~~~~~~~~~~D~~~--~~  228 (264)
                      ||||||||||||+||||||++|+++++++|||||     |++.. ||+|+|++++|++++...  +++.++.||++  ..
T Consensus       153 IVSTptGSTAY~~SaGGpIi~p~~~~~~ltpI~p~~~~~~~~~~-rplVl~~~~~I~i~~~~~--~~~~i~~DG~~~~~~  229 (272)
T 2i2c_A          153 CMSTPSGTTAYNKSLGGALMHPSIEAMQLTEMASINNRVYRTIG-SPLVFPKHHVVSLQPVND--KDFQISVDHLSILHR  229 (272)
T ss_dssp             EEECTGGGGTHHHHTTCCCCCTTSCEEEEEEESCCCSSSCCCCC-SCEEEETTCCEEEEESSC--CCEEEEETTEEEEEC
T ss_pred             EECCCCCHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCCCCC-CCEEECCCCEEEEEECCC--CCEEEEEECCEEEEC
T ss_conf             99988526999975899702898870699864467753331568-969989998899998899--957999958899968


Q ss_pred             CCCEEEEEECCCCCEEEEECCCCCHHHHHHHHHCC
Q ss_conf             87789999879951899964888899988887517
Q gi|254780754|r  229 PVSRINVTQSSDITMRILSDSHRSWSDRILTAQFS  263 (264)
Q Consensus       229 ~~~~i~I~~s~~~~~~li~~~~~~f~~ril~~kF~  263 (264)
                      ++++|+|+.++ .++++++.++++||+|+ ++||=
T Consensus       230 ~~~~i~I~~s~-~~~~l~r~~~~~f~~~l-~~k~l  262 (272)
T 2i2c_A          230 DVQEIRYEVSA-KKIHFARFRSFPFWRRV-HDSFI  262 (272)
T ss_dssp             SEEEEEEEEEE-EEEEEEECSCCCHHHHH-HHHHT
T ss_pred             CCCEEEEEECC-CEEEEEEECCCCHHHHH-HHHHH
T ss_conf             99899999899-78999997999979999-99703


No 4  
>1u0t_A Inorganic polyphosphate/ATP-NAD kinase; alpha-beta, beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Mycobacterium tuberculosis} SCOP: e.52.1.1 PDB: 1u0r_A 1y3i_A* 1y3h_A
Probab=100.00  E-value=0  Score=418.15  Aligned_cols=250  Identities=25%  Similarity=0.404  Sum_probs=208.9

Q ss_pred             CCEEEEEEECCC-HHHHHHHHHHHHHCCCC---------------------------------------CHHHCCEEEEE
Q ss_conf             650599995599-89999999999870788---------------------------------------84557799998
Q gi|254780754|r    4 NIQKIHFKASNA-KKAQEAYDKFVKIYGNS---------------------------------------TSEEADVIVVL   43 (264)
Q Consensus         4 ~~~ki~i~~~~~-~~a~~~~~~l~~~~~~~---------------------------------------~~~~~Dlii~i   43 (264)
                      ..+|+.++.+.. +++.+.++++.+++.+.                                       ..+++|++|++
T Consensus         3 ~~r~v~lv~~~~k~~a~~~a~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dlvivl   82 (307)
T 1u0t_A            3 AHRSVLLVVHTGRDEATETARRVEKVLGDNKIALRVLSAEAVDRGSLHLAPDDMRAMGVEIEVVDADQHAADGCELVLVL   82 (307)
T ss_dssp             --CEEEEEESSSGGGGSHHHHHHHHHHHTTTCEEEEEC-----------------------------------CCCEEEE
T ss_pred             CCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHHHCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCEEEEE
T ss_conf             88899999809998999999999999997899899984313314654467411220375321024653444564589997


Q ss_pred             CCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEEEEE---CCCCCCCEEEEEEEEE
Q ss_conf             7954899999997412872994153433201044587899986642012432034434542---1244442015775347
Q gi|254780754|r   44 GGDGFMLQSFHQSKEYDKPIYGMNCGSVGFLMNEYCIENLVERLSVAVECTFHPLKMTVFD---YDNSICAENILAINEV  120 (264)
Q Consensus        44 GGDGT~L~a~~~~~~~~~PilGIn~G~lGFL~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~AlNEi  120 (264)
                      |||||||+|+|.+.+.++||||||+|++|||+ +++++++.+.+.++..+.+..+++..+.   .+++......+||||+
T Consensus        83 GGDGT~L~aa~~~~~~~~PilGIN~G~lGFL~-~~~~~~~~~~l~~~~~g~~~~~~r~~l~~~~~~~~~~~~~~~alNdv  161 (307)
T 1u0t_A           83 GGDGTFLRAAELARNASIPVLGVNLGRIGFLA-EAEAEAIDAVLEHVVAQDYRVEDRLTLDVVVRQGGRIVNRGWALNEV  161 (307)
T ss_dssp             ECHHHHHHHHHHHHHHTCCEEEEECSSCCSSC-SEEGGGHHHHHHHHHHTCCEEEEECCEEEEEEETTEEEEEEEESSEE
T ss_pred             CCCHHHHHHHHHHCCCCCEEEEECCCCCCEEE-CCCHHHHHHHHHHHHHCCCEEEEEEEEEEEECCCCEEEEECCCCCEE
T ss_conf             68778999999746469839997589721730-36505589999998717836987655789981698055301012236


Q ss_pred             EEEECCCCCCEEEEEEEEEEECCEEEEEEEECCEEEEECCCCHHHHHHHCCCEEEEECCCEEEEECCCCCCHHHHHHCCC
Q ss_conf             99726876423678889876678765312103507982266504467522981774088605863035433011110027
Q gi|254780754|r  121 SIIRKPGQNQLVQAAKLEVKVDDQVRLPELVCDGLVVSTPIGSTAYNFSALGPILPLESRHLLLTPVSPFKPRRWHGAIL  200 (264)
Q Consensus       121 ~i~r~~~~~~~~~~~~~~v~id~~~~~~~~~~DGvivSTptGSTAY~lSaGGpIv~p~~~~~~itpI~p~~l~~~rplVl  200 (264)
                      +|.|+...    +++.+++++||++ +++|+||||||||||||||||+||||||++|+++++++||||||++.. ||+|+
T Consensus       162 vi~r~~~~----~~~~~~v~i~g~~-~~~~~~DGlIvsTpTGSTAYslSaGGPIv~p~~~~i~vtpi~ph~l~~-rplVl  235 (307)
T 1u0t_A          162 SLEKGPRL----GVLGVVVEIDGRP-VSAFGCDGVLVSTPTGSTAYAFSAGGPVLWPDLEAILVVPNNAHALFG-RPMVT  235 (307)
T ss_dssp             EEECSSSS----SCEEEEEESSSSE-EEEEEESEEEEECTGGGGTHHHHTTCCEECTTCCCEEEEEESCSSSCC-CCEEE
T ss_pred             EEEECCCC----CEEEEEEEECCEE-EEEEECCEEEECCCCCCCHHHHHCCCCCCCCCCCEEEEEECCCCCCCC-CCEEE
T ss_conf             88615766----3579999989999-999960579982745443237767999668322304430046546789-98798


Q ss_pred             CCCCEEEEEECCCCCCEEEEEECCE---ECCCCCEEEEEECCCCCEEEEECCCCCHHHHHHHHHCC
Q ss_conf             8841489997487887589998898---81487789999879951899964888899988887517
Q gi|254780754|r  201 PNDVMIEIQVLEHKQRPVIATADRL---AIEPVSRINVTQSSDITMRILSDSHRSWSDRILTAQFS  263 (264)
Q Consensus       201 ~~~~~I~i~i~~~~~~~~~~~~D~~---~~~~~~~i~I~~s~~~~~~li~~~~~~f~~ril~~kF~  263 (264)
                      |++++|+|++.... +++.++.||+   ++.++++|.|++++ .++++++..+++||++ |++||.
T Consensus       236 ~~~~~i~i~v~~~~-~~~~v~~DG~~~~~l~~gd~I~I~~s~-~~~~li~~~~~~f~~~-l~~Kl~  298 (307)
T 1u0t_A          236 SPEATIAIEIEADG-HDALVFCDGRREMLIPAGSRLEVTRCV-TSVKWARLDSAPFTDR-LVRKFR  298 (307)
T ss_dssp             CTTCCEEEEECTTS-CCEEEEETTTEEEEECTTCEEEEEECS-SCEEEEECSCCCHHHH-HHHHHT
T ss_pred             CCCCEEEEEEECCC-CCEEEEEECCCCEEECCCCEEEEEECC-CEEEEEEECCCCHHHH-HHHHCC
T ss_conf             89977999991499-878999989925772899699999889-8899999599898999-999759


No 5  
>1yt5_A Inorganic polyphosphate/ATP-NAD kinase; domain 1: alpha/beta domain2: beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima}
Probab=100.00  E-value=0  Score=418.04  Aligned_cols=242  Identities=26%  Similarity=0.409  Sum_probs=203.8

Q ss_pred             EEEEEEECCCH-HHHH-HHHHHHHHCCC--------CCHHHCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCCCC
Q ss_conf             05999955998-9999-99999987078--------88455779999879548999999974128729941534332010
Q gi|254780754|r    6 QKIHFKASNAK-KAQE-AYDKFVKIYGN--------STSEEADVIVVLGGDGFMLQSFHQSKEYDKPIYGMNCGSVGFLM   75 (264)
Q Consensus         6 ~ki~i~~~~~~-~a~~-~~~~l~~~~~~--------~~~~~~Dlii~iGGDGT~L~a~~~~~~~~~PilGIn~G~lGFL~   75 (264)
                      ||+++++++.. ++.+ +.+.+.+.+..        ....++|++|++|||||||+|+|.+.+ ++||||||+|+||||+
T Consensus         1 Mki~iv~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Dlvi~iGGDGT~L~a~~~~~~-~~PilgIn~G~lGFL~   79 (258)
T 1yt5_A            1 MKIAILYREEREKEGEFLKEKISKEHEVIEFGEANAPGRVTADLIVVVGGDGTVLKAAKKAAD-GTPMVGFKAGRLGFLT   79 (258)
T ss_dssp             CEEEEEECGGGHHHHHHHHHHHTTTSEEEEEEESSSCSCBCCSEEEEEECHHHHHHHHTTBCT-TCEEEEEESSSCCSSC
T ss_pred             CEEEEEECCCCHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCEEEEECCCHHHHHHHHHHCC-CCCEEEECCCCCCEEE
T ss_conf             989999779727889999999876504312313565667887899998882999999998278-9978987169853032


Q ss_pred             CCCCHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCEEEEEEEEEEEEECCCCCCEEEEEEEEEEECCEEEEEEEECCEE
Q ss_conf             44587899986642012432034434542124444201577534799726876423678889876678765312103507
Q gi|254780754|r   76 NEYCIENLVERLSVAVECTFHPLKMTVFDYDNSICAENILAINEVSIIRKPGQNQLVQAAKLEVKVDDQVRLPELVCDGL  155 (264)
Q Consensus        76 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~AlNEi~i~r~~~~~~~~~~~~~~v~id~~~~~~~~~~DGv  155 (264)
                       +++++++.+.++++..+.+..+++.......  .....+||||++|.|....    +++++++++||++ +++|+|||+
T Consensus        80 -~~~~~~~~~~l~~i~~g~~~~~~~~~~~~~~--~~~~~~AlNev~i~~~~~~----~~~~~~v~id~~~-~~~~~gDGl  151 (258)
T 1yt5_A           80 -SYTLDEIDRFLEDLRNWNFREETRWFIQIES--ELGNHLALNDVTLERDLSG----KMVEIEVEVEHHS-SMWFFADGV  151 (258)
T ss_dssp             -CBCGGGHHHHHHHHHTTCCEEEEEEEEEEEE--TTEEEEESSEEEEECCTTS----CCEEEEEEETTSC-CEEEEESEE
T ss_pred             -CCCHHHHHHHHHHHHHCCCCCEEEEEEEECC--CEEEEEECCCCEEECCCCC----CEEEEEEEECCEE-EEEEEEEEE
T ss_conf             -1564566777788774242020012331023--1111245277189458865----4268999988779-998774799


Q ss_pred             EEECCCCHHHHHHHCCCEEEEECCCEEEEECCCCCCHHHHHHCCCCCCCEEEEEECCCCCCEEEEEECCEECCCCCEEEE
Q ss_conf             98226650446752298177408860586303543301111002788414899974878875899988988148778999
Q gi|254780754|r  156 VVSTPIGSTAYNFSALGPILPLESRHLLLTPVSPFKPRRWHGAILPNDVMIEIQVLEHKQRPVIATADRLAIEPVSRINV  235 (264)
Q Consensus       156 ivSTptGSTAY~lSaGGpIv~p~~~~~~itpI~p~~l~~~rplVl~~~~~I~i~i~~~~~~~~~~~~D~~~~~~~~~i~I  235 (264)
                      ||||||||||||+||||||++|++++|++||||||+++. ||+|+|++++|+++.    ++++.++.||++..++++|+|
T Consensus       152 ivsTptGSTAY~lSaGGpIv~p~~~~~~ltpI~p~~l~~-rplV~~~~~~i~i~~----~~~~~~~~DG~~~~~~~~i~I  226 (258)
T 1yt5_A          152 VISTPTGSTAYSLSIGGPIIFPECEVLEISPIAPQFFLT-RSVVIPSNFKVVVES----QRDINMLVDGVLTGKTKRIEV  226 (258)
T ss_dssp             EEECTGGGGTTTTTTTCCCCCTTCCEEEEEEESCSTTCC-CCEEEETTSCEEEEE----EEEEEEEETTEEEEEEEEEEE
T ss_pred             EECCCCCHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCC-CCCCCCCCCEEEECC----CCCEEEEEEEEECCCCCEEEE
T ss_conf             980647645787507999648986727998615542457-996068975899846----998699995268489969999


Q ss_pred             EECCCCCEEEEECCCCCHHHHHHHHHCC
Q ss_conf             9879951899964888899988887517
Q gi|254780754|r  236 TQSSDITMRILSDSHRSWSDRILTAQFS  263 (264)
Q Consensus       236 ~~s~~~~~~li~~~~~~f~~ril~~kF~  263 (264)
                      ++|+ .+++++++++++||++ +++|+.
T Consensus       227 ~~s~-~~~~li~~~~~~f~~~-lr~KL~  252 (258)
T 1yt5_A          227 KKSR-RYVRILRPPEYDYVTV-IRDKLG  252 (258)
T ss_dssp             EEEE-EEEEEEECTTCCHHHH-HHHHHC
T ss_pred             EECC-CEEEEEEECCCCHHHH-HHHHCC
T ss_conf             9899-8899999499998899-875568


No 6  
>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A*
Probab=100.00  E-value=0  Score=380.09  Aligned_cols=238  Identities=25%  Similarity=0.425  Sum_probs=190.6

Q ss_pred             CCCEEEEEEECCCHHHHHHHHHHHHHC------C--CCCHHHCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCCC
Q ss_conf             765059999559989999999999870------7--88845577999987954899999997412872994153433201
Q gi|254780754|r    3 RNIQKIHFKASNAKKAQEAYDKFVKIY------G--NSTSEEADVIVVLGGDGFMLQSFHQSKEYDKPIYGMNCGSVGFL   74 (264)
Q Consensus         3 ~~~~ki~i~~~~~~~a~~~~~~l~~~~------~--~~~~~~~Dlii~iGGDGT~L~a~~~~~~~~~PilGIn~G~lGFL   74 (264)
                      .+.||..+++.+...++++.+.+.+.-      +  .+..+++|+||++|||||||+|+|.+. ..+||+|||+|++|||
T Consensus        27 ~~~~r~~~v~~~~~~~kri~~~lk~~~~~~~~~~~~~~~~e~~DlVI~iGGDGTlL~a~~~~~-~~~PilGIN~G~lGFL  105 (278)
T 1z0s_A           27 GGGMRAAVVYKTDGHVKRIEEALKRLEVEVELFNQPSEELENFDFIVSVGGDGTILRILQKLK-RCPPIFGINTGRVGLL  105 (278)
T ss_dssp             ---CEEEEEESSSTTHHHHHHHHHHTTCEEEEESSCCGGGGGSSEEEEEECHHHHHHHHTTCS-SCCCEEEEECSSSCTT
T ss_pred             CCEEEEEEEECCCHHHHHHHHHHHHCCCEEEECCCCHHHCCCCCEEEEECCCHHHHHHHHHHC-CCCCEEEECCCCCCCC
T ss_conf             101589999847648999999987427558984798112127999999878699999999827-9986999848997317


Q ss_pred             CCCCCHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCEEEEEEEEEEEEECCCCCCEEEEEEEEEEECCEEEEEEEECCE
Q ss_conf             04458789998664201243203443454212444420157753479972687642367888987667876531210350
Q gi|254780754|r   75 MNEYCIENLVERLSVAVECTFHPLKMTVFDYDNSICAENILAINEVSIIRKPGQNQLVQAAKLEVKVDDQVRLPELVCDG  154 (264)
Q Consensus        75 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~AlNEi~i~r~~~~~~~~~~~~~~v~id~~~~~~~~~~DG  154 (264)
                      ++ ++++++.+.|+++.. .+..+++..+..   ...+..+||||++|.|..+.    +++++++++|++. +++++|||
T Consensus       106 ~~-~~~~~~~~~l~~~~~-~~~~~~~~~l~~---~~~~~~~ALNEv~I~~~~~~----~~~~~~i~id~~~-~~~~~gDG  175 (278)
T 1z0s_A          106 TH-ASPENFEVELKKAVE-KFEVERFPRVSC---SAMPDVLALNEIAVLSRKPA----KMIDVALRVDGVE-VDRIRCDG  175 (278)
T ss_dssp             CC-BBTTBCHHHHHHHHH-HCCEEEECCEEE---TTEEEEEESSEEEEEESSTT----CCEEEEEEETTEE-EEEEEESE
T ss_pred             CC-CCHHHHHHHHHHHHH-HHHHHEEEEECC---CCCCCCCCCCCCEEEECCCC----EEEEEEEEECCEE-EEEEECCE
T ss_conf             27-887789999999886-310320220002---33221001363079851773----2899999879998-57787888


Q ss_pred             EEEECCCCHHHHHHHCCCEEEEECCCEEEEECCCCCCHHHHHHCCCCCCCEEEEEECCCCCCEEEEEECCEE-CCCCCEE
Q ss_conf             798226650446752298177408860586303543301111002788414899974878875899988988-1487789
Q gi|254780754|r  155 LVVSTPIGSTAYNFSALGPILPLESRHLLLTPVSPFKPRRWHGAILPNDVMIEIQVLEHKQRPVIATADRLA-IEPVSRI  233 (264)
Q Consensus       155 vivSTptGSTAY~lSaGGpIv~p~~~~~~itpI~p~~l~~~rplVl~~~~~I~i~i~~~~~~~~~~~~D~~~-~~~~~~i  233 (264)
                      |||||||||||||+||||||++|++++|++||||||+++ |||+|+|++++|+++..     .+.++.||++ +..+++|
T Consensus       176 vIVSTptGSTAY~lSaGGpIv~p~~~~i~itPIaP~~l~-~rplVl~~~~~I~i~~~-----~~~v~~DG~~~i~~~~~I  249 (278)
T 1z0s_A          176 FIVATQIGSTGYAFSAGGPVVEPYLECFILIPIAPFRFG-WKPYVVSMERKIEVIAE-----KAIVVADGQKSVDFDGEI  249 (278)
T ss_dssp             EEEEESGGGGTHHHHTTCCEECTTSCCEEEEEESCCSSB-CCCEEECTTSCEEEEEE-----EEEEEETTTEEEEEEEEE
T ss_pred             EEEECCCCCHHHHHHCCCCEECCCCCCEEEEECCCCCCC-CCCEEECCCCEEEEEEC-----CEEEEECCCEEECCCCEE
T ss_conf             999278751888853899646688873587523666668-98879789988999907-----529997797123599989


Q ss_pred             EEEECCCCCEEEEECCCCCHHHHHHHHH
Q ss_conf             9998799518999648888999888875
Q gi|254780754|r  234 NVTQSSDITMRILSDSHRSWSDRILTAQ  261 (264)
Q Consensus       234 ~I~~s~~~~~~li~~~~~~f~~ril~~k  261 (264)
                      .|++|+ .++++++.  .+|++. +.+|
T Consensus       250 ~I~~s~-~~~~~~~~--~~~f~~-l~~K  273 (278)
T 1z0s_A          250 TIEKSE-FPAVFFKN--EKRFRN-LFGK  273 (278)
T ss_dssp             EEEECS-CCEEEECC--TTHHHH-HHHH
T ss_pred             EEEECC-CCEEEECC--CHHHHH-HHHH
T ss_conf             999899-72699356--658999-9997


No 7  
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP complex, transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=97.96  E-value=0.00059  Score=43.73  Aligned_cols=230  Identities=12%  Similarity=0.084  Sum_probs=99.2

Q ss_pred             EEEEEEECCCH---HHHHHHHHHHHHCCC----------------------CCHHHCCEEEEECCCHHHHHHHHHHHHC-
Q ss_conf             05999955998---999999999987078----------------------8845577999987954899999997412-
Q gi|254780754|r    6 QKIHFKASNAK---KAQEAYDKFVKIYGN----------------------STSEEADVIVVLGGDGFMLQSFHQSKEY-   59 (264)
Q Consensus         6 ~ki~i~~~~~~---~a~~~~~~l~~~~~~----------------------~~~~~~Dlii~iGGDGT~L~a~~~~~~~-   59 (264)
                      +|+.++.|+.-   ++++..+++.+.+..                      ...+++|+||++|||||+=.++..+... 
T Consensus        25 kr~~vI~NP~SG~g~~~~~~~~i~~~l~~~g~~~~i~~T~~~g~a~~~a~~~~~~~~d~IVv~GGDGTv~ev~~gl~~~~  104 (337)
T 2qv7_A           25 KRARIIYNPTSGKEQFKRELPDALIKLEKAGYETSAYATEKIGDATLEAERAMHENYDVLIAAGGDGTLNEVVNGIAEKP  104 (337)
T ss_dssp             EEEEEEECTTSTTSCHHHHHHHHHHHHHHTTEEEEEEECCSTTHHHHHHHHHTTTTCSEEEEEECHHHHHHHHHHHTTCS
T ss_pred             CEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHC
T ss_conf             35999999888987579999999999998799699998289226999999987779999999906569999999998616


Q ss_pred             -CCEEEEECCCCCCCCCCCCC-HHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCE-EEEE-EEEEEEE------------
Q ss_conf             -87299415343320104458-789998664201243203443454212444420-1577-5347997------------
Q gi|254780754|r   60 -DKPIYGMNCGSVGFLMNEYC-IENLVERLSVAVECTFHPLKMTVFDYDNSICAE-NILA-INEVSII------------  123 (264)
Q Consensus        60 -~~PilGIn~G~lGFL~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~A-lNEi~i~------------  123 (264)
                       .+|+.=|-+|+-.=++..+. +.++.+++.....+.....  .+...++..... -.+. .-+++..            
T Consensus       105 ~~~plgiiP~GTgN~~Ar~lgi~~~~~~a~~~i~~g~~~~i--d~~~v~~~~fl~~~~~G~~a~~~~~~~~~~~~~~g~l  182 (337)
T 2qv7_A          105 NRPKLGVIPMGTVNDFGRALHIPNDIMGALDVIIEGHSTKV--DIGKMNNRYFINLAAGGQLTQVSYETPSKLKSIVGPF  182 (337)
T ss_dssp             SCCEEEEEECSSCCHHHHHTTCCSSHHHHHHHHHHTCEEEE--EEEEETTEEESSEEEEECBCC-------------CGG
T ss_pred             CCCEEEEECCCCCCCEEEECCCCCCHHHHHHHHHCCCCEEE--EEEEECCEEEEEEEEEHHHHHHHHHHHHHHHCCCCCH
T ss_conf             79618995499998131604678766888887743870898--7878888999999987023587888887633036627


Q ss_pred             ----ECCCCCCEEEEEEEEEEECCEEEEEEEECCEEEEECCCCHHHHHHHCCCEEEEEC-------CCEEEEECCCCCCH
Q ss_conf             ----2687642367888987667876531210350798226650446752298177408-------86058630354330
Q gi|254780754|r  124 ----RKPGQNQLVQAAKLEVKVDDQVRLPELVCDGLVVSTPIGSTAYNFSALGPILPLE-------SRHLLLTPVSPFKP  192 (264)
Q Consensus       124 ----r~~~~~~~~~~~~~~v~id~~~~~~~~~~DGvivSTptGSTAY~lSaGGpIv~p~-------~~~~~itpI~p~~l  192 (264)
                          ..-......+..++.+.+|++. ++. .+--++|+.  ++.    -+||.-+.|.       ++++++.+.....+
T Consensus       183 ~Y~~~~~~~l~~~~~~~~~v~~dg~~-~~~-~~~~~~v~n--~~~----~ggg~~~~P~a~~~DG~ldv~~~~~~~~~~l  254 (337)
T 2qv7_A          183 AYYIKGFEMLPQMKAVDLRIEYDGNV-FQG-EALLFFLGL--TNS----MAGFEKLVPDAKLDDGYFTLIIVEKSNLAEL  254 (337)
T ss_dssp             GSCCCTTTTGGGBCCEEEEEEETTEE-EEE-EEEEEEEES--SCC----CSSCSCSSTTCCSSSSCEEEEEEECCCHHHH
T ss_pred             HHHHHHHHHHHHCCCCCEEEEECCEE-EEE-EEEEEEEEC--CCC----CCCCCCCCCCCCCCCCCEEEEEECCCCHHHH
T ss_conf             89999999975047864599989977-897-766312541--652----4778735876566788328999658999999


Q ss_pred             HH-----HHH-------CCCCCCCEEEEEECCCCCCEEEEEECCEECCCCCEEEEEECCCCCEEEEECCCC
Q ss_conf             11-----110-------027884148999748788758999889881487789999879951899964888
Q gi|254780754|r  193 RR-----WHG-------AILPNDVMIEIQVLEHKQRPVIATADRLAIEPVSRINVTQSSDITMRILSDSHR  251 (264)
Q Consensus       193 ~~-----~rp-------lVl~~~~~I~i~i~~~~~~~~~~~~D~~~~~~~~~i~I~~s~~~~~~li~~~~~  251 (264)
                      ..     ++.       +..-.-.+++|+  .  ..+..+..||..+.. ..++|+.-++ .++++-+++.
T Consensus       255 ~~~~~~~~~G~~~~~~~v~~~~~~~i~I~--~--~~~~~~~iDGE~~~~-~p~~i~v~p~-al~v~~P~~~  319 (337)
T 2qv7_A          255 GHIMTLASRGEHTKHPKVIYEKAKAINIS--S--FTDLQLNVDGEYGGK-LPANFLNLER-HIDVFAPNDI  319 (337)
T ss_dssp             HHHHHHHTTTCGGGSTTEEEEEESEEEEE--C--SSCCEEEETTEEEEE-SCEEEEEEEE-EEEEECCTTS
T ss_pred             HHHHHHHHCCCCCCCCCEEEEEECEEEEE--E--CCCCEEEECCCCCCC-CCEEEEEECC-EEEEECCCCC
T ss_conf             99999986699778998899991789999--6--999979924898999-6669999989-6799888987


No 8  
>2bon_A Lipid kinase; DAG kinase, ATP-binding, transferase; 1.9A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Probab=97.24  E-value=0.011  Score=35.61  Aligned_cols=198  Identities=14%  Similarity=0.138  Sum_probs=91.0

Q ss_pred             HHCCEEEEECCCHHHHHHHHHHHHC---CCEEEEE-CCCCCCCCCCCCC-HHHHHHHHHHCCCCCCCEEEEEEEECCCCC
Q ss_conf             5577999987954899999997412---8729941-5343320104458-789998664201243203443454212444
Q gi|254780754|r   35 EEADVIVVLGGDGFMLQSFHQSKEY---DKPIYGM-NCGSVGFLMNEYC-IENLVERLSVAVECTFHPLKMTVFDYDNSI  109 (264)
Q Consensus        35 ~~~Dlii~iGGDGT~L~a~~~~~~~---~~PilGI-n~G~lGFL~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  109 (264)
                      +.+|.||+.|||||+=.++.-....   +.|.+|| -+|+-.-++-.+. +.+..++++.+..+...+.  .+...++. 
T Consensus        81 ~g~d~IV~~GGDGTv~evv~gL~~~~~~~~p~lgiiP~GT~NdfAr~lgip~d~~~a~~~i~~g~~~~i--Dvg~vn~~-  157 (332)
T 2bon_A           81 FGVATVIAGGGDGTINEVSTALIQCEGDDIPALGILPLGTANDFATSVGIPEALDKALKLAIAGDAIAI--DMAQVNKQ-  157 (332)
T ss_dssp             HTCSEEEEEESHHHHHHHHHHHHHCCSSCCCEEEEEECSSSCHHHHHTTCCSSHHHHHHHHHHSEEEEE--EEEEETTS-
T ss_pred             CCCCEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHCCCCCCHHHHHHHHHCCCEEEE--EEEEEECC-
T ss_conf             798999999883699999999986377788659997898740316853999997999999853975998--44576311-


Q ss_pred             CCEEEEEEEEEEE-------EEC-----CC------------CCCEEEEEEEEEEECCEEEEEEEECCEEEEECCCCHHH
Q ss_conf             4201577534799-------726-----87------------64236788898766787653121035079822665044
Q gi|254780754|r  110 CAENILAINEVSI-------IRK-----PG------------QNQLVQAAKLEVKVDDQVRLPELVCDGLVVSTPIGSTA  165 (264)
Q Consensus       110 ~~~~~~AlNEi~i-------~r~-----~~------------~~~~~~~~~~~v~id~~~~~~~~~~DGvivSTptGSTA  165 (264)
                          .+.+|-+.+       .+.     ..            .....+..++++.+|+.. +   .++.++++-..++. 
T Consensus       158 ----~~f~n~a~~G~~a~v~~~~~~~~k~~~G~~~y~~~~l~~l~~~~~~~~~i~~d~~~-~---~~~~~~v~v~N~~~-  228 (332)
T 2bon_A          158 ----TCFINMATGGFGTRITTETPEKLKAALGSVSYIIHGLMRMDTLQPDRCEIRGENFH-W---QGDALVIGIGNGRQ-  228 (332)
T ss_dssp             ----CEESSEEEEEEEEEC----------CCHHHHHHHHHTSCEEEEECEEEEEEETTEE-E---EEEESEEEEESSSC-
T ss_pred             ----CEEEEEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCEEEEEECCEE-E---EEEEEEEEEECCCC-
T ss_conf             ----00788850126899999998875203562367788999874057723899943448-9---72057999946666-


Q ss_pred             HHHHCCCEEEEEC-------CCEEEEECCCCCCH--HHHH-----HCCC-CCCCEEEEEECCCCCCEEEEEECCEECCCC
Q ss_conf             6752298177408-------86058630354330--1111-----0027-884148999748788758999889881487
Q gi|254780754|r  166 YNFSALGPILPLE-------SRHLLLTPVSPFKP--RRWH-----GAIL-PNDVMIEIQVLEHKQRPVIATADRLAIEPV  230 (264)
Q Consensus       166 Y~lSaGGpIv~p~-------~~~~~itpI~p~~l--~~~r-----plVl-~~~~~I~i~i~~~~~~~~~~~~D~~~~~~~  230 (264)
                         ..||..+.|+       ++++++.+..-...  ..++     |-|. -....++|+.    .++..+..||..+. .
T Consensus       229 ---~ggg~~i~P~a~~~DG~Ldv~i~~~~~~l~~l~~~l~~~~~~~~v~~~~~~~l~I~~----~~~~~~~iDGE~~~-~  300 (332)
T 2bon_A          229 ---AGGGQQLCPNALINDGLLQLRIFTGDEILPALVSTLKSDEDNPNIIEGASSWFDIQA----PHDITFNLDGEPLS-G  300 (332)
T ss_dssp             ---BTTTBCSCTTCCTTSSCEEEEEECCSSCCHHHHHHHHTTCCCTTEEEEEESEEEEEE----EEEEEEEETTEEEE-E
T ss_pred             ---CCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHCCCCCCCCEEEEEEEEEEEEE----CCCCEEEECCCCCC-C
T ss_conf             ---678877688887889828999988676999999986366899988999968999996----89897995689789-9


Q ss_pred             CEEEEEECCCCCEEEEECCCCCH
Q ss_conf             78999987995189996488889
Q gi|254780754|r  231 SRINVTQSSDITMRILSDSHRSW  253 (264)
Q Consensus       231 ~~i~I~~s~~~~~~li~~~~~~f  253 (264)
                      ..++++.-++ .++++-+++..+
T Consensus       301 ~p~~i~v~p~-aL~vlvP~~~~~  322 (332)
T 2bon_A          301 QNFHIEILPA-ALRCRLPPDCPL  322 (332)
T ss_dssp             EEEEEEEEEE-EEEEEECTTCTT
T ss_pred             CCEEEEEECC-EEEEECCCCCCC
T ss_conf             7569999999-999986899843


No 9  
>1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} SCOP: c.87.1.3
Probab=96.48  E-value=0.031  Score=32.88  Aligned_cols=73  Identities=15%  Similarity=0.149  Sum_probs=52.6

Q ss_pred             CCCCCEEEEEEECCCHHHHH---HHHHHHHH--C---------------------CCC------------C---------
Q ss_conf             98765059999559989999---99999987--0---------------------788------------8---------
Q gi|254780754|r    1 MDRNIQKIHFKASNAKKAQE---AYDKFVKI--Y---------------------GNS------------T---------   33 (264)
Q Consensus         1 m~~~~~ki~i~~~~~~~a~~---~~~~l~~~--~---------------------~~~------------~---------   33 (264)
                      |+.+||||.++.-..++..+   +.+.+.+.  +                     +-.            .         
T Consensus         1 ~~~~MkkI~~v~GtR~e~~k~~pl~~~l~~~~~~~~~li~tG~H~~~~~~~~~~~gi~~d~~~~~~~~~~~~~~~~~~~~   80 (376)
T 1v4v_A            1 MEGGMKRVVLAFGTRPEATKMAPVYLALRGIPGLKPLVLLTGQHREQLRQALSLFGIQEDRNLDVMQERQALPDLAARIL   80 (376)
T ss_dssp             ---CCEEEEEEECSHHHHHHHHHHHHHHHTSTTEEEEEEECSSCHHHHHHHHHTTTCCCSEECCCCSSCCCHHHHHHHHH
T ss_pred             CCCCCCEEEEEEEHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHCCCHHCCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf             99999889999970184999999999997289998899982688566747113409976656788888888999999999


Q ss_pred             --------HHHCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCC
Q ss_conf             --------4557799998795489999999741287299415343320
Q gi|254780754|r   34 --------SEEADVIVVLGGDGFMLQSFHQSKEYDKPIYGMNCGSVGF   73 (264)
Q Consensus        34 --------~~~~Dlii~iGGDGT~L~a~~~~~~~~~PilGIn~G~lGF   73 (264)
                              -.+||+|+++|...+.|-++-.+...++|+.-|..|-+.+
T Consensus        81 ~~~~~il~~~kpD~Vlv~GDr~~~la~a~aa~~~~ipi~HiegG~rsg  128 (376)
T 1v4v_A           81 PQAARALKEMGADYVLVHGDTLTTFAVAWAAFLEGIPVGHVEAGLRSG  128 (376)
T ss_dssp             HHHHHHHHHTTCSEEEEESSCHHHHHHHHHHHHTTCCEEEETCCCCCS
T ss_pred             HHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf             999999740599989996897079999999986297479866176666


No 10 
>3opy_A 6-phosphofructo-1-kinase alpha-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Probab=95.36  E-value=0.077  Score=30.37  Aligned_cols=53  Identities=17%  Similarity=0.368  Sum_probs=35.5

Q ss_pred             HCCEEEEECCCHHHHHHHHHHHH------CCCEEEEECC-------C---CCCCCCCCCCHHHHHHHHHHCC
Q ss_conf             57799998795489999999741------2872994153-------4---3320104458789998664201
Q gi|254780754|r   36 EADVIVVLGGDGFMLQSFHQSKE------YDKPIYGMNC-------G---SVGFLMNEYCIENLVERLSVAV   91 (264)
Q Consensus        36 ~~Dlii~iGGDGT~L~a~~~~~~------~~~PilGIn~-------G---~lGFL~~~~~~~~~~~~l~~~~   91 (264)
                      +.|.+|+|||||++-.+......      ..+|++||=.       |   ++||-+   ....+.+.++++.
T Consensus       688 ~Id~LivIGG~gS~~~a~~L~~~~~~y~~~~IpvVgIPkTIDNDv~gTD~SiGfdT---Aln~i~~~id~Ir  756 (989)
T 3opy_A          688 KFDGLIIIGGFEAFTALYELDAARAQYPIFNIPMCCLPATVSNNVPGTEYSLGSDT---CLNTLSGYCDAVK  756 (989)
T ss_dssp             TCSEEEEEESHHHHHHHHHHHHHTTTCGGGCSCEEEEEBCSSCCCTTCSCCBTHHH---HHHHHHHHHHHHH
T ss_pred             CCCEEEEECCHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCHHH---HHHHHHHHHHHHH
T ss_conf             98989997886899999999985533347898779824674468987757765777---9999999999998


No 11 
>3pfk_A Phosphofructokinase; transferase(phosphotransferase); 2.40A {Geobacillus stearothermophilus} SCOP: c.89.1.1 PDB: 4pfk_A* 6pfk_A 1mto_A*
Probab=95.12  E-value=0.042  Score=31.99  Aligned_cols=40  Identities=30%  Similarity=0.444  Sum_probs=31.6

Q ss_pred             HHCCEEEEECCCHHHHHHHHHHHHCCCEEEEECC-------C---CCCCCC
Q ss_conf             5577999987954899999997412872994153-------4---332010
Q gi|254780754|r   35 EEADVIVVLGGDGFMLQSFHQSKEYDKPIYGMNC-------G---SVGFLM   75 (264)
Q Consensus        35 ~~~Dlii~iGGDGT~L~a~~~~~~~~~PilGIn~-------G---~lGFL~   75 (264)
                      .+.|.+++|||||||-.+.+ +....+|++||-.       |   +.||-+
T Consensus        92 ~~Id~li~iGG~~s~~~a~~-L~~~~~~vigiPkTIDNDl~~td~t~Gf~T  141 (319)
T 3pfk_A           92 HGIQGLVVIGGDGSYQGAKK-LTEHGFPCVGVPGTIDNDIPGTDFTIGFDT  141 (319)
T ss_dssp             HTCCEEEEEECHHHHHHHHH-HHHTTCCEEEEEBCSSCCCTTCSSCBTHHH
T ss_pred             HCCCEEEEECCHHHHHHHHH-HHHCCCCEEEEECCCCCCCCCCCCCCCHHH
T ss_conf             15775999888589999999-970698467330012688767556776889


No 12 
>1zxx_A 6-phosphofructokinase; allosteric regulation, lactobacillus bulgaricus, transferase; 1.85A {Lactobacillus delbrueckii subsp}
Probab=94.99  E-value=0.046  Score=31.75  Aligned_cols=52  Identities=17%  Similarity=0.309  Sum_probs=35.3

Q ss_pred             HHCCEEEEECCCHHHHHHHHHHHHCCCEEEEECC----------CCCCCCCCCCCHHHHHHHHHHC
Q ss_conf             5577999987954899999997412872994153----------4332010445878999866420
Q gi|254780754|r   35 EEADVIVVLGGDGFMLQSFHQSKEYDKPIYGMNC----------GSVGFLMNEYCIENLVERLSVA   90 (264)
Q Consensus        35 ~~~Dlii~iGGDGT~L~a~~~~~~~~~PilGIn~----------G~lGFL~~~~~~~~~~~~l~~~   90 (264)
                      .+.|.+++||||||+-.|.+ +....+|++||--          =+.||-+.   .+...+.++.+
T Consensus        92 ~~Id~Li~iGGdgS~~~a~~-l~~~~i~vigIPkTIDNDl~~td~t~Gf~TA---~~~~~~~i~~l  153 (319)
T 1zxx_A           92 HGIDAVVVIGGDGSYHGALQ-LTRHGFNSIGLPGTIDNDIPYTDATIGYDTA---CMTAMDAIDKI  153 (319)
T ss_dssp             TTCCEEEEEECHHHHHHHHH-HHHTTCCEEEEEEETTCCCTTCSCCEEHHHH---HHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCHHHHHHH-HHHCCCCEEEEEEECCCCCCCCCCCCCHHHH---HHHHHHHHHHH
T ss_conf             69989999379617999999-7753685677620016898884008689999---99999999999


No 13 
>2hig_A 6-phospho-1-fructokinase; transferase; 2.40A {Trypanosoma brucei} PDB: 3f5m_A*
Probab=94.95  E-value=0.043  Score=31.94  Aligned_cols=41  Identities=24%  Similarity=0.436  Sum_probs=30.6

Q ss_pred             HHCCEEEEECCCHHHHHHHHHHHH-----CCCEEEEECC-------C---CCCCCC
Q ss_conf             557799998795489999999741-----2872994153-------4---332010
Q gi|254780754|r   35 EEADVIVVLGGDGFMLQSFHQSKE-----YDKPIYGMNC-------G---SVGFLM   75 (264)
Q Consensus        35 ~~~Dlii~iGGDGT~L~a~~~~~~-----~~~PilGIn~-------G---~lGFL~   75 (264)
                      .+.|.+|+||||||+-.|......     .++||+||--       |   +.||-+
T Consensus       188 ~~Id~LivIGGdgS~~~A~~Lae~~~~~~~~i~VIGIPKTIDNDl~gtD~TiGFdT  243 (487)
T 2hig_A          188 LGVNILFTVGGDGTQRGALVISQEAKRRGVDISVFGVPKTIDNDLSFSHRTFGFQT  243 (487)
T ss_dssp             HTCSEEEEEECHHHHHHHHHHHHHHHHHTCCCEEEEEECCTTSSCCCSSCCTTHHH
T ss_pred             HCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCHHH
T ss_conf             49987999567478999999999988628983299840255688776023563557


No 14 
>1pfk_A Phosphofructokinase; transferase(phosphotransferase); HET: FBP ADP; 2.40A {Escherichia coli} SCOP: c.89.1.1 PDB: 2pfk_A
Probab=94.65  E-value=0.064  Score=30.88  Aligned_cols=51  Identities=29%  Similarity=0.602  Sum_probs=35.4

Q ss_pred             HHCCEEEEECCCHHHHHHHHHHHHCCCEEEEECC-------C---CCCCCCCCCCHHHHHHHHHH
Q ss_conf             5577999987954899999997412872994153-------4---33201044587899986642
Q gi|254780754|r   35 EEADVIVVLGGDGFMLQSFHQSKEYDKPIYGMNC-------G---SVGFLMNEYCIENLVERLSV   89 (264)
Q Consensus        35 ~~~Dlii~iGGDGT~L~a~~~~~~~~~PilGIn~-------G---~lGFL~~~~~~~~~~~~l~~   89 (264)
                      .+.|.+++||||||+-.|.+ ..+..+|++||=.       |   +.||-+.   .+.+.+.++.
T Consensus        93 ~~Id~li~iGGdgs~~~a~~-l~e~~~~vigIPkTIDNDl~~td~s~Gf~TA---~~~~~~~i~~  153 (320)
T 1pfk_A           93 RGIDALVVIGGDGSYMGAMR-LTEMGFPCIGLPGTIDNDIKGTDYTIGFFTA---LSTVVEAIDR  153 (320)
T ss_dssp             TTCCEEEEEECHHHHHHHHH-HHHTTCCEEEEEBCTTCCCTTCSCCBTHHHH---HHHHHHHHHH
T ss_pred             CCCCEEEEECCCHHHHHHHH-HHHCCCCEEEEEEEECCCCCCCCCCCCHHHH---HHHHHHHHHH
T ss_conf             69988999369368999999-7643674331211222799885338837888---9999999999


No 15 
>3hno_A Pyrophosphate-dependent phosphofructokinase; structural genomics, PSI-2, protein structure initiative; 2.00A {Nitrosospira multiformis atcc 25196} PDB: 3k2q_A
Probab=94.46  E-value=0.066  Score=30.77  Aligned_cols=41  Identities=15%  Similarity=0.101  Sum_probs=30.0

Q ss_pred             HHCCEEEEECCCHHHHHHHHHHH-----HCCCEEEEECC----------CCCCCCC
Q ss_conf             55779999879548999999974-----12872994153----------4332010
Q gi|254780754|r   35 EEADVIVVLGGDGFMLQSFHQSK-----EYDKPIYGMNC----------GSVGFLM   75 (264)
Q Consensus        35 ~~~Dlii~iGGDGT~L~a~~~~~-----~~~~PilGIn~----------G~lGFL~   75 (264)
                      .+.|.+|+||||||+-.|.+...     ..++|++||=-          -+.||-+
T Consensus       103 ~~Id~Li~IGGdgS~~~a~~L~~~~~~~~~~i~vIgIPKTIDNDl~~tD~t~GF~T  158 (419)
T 3hno_A          103 HDIGYFFYNGGGDSADTCLKVSQLSGTLGYPIQAIHVPKTVDNDLPITDCCPGFGS  158 (419)
T ss_dssp             TTEEEEEEEESHHHHHHHHHHHHHHHHTTCCCEEEEEECCTTCCCSSSSSCTTHHH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEECCCCHHH
T ss_conf             09987999758078999999999999708994189612432578776332764788


No 16 
>3opy_B 6-phosphofructo-1-kinase beta-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Probab=93.53  E-value=0.13  Score=28.87  Aligned_cols=52  Identities=15%  Similarity=0.206  Sum_probs=29.3

Q ss_pred             HCCEEEEECCCHHHHHHHHHHHH------CCCEEEEECC----------CCCCCCCCCCCHHHHHHHHHHC
Q ss_conf             57799998795489999999741------2872994153----------4332010445878999866420
Q gi|254780754|r   36 EADVIVVLGGDGFMLQSFHQSKE------YDKPIYGMNC----------GSVGFLMNEYCIENLVERLSVA   90 (264)
Q Consensus        36 ~~Dlii~iGGDGT~L~a~~~~~~------~~~PilGIn~----------G~lGFL~~~~~~~~~~~~l~~~   90 (264)
                      +.|.+++|||||||-.+.+....      .++|++||-.          -++||-+.   .+.+.+.++.+
T Consensus       662 ~Id~LivIGGdgS~~~a~~L~~~~~~~~~~~I~vVgIPkTIDNDl~gtD~SiGfdTA---~n~i~~aid~i  729 (941)
T 3opy_B          662 GFDGLILVGGFEAFISLHQLERARINYPSLRIPLVLIPATISNNVPGTEYSLGSDTC---LNSFMEYCDVI  729 (941)
T ss_dssp             TCSEEEEEESHHHHHHHHHHHHGGGTCGGGCSCEEEEEBCSSCCCTTCSCCBTHHHH---HHHHHHHHHHH
T ss_pred             CCCEEEEECCHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCHHHH---HHHHHHHHHHH
T ss_conf             999799916758999999999977542467973797114446898776778768889---99999999999


No 17 
>3opy_B 6-phosphofructo-1-kinase beta-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Probab=93.29  E-value=0.21  Score=27.61  Aligned_cols=54  Identities=17%  Similarity=0.289  Sum_probs=35.4

Q ss_pred             HHCCEEEEECCCHHHHHHHHHHH----------------------HCCCEEEEECC----------CCCCCCCCCCCHHH
Q ss_conf             55779999879548999999974----------------------12872994153----------43320104458789
Q gi|254780754|r   35 EEADVIVVLGGDGFMLQSFHQSK----------------------EYDKPIYGMNC----------GSVGFLMNEYCIEN   82 (264)
Q Consensus        35 ~~~Dlii~iGGDGT~L~a~~~~~----------------------~~~~PilGIn~----------G~lGFL~~~~~~~~   82 (264)
                      .+.|.+|+||||||+-.|.....                      ..+++|+||=-          -+.||.+.   .+.
T Consensus       275 ~~Id~LvvIGGDGSl~gA~~L~~e~~~~~~el~~~~~i~~~~~~~~~~i~VvGIPkTIDNDl~~tD~TiGf~TA---~~~  351 (941)
T 3opy_B          275 MGIDALIVCGGDGSLTGADRFRSEWPSLIEELLQTEQISQQQFNTHQNLNICGAVGSIDNDMSSTDATIGAFSS---LDR  351 (941)
T ss_dssp             HTCCEEEEEECHHHHHHHHHHHHTCCCCCCC--------CHHHHHTCSCEEEEEEEESSCCCSSCSSCEEHHHH---HHH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCEECCCCCCCCCCCHHHH---HHH
T ss_conf             69998999898158999999987634433443222246688875279955999646703689887578887999---999


Q ss_pred             HHHHHHHCC
Q ss_conf             998664201
Q gi|254780754|r   83 LVERLSVAV   91 (264)
Q Consensus        83 ~~~~l~~~~   91 (264)
                      +.+.++.+.
T Consensus       352 i~~aid~i~  360 (941)
T 3opy_B          352 ICRAIDYID  360 (941)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
T ss_conf             999999999


No 18 
>3opy_A 6-phosphofructo-1-kinase alpha-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Probab=93.28  E-value=0.13  Score=28.93  Aligned_cols=56  Identities=21%  Similarity=0.330  Sum_probs=35.6

Q ss_pred             HHCCEEEEECCCHHHHHHHHHH-----------------------HHCCCEEEEEC---------CC-CCCCCCCCCCHH
Q ss_conf             5577999987954899999997-----------------------41287299415---------34-332010445878
Q gi|254780754|r   35 EEADVIVVLGGDGFMLQSFHQS-----------------------KEYDKPIYGMN---------CG-SVGFLMNEYCIE   81 (264)
Q Consensus        35 ~~~Dlii~iGGDGT~L~a~~~~-----------------------~~~~~PilGIn---------~G-~lGFL~~~~~~~   81 (264)
                      .+.|.+|+||||||+-.|. .+                       ...+++|+||=         +. +.||-+.   .+
T Consensus       303 ~gId~LivIGGDGSltgA~-~l~~e~~~ll~el~~~~~It~e~~~~~~~i~VVGIPkTIDNDi~gTD~TiGfdTA---l~  378 (989)
T 3opy_A          303 NGIDALVVCGGDGSLTGAD-LFRKEWPELIKELLGEDKITKEQYETHRNLTIVGLVGSIDNDMCGTDSTIGAYSS---LE  378 (989)
T ss_dssp             TTCCEEEEEECHHHHHHHH-HHHHHTTCCCCC--------CHHHHHTTSCEEEEEEEESSCCCTTCSCCEEHHHH---HH
T ss_pred             CCCCEEEEECCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCEECCCCCCCCCCCHHHH---HH
T ss_conf             6999899989847899999-9876401222222002467799986289964999445865789767578888999---99


Q ss_pred             HHHHHHHHCCCCC
Q ss_conf             9998664201243
Q gi|254780754|r   82 NLVERLSVAVECT   94 (264)
Q Consensus        82 ~~~~~l~~~~~~~   94 (264)
                      .+.++++.+....
T Consensus       379 ~i~eaId~i~~TA  391 (989)
T 3opy_A          379 RIIELVDYIDATA  391 (989)
T ss_dssp             HHHHHHHHHHSSC
T ss_pred             HHHHHHHHHHHHH
T ss_conf             9999999999976


No 19 
>2f48_A Diphosphate--fructose-6-phosphate 1- phosphotransferase; HET: FBP; 2.11A {Borrelia burgdorferi B31} SCOP: c.89.1.1 PDB: 1kzh_A*
Probab=92.76  E-value=0.26  Score=27.06  Aligned_cols=40  Identities=20%  Similarity=0.326  Sum_probs=30.3

Q ss_pred             HCCEEEEECCCHHHHHHHHHHH-----HCCCEEEEECC-------C-----CCCCCC
Q ss_conf             5779999879548999999974-----12872994153-------4-----332010
Q gi|254780754|r   36 EADVIVVLGGDGFMLQSFHQSK-----EYDKPIYGMNC-------G-----SVGFLM   75 (264)
Q Consensus        36 ~~Dlii~iGGDGT~L~a~~~~~-----~~~~PilGIn~-------G-----~lGFL~   75 (264)
                      +.|.+|+||||||+-.|.....     ..+++|+||=.       |     ++||-+
T Consensus       166 ~Id~LviIGGddS~~~A~~Lae~~~~~~~~i~VIgVPKTIDNDl~~~~~d~s~GFdT  222 (555)
T 2f48_A          166 NLNAIIIIGGDDSNTNAAILAEYFKKNGENIQVIGVPKTIDADLRNDHIEISFGFDS  222 (555)
T ss_dssp             TCSEEEEEESHHHHHHHHHHHHHHHHTTCCCEEEEEEEETTCCCCCSSCCCCEEHHH
T ss_pred             CCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCHHH
T ss_conf             898899978768999999999999861679608984135367877752156633689


No 20 
>2a9v_A GMP synthase; NP_394403.1, , structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI; 2.24A {Thermoplasma acidophilum} SCOP: c.23.16.1
Probab=91.23  E-value=0.23  Score=27.33  Aligned_cols=69  Identities=16%  Similarity=0.218  Sum_probs=43.9

Q ss_pred             CCCCEEEEEEECCCHHHHHHHHHHHHHC----------CCCCHHHCCEEEEECCCHH-------HHHHHHHHHHCCCEEE
Q ss_conf             8765059999559989999999999870----------7888455779999879548-------9999999741287299
Q gi|254780754|r    2 DRNIQKIHFKASNAKKAQEAYDKFVKIY----------GNSTSEEADVIVVLGGDGF-------MLQSFHQSKEYDKPIY   64 (264)
Q Consensus         2 ~~~~~ki~i~~~~~~~a~~~~~~l~~~~----------~~~~~~~~Dlii~iGGDGT-------~L~a~~~~~~~~~Pil   64 (264)
                      ...|+||.++.+-..-...+..-|.+.-          ...+.+++|-+|.-||.+.       +....+.....++|+|
T Consensus        10 ~~~m~~i~iiD~g~~~~~~i~r~L~~lG~~~~vv~~~~~~~~l~~~dgiIl~GG~~~~~~~~~~~~~l~~~~~~~~~PiL   89 (212)
T 2a9v_A           10 HHHMLKIYVVDNGGQWTHREWRVLRELGVDTKIVPNDIDSSELDGLDGLVLSGGAPNIDEELDKLGSVGKYIDDHNYPIL   89 (212)
T ss_dssp             CCCCCBEEEEEESCCTTCHHHHHHHHTTCBCCEEETTSCGGGGTTCSEEEEEEECSCGGGTGGGHHHHHHHHHHCCSCEE
T ss_pred             CCCCCEEEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCHHHHHCCCEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCEE
T ss_conf             06766799999987689999999997898389996979999983699199979998434343789999999985799899


Q ss_pred             EECCCC
Q ss_conf             415343
Q gi|254780754|r   65 GMNCGS   70 (264)
Q Consensus        65 GIn~G~   70 (264)
                      ||=.|.
T Consensus        90 GIClG~   95 (212)
T 2a9v_A           90 GICVGA   95 (212)
T ss_dssp             EETHHH
T ss_pred             EEHHHH
T ss_conf             875988


No 21 
>3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, infectious diseases, isomerase, center for structural genomics of infectious diseases; 2.35A {Vibrio cholerae}
Probab=90.25  E-value=0.92  Score=23.56  Aligned_cols=39  Identities=18%  Similarity=0.176  Sum_probs=34.3

Q ss_pred             HHCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCC
Q ss_conf             557799998795489999999741287299415343320
Q gi|254780754|r   35 EEADVIVVLGGDGFMLQSFHQSKEYDKPIYGMNCGSVGF   73 (264)
Q Consensus        35 ~~~Dlii~iGGDGT~L~a~~~~~~~~~PilGIn~G~lGF   73 (264)
                      ++||+|+++|.-.+.|-++-.+...++|+.-|..|-+-+
T Consensus       110 ~kpD~VlV~GDr~e~la~a~aa~~~~ipi~HiegG~rs~  148 (396)
T 3dzc_A          110 EQPDVVLVHGDTATTFAASLAAYYQQIPVGHVEAGLRTG  148 (396)
T ss_dssp             HCCSEEEEETTSHHHHHHHHHHHTTTCCEEEETCCCCCS
T ss_pred             CCCCEEEEECCCCCHHHHHHHHHHHCCCEEEEEECCCCC
T ss_conf             199999995888622548999998299789997126546


No 22 
>3m3p_A Glutamine amido transferase; structural genomics, nysgrc, PSI-2; HET: MSE; 1.30A {Methylobacillus flagellatus} PDB: 3l83_A*
Probab=89.94  E-value=0.55  Score=24.96  Aligned_cols=68  Identities=12%  Similarity=0.234  Sum_probs=41.1

Q ss_pred             CCCEEEEEEECCCHHHHHHHHHHHHHCC-----------C---CCHHHCCEEEEECCCH----------HHHHHHHHHHH
Q ss_conf             7650599995599899999999998707-----------8---8845577999987954----------89999999741
Q gi|254780754|r    3 RNIQKIHFKASNAKKAQEAYDKFVKIYG-----------N---STSEEADVIVVLGGDG----------FMLQSFHQSKE   58 (264)
Q Consensus         3 ~~~~ki~i~~~~~~~a~~~~~~l~~~~~-----------~---~~~~~~Dlii~iGGDG----------T~L~a~~~~~~   58 (264)
                      +.||++.++-....+..-....+.+..+           +   .+.+++|.+|+.||-.          .....++.+..
T Consensus         1 ~~mk~vlv~qh~~~e~~g~~~~~l~~~g~~~~v~~~~~~~~~P~~~~~~dglii~Gg~~~~~d~~p~~~~~~~~i~~~~~   80 (250)
T 3m3p_A            1 MSLKPVMIIQFSASEGPGHFGDFLAGEHIPFQVLRMDRSDPLPAEIRDCSGLAMMGGPMSANDDLPWMPTLLALIRDAVA   80 (250)
T ss_dssp             -CCCCEEEEESSSSCCCHHHHHHHHHTTCCEEEEEGGGTCCCCSCGGGSSEEEECCCSSCTTSCCTTHHHHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf             99864999957999981399999985899799997899987877763389899909998777877658999999999997


Q ss_pred             CCCEEEEECCCC
Q ss_conf             287299415343
Q gi|254780754|r   59 YDKPIYGMNCGS   70 (264)
Q Consensus        59 ~~~PilGIn~G~   70 (264)
                      .++|+|||=.|+
T Consensus        81 ~~~PilGIC~G~   92 (250)
T 3m3p_A           81 QRVPVIGHCLGG   92 (250)
T ss_dssp             HTCCEEEETHHH
T ss_pred             CCCCEEEEEHHH
T ss_conf             599889985656


No 23 
>2v4u_A CTP synthase 2; pyrimidine biosynthesis, glutamine amidotransferase, glutaminase domain, 5-OXO-L-norleucine, DON, ligase, phosphoprotein; HET: CYD; 2.3A {Homo sapiens} PDB: 2vkt_A
Probab=89.90  E-value=0.26  Score=27.06  Aligned_cols=36  Identities=33%  Similarity=0.459  Sum_probs=31.2

Q ss_pred             HHHCCEEEEECCCHH-----HHHHHHHHHHCCCEEEEECCC
Q ss_conf             455779999879548-----999999974128729941534
Q gi|254780754|r   34 SEEADVIVVLGGDGF-----MLQSFHQSKEYDKPIYGMNCG   69 (264)
Q Consensus        34 ~~~~Dlii~iGGDGT-----~L~a~~~~~~~~~PilGIn~G   69 (264)
                      .+++|-|++.||=|.     .+.|++.+...++|+|||=+|
T Consensus        88 L~~~dGIlVPGGFG~RGieGkI~Ai~yARen~IPfLGIClG  128 (289)
T 2v4u_A           88 LCKADGILVPGGFGIRGTLGKLQAISWARTKKIPFLGVXLG  128 (289)
T ss_dssp             HHHCSEEEECSCCSSTTHHHHHHHHHHHHHTTCCEEEETHH
T ss_pred             HCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHH
T ss_conf             43488379689788776158999999999849970235678


No 24 
>1gpw_B Amidotransferase HISH; lyase/transferase, complex (lyase/transferase), histidine biosynthesis, glutaminase, glutamine amidotransferase; 2.4A {Thermotoga maritima} SCOP: c.23.16.1 PDB: 1k9v_F 1kxj_A
Probab=88.29  E-value=0.63  Score=24.62  Aligned_cols=65  Identities=12%  Similarity=0.204  Sum_probs=35.9

Q ss_pred             EEEEEEECC--CHHH-HHHHHHHHHHC--------CCCCHHHCCEEEEEC-CC-HHH---------HHHHHHHHHCCCEE
Q ss_conf             059999559--9899-99999999870--------788845577999987-95-489---------99999974128729
Q gi|254780754|r    6 QKIHFKASN--AKKA-QEAYDKFVKIY--------GNSTSEEADVIVVLG-GD-GFM---------LQSFHQSKEYDKPI   63 (264)
Q Consensus         6 ~ki~i~~~~--~~~a-~~~~~~l~~~~--------~~~~~~~~Dlii~iG-GD-GT~---------L~a~~~~~~~~~Pi   63 (264)
                      |||+++...  +-.+ ....+++...+        .....+.+|.+|.=| |- ++.         ..+++.+...++|+
T Consensus         1 MkI~IiDyg~gN~~si~~~l~~~g~~~~~~~~~~~~~~~~~~~D~iIlPG~G~~~~~~~~l~~~~l~~~I~~~~~~~~Pi   80 (201)
T 1gpw_B            1 MRIGIISVGPGNIMNLYRGVKRASENFEDVSIELVESPRNDLYDLLFIPGVGHFGEGMRRLRENDLIDFVRKHVEDERYV   80 (201)
T ss_dssp             CEEEEECCSSSCCHHHHHHHHHHSTTBSSCEEEEECSCCSSCCSEEEECCCSCSHHHHHHHHHTTCHHHHHHHHHTTCEE
T ss_pred             CEEEEEECCCCHHHHHHHHHHHHCCCCCCCEEEEECCHHHCCCCEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCE
T ss_conf             98999917985899999999985620453236970774660289799989875899999965658788999999769988


Q ss_pred             EEECCCC
Q ss_conf             9415343
Q gi|254780754|r   64 YGMNCGS   70 (264)
Q Consensus        64 lGIn~G~   70 (264)
                      |||=.|.
T Consensus        81 LGIClG~   87 (201)
T 1gpw_B           81 VGVCLGM   87 (201)
T ss_dssp             EEETHHH
T ss_pred             EEEEEEE
T ss_conf             9998617


No 25 
>1vgv_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, isomerase; HET: UD1; 2.31A {Escherichia coli} SCOP: c.87.1.3 PDB: 1f6d_A*
Probab=87.04  E-value=1.1  Score=23.14  Aligned_cols=39  Identities=18%  Similarity=0.094  Sum_probs=34.8

Q ss_pred             HHCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCC
Q ss_conf             557799998795489999999741287299415343320
Q gi|254780754|r   35 EEADVIVVLGGDGFMLQSFHQSKEYDKPIYGMNCGSVGF   73 (264)
Q Consensus        35 ~~~Dlii~iGGDGT~L~a~~~~~~~~~PilGIn~G~lGF   73 (264)
                      .++|+++++|...+.|-++-.+...++|+.-|..|-.++
T Consensus        85 ~kpD~v~v~GDr~e~la~a~aa~~~~Ipi~HiegG~~s~  123 (384)
T 1vgv_A           85 FKPDVVLVHGDTTTTLATSLAAFYQRIPVGHVEAGLRTG  123 (384)
T ss_dssp             HCCSEEEEETTCHHHHHHHHHHHTTTCCEEEESCCCCCS
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf             599989996898437669999997599789984144567


No 26 
>3ot5_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta; HET: PGE; 2.20A {Listeria monocytogenes}
Probab=86.44  E-value=1.3  Score=22.55  Aligned_cols=39  Identities=15%  Similarity=0.152  Sum_probs=34.6

Q ss_pred             HHCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCC
Q ss_conf             557799998795489999999741287299415343320
Q gi|254780754|r   35 EEADVIVVLGGDGFMLQSFHQSKEYDKPIYGMNCGSVGF   73 (264)
Q Consensus        35 ~~~Dlii~iGGDGT~L~a~~~~~~~~~PilGIn~G~lGF   73 (264)
                      ++||++++.|...+.|-++-.+...++|+.-|..|-..|
T Consensus       113 ~kPD~vlV~GDr~~~la~alaa~~~~Ipi~HiegG~rs~  151 (403)
T 3ot5_A          113 ENPDIVLVHGDTTTSFAAGLATFYQQKMLGHVEAGLRTW  151 (403)
T ss_dssp             HCCSEEEEETTCHHHHHHHHHHHHTTCEEEEESCCCCCS
T ss_pred             HCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEECCCCCC
T ss_conf             399999996888048999999998199789996466567


No 27 
>2w7t_A CTP synthetase, putative cytidine triphosphate synthase; glutaminase domain, trypsanosoma brucei, ligase, acivicin; HET: 5CS; 2.10A {Trypanosoma brucei}
Probab=85.83  E-value=0.59  Score=24.78  Aligned_cols=36  Identities=25%  Similarity=0.324  Sum_probs=31.7

Q ss_pred             HHHCCEEEEECCCHH-----HHHHHHHHHHCCCEEEEECCC
Q ss_conf             455779999879548-----999999974128729941534
Q gi|254780754|r   34 SEEADVIVVLGGDGF-----MLQSFHQSKEYDKPIYGMNCG   69 (264)
Q Consensus        34 ~~~~Dlii~iGGDGT-----~L~a~~~~~~~~~PilGIn~G   69 (264)
                      ..++|-|++-||=|.     .+.|++.+...++|+|||=.|
T Consensus        65 L~~~dGIlvpgGFG~RG~eGkI~Ai~yARen~iPfLGIClG  105 (273)
T 2w7t_A           65 LLGCDGIFVPGGFGNRGVDGKCAAAQVARMNNIPYFGVXLG  105 (273)
T ss_dssp             HHTCSEEEECCCCTTTTHHHHHHHHHHHHHHTCCEEEETHH
T ss_pred             HCCCCCEEECCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHH
T ss_conf             42577468588578776478999999999748860245566


No 28 
>1ka9_H Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.23.16.1
Probab=84.43  E-value=1.4  Score=22.39  Aligned_cols=65  Identities=20%  Similarity=0.251  Sum_probs=38.2

Q ss_pred             EEEEEEECCCHHHHHHHHHHHHHC-------CCCCHHHCCEEEEECC-C-H---------HHHHHHHHHHHCCCEEEEEC
Q ss_conf             059999559989999999999870-------7888455779999879-5-4---------89999999741287299415
Q gi|254780754|r    6 QKIHFKASNAKKAQEAYDKFVKIY-------GNSTSEEADVIVVLGG-D-G---------FMLQSFHQSKEYDKPIYGMN   67 (264)
Q Consensus         6 ~ki~i~~~~~~~a~~~~~~l~~~~-------~~~~~~~~Dlii~iGG-D-G---------T~L~a~~~~~~~~~PilGIn   67 (264)
                      ||+.|+....-.-..+.+.+.+.-       +..+.+++|.+|.=|+ . +         -+..+.+.+...++|||||=
T Consensus         3 mKi~IID~g~gN~~Sv~~~l~~lg~~~~ii~~~~~l~~~D~iIlPG~G~~~~~~~~l~~~~~~~~i~~~~~~~~PILGIC   82 (200)
T 1ka9_H            3 MKALLIDYGSGNLRSAAKALEAAGFSVAVAQDPKAHEEADLLVLPGQGHFGQVMRAFQESGFVERVRRHLERGLPFLGIC   82 (200)
T ss_dssp             CEEEEECSSCSCHHHHHHHHHHTTCEEEEESSTTSCSSCSEEEECCCSCHHHHHHTTSSSCTHHHHHHHHHTTCCEEECT
T ss_pred             CEEEEEECCCCHHHHHHHHHHHCCCCEEEECCHHHHHHCCEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCEEEEH
T ss_conf             77999948985899999999987998999889999853798999598758999976654592999999987599389982


Q ss_pred             CCC
Q ss_conf             343
Q gi|254780754|r   68 CGS   70 (264)
Q Consensus        68 ~G~   70 (264)
                      .|.
T Consensus        83 lG~   85 (200)
T 1ka9_H           83 VGM   85 (200)
T ss_dssp             HHH
T ss_pred             HHH
T ss_conf             999


No 29 
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=84.14  E-value=2.1  Score=21.32  Aligned_cols=66  Identities=8%  Similarity=0.084  Sum_probs=44.6

Q ss_pred             CCCCCEEEEEEECCCHHHHHHHHHHHHH-CCC---CC---------HHHCCEEEEECCCH-HHHHHHHHHHHCCCEEEEE
Q ss_conf             9876505999955998999999999987-078---88---------45577999987954-8999999974128729941
Q gi|254780754|r    1 MDRNIQKIHFKASNAKKAQEAYDKFVKI-YGN---ST---------SEEADVIVVLGGDG-FMLQSFHQSKEYDKPIYGM   66 (264)
Q Consensus         1 m~~~~~ki~i~~~~~~~a~~~~~~l~~~-~~~---~~---------~~~~Dlii~iGGDG-T~L~a~~~~~~~~~PilGI   66 (264)
                      |.+..|||.++.++..-++.+...|.+. |..   .+         ...+|+++.=|.|| .+++.+|.. ...+||+-+
T Consensus        14 ~p~~~mrILvVEDd~~~~~~l~~~L~~~G~~v~~a~~g~~al~~l~~~~~DlviLp~~~G~ell~~ir~~-~~~~piiil   92 (137)
T 2pln_A           14 VPRGSMRVLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLMDIRNYDLVMVSDKNALSFVSRIKEK-HSSIVVLVS   92 (137)
T ss_dssp             -CTTCSEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHSCCSEEEECSTTHHHHHHHHHHH-STTSEEEEE
T ss_pred             CCCCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHC-CCCCCEEEE
T ss_conf             8988888999959999999999999988999999899999999997289999998278763799999962-889975999


Q ss_pred             C
Q ss_conf             5
Q gi|254780754|r   67 N   67 (264)
Q Consensus        67 n   67 (264)
                      .
T Consensus        93 T   93 (137)
T 2pln_A           93 S   93 (137)
T ss_dssp             E
T ss_pred             E
T ss_conf             6


No 30 
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver domain, target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=84.00  E-value=2.1  Score=21.28  Aligned_cols=91  Identities=13%  Similarity=0.101  Sum_probs=54.9

Q ss_pred             CCCEEEEEEECCCHHHHHHHHHHHHH-CCC---C-----------CHHHCCEEEE----ECCCHHH-HHHHHHHHHCCCE
Q ss_conf             76505999955998999999999987-078---8-----------8455779999----8795489-9999997412872
Q gi|254780754|r    3 RNIQKIHFKASNAKKAQEAYDKFVKI-YGN---S-----------TSEEADVIVV----LGGDGFM-LQSFHQSKEYDKP   62 (264)
Q Consensus         3 ~~~~ki~i~~~~~~~a~~~~~~l~~~-~~~---~-----------~~~~~Dlii~----iGGDGT~-L~a~~~~~~~~~P   62 (264)
                      ++|.||-++.++..-++.+...|... |..   .           ...++|++++    =|+||.- ++..+. ....+|
T Consensus         1 M~m~rILIVDDd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~~~~~~dlvilD~~mp~~~G~~l~~~~~~-~~~~~p   79 (143)
T 3jte_A            1 MSLAKILVIDDESTILQNIKFLLEIDGNEVLTASSSTEGLRIFTENCNSIDVVITDMKMPKLSGMDILREIKK-ITPHMA   79 (143)
T ss_dssp             --CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHTTTTCCEEEEESCCSSSCHHHHHHHHHH-HCTTCE
T ss_pred             CCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHH-HCCCCC
T ss_conf             9998899996999999999999998799999978899999999845999739997477777788999999998-789996


Q ss_pred             EEEECC-------------CCCCCCCCCCCHHHHHHHHHHCCCCC
Q ss_conf             994153-------------43320104458789998664201243
Q gi|254780754|r   63 IYGMNC-------------GSVGFLMNEYCIENLVERLSVAVECT   94 (264)
Q Consensus        63 ilGIn~-------------G~lGFL~~~~~~~~~~~~l~~~~~~~   94 (264)
                      |+-+..             |--+||.-+++.+++...+.......
T Consensus        80 vI~lT~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~l~~~  124 (143)
T 3jte_A           80 VIILTGHGDLDNAILAMKEGAFEYLRKPVTAQDLSIAINNAINRK  124 (143)
T ss_dssp             EEEEECTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHH
T ss_conf             999988899999999998699899828999999999999999999


No 31 
>1oi4_A Hypothetical protein YHBO; PFPI/THIJ family, complete proteome, PFPI, THIJ, bacterial targets at IGS-CNRS, france, BIGS, structural genomics; 2.03A {Escherichia coli} SCOP: c.23.16.2
Probab=83.72  E-value=1.5  Score=22.26  Aligned_cols=39  Identities=21%  Similarity=0.362  Sum_probs=31.7

Q ss_pred             CHHHCCEEEEECCCHH--------HHHHHHHHHHCCCEEEEECCCCC
Q ss_conf             8455779999879548--------99999997412872994153433
Q gi|254780754|r   33 TSEEADVIVVLGGDGF--------MLQSFHQSKEYDKPIYGMNCGSV   71 (264)
Q Consensus        33 ~~~~~Dlii~iGGDGT--------~L~a~~~~~~~~~PilGIn~G~l   71 (264)
                      .++++|.+++.||.|+        ++..++.+...++||.+|..|..
T Consensus        83 ~~~~yDaliiPGG~~~~~l~~~~~l~~~l~~~~~~~k~i~aIC~g~~  129 (193)
T 1oi4_A           83 TPAEFDALLLPGGHSPDYLRGDNRFVTFTRDFVNSGKPVFAICHGPQ  129 (193)
T ss_dssp             CGGGCSEEEECCBTHHHHHTTSHHHHHHHHHHHHTTCCEEEETTTHH
T ss_pred             CHHHCCEEEECCCCCHHHHHHCHHHHHHHHHHHHHCCEEECCCHHHH
T ss_conf             96249399989983086763195889999998860660340470789


No 32 
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein structure initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=83.30  E-value=2.3  Score=21.10  Aligned_cols=90  Identities=11%  Similarity=0.107  Sum_probs=55.1

Q ss_pred             CCCEEEEEEECCCHHHHHHHHHHHHHCCC-----CCH---------HHCCEEEE----ECCCH-HHHHHHHHHHH-CCCE
Q ss_conf             76505999955998999999999987078-----884---------55779999----87954-89999999741-2872
Q gi|254780754|r    3 RNIQKIHFKASNAKKAQEAYDKFVKIYGN-----STS---------EEADVIVV----LGGDG-FMLQSFHQSKE-YDKP   62 (264)
Q Consensus         3 ~~~~ki~i~~~~~~~a~~~~~~l~~~~~~-----~~~---------~~~Dlii~----iGGDG-T~L~a~~~~~~-~~~P   62 (264)
                      ++|.||.++.++......+...|. ..+-     ...         ..+|+|++    =|.|| .+++.++.... .++|
T Consensus         1 m~~~rILIVDD~~~~~~~l~~~L~-~~G~~v~~a~~g~eal~~l~~~~pdliilD~~mP~~dG~el~~~ir~~~~~~~ip   79 (138)
T 3c3m_A            1 MSLYTILVVDDSPMIVDVFVTMLE-RGGYRPITAFSGEECLEALNATPPDLVLLDIMMEPMDGWETLERIKTDPATRDIP   79 (138)
T ss_dssp             -CCCEEEEECSCHHHHHHHHHHHH-HTTCEEEEESSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTSC
T ss_pred             CCCCEEEEEECCHHHHHHHHHHHH-HCCCEEEEECCHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCC
T ss_conf             998989999799999999999999-8799999989999999997538998999706789998899999998486558998


Q ss_pred             EEEECC-------------CCCCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf             994153-------------4332010445878999866420124
Q gi|254780754|r   63 IYGMNC-------------GSVGFLMNEYCIENLVERLSVAVEC   93 (264)
Q Consensus        63 ilGIn~-------------G~lGFL~~~~~~~~~~~~l~~~~~~   93 (264)
                      |+.+..             |--+||+-+++.+++.+.+......
T Consensus        80 vI~ls~~~~~~~~~~~~~~G~~d~l~KP~~~~~L~~~l~~~l~r  123 (138)
T 3c3m_A           80 VLMLTAKPLTPEEANEYGSYIEDYILKPTTHHQLYEAIEHVLAR  123 (138)
T ss_dssp             EEEEESSCCCHHHHHHTTTTCSEEEECCCHHHHHHHHHHHHHSC
T ss_pred             EEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHH
T ss_conf             79986379899999998679988998989999999999999996


No 33 
>1vco_A CTP synthetase; tetramer, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLN; 2.15A {Thermus thermophilus} SCOP: c.23.16.1 c.37.1.10 PDB: 1vcn_A 1vcm_A
Probab=82.92  E-value=0.47  Score=25.39  Aligned_cols=35  Identities=26%  Similarity=0.441  Sum_probs=31.2

Q ss_pred             HHCCEEEEECCCHH-----HHHHHHHHHHCCCEEEEECCC
Q ss_conf             55779999879548-----999999974128729941534
Q gi|254780754|r   35 EEADVIVVLGGDGF-----MLQSFHQSKEYDKPIYGMNCG   69 (264)
Q Consensus        35 ~~~Dlii~iGGDGT-----~L~a~~~~~~~~~PilGIn~G   69 (264)
                      +++|-|++-||=|.     .+.|++.+...++|+|||=+|
T Consensus       354 ~~~dGIlVPGGFG~RGiEGKI~Ai~yARen~IPfLGICLG  393 (550)
T 1vco_A          354 RDVSGILVPGGFGVRGIEGKVRAAQYARERKIPYLGICLG  393 (550)
T ss_dssp             TTCSCEEECCCCSSTTHHHHHHHHHHHHHTTCCEEEETHH
T ss_pred             HCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf             0588389417787677458999999898739984200122


No 34 
>1g2i_A Protease I; intracellular protease, ATP-independent intracellular protease, catalytical triad, PFPI, cysteine protease, nucleophIle elbow; 2.00A {Pyrococcus horikoshii} SCOP: c.23.16.2
Probab=82.29  E-value=1.7  Score=21.80  Aligned_cols=40  Identities=23%  Similarity=0.286  Sum_probs=33.1

Q ss_pred             CCHHHCCEEEEECCCHH--------HHHHHHHHHHCCCEEEEECCCCC
Q ss_conf             88455779999879548--------99999997412872994153433
Q gi|254780754|r   32 STSEEADVIVVLGGDGF--------MLQSFHQSKEYDKPIYGMNCGSV   71 (264)
Q Consensus        32 ~~~~~~Dlii~iGGDGT--------~L~a~~~~~~~~~PilGIn~G~l   71 (264)
                      ..++++|.+++.||.|+        ++..++.+...++++.+|..|.+
T Consensus        57 ~~~~~~d~liipGG~~~~~~~~~~~l~~~l~~~~~~~k~i~aic~g~~  104 (166)
T 1g2i_A           57 VNPEEFDALVLPGGRAPERVRLNEKAVSIARKMFSEGKPVASICHGPQ  104 (166)
T ss_dssp             CCGGGCSEEEECCBSHHHHHTTCHHHHHHHHHHHHTTCCEEEETTTTH
T ss_pred             CCCCCCCEEEECCCCCHHHHCCCHHHHHHHHHHHHCCCEEEECCCHHH
T ss_conf             792008789984653044421587889999999864999983361889


No 35 
>1q7r_A Predicted amidotransferase; structural genomics, YAAE, PDX2, predicted glutamine amidotransferase, PSI; HET: MSE; 1.90A {Geobacillus stearothermophilus} SCOP: c.23.16.1
Probab=81.53  E-value=2.6  Score=20.69  Aligned_cols=66  Identities=21%  Similarity=0.333  Sum_probs=37.5

Q ss_pred             CCCEEEEEEECCCHHHHHHHHHHHHHCC--------CCCHHHCCEEEEECCCHH----------HHHHHHHHHHCCCEEE
Q ss_conf             7650599995599899999999998707--------888455779999879548----------9999999741287299
Q gi|254780754|r    3 RNIQKIHFKASNAKKAQEAYDKFVKIYG--------NSTSEEADVIVVLGGDGF----------MLQSFHQSKEYDKPIY   64 (264)
Q Consensus         3 ~~~~ki~i~~~~~~~a~~~~~~l~~~~~--------~~~~~~~Dlii~iGGDGT----------~L~a~~~~~~~~~Pil   64 (264)
                      ...|||++++-.-. -.+..+-|. ..+        .++.+++|.+|.=||--+          +..+++.+...++|+|
T Consensus        21 ~~~mkigvl~~~Gn-~~s~~~AL~-~lG~~~~iv~~~~~l~~~D~lILPGG~~~~~~~~l~~~~l~~~I~~~~~~gkPiL   98 (219)
T 1q7r_A           21 QSNMKIGVLGLQGA-VREHVRAIE-ACGAEAVIVKKSEQLEGLDGLVLPGGESTTMRRLIDRYGLMEPLKQFAAAGKPMF   98 (219)
T ss_dssp             CCCCEEEEESCGGG-CHHHHHHHH-HTTCEEEEECSGGGGTTCSEEEECCCCHHHHHHHHHHTTCHHHHHHHHHTTCCEE
T ss_pred             CCCCEEEEEECCCC-HHHHHHHHH-HCCCCEEEECCHHHHHCCCEEEECCCCHHHHHHHHHHCCCHHHHHHHHHCCCCEE
T ss_conf             26977999965883-999999999-8799699989989982499999999987999998657873899999997799799


Q ss_pred             EECCCC
Q ss_conf             415343
Q gi|254780754|r   65 GMNCGS   70 (264)
Q Consensus        65 GIn~G~   70 (264)
                      ||=.|.
T Consensus        99 GIClGm  104 (219)
T 1q7r_A           99 GTCAGL  104 (219)
T ss_dssp             EETTHH
T ss_pred             EECCCH
T ss_conf             994006


No 36 
>3nva_A CTP synthase; rossman fold, nucleotide binding, LIG; 2.50A {Sulfolobus solfataricus}
Probab=81.45  E-value=1.1  Score=23.19  Aligned_cols=36  Identities=25%  Similarity=0.433  Sum_probs=31.8

Q ss_pred             HHHCCEEEEECCCHH-----HHHHHHHHHHCCCEEEEECCC
Q ss_conf             455779999879548-----999999974128729941534
Q gi|254780754|r   34 SEEADVIVVLGGDGF-----MLQSFHQSKEYDKPIYGMNCG   69 (264)
Q Consensus        34 ~~~~Dlii~iGGDGT-----~L~a~~~~~~~~~PilGIn~G   69 (264)
                      .+++|-|++-||=|.     .+.|++.+...++|+|||=+|
T Consensus       348 L~~~dGIlVPGGFG~RGiEGkI~Ai~yAREn~IPfLGICLG  388 (535)
T 3nva_A          348 LGNVNGIIVLPGFGSRGAEGKIKAIKYAREHNIPFLGICFG  388 (535)
T ss_dssp             TTSCSEEEECCCCSSTTHHHHHHHHHHHHHHTCCEEEETHH
T ss_pred             HHCCCCEEECCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHH
T ss_conf             73288189579876565148999999998649980214432


No 37 
>1ta9_A Glycerol dehydrogenase; oxidoreductase; 1.90A {Schizosaccharomyces pombe}
Probab=81.06  E-value=2.1  Score=21.29  Aligned_cols=33  Identities=21%  Similarity=0.310  Sum_probs=26.6

Q ss_pred             HHCCEEEEECCCHHHHHHHHHHH-HCCCEEEEECC
Q ss_conf             55779999879548999999974-12872994153
Q gi|254780754|r   35 EEADVIVVLGGDGFMLQSFHQSK-EYDKPIYGMNC   68 (264)
Q Consensus        35 ~~~Dlii~iGGDGT~L~a~~~~~-~~~~PilGIn~   68 (264)
                      +++|+||.+|| |+.+-+++... ...+|++-|-+
T Consensus       144 ~~~D~IIAVGG-GSviD~AK~ia~~~~~p~i~VPT  177 (450)
T 1ta9_A          144 DDTQVIIGVGG-GKTMDSAKYIAHSMNLPSIICPT  177 (450)
T ss_dssp             TTCCEEEEEES-HHHHHHHHHHHHHTTCCEEEEES
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHCCCCEEEECC
T ss_conf             28998999679-63868889988642786688458


No 38 
>1s1m_A CTP synthase; CTP synthetase, UTP:ammonia ligase (ADP-forming), cytidine 5'-triphosphate synthase, ammonia lyase; 2.30A {Escherichia coli} SCOP: c.23.16.1 c.37.1.10 PDB: 2ad5_A*
Probab=80.79  E-value=1.9  Score=21.52  Aligned_cols=38  Identities=29%  Similarity=0.514  Sum_probs=32.7

Q ss_pred             CCHHHCCEEEEECCCHH-----HHHHHHHHHHCCCEEEEECCC
Q ss_conf             88455779999879548-----999999974128729941534
Q gi|254780754|r   32 STSEEADVIVVLGGDGF-----MLQSFHQSKEYDKPIYGMNCG   69 (264)
Q Consensus        32 ~~~~~~Dlii~iGGDGT-----~L~a~~~~~~~~~PilGIn~G   69 (264)
                      +..+++|-|++-||=|.     .+.|++.+...++|+|||=+|
T Consensus       339 ~~L~~~dGIlVPGGFG~RGiEGKI~Ai~yARen~IPfLGICLG  381 (545)
T 1s1m_A          339 EILKGLDAILVPGGFGYRGVEGMITTARFARENNIPYLGICLG  381 (545)
T ss_dssp             TTTTTCSEEEECCCCSSTTHHHHHHHHHHHHHTTCCEEEETHH
T ss_pred             HHHCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCEEEHHHH
T ss_conf             4421356199678888777031999999997679985324676


No 39 
>3beo_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, allosteric, regulation, isomerase; HET: UD1 UDP; 1.70A {Bacillus anthracis} PDB: 1o6c_A
Probab=80.62  E-value=2.6  Score=20.76  Aligned_cols=38  Identities=13%  Similarity=0.183  Sum_probs=33.6

Q ss_pred             HCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCC
Q ss_conf             57799998795489999999741287299415343320
Q gi|254780754|r   36 EADVIVVLGGDGFMLQSFHQSKEYDKPIYGMNCGSVGF   73 (264)
Q Consensus        36 ~~Dlii~iGGDGT~L~a~~~~~~~~~PilGIn~G~lGF   73 (264)
                      +||+++++|.-.+.|-++-.+...++|+.-|..|-.-+
T Consensus        95 kpD~vlv~GDr~e~la~a~aa~~~~ipi~HiegG~rs~  132 (375)
T 3beo_A           95 KPDIVLVHGDTTTTFIASLAAFYNQIPVGHVEAGLRTW  132 (375)
T ss_dssp             CCSEEEEETTSHHHHHHHHHHHHTTCCEEEESCCCCCS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf             99889994687247779999998198389962476547


No 40 
>1o1y_A Conserved hypothetical protein TM1158; structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 1.70A {Thermotoga maritima} SCOP: c.23.16.1
Probab=80.31  E-value=1.6  Score=21.97  Aligned_cols=38  Identities=29%  Similarity=0.483  Sum_probs=27.2

Q ss_pred             CHHHCCEEEEECCC------H------HHHHHHHHHHHCCCEEEEECCCC
Q ss_conf             84557799998795------4------89999999741287299415343
Q gi|254780754|r   33 TSEEADVIVVLGGD------G------FMLQSFHQSKEYDKPIYGMNCGS   70 (264)
Q Consensus        33 ~~~~~Dlii~iGGD------G------T~L~a~~~~~~~~~PilGIn~G~   70 (264)
                      ..+++|.+|+.||-      .      ......+.+...++|+|||=.|+
T Consensus        54 ~~~~~D~lii~GGp~~~~~~~~~p~~~~~~~li~~~~~~~~PiLGIClG~  103 (239)
T 1o1y_A           54 PLEEYSLVVLLGGYMGAYEEEKYPFLKYEFQLIEEILKKEIPFLGICLGS  103 (239)
T ss_dssp             CGGGCSEEEECCCSCCTTCTTTCTHHHHHHHHHHHHHHHTCCEEEETHHH
T ss_pred             CHHHCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECHHH
T ss_conf             63228989988999877777668212999999999997699999981899


No 41 
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=79.72  E-value=3  Score=20.31  Aligned_cols=89  Identities=20%  Similarity=0.301  Sum_probs=54.6

Q ss_pred             CCCCCEEEEEEECCCHHHHHHHHHHHHHCCC-----C----------CHHHCCEEEE---E-CC-CH-HHHHHHHHHHHC
Q ss_conf             9876505999955998999999999987078-----8----------8455779999---8-79-54-899999997412
Q gi|254780754|r    1 MDRNIQKIHFKASNAKKAQEAYDKFVKIYGN-----S----------TSEEADVIVV---L-GG-DG-FMLQSFHQSKEY   59 (264)
Q Consensus         1 m~~~~~ki~i~~~~~~~a~~~~~~l~~~~~~-----~----------~~~~~Dlii~---i-GG-DG-T~L~a~~~~~~~   59 (264)
                      |..+-+|+.++ .+++...+....+.+..+-     .          ....+|+|+.   + +| || .+++..+..  .
T Consensus         1 mslk~~rILiV-DD~~~~~~~l~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~dlillD~~mp~g~dG~e~~~~ir~~--~   77 (140)
T 3h5i_A            1 MSLKDKKILIV-EDSKFQAKTIANILNKYGYTVEIALTGEAAVEKVSGGWYPDLILMDIELGEGMDGVQTALAIQQI--S   77 (140)
T ss_dssp             -----CEEEEE-CSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTTCCCSEEEEESSCSSSCCHHHHHHHHHHH--C
T ss_pred             CCCCCCEEEEE-ECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHC--C
T ss_conf             99899999999-59899999999999987999999898999999998469998999726653357899999999856--9


Q ss_pred             CCEEEEECC-------------CCCCCCCCCCCHHHHHHHHHHCCC
Q ss_conf             872994153-------------433201044587899986642012
Q gi|254780754|r   60 DKPIYGMNC-------------GSVGFLMNEYCIENLVERLSVAVE   92 (264)
Q Consensus        60 ~~PilGIn~-------------G~lGFL~~~~~~~~~~~~l~~~~~   92 (264)
                      ++||+-+..             |--+||+-++..+++...+.....
T Consensus        78 ~~PvI~lT~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~l~  123 (140)
T 3h5i_A           78 ELPVVFLTAHTEPAVVEKIRSVTAYGYVMKSATEQVLITIVEMALR  123 (140)
T ss_dssp             CCCEEEEESSSSCCCCGGGGGSCEEEEEETTCCHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
T ss_conf             9989999899999999999987999899898999999999999999


No 42 
>2iss_D Glutamine amidotransferase subunit PDXT; (beta/alpha)8-barrel, alpha/beta three layer sandwich, lyase; HET: 5RP; 2.90A {Thermotoga maritima}
Probab=79.51  E-value=1.6  Score=22.12  Aligned_cols=62  Identities=15%  Similarity=0.242  Sum_probs=35.8

Q ss_pred             EEEEEEEC-CCHHHHHHHHHHHHHCC--------CCCHHHCCEEEEECCC-HHH---------HHHHHHHHHCCCEEEEE
Q ss_conf             05999955-99899999999998707--------8884557799998795-489---------99999974128729941
Q gi|254780754|r    6 QKIHFKAS-NAKKAQEAYDKFVKIYG--------NSTSEEADVIVVLGGD-GFM---------LQSFHQSKEYDKPIYGM   66 (264)
Q Consensus         6 ~ki~i~~~-~~~~a~~~~~~l~~~~~--------~~~~~~~Dlii~iGGD-GT~---------L~a~~~~~~~~~PilGI   66 (264)
                      |||++++- -+..+  ..+-|. +.+        .++.+++|.+|.=||- ++.         +.+.+.+...++|+|||
T Consensus        21 mkIgVi~~~Gn~~s--~~~aL~-~lG~~~~iv~~~~~l~~~D~lILPGG~~~~~~~~l~~~~~~~~i~~~~~~~kPiLGI   97 (208)
T 2iss_D           21 MKIGVLGVQGDVRE--HVEALH-KLGVETLIVKLPEQLDMVDGLILPGGESTTMIRILKEMDMDEKLVERINNGLPVFAT   97 (208)
T ss_dssp             CEEEEECSSSCHHH--HHHHHH-HTTCEEEEECSGGGGGGCSEEEECSSCHHHHHHHHHHTTCHHHHHHHHHTTCCEEEE
T ss_pred             CEEEEEECCCCHHH--HHHHHH-HCCCCEEEECCHHHHHCCCEEEECCCCHHHHHHHHHHCCCHHHHHHHHHCCCCEEEE
T ss_conf             78999956887999--999999-889989998998998259999999999899999999869889999999869988998


Q ss_pred             CCCC
Q ss_conf             5343
Q gi|254780754|r   67 NCGS   70 (264)
Q Consensus        67 n~G~   70 (264)
                      =.|.
T Consensus        98 ClG~  101 (208)
T 2iss_D           98 CAGV  101 (208)
T ss_dssp             THHH
T ss_pred             CCCH
T ss_conf             7241


No 43 
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C}
Probab=77.60  E-value=3.5  Score=19.91  Aligned_cols=92  Identities=17%  Similarity=0.247  Sum_probs=52.6

Q ss_pred             CCCCCEEEEEEECCCHHHHHHHHHHHHHCCC--------------CCHHHCCEEEEE------CCCHHHHHHHHHHHHCC
Q ss_conf             9876505999955998999999999987078--------------884557799998------79548999999974128
Q gi|254780754|r    1 MDRNIQKIHFKASNAKKAQEAYDKFVKIYGN--------------STSEEADVIVVL------GGDGFMLQSFHQSKEYD   60 (264)
Q Consensus         1 m~~~~~ki~i~~~~~~~a~~~~~~l~~~~~~--------------~~~~~~Dlii~i------GGDGT~L~a~~~~~~~~   60 (264)
                      |..+-+..-++.++.+...+....+.+..+-              -..+.+|++|+.      +|+|..+..........
T Consensus         1 Ms~~~~p~VLIVDDd~~~r~~l~~~L~~~g~~v~~a~~~~eal~~l~~~~~d~vilD~~l~~~~~~gl~~~~~~~~~~~~   80 (136)
T 3kto_A            1 MSLNHHPIIYLVDHQKDARAALSKLLSPLDVTIQCFASAESFMRQQISDDAIGMIIEAHLEDKKDSGIELLETLVKRGFH   80 (136)
T ss_dssp             ------CEEEEECSCHHHHHHHHHHHTTSSSEEEEESSHHHHTTSCCCTTEEEEEEETTGGGBTTHHHHHHHHHHHTTCC
T ss_pred             CCCCCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHCCCC
T ss_conf             98999977999979999999999999987999999899999999998479988999936864788408999999750268


Q ss_pred             CEEEEECC-------------CCCCCCCCCCCHHHHHHHHHHCCC
Q ss_conf             72994153-------------433201044587899986642012
Q gi|254780754|r   61 KPIYGMNC-------------GSVGFLMNEYCIENLVERLSVAVE   92 (264)
Q Consensus        61 ~PilGIn~-------------G~lGFL~~~~~~~~~~~~l~~~~~   92 (264)
                      +|++-+-.             |--+||.-++..+.+.+.+.++..
T Consensus        81 ~pvi~lt~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~l~  125 (136)
T 3kto_A           81 LPTIVMASSSDIPTAVRAMRASAADFIEKPFIEHVLVHDVQQIIN  125 (136)
T ss_dssp             CCEEEEESSCCHHHHHHHHHTTCSEEEESSBCHHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
T ss_conf             867999705999999999975994899898999999999999999


No 44 
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=77.42  E-value=3.5  Score=19.87  Aligned_cols=85  Identities=16%  Similarity=0.290  Sum_probs=47.6

Q ss_pred             CEEEEEEECCCHHHHHHHHHHHHH-CCC---CC---------HHHCCEEEE----ECCCHH-HHHHHHHHHHCCCEEEEE
Q ss_conf             505999955998999999999987-078---88---------455779999----879548-999999974128729941
Q gi|254780754|r    5 IQKIHFKASNAKKAQEAYDKFVKI-YGN---ST---------SEEADVIVV----LGGDGF-MLQSFHQSKEYDKPIYGM   66 (264)
Q Consensus         5 ~~ki~i~~~~~~~a~~~~~~l~~~-~~~---~~---------~~~~Dlii~----iGGDGT-~L~a~~~~~~~~~PilGI   66 (264)
                      |+||-++.++..-+..+...|... |..   ..         .+.+|+|+.    =|+||. +++..+.  ...+||+-+
T Consensus         1 M~rILiVDDd~~~~~~l~~~L~~~g~~v~~a~~g~~al~~l~~~~~dliilD~~mp~~dG~~~l~~~~~--~~~~pvi~l   78 (120)
T 2a9o_A            1 MKKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAEQPDIIILDLMLPEIDGLEVAKTIRK--TSSVPILML   78 (120)
T ss_dssp             -CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHHCCSEEEECSSCSSSCHHHHHHHHHH--HCCCCEEEE
T ss_pred             CCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHH--CCCCCEEEE
T ss_conf             988999979999999999999988999999899999999998579989998299999899999999886--599819999


Q ss_pred             CC-------------CCCCCCCCCCCHHHHHHHHHHCC
Q ss_conf             53-------------43320104458789998664201
Q gi|254780754|r   67 NC-------------GSVGFLMNEYCIENLVERLSVAV   91 (264)
Q Consensus        67 n~-------------G~lGFL~~~~~~~~~~~~l~~~~   91 (264)
                      ..             |--+||.-++..+++...+....
T Consensus        79 t~~~~~~~~~~a~~~Ga~d~l~KP~~~~~L~~~i~~~l  116 (120)
T 2a9o_A           79 SAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALL  116 (120)
T ss_dssp             ESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHH
T ss_pred             ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH
T ss_conf             79899999999998799899989899999999999999


No 45 
>2gru_A 2-deoxy-scyllo-inosose synthase; aminoglycoside, 2-deoxystreptamine, dehydroquinate synthase, lyase; HET: NAD EXO CAK; 2.15A {Bacillus circulans} PDB: 2d2x_A*
Probab=76.62  E-value=2.5  Score=20.78  Aligned_cols=36  Identities=14%  Similarity=0.127  Sum_probs=24.1

Q ss_pred             CCHHHCCEEEEECCCHHHHHHHHHHH---HCCCEEEEECC
Q ss_conf             88455779999879548999999974---12872994153
Q gi|254780754|r   32 STSEEADVIVVLGGDGFMLQSFHQSK---EYDKPIYGMNC   68 (264)
Q Consensus        32 ~~~~~~Dlii~iGGDGT~L~a~~~~~---~~~~PilGIn~   68 (264)
                      ...+..|++|.+|| |+.+-.+..+.   .+++|++-|=+
T Consensus        90 ~~~~r~~~iiaiGG-G~v~D~agf~As~~~RGi~~i~iPT  128 (368)
T 2gru_A           90 LGANRRTAIVAVGG-GLTGNVAGVAAGMMFRGIALIHVPT  128 (368)
T ss_dssp             TTCCTTEEEEEEES-HHHHHHHHHHHHHBTTCCEEEEEEC
T ss_pred             CCCCCCCEEEEECC-CHHHHHHHHHHHHHHCCCCEEECCC
T ss_conf             59997753899659-3155489999999618983795787


No 46 
>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A substrate tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A
Probab=76.43  E-value=2.1  Score=21.31  Aligned_cols=66  Identities=15%  Similarity=0.304  Sum_probs=38.6

Q ss_pred             CCCEEEEEEECCC--HHHHHHHHHHHHHC------C---CCCHHHCCEEEEEC-CC-HH---------HHHHHHHHHHCC
Q ss_conf             7650599995599--89999999999870------7---88845577999987-95-48---------999999974128
Q gi|254780754|r    3 RNIQKIHFKASNA--KKAQEAYDKFVKIY------G---NSTSEEADVIVVLG-GD-GF---------MLQSFHQSKEYD   60 (264)
Q Consensus         3 ~~~~ki~i~~~~~--~~a~~~~~~l~~~~------~---~~~~~~~Dlii~iG-GD-GT---------~L~a~~~~~~~~   60 (264)
                      -+|++|.|+....  -.|  +.+-|.+.-      .   ....+++|.+|.=| |- |+         +..+.+.+...+
T Consensus         2 ~~M~~I~IIDyg~GNi~S--v~~aL~~lg~~~~ii~~~~~~~i~~~d~IILPGVGsF~~~m~~L~~~~l~~~I~~~~~~~   79 (555)
T 1jvn_A            2 SHMPVVHVIDVESGNLQS--LTNAIEHLGYEVQLVKSPKDFNISGTSRLILPGVGNYGHFVDNLFNRGFEKPIREYIESG   79 (555)
T ss_dssp             CSSCEEEEECCSCSCCHH--HHHHHHHTTCEEEEESSGGGCCSTTCSCEEEEECSCHHHHHHHHHHTTCHHHHHHHHHTT
T ss_pred             CCCCEEEEEECCCCHHHH--HHHHHHHCCCCEEEEECCCHHHHHCCCEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHCC
T ss_conf             989989999799868999--999999869976999687866884599899999997799999999879699999999869


Q ss_pred             CEEEEECCCC
Q ss_conf             7299415343
Q gi|254780754|r   61 KPIYGMNCGS   70 (264)
Q Consensus        61 ~PilGIn~G~   70 (264)
                      +|+|||=+|.
T Consensus        80 ~PILGICLGm   89 (555)
T 1jvn_A           80 KPIMGIXVGL   89 (555)
T ss_dssp             CCEEEEEHHH
T ss_pred             CCEEEHHHHH
T ss_conf             9499958979


No 47 
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1
Probab=76.20  E-value=3.8  Score=19.66  Aligned_cols=87  Identities=14%  Similarity=0.206  Sum_probs=53.7

Q ss_pred             CEEEEEEECCCHHHHHHHHHHHHHCCC----------CCHHHCCEEEEE----CCCHH-HHHHHHHHHHCCCEEEEECC-
Q ss_conf             505999955998999999999987078----------884557799998----79548-99999997412872994153-
Q gi|254780754|r    5 IQKIHFKASNAKKAQEAYDKFVKIYGN----------STSEEADVIVVL----GGDGF-MLQSFHQSKEYDKPIYGMNC-   68 (264)
Q Consensus         5 ~~ki~i~~~~~~~a~~~~~~l~~~~~~----------~~~~~~Dlii~i----GGDGT-~L~a~~~~~~~~~PilGIn~-   68 (264)
                      |+||.++.++..-+..+...|......          ...+.+|+++.=    |+||. +++..+. ....+|++-+-. 
T Consensus         2 M~kILiVdDd~~~~~~l~~~L~~~g~v~~~~~~~eal~~~~~~DlvilD~~lp~~~g~~~~~~~~~-~~~~~~iiilt~~   80 (220)
T 1p2f_A            2 MWKIAVVDDDKNILKKVSEKLQQLGRVKTFLTGEDFLNDEEAFHVVVLDVMLPDYSGYEICRMIKE-TRPETWVILLTLL   80 (220)
T ss_dssp             CEEEEEECSCHHHHHHHHHHHTTTEEEEEESSHHHHHHCCSCCSEEEEESBCSSSBHHHHHHHHHH-HCTTSEEEEEESC
T ss_pred             CCEEEEEECCHHHHHHHHHHHHHCCEEEEECCHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHH-CCCCEEEEECCCC
T ss_conf             988999959899999999999869999998799999952789999999799998886023332110-2442034301223


Q ss_pred             ------------CCCCCCCCCCCHHHHHHHHHHCCC
Q ss_conf             ------------433201044587899986642012
Q gi|254780754|r   69 ------------GSVGFLMNEYCIENLVERLSVAVE   92 (264)
Q Consensus        69 ------------G~lGFL~~~~~~~~~~~~l~~~~~   92 (264)
                                  |--+|+.-+++.+++...+.....
T Consensus        81 ~~~~~~~~~~~~gaddyl~KP~~~~eL~~ri~~~l~  116 (220)
T 1p2f_A           81 SDDESVLKGFEAGADDYVTKPFNPEILLARVKRFLE  116 (220)
T ss_dssp             CSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred             CCCEEEEEEECCCCCEEEECCCCCCHHHHHHHHHHH
T ss_conf             230036754414652224357320018999999983


No 48 
>1rrm_A Lactaldehyde reductase; structural genomics, dehydrogenase, PSI, protein structure initiative; HET: APR; 1.60A {Escherichia coli} SCOP: e.22.1.2 PDB: 2bi4_A* 2bl4_A*
Probab=75.84  E-value=3.3  Score=20.08  Aligned_cols=22  Identities=23%  Similarity=0.400  Sum_probs=17.2

Q ss_pred             HHCCEEEEECCCHHHHHHHHHHH
Q ss_conf             55779999879548999999974
Q gi|254780754|r   35 EEADVIVVLGGDGFMLQSFHQSK   57 (264)
Q Consensus        35 ~~~Dlii~iGGDGT~L~a~~~~~   57 (264)
                      .++|+||.+|| |..+-+++-..
T Consensus        87 ~~~D~IiavGG-Gs~iD~aK~va  108 (386)
T 1rrm_A           87 SGADYLIAIGG-GSPQDTCKAIG  108 (386)
T ss_dssp             HTCSEEEEEES-HHHHHHHHHHH
T ss_pred             CCCCEEEECCC-CCCCHHHHHHH
T ss_conf             58887997688-64104899999


No 49 
>3fse_A Two-domain protein containing DJ-1/THIJ/PFPI- like and ferritin-like domains; YP_324989.1, structural genomics; HET: MSE CSX; 1.90A {Anabaena variabilis atcc 29413}
Probab=75.67  E-value=3.9  Score=19.57  Aligned_cols=39  Identities=21%  Similarity=0.274  Sum_probs=31.8

Q ss_pred             CHHHCCEEEEECCCHH--------HHHHHHHHHHCCCEEEEECCCCC
Q ss_conf             8455779999879548--------99999997412872994153433
Q gi|254780754|r   33 TSEEADVIVVLGGDGF--------MLQSFHQSKEYDKPIYGMNCGSV   71 (264)
Q Consensus        33 ~~~~~Dlii~iGGDGT--------~L~a~~~~~~~~~PilGIn~G~l   71 (264)
                      ..+++|++|+-||.|.        ++..++.+...++++.+|-.|..
T Consensus        70 ~~~dyDaLIIPGG~~~~~~~~d~~l~~lIr~~~~~gk~I~aIC~G~~  116 (365)
T 3fse_A           70 IASEFDAVVIPGGMAPDKMRRNPNTVRFVQEAMEQGKLVAAVCHGPQ  116 (365)
T ss_dssp             CGGGCSEEEECCBTHHHHHTTCHHHHHHHHHHHHTTCEEEEETTTHH
T ss_pred             CCCCCCEEEECCCCCHHHHCCCHHHHHHHHHHHHCCCEEEEECHHHH
T ss_conf             81248289988985576653286889999999984987988557899


No 50 
>1wl8_A GMP synthase [glutamine-hydrolyzing] subunit A; transferase, gatases, riken structural genomics/proteomics initiative, RSGI; 1.45A {Pyrococcus horikoshii} SCOP: c.23.16.1 PDB: 2d7j_A
Probab=75.54  E-value=3.4  Score=20.01  Aligned_cols=64  Identities=17%  Similarity=0.306  Sum_probs=42.6

Q ss_pred             EEEEEEECCCHHHHHHHHHHHHHCCC--------CCHH-----HCCEEEEECCCH-----HHHHHHHHHHHCCCEEEEEC
Q ss_conf             05999955998999999999987078--------8845-----577999987954-----89999999741287299415
Q gi|254780754|r    6 QKIHFKASNAKKAQEAYDKFVKIYGN--------STSE-----EADVIVVLGGDG-----FMLQSFHQSKEYDKPIYGMN   67 (264)
Q Consensus         6 ~ki~i~~~~~~~a~~~~~~l~~~~~~--------~~~~-----~~Dlii~iGGDG-----T~L~a~~~~~~~~~PilGIn   67 (264)
                      |.|.++.+...-...+.+.+.+. +.        ...+     ++|-++.-||++     ......+.....++|+|||-
T Consensus         1 mmI~iiD~g~~ft~ni~~~l~~l-G~~~~i~p~~~~~~~~~~~~~~gv~~sgg~~~~~~~~~~~~i~~~~~~~~PilGIC   79 (189)
T 1wl8_A            1 MMIVIMDNGGQYVHRIWRTLRYL-GVETKIIPNTTPLEEIKAMNPKGIIFSGGPSLENTGNCEKVLEHYDEFNVPILGIC   79 (189)
T ss_dssp             CEEEEEECSCTTHHHHHHHHHHT-TCEEEEEETTCCHHHHHHTCCSEEEECCCSCTTCCTTHHHHHHTGGGTCSCEEEET
T ss_pred             CEEEEEECCCCHHHHHHHHHHHC-CCEEEEECCCCCHHHHHHHCCCEEEECCCCCCCCCCCHHHHHHHHHHCCCCEEEEE
T ss_conf             98999979984899999999978-99289996999889998318997875899878654664999999985599689984


Q ss_pred             CCC
Q ss_conf             343
Q gi|254780754|r   68 CGS   70 (264)
Q Consensus        68 ~G~   70 (264)
                      .|.
T Consensus        80 lG~   82 (189)
T 1wl8_A           80 LGH   82 (189)
T ss_dssp             HHH
T ss_pred             HHH
T ss_conf             213


No 51 
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=75.42  E-value=4  Score=19.53  Aligned_cols=82  Identities=10%  Similarity=0.212  Sum_probs=48.2

Q ss_pred             EEEEEECCCHHHHHHHHHHHHHCCC-----CCH---------HHCCEEEEE----CCCHH-HHHHHHHHHHCCCEEEEEC
Q ss_conf             5999955998999999999987078-----884---------557799998----79548-9999999741287299415
Q gi|254780754|r    7 KIHFKASNAKKAQEAYDKFVKIYGN-----STS---------EEADVIVVL----GGDGF-MLQSFHQSKEYDKPIYGMN   67 (264)
Q Consensus         7 ki~i~~~~~~~a~~~~~~l~~~~~~-----~~~---------~~~Dlii~i----GGDGT-~L~a~~~~~~~~~PilGIn   67 (264)
                      ||-++.++..-+..+...+.. .+-     .+.         ..+|+++.=    |+||. +++..+..  ..+|++-+-
T Consensus         5 ~ILiVdDd~~~~~~l~~~L~~-~g~~v~~a~~~~~al~~l~~~~~dlii~D~~lP~~~g~e~~~~~~~~--~~~pii~lt   81 (123)
T 1xhf_A            5 HILIVEDELVTRNTLKSIFEA-EGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLLARELREQ--ANVALMFLT   81 (123)
T ss_dssp             EEEEECSCHHHHHHHHHHHHT-TTCEEEEESSHHHHHHHHHHSCCSEEEECSSCSSSCHHHHHHHHHHH--CCCEEEEEE
T ss_pred             EEEEEECCHHHHHHHHHHHHH-CCCEEEEECCHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHC--CCCCEEEEE
T ss_conf             999996999999999999998-79999998999999999970899999996899984499999999856--999789999


Q ss_pred             -------------CCCCCCCCCCCCHHHHHHHHHHCC
Q ss_conf             -------------343320104458789998664201
Q gi|254780754|r   68 -------------CGSVGFLMNEYCIENLVERLSVAV   91 (264)
Q Consensus        68 -------------~G~lGFL~~~~~~~~~~~~l~~~~   91 (264)
                                   .|--+||+-++..+++...+....
T Consensus        82 ~~~~~~~~~~a~~~Ga~d~l~KP~~~~~L~~~v~~~l  118 (123)
T 1xhf_A           82 GRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLL  118 (123)
T ss_dssp             SCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHH
T ss_pred             ECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH
T ss_conf             3599999999998498888869899999999999998


No 52 
>3efe_A THIJ/PFPI family protein; structural genomics, csgid, center for structural genomics of infectious diseases, chaperone; 2.30A {Bacillus anthracis}
Probab=73.71  E-value=2.8  Score=20.55  Aligned_cols=38  Identities=16%  Similarity=0.313  Sum_probs=30.9

Q ss_pred             HHHCCEEEEECCCHH-------HHHHHHHHHHCCCEEEEECCCCC
Q ss_conf             455779999879548-------99999997412872994153433
Q gi|254780754|r   34 SEEADVIVVLGGDGF-------MLQSFHQSKEYDKPIYGMNCGSV   71 (264)
Q Consensus        34 ~~~~Dlii~iGGDGT-------~L~a~~~~~~~~~PilGIn~G~l   71 (264)
                      +++.|++++.||++.       ++..++.+...++++.+|-+|..
T Consensus        72 ~~~~D~liipGG~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~  116 (212)
T 3efe_A           72 LESKDLLILPGGTTWSEEIHQPILERIGQALKIGTIVAAICGATD  116 (212)
T ss_dssp             CCTTCEEEECCCSCTTSGGGHHHHHHHHHHHHHTCEEEEETHHHH
T ss_pred             HHHCCEEEECCCCCHHHCCCHHHHHHHHHHHHHCCEEEEECCHHH
T ss_conf             624999998899731110699999999999880999998651569


No 53 
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=73.32  E-value=4.5  Score=19.21  Aligned_cols=87  Identities=15%  Similarity=0.251  Sum_probs=46.4

Q ss_pred             CCE-EEEEEECCCHHHHHHHHHHHHH-CCC---CC---------HHHCCEEEEE----CCCHH-HHHHHHHHHH-CCCEE
Q ss_conf             650-5999955998999999999987-078---88---------4557799998----79548-9999999741-28729
Q gi|254780754|r    4 NIQ-KIHFKASNAKKAQEAYDKFVKI-YGN---ST---------SEEADVIVVL----GGDGF-MLQSFHQSKE-YDKPI   63 (264)
Q Consensus         4 ~~~-ki~i~~~~~~~a~~~~~~l~~~-~~~---~~---------~~~~Dlii~i----GGDGT-~L~a~~~~~~-~~~Pi   63 (264)
                      .|| ||.++. +++...+..+.+.+. |..   .+         ...+|+|++=    |.||. +++.+|.... ..+||
T Consensus         2 smkprILiVD-D~~~~r~~l~~~L~~~~~v~~a~~g~eal~~l~~~~pdliilD~~mP~~dG~el~~~ir~~~~~~~iPi   80 (133)
T 3nhm_A            2 SLKPKVLIVE-NSWTMRETLRLLLSGEFDCTTAADGASGLQQALAHPPDVLISDVNMDGMDGYALCGHFRSEPTLKHIPV   80 (133)
T ss_dssp             ---CEEEEEC-SCHHHHHHHHHHHTTTSEEEEESSHHHHHHHHHHSCCSEEEECSSCSSSCHHHHHHHHHHSTTTTTCCE
T ss_pred             CCCCEEEEEE-CCHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCCCCE
T ss_conf             9999799994-989999999999978998999899999999998479999997599999999999999982888899878


Q ss_pred             EEECC------------CCCCCCCCCCCHHHHHHHHHHCC
Q ss_conf             94153------------43320104458789998664201
Q gi|254780754|r   64 YGMNC------------GSVGFLMNEYCIENLVERLSVAV   91 (264)
Q Consensus        64 lGIn~------------G~lGFL~~~~~~~~~~~~l~~~~   91 (264)
                      +-+..            |--+||+-++.++.+.+.+....
T Consensus        81 I~lT~~~~~~~~~a~~~ga~~yl~KP~~~~~L~~~i~~~l  120 (133)
T 3nhm_A           81 IFVSGYAPRTEGPADQPVPDAYLVKPVKPPVLIAQLHALL  120 (133)
T ss_dssp             EEEESCCC-----TTSCCCSEEEESSCCHHHHHHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH
T ss_conf             9970788499999987799789989999999999999999


No 54 
>2vpi_A GMP synthase; guanine monophosphate synthetase, phosphoprotein, GMP synthetase, GMP biosynthesis, glutamine amidotransferase, ligase, cytoplasm; 2.40A {Homo sapiens}
Probab=73.28  E-value=2.1  Score=21.35  Aligned_cols=65  Identities=12%  Similarity=0.206  Sum_probs=43.2

Q ss_pred             EEEEEEECCCHHHHHHHHHHHHHCC--C-----CC-----HHHCCEEEEECCCHHHHHHHH-----HHHHCCCEEEEECC
Q ss_conf             0599995599899999999998707--8-----88-----455779999879548999999-----97412872994153
Q gi|254780754|r    6 QKIHFKASNAKKAQEAYDKFVKIYG--N-----ST-----SEEADVIVVLGGDGFMLQSFH-----QSKEYDKPIYGMNC   68 (264)
Q Consensus         6 ~ki~i~~~~~~~a~~~~~~l~~~~~--~-----~~-----~~~~Dlii~iGGDGT~L~a~~-----~~~~~~~PilGIn~   68 (264)
                      +||.++..-.+.++.+++.+.+.--  +     ..     ..++|-||.-||-|.....-.     .....++|||||=.
T Consensus        25 ~~I~iiDfGsq~~~lI~R~lrelgv~~eI~p~~~~~~~i~~~~~dgIIlSgGP~~~~~~~~~~~~~~~~~~~~PILGICl  104 (218)
T 2vpi_A           25 GAVVILDAGAQYGKVIDRRVRELFVQSEIFPLETPAFAIKEQGFRAIIISGGPNSVYAEDAPWFDPAIFTIGKPVLGICY  104 (218)
T ss_dssp             TCEEEEECSTTTTHHHHHHHHHTTCCEEEECTTCCHHHHHHHTCSEEEEEC---------CCCCCGGGGTSSCCEEEETH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHCCCCEEEEHH
T ss_conf             98999989964889999998716966999889999899985398989990999970124333110999838998787179


Q ss_pred             CC
Q ss_conf             43
Q gi|254780754|r   69 GS   70 (264)
Q Consensus        69 G~   70 (264)
                      |+
T Consensus       105 G~  106 (218)
T 2vpi_A          105 GM  106 (218)
T ss_dssp             HH
T ss_pred             HH
T ss_conf             89


No 55 
>1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural genomics, JCSG, protein structure initiative, PSI; HET: NAP; 1.78A {Thermotoga maritima MSB8} SCOP: e.22.1.2
Probab=73.28  E-value=4.5  Score=19.20  Aligned_cols=63  Identities=21%  Similarity=0.356  Sum_probs=37.2

Q ss_pred             CEEEEEEECCCH-HH----HHHHHHHHHH------CCC---C-------------CHHHCCEEEEECCCHHHHHHHHHHH
Q ss_conf             505999955998-99----9999999987------078---8-------------8455779999879548999999974
Q gi|254780754|r    5 IQKIHFKASNAK-KA----QEAYDKFVKI------YGN---S-------------TSEEADVIVVLGGDGFMLQSFHQSK   57 (264)
Q Consensus         5 ~~ki~i~~~~~~-~a----~~~~~~l~~~------~~~---~-------------~~~~~Dlii~iGGDGT~L~a~~~~~   57 (264)
                      .+|+.+++++.- +.    .++.+.|.+.      |+.   +             ...++|+||.+|| |..+-+++-..
T Consensus        43 ~kkvliVt~~~~~~~~g~~~~v~~~L~~~gi~~~~f~~v~~~pt~~~v~~~~~~~~~~~~D~IIavGG-GS~iD~AKaia  121 (407)
T 1vlj_A           43 IRKVLFLYGGGSIKKNGVYDQVVDSLKKHGIEWVEVSGVKPNPVLSKVHEAVEVAKKEKVEAVLGVGG-GSVVDSAKAVA  121 (407)
T ss_dssp             CCEEEEEECSSHHHHSSHHHHHHHHHHHTTCEEEEECCCCSSCBHHHHHHHHHHHHHTTCSEEEEEES-HHHHHHHHHHH
T ss_pred             CCEEEEEECCCHHHHCCHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEECCC-CCHHHHHHHHH
T ss_conf             98589998875788752999999999865993999857079999999999999997459978995499-63415688899


Q ss_pred             H-------------------CCCEEEEECC
Q ss_conf             1-------------------2872994153
Q gi|254780754|r   58 E-------------------YDKPIYGMNC   68 (264)
Q Consensus        58 ~-------------------~~~PilGIn~   68 (264)
                      -                   ..+|++.|-+
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~lP~i~iPT  151 (407)
T 1vlj_A          122 AGALYEGDIWDAFIGKYQIEKALPIFDVLT  151 (407)
T ss_dssp             HHTTCSSCGGGGGGTSCCCCCCCCEEEEEC
T ss_pred             HHHHCCCCHHHHHCCCCCCCCCCCEEEECC
T ss_conf             987513404776336655577898667538


No 56 
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structure initiative, PSI-2; 2.00A {Colwellia psychrerythraea 34H}
Probab=72.43  E-value=4.7  Score=19.08  Aligned_cols=92  Identities=16%  Similarity=0.249  Sum_probs=52.3

Q ss_pred             CCCCCE---EEEEEECCCHHHHHHHHH-HHHHCCC------CCH---------HHCCEEEEE----CCCHH-HHHHHHHH
Q ss_conf             987650---599995599899999999-9987078------884---------557799998----79548-99999997
Q gi|254780754|r    1 MDRNIQ---KIHFKASNAKKAQEAYDK-FVKIYGN------STS---------EEADVIVVL----GGDGF-MLQSFHQS   56 (264)
Q Consensus         1 m~~~~~---ki~i~~~~~~~a~~~~~~-l~~~~~~------~~~---------~~~Dlii~i----GGDGT-~L~a~~~~   56 (264)
                      |..+++   |+.++ ++++...++... |.+....      ...         ..+|+|++=    |.||. +++.+|..
T Consensus         1 ms~~~~n~~~ILiV-DD~~~~~~~l~~~L~~~~~~~~v~~a~~g~eAl~~~~~~~pDlillD~~mP~~dG~el~~~ir~~   79 (143)
T 3cnb_A            1 MSLNVKNDFSILII-EDDKEFADMLTQFLENLFPYAKIKIAYNPFDAGDLLHTVKPDVVMLDLMMVGMDGFSICHRIKST   79 (143)
T ss_dssp             --------CEEEEE-CSCHHHHHHHHHHHHHHCTTCEEEEECSHHHHHHHHHHTCCSEEEEETTCTTSCHHHHHHHHHTS
T ss_pred             CCCCCCCCCEEEEE-ECCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHC
T ss_conf             99887899999999-19999999999999827898089998999999999972799999980888999869999999847


Q ss_pred             H-HCCCEEEEECC-------------CCCCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf             4-12872994153-------------4332010445878999866420124
Q gi|254780754|r   57 K-EYDKPIYGMNC-------------GSVGFLMNEYCIENLVERLSVAVEC   93 (264)
Q Consensus        57 ~-~~~~PilGIn~-------------G~lGFL~~~~~~~~~~~~l~~~~~~   93 (264)
                      . ..++||+-+..             |--+||+-+++.+.+.+.+.+....
T Consensus        80 ~~~~~ipvI~lt~~~~~~~~~~~~~~Ga~~yl~KP~~~~~L~~~i~~~l~~  130 (143)
T 3cnb_A           80 PATANIIVIAMTGALTDDNVSRIVALGAETCFGKPLNFTLLEKTIKQLVEQ  130 (143)
T ss_dssp             TTTTTSEEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHT
T ss_pred             CCCCCCEEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHH
T ss_conf             888998499998489989999999769989998989999999999999971


No 57 
>3crn_A Response regulator receiver domain protein, CHEY- like; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=72.33  E-value=4.7  Score=19.06  Aligned_cols=87  Identities=13%  Similarity=0.194  Sum_probs=54.2

Q ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHCCC-----CC---------HHHCCEEEE----ECCCHH-HHHHHHHHHHCCCEEE
Q ss_conf             6505999955998999999999987078-----88---------455779999----879548-9999999741287299
Q gi|254780754|r    4 NIQKIHFKASNAKKAQEAYDKFVKIYGN-----ST---------SEEADVIVV----LGGDGF-MLQSFHQSKEYDKPIY   64 (264)
Q Consensus         4 ~~~ki~i~~~~~~~a~~~~~~l~~~~~~-----~~---------~~~~Dlii~----iGGDGT-~L~a~~~~~~~~~Pil   64 (264)
                      .|+||.++.++..-...+...|.. .+.     ..         .+.+|++++    =|+||. +++.++.. ..++|++
T Consensus         2 smkrILiVDDd~~~~~~l~~~L~~-~g~~v~~a~~~~~al~~l~~~~~dlvllD~~mp~~~G~el~~~lr~~-~~~~piI   79 (132)
T 3crn_A            2 SLKRILIVDDDTAILDSTKQILEF-EGYEVEIAATAGEGLAKIENEFFNLALFXIKLPDMEGTELLEKAHKL-RPGMKKI   79 (132)
T ss_dssp             -CCEEEEECSCHHHHHHHHHHHHH-TTCEEEEESSHHHHHHHHHHSCCSEEEECSBCSSSBHHHHHHHHHHH-CTTSEEE
T ss_pred             CCCEEEEEECCHHHHHHHHHHHHH-CCCEEEECCCHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHH-CCCCCEE
T ss_conf             988899995999999999999998-69979970999999999985799999970448996089999999984-8999899


Q ss_pred             EEC-------------CCCCCCCCCCCCHHHHHHHHHHCCC
Q ss_conf             415-------------3433201044587899986642012
Q gi|254780754|r   65 GMN-------------CGSVGFLMNEYCIENLVERLSVAVE   92 (264)
Q Consensus        65 GIn-------------~G~lGFL~~~~~~~~~~~~l~~~~~   92 (264)
                      -+-             .|--+||.-+++++++.+.+.+...
T Consensus        80 ~lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~L~  120 (132)
T 3crn_A           80 MVTGYASLENSVFSLNAGADAYIMKPVNPRDLLEKIKEKLD  120 (132)
T ss_dssp             EEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred             EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
T ss_conf             99765999999999987998999897999999999999999


No 58 
>2o6l_A UDP-glucuronosyltransferase 2B7; drug metabolism, rossman, MAD, enzyme, nucleotide binding, sugar,UDP-glucuronosyltransferase, UGT; 1.80A {Homo sapiens}
Probab=72.17  E-value=2.2  Score=21.17  Aligned_cols=25  Identities=4%  Similarity=-0.055  Sum_probs=21.4

Q ss_pred             ECCEEEEECCCCHHHHHHHCCCEEE
Q ss_conf             0350798226650446752298177
Q gi|254780754|r  151 VCDGLVVSTPIGSTAYNFSALGPIL  175 (264)
Q Consensus       151 ~~DGvivSTptGSTAY~lSaGGpIv  175 (264)
                      ++|.+|---..||+.-++.+|=|.+
T Consensus        86 ~~~~~I~HGG~~t~~eal~~GvP~l  110 (170)
T 2o6l_A           86 KTRAFITHGGANGIYEAIYHGIPMV  110 (170)
T ss_dssp             TEEEEEECCCHHHHHHHHHHTCCEE
T ss_pred             CCEEEEECCCCHHHHHHHHCCCCEE
T ss_conf             5018986277302436774277878


No 59 
>1kq3_A Glycerol dehydrogenase; structural genomics, joint center FO structural genomics, JCSG, protein structure initiative, PS oxidoreductase; 1.50A {Thermotoga maritima} SCOP: e.22.1.2
Probab=71.82  E-value=4.9  Score=18.99  Aligned_cols=33  Identities=33%  Similarity=0.517  Sum_probs=27.2

Q ss_pred             HHCCEEEEECCCHHHHHHHHHHH-HCCCEEEEECC
Q ss_conf             55779999879548999999974-12872994153
Q gi|254780754|r   35 EEADVIVVLGGDGFMLQSFHQSK-EYDKPIYGMNC   68 (264)
Q Consensus        35 ~~~Dlii~iGGDGT~L~a~~~~~-~~~~PilGIn~   68 (264)
                      +++|+||.+|| |+.+-+++... ....|++.|-+
T Consensus        93 ~~~D~IIavGG-Gs~iD~aK~ia~~~~~Pli~IPT  126 (376)
T 1kq3_A           93 EETDVVVGIGG-GKTLDTAKAVAYKLKKPVVIVPT  126 (376)
T ss_dssp             TTCCEEEEEES-HHHHHHHHHHHHHTTCCEEEEES
T ss_pred             HCCCEEEEECC-CHHHHHHHHHHHCCCCCCEEECC
T ss_conf             09998999678-52112018888424798357567


No 60 
>2vrn_A Protease I, DR1199; cysteine sulfenic acid, DJ-1/THIJ/PFPI superfamily, hydrolase, stress response; 2.15A {Deinococcus radiodurans}
Probab=71.81  E-value=4.9  Score=18.99  Aligned_cols=39  Identities=18%  Similarity=0.227  Sum_probs=30.8

Q ss_pred             CHHHCCEEEEECCCH---------HHHHHHHHHHHCCCEEEEECCCCC
Q ss_conf             845577999987954---------899999997412872994153433
Q gi|254780754|r   33 TSEEADVIVVLGGDG---------FMLQSFHQSKEYDKPIYGMNCGSV   71 (264)
Q Consensus        33 ~~~~~Dlii~iGGDG---------T~L~a~~~~~~~~~PilGIn~G~l   71 (264)
                      .++++|.+++-||-+         .++..++.+...++||.+|-.|..
T Consensus        72 ~~~~yDaliipGG~~~~~~l~~~~~l~~~l~~~~~~~k~i~aiC~G~~  119 (190)
T 2vrn_A           72 QVSDYDGLLLPGGTVNPDKLRLEEGAMKFVRDMYDAGKPIAAICHGPW  119 (190)
T ss_dssp             CGGGCSEEEECCCTHHHHHHTTCHHHHHHHHHHHHTTCCEEEC-CTTH
T ss_pred             CHHHCEEEEECCCCCCHHHHCCCHHHHHHHHHHHHCCCCCCCCCHHHH
T ss_conf             974764999268776221210288999999998752774003342899


No 61 
>1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan biosynthesis, glutamine amidotransferase, allosteric interaction, lyase; 2.50A {Sulfolobus solfataricus} SCOP: c.23.16.1
Probab=71.47  E-value=5  Score=18.94  Aligned_cols=65  Identities=12%  Similarity=0.125  Sum_probs=37.9

Q ss_pred             CEEEEEEECCCHHHHHHHHHHHHHCCC---------CCHH-----HCCEEEEECCCHHH--------HHHHHHHHHCCCE
Q ss_conf             505999955998999999999987078---------8845-----57799998795489--------9999997412872
Q gi|254780754|r    5 IQKIHFKASNAKKAQEAYDKFVKIYGN---------STSE-----EADVIVVLGGDGFM--------LQSFHQSKEYDKP   62 (264)
Q Consensus         5 ~~ki~i~~~~~~~a~~~~~~l~~~~~~---------~~~~-----~~Dlii~iGGDGT~--------L~a~~~~~~~~~P   62 (264)
                      |+.+-++.+-..=...+...|.+ ++.         ...+     ++|.++.-||.|.-        ......+...++|
T Consensus         1 ~~~~liiD~~dsft~Nl~~~l~~-lG~~~~v~~~d~~~~~~~~~~~~~gvilsgGp~~p~~~~~~~~~~~i~~~~~~~~P   79 (195)
T 1qdl_B            1 MDLTLIIDNYDSFVYNIAQIVGE-LGSYPIVIRNDEISIKGIERIDPDRLIISPGPGTPEKREDIGVSLDVIKYLGKRTP   79 (195)
T ss_dssp             CCEEEEEECSCSSHHHHHHHHHH-TTCEEEEEETTTSCHHHHHHHCCSEEEECCCSSCTTSHHHHTTHHHHHHHHTTTSC
T ss_pred             CCEEEEEECCCCHHHHHHHHHHH-CCCEEEEEECCCCCHHHHHHCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHCCCCC
T ss_conf             98899997887179999999986-89927998089899999986198979988999974334334430899998558998


Q ss_pred             EEEECCCC
Q ss_conf             99415343
Q gi|254780754|r   63 IYGMNCGS   70 (264)
Q Consensus        63 ilGIn~G~   70 (264)
                      +|||-.|+
T Consensus        80 iLGIClG~   87 (195)
T 1qdl_B           80 ILGVCLGH   87 (195)
T ss_dssp             EEEETHHH
T ss_pred             EEEECHHH
T ss_conf             89982607


No 62 
>3jzd_A Iron-containing alcohol dehydrogenase; YP_298327.1, putative alcohol dehedrogenase, structural genomics; HET: MSE NAD PG4 P6G PGE; 2.10A {Ralstonia eutropha JMP134}
Probab=71.23  E-value=3.2  Score=20.11  Aligned_cols=33  Identities=27%  Similarity=0.287  Sum_probs=26.6

Q ss_pred             HHCCEEEEECCCHHHHHHHHHHH-HCCCEEEEECC
Q ss_conf             55779999879548999999974-12872994153
Q gi|254780754|r   35 EEADVIVVLGGDGFMLQSFHQSK-EYDKPIYGMNC   68 (264)
Q Consensus        35 ~~~Dlii~iGGDGT~L~a~~~~~-~~~~PilGIn~   68 (264)
                      .++|+||.+|| |..+-+++... ...+|++.|-+
T Consensus        88 ~~~D~IiavGG-Gs~iD~aK~ia~~~~~P~i~vPT  121 (358)
T 3jzd_A           88 AGADCAVAVGG-GSTTGLGKAIALETGMPIVAIPT  121 (358)
T ss_dssp             HTCSEEEEEES-HHHHHHHHHHHHHHCCCEEEEEC
T ss_pred             CCCCEEEEECC-CCCCCCCCCEEEECCCCEECCCC
T ss_conf             49998999688-45456541125404586412565


No 63 
>3iv7_A Alcohol dehydrogenase IV; NP_602249.1, iron-containing alcohol dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}
Probab=70.96  E-value=3.1  Score=20.21  Aligned_cols=33  Identities=24%  Similarity=0.384  Sum_probs=25.5

Q ss_pred             HHCCEEEEECCCHHHHHHHHHHH-HCCCEEEEECC
Q ss_conf             55779999879548999999974-12872994153
Q gi|254780754|r   35 EEADVIVVLGGDGFMLQSFHQSK-EYDKPIYGMNC   68 (264)
Q Consensus        35 ~~~Dlii~iGGDGT~L~a~~~~~-~~~~PilGIn~   68 (264)
                      +++|+||.+|| |..+-+++... ....|++-|-+
T Consensus        87 ~~~D~IiavGG-GsviD~aK~ia~~~~~P~i~iPT  120 (364)
T 3iv7_A           87 NEIDLLVCVGG-GSTIGLAKAIAMTTALPIVAIPT  120 (364)
T ss_dssp             TTCCEEEEEES-HHHHHHHHHHHHHHCCCEEEEEC
T ss_pred             CCCCEEEEECC-CHHHHHHHHHEECCCCCEEEECC
T ss_conf             59998999458-16754214211116798788537


No 64 
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora}
Probab=70.22  E-value=5.3  Score=18.76  Aligned_cols=33  Identities=15%  Similarity=0.229  Sum_probs=16.7

Q ss_pred             HHCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf             55779999879548999999974128729941534
Q gi|254780754|r   35 EEADVIVVLGGDGFMLQSFHQSKEYDKPIYGMNCG   69 (264)
Q Consensus        35 ~~~Dlii~iGGDGT~L~a~~~~~~~~~PilGIn~G   69 (264)
                      ..+|++++-...  ..-+...+...++|.+.+...
T Consensus       101 ~~pD~vi~d~~~--~~~~~~~a~~~~~P~v~~~~~  133 (402)
T 3ia7_A          101 NPPDLVVYDVFP--FIAGRLLAARWDRPAVRLTGG  133 (402)
T ss_dssp             CCCSEEEEESTT--HHHHHHHHHHHTCCEEEEESS
T ss_pred             CCCCEEEECCCC--HHHHHHHHHHHCCCEEEEEEC
T ss_conf             498689626740--027999999808987999722


No 65 
>3cg0_A Response regulator receiver modulated diguanylate cyclase with PAS/PAC sensor; signal receiver domain; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=70.13  E-value=5.3  Score=18.75  Aligned_cols=87  Identities=15%  Similarity=0.272  Sum_probs=51.6

Q ss_pred             CCCEEEEEEECCCHHHHHHHHHHHHHCCC------CCH---------HHCCEEEEE----CC-CH-HHHHHHHHHHHCCC
Q ss_conf             76505999955998999999999987078------884---------557799998----79-54-89999999741287
Q gi|254780754|r    3 RNIQKIHFKASNAKKAQEAYDKFVKIYGN------STS---------EEADVIVVL----GG-DG-FMLQSFHQSKEYDK   61 (264)
Q Consensus         3 ~~~~ki~i~~~~~~~a~~~~~~l~~~~~~------~~~---------~~~Dlii~i----GG-DG-T~L~a~~~~~~~~~   61 (264)
                      .++.+|.++. +.+...+..+.+.+.++-      ...         +.+|++++-    +| || .+++..+.  ..++
T Consensus         7 ~~~~~ILvVD-D~~~~~~~l~~~L~~~G~~v~~~a~~~~eal~~~~~~~~dlvi~D~~mp~~~dG~~l~~~lr~--~~~~   83 (140)
T 3cg0_A            7 DDLPGVLIVE-DGRLAAATLRIQLESLGYDVLGVFDNGEEAVRCAPDLRPDIALVDIMLCGALDGVETAARLAA--GCNL   83 (140)
T ss_dssp             -CCCEEEEEC-CBHHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHCCSEEEEESSCCSSSCHHHHHHHHHH--HSCC
T ss_pred             CCCCEEEEEE-CCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHH--CCCC
T ss_conf             9999899997-999999999999998799899997899999999982799889997678767989999999985--7999


Q ss_pred             EEEEECC-------------CCCCCCCCCCCHHHHHHHHHHCCC
Q ss_conf             2994153-------------433201044587899986642012
Q gi|254780754|r   62 PIYGMNC-------------GSVGFLMNEYCIENLVERLSVAVE   92 (264)
Q Consensus        62 PilGIn~-------------G~lGFL~~~~~~~~~~~~l~~~~~   92 (264)
                      |++-+..             |--+||.-++..+.+...+..+..
T Consensus        84 piI~lt~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~l~  127 (140)
T 3cg0_A           84 PIIFITSSQDVETFQRAKRVNPFGYLAKPVAADTLHRSIEMAIH  127 (140)
T ss_dssp             CEEEEECCCCHHHHHHHHTTCCSEEEEESCCHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
T ss_conf             68999668999999999987999899798999999999999999


No 66 
>3cne_A Putative protease I; structural genomics, PSI-2, MCSG, protein structure initiative, midwest center for structural genomics; HET: FMN; 1.99A {Bacteroides thetaiotaomicron vpi-5482}
Probab=69.08  E-value=5.6  Score=18.61  Aligned_cols=37  Identities=24%  Similarity=0.347  Sum_probs=30.8

Q ss_pred             HHHCCEEEEECCCH--------------HHHHHHHHHHHCCCEEEEECCCC
Q ss_conf             45577999987954--------------89999999741287299415343
Q gi|254780754|r   34 SEEADVIVVLGGDG--------------FMLQSFHQSKEYDKPIYGMNCGS   70 (264)
Q Consensus        34 ~~~~Dlii~iGGDG--------------T~L~a~~~~~~~~~PilGIn~G~   70 (264)
                      .+++|.+|.-||++              .++..++.+...++++.+|-.|.
T Consensus        64 ~~~~D~liipGG~~~~~~~~~~~~~~~~~l~~~l~~~~~~g~~i~aiC~g~  114 (175)
T 3cne_A           64 EDEFDALVFSCGDAVPVFQQYANQPYNVDLMEVIKTFGEKGKMMIGHCAGA  114 (175)
T ss_dssp             GGGCSEEEEECCTTGGGGGGCTTCHHHHHHHHHHHHHHHTTCEEEEETTHH
T ss_pred             CCCCCEEEECCCCCCHHCCCCCCCCCCHHHHHHHHHHHHCCCEEEEECCHH
T ss_conf             567788999997770122655444369999999999998499899988205


No 67 
>1ydh_A AT5G11950; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 2.15A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4d_A
Probab=68.78  E-value=5.3  Score=18.78  Aligned_cols=63  Identities=16%  Similarity=0.103  Sum_probs=37.8

Q ss_pred             CCCCEEEEEEECCC----HHHHHHHHHHHHHCCCCCHHHCCEEEEE-CCC-HHHHHHHHHHHHCCCEEEEECCC
Q ss_conf             87650599995599----8999999999987078884557799998-795-48999999974128729941534
Q gi|254780754|r    2 DRNIQKIHFKASNA----KKAQEAYDKFVKIYGNSTSEEADVIVVL-GGD-GFMLQSFHQSKEYDKPIYGMNCG   69 (264)
Q Consensus         2 ~~~~~ki~i~~~~~----~~a~~~~~~l~~~~~~~~~~~~Dlii~i-GGD-GT~L~a~~~~~~~~~PilGIn~G   69 (264)
                      -.+|+|+.++.+..    +.-.+.++++-+.+..     -.+-++. ||. |.|=.+++-+...+-.++||...
T Consensus         6 ~~k~k~V~VF~gS~~~~~~~~~~~a~~lG~~La~-----~g~~lV~GGG~~GlMgava~ga~~~gG~viGV~~~   74 (216)
T 1ydh_A            6 RSRFRKICVFCGSHSGHREVFSDAAIELGNELVK-----RKIDLVYGGGSVGLMGLISRRVYEGGLHVLGIIPK   74 (216)
T ss_dssp             CCSCSEEEEECCSCCCSSHHHHHHHHHHHHHHHH-----TTCEEEECCCSSHHHHHHHHHHHHTTCCEEEEEEG
T ss_pred             CCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHH-----CCCEEEECCCCHHHHHHHHHHHHHCCCCEEEECCH
T ss_conf             0568539998757899693899999999999998-----79949989981899999998787479955763502


No 68 
>3okf_A 3-dehydroquinate synthase; structural genomics, center for structural genomics of infec diseases, csgid, NAD, lyase; HET: NAD; 2.50A {Vibrio cholerae o1 biovar eltor}
Probab=68.74  E-value=4.8  Score=19.05  Aligned_cols=36  Identities=14%  Similarity=0.197  Sum_probs=24.5

Q ss_pred             CCHHHCCEEEEECCCHHHHHHHHHHH---HCCCEEEEECC
Q ss_conf             88455779999879548999999974---12872994153
Q gi|254780754|r   32 STSEEADVIVVLGGDGFMLQSFHQSK---EYDKPIYGMNC   68 (264)
Q Consensus        32 ~~~~~~Dlii~iGGDGT~L~a~~~~~---~~~~PilGIn~   68 (264)
                      ...+..|+++++|| |...-.+..+.   ..++|++-|-+
T Consensus       119 ~~~~r~~~viaiGG-G~v~DlagfvAs~y~RGi~~i~iPT  157 (390)
T 3okf_A          119 HNYSRDVVVIALGG-GVIGDLVGFAAACYQRGVDFIQIPT  157 (390)
T ss_dssp             TTCCTTCEEEEEES-HHHHHHHHHHHHHBTTCCEEEEEEC
T ss_pred             HCCCCCCEEEEECC-CCCHHHHHHHHHHHHCCCCEEECCC
T ss_conf             22687713797179-7203188999999828975564043


No 69 
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=67.88  E-value=5.9  Score=18.46  Aligned_cols=84  Identities=12%  Similarity=0.263  Sum_probs=42.2

Q ss_pred             CEEEEEEECCCHHHHHHHHHHHHHCCC-----CC---------HHHCCEEEE----ECCCHH-HHHHHHHHHHCCCEEEE
Q ss_conf             505999955998999999999987078-----88---------455779999----879548-99999997412872994
Q gi|254780754|r    5 IQKIHFKASNAKKAQEAYDKFVKIYGN-----ST---------SEEADVIVV----LGGDGF-MLQSFHQSKEYDKPIYG   65 (264)
Q Consensus         5 ~~ki~i~~~~~~~a~~~~~~l~~~~~~-----~~---------~~~~Dlii~----iGGDGT-~L~a~~~~~~~~~PilG   65 (264)
                      |+||.++.++..-.+.+...|.+ .+-     .+         ...+|++++    =|.||. +++.+|.. ...+||+-
T Consensus         1 M~rILiVDDd~~~~~~l~~~L~~-~g~~v~~a~~g~~al~~~~~~~~dlvilD~~mP~~~G~e~~~~ir~~-~~~~pii~   78 (116)
T 3a10_A            1 MKRILVVDDEPNIRELLKEELQE-EGYEIDTAENGEEALKKFFSGNYDLVILDIEMPGISGLEVAGEIRKK-KKDAKIIL   78 (116)
T ss_dssp             CCEEEEECSCHHHHHHHHHHHHH-TTCEEEEESSHHHHHHHHHHSCCSEEEECSCCSSSCHHHHHHHHHHH-CTTCCEEE
T ss_pred             CCEEEEEECCHHHHHHHHHHHHH-CCCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHC-CCCCCEEE
T ss_conf             98899992999999999999998-79999998999999999984799989983688999999999999843-99897999


Q ss_pred             ECC-----------CCCCCCCCCCCHHHHHHHHHHC
Q ss_conf             153-----------4332010445878999866420
Q gi|254780754|r   66 MNC-----------GSVGFLMNEYCIENLVERLSVA   90 (264)
Q Consensus        66 In~-----------G~lGFL~~~~~~~~~~~~l~~~   90 (264)
                      +..           |--+||.-++..+++.+.+.++
T Consensus        79 lt~~~~~~~~~~~~Ga~~~l~KP~~~~~L~~~v~~~  114 (116)
T 3a10_A           79 LTAYSHYRSDMSSWAADEYVVKSFNFDELKEKVKKL  114 (116)
T ss_dssp             EESCGGGGGCGGGGGSSEEEECCSSTHHHHHHHHHH
T ss_pred             EECCCCHHHHHHHCCCCEEEECCCCHHHHHHHHHHH
T ss_conf             989789999998269988998989999999999997


No 70 
>1sg6_A Pentafunctional AROM polypeptide; shikimate pathway, aromatic amino acid biosynthesis, DHQS, open form, form J, domain movement, cyclase; HET: NAD; 1.70A {Emericella nidulans} SCOP: e.22.1.1 PDB: 1nr5_A* 1nrx_A* 1nua_A 1nva_A* 1nvb_A* 1nvd_A* 1nve_A* 1nvf_A* 1dqs_A*
Probab=66.55  E-value=6.3  Score=18.29  Aligned_cols=34  Identities=15%  Similarity=0.133  Sum_probs=24.5

Q ss_pred             HHHCCEEEEECCCHHHHHHHHHHH---HCCCEEEEECC
Q ss_conf             455779999879548999999974---12872994153
Q gi|254780754|r   34 SEEADVIVVLGGDGFMLQSFHQSK---EYDKPIYGMNC   68 (264)
Q Consensus        34 ~~~~Dlii~iGGDGT~L~a~~~~~---~~~~PilGIn~   68 (264)
                      ....|++|.+|| |+++-.+....   ..++|++-|=+
T Consensus       103 ~~r~d~iIaiGG-G~v~D~ak~~A~~y~rgi~~i~vPT  139 (393)
T 1sg6_A          103 CGRDTVVIALGG-GVIGDLTGFVASTYMRGVRYVQVPT  139 (393)
T ss_dssp             CCTTCEEEEEES-HHHHHHHHHHHHHGGGCCEEEEEEC
T ss_pred             CCCCCEEEEECC-CCHHHHHHHHHHHHHCCCCEEEECC
T ss_conf             788766999558-5032456777777626874354214


No 71 
>1s3l_A Hypothetical protein MJ0936; phosphodiesterase, nuclease, structural genomics, BSGC structure funded by NIH; 2.40A {Methanocaldococcus jannaschii} SCOP: d.159.1.7 PDB: 1s3m_A 1s3n_A 2ahd_A
Probab=66.00  E-value=6.4  Score=18.23  Aligned_cols=59  Identities=17%  Similarity=0.253  Sum_probs=35.8

Q ss_pred             CCCEEEEEEECCCHH--H-HHHHHHHHHHCCCCCHHHCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf             765059999559989--9-9999999987078884557799998795489999999741287299415343
Q gi|254780754|r    3 RNIQKIHFKASNAKK--A-QEAYDKFVKIYGNSTSEEADVIVVLGGDGFMLQSFHQSKEYDKPIYGMNCGS   70 (264)
Q Consensus         3 ~~~~ki~i~~~~~~~--a-~~~~~~l~~~~~~~~~~~~Dlii~iGGDGT~L~a~~~~~~~~~PilGIn~G~   70 (264)
                      +-.|||+++++-.-.  + +++++.+.+       +++|.++..| |-.--.....+.....|++.|. |+
T Consensus        23 ~~~MKI~iiSDiHgn~~ale~vl~~~~~-------~~~D~vi~lG-Div~~~~~~~l~~~~~~~~~V~-GN   84 (190)
T 1s3l_A           23 QGHMKIGIMSDTHDHLPNIRKAIEIFND-------ENVETVIHCG-DFVSLFVIKEFENLNANIIATY-GN   84 (190)
T ss_dssp             ---CEEEEECCCTTCHHHHHHHHHHHHH-------SCCSEEEECS-CCCSTHHHHHGGGCSSEEEEEC-CT
T ss_pred             CCCCEEEEEECCCCCHHHHHHHHHHHHH-------CCCCEEEECC-CCCCHHHHHHHHHCCCCEEEEE-CC
T ss_conf             6875899998089996999999999975-------5999999878-8389899999873476089972-76


No 72 
>1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2 PDB: 1vhd_A*
Probab=65.13  E-value=5.7  Score=18.54  Aligned_cols=32  Identities=22%  Similarity=0.249  Sum_probs=22.8

Q ss_pred             HCCEEEEECCCHHHHHHHHHHH-------------------HCCCEEEEECC
Q ss_conf             5779999879548999999974-------------------12872994153
Q gi|254780754|r   36 EADVIVVLGGDGFMLQSFHQSK-------------------EYDKPIYGMNC   68 (264)
Q Consensus        36 ~~Dlii~iGGDGT~L~a~~~~~-------------------~~~~PilGIn~   68 (264)
                      ++|+||.+|| |+.+-+++...                   ...+|++.|-+
T Consensus        98 ~~D~IvavGG-Gs~iD~aK~va~~~~~~~~~~~~~~~~~~~~~~~p~i~IPT  148 (371)
T 1o2d_A           98 SFDFVVGLGG-GSPMDFAKAVAVLLKEKDLSVEDLYDREKVKHWLPVVEIPT  148 (371)
T ss_dssp             CCSEEEEEES-HHHHHHHHHHHHHTTSTTCCSGGGGCGGGCCCCCCEEEEEC
T ss_pred             CCCEEEEECC-CCCCHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCEEEECC
T ss_conf             9988998289-76120899999998579971443057655346788688237


No 73 
>3mgk_A Intracellular protease/amidase related enzyme (THIJ family); amidotranferase-like, structural genomics, PSI; 2.00A {Clostridium acetobutylicum}
Probab=64.97  E-value=4.6  Score=19.17  Aligned_cols=38  Identities=21%  Similarity=0.304  Sum_probs=29.8

Q ss_pred             CHHHCCEEEEECCCHH--------HHHHHHHHHHCCCEEEEECCCC
Q ss_conf             8455779999879548--------9999999741287299415343
Q gi|254780754|r   33 TSEEADVIVVLGGDGF--------MLQSFHQSKEYDKPIYGMNCGS   70 (264)
Q Consensus        33 ~~~~~Dlii~iGGDGT--------~L~a~~~~~~~~~PilGIn~G~   70 (264)
                      +.+.+|++++.||.|.        ++..++.+.....++.+|-+|.
T Consensus        62 d~~~~D~livpGG~~~~~~~~~~~l~~~Lr~~~~~~~~i~aic~G~  107 (211)
T 3mgk_A           62 DENIEKILFVPGGSGTREKVNDDNFINFIGNMVKESKYIISVCTGS  107 (211)
T ss_dssp             CSSSEEEEEECCSTHHHHHTTCHHHHHHHHHHHHHCSEEEECTTHH
T ss_pred             CCCCCCEEEECCCCCHHHHCCCHHHHHHHHHHHHHCCEEEECCHHH
T ss_conf             3562799998788774544389999999998875245885001035


No 74 
>2ab0_A YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase fold, unknown function; 1.10A {Escherichia coli} SCOP: c.23.16.2
Probab=64.74  E-value=6.4  Score=18.25  Aligned_cols=36  Identities=22%  Similarity=0.345  Sum_probs=29.5

Q ss_pred             HHCCEEEEECCCH---------HHHHHHHHHHHCCCEEEEECCCC
Q ss_conf             5577999987954---------89999999741287299415343
Q gi|254780754|r   35 EEADVIVVLGGDG---------FMLQSFHQSKEYDKPIYGMNCGS   70 (264)
Q Consensus        35 ~~~Dlii~iGGDG---------T~L~a~~~~~~~~~PilGIn~G~   70 (264)
                      +++|++++-||.+         .++..++.+...++++.+|-+|-
T Consensus        65 ~d~D~liiPGG~~~~~~l~~~~~l~~~lr~~~~~gk~i~aiC~gp  109 (205)
T 2ab0_A           65 GEYDVIVLPGGIKGAECFRDSTLLVETVKQFHRSGRIVAAICAAP  109 (205)
T ss_dssp             SCCSEEEECCCHHHHHHHHHCHHHHHHHHHHHHTTCEEEEETHHH
T ss_pred             CCCCEEEECCCCHHHHHHHHCHHHHHHHHHHHHHCCEEEECCCCH
T ss_conf             687389989997179886129999999999987353045014618


No 75 
>3hbf_A Flavonoid 3-O-glucosyltransferase; glycosyltransferase, GT-B fold, GT1, phenylpropanoid metabolism; HET: UDP MYC; 2.10A {Medicago truncatula} PDB: 3hbj_A*
Probab=64.56  E-value=3.9  Score=19.58  Aligned_cols=28  Identities=11%  Similarity=-0.123  Sum_probs=10.8

Q ss_pred             HCCEEEEECCCHHHHHHHHHHHHCCCEEEEE
Q ss_conf             5779999879548999999974128729941
Q gi|254780754|r   36 EADVIVVLGGDGFMLQSFHQSKEYDKPIYGM   66 (264)
Q Consensus        36 ~~Dlii~iGGDGT~L~a~~~~~~~~~PilGI   66 (264)
                      ..|+++.-.=..-.+..++   ..++|.+..
T Consensus       117 ~~d~vi~d~~~~~~~~~a~---~~~~p~~~~  144 (454)
T 3hbf_A          117 NITCLVTDAFFWFGADLAE---EMHAKWVPL  144 (454)
T ss_dssp             CCCEEEEETTCTTHHHHHH---HTTCEEEEE
T ss_pred             CCEEEEECCCCHHHHHHHH---HHCCCEEEE
T ss_conf             9759997473168999999---968985997


No 76 
>3ce9_A Glycerol dehydrogenase; NP_348253.1, 3-dehydroquinate synthase, structural genomics, joint center for structural genomics; HET: MSE; 2.37A {Clostridium acetobutylicum atcc 824}
Probab=64.52  E-value=6.9  Score=18.05  Aligned_cols=64  Identities=13%  Similarity=0.204  Sum_probs=38.7

Q ss_pred             CCEEEEEEECCCHHH---HHHHHHHHHHC------C---C-----------CCHHHCCEEEEECCCHHHHHHHHHHH-HC
Q ss_conf             650599995599899---99999999870------7---8-----------88455779999879548999999974-12
Q gi|254780754|r    4 NIQKIHFKASNAKKA---QEAYDKFVKIY------G---N-----------STSEEADVIVVLGGDGFMLQSFHQSK-EY   59 (264)
Q Consensus         4 ~~~ki~i~~~~~~~a---~~~~~~l~~~~------~---~-----------~~~~~~Dlii~iGGDGT~L~a~~~~~-~~   59 (264)
                      ..+|+.+++++.-..   .++.+.|.+..      .   +           ...+++|+||.+|| |..+-+++... ..
T Consensus        33 g~~k~liVtd~~~~~~~~~~v~~~L~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~D~IIavGG-Gsv~D~aK~vA~~~  111 (354)
T 3ce9_A           33 NFKRVSLYFGEGIYELFGETIEKSIKSSNIEIEAVETVKNIDFDEIGTNAFKIPAEVDALIGIGG-GKAIDAVKYMAFLR  111 (354)
T ss_dssp             TCSEEEEEEETTHHHHHHHHHHHHHHTTTCEEEEEEEECCCBHHHHHHHHTTSCTTCCEEEEEES-HHHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECC-CCCCCCHHHHHHHC
T ss_conf             98959999896788999999999998779989998589999989999999986526888999469-74221036899861


Q ss_pred             CCEEEEECC
Q ss_conf             872994153
Q gi|254780754|r   60 DKPIYGMNC   68 (264)
Q Consensus        60 ~~PilGIn~   68 (264)
                      ++|++.|-+
T Consensus       112 ~ip~i~VPT  120 (354)
T 3ce9_A          112 KLPFISVPT  120 (354)
T ss_dssp             TCCEEEEES
T ss_pred             CCEEEEECC
T ss_conf             880578546


No 77 
>2jzc_A UDP-N-acetylglucosamine transferase subunit ALG13; rossmann-like fold, endoplasmic reticulum, glycosyltransferase, structural genomics; NMR {Saccharomyces cerevisiae}
Probab=63.66  E-value=2.6  Score=20.69  Aligned_cols=28  Identities=14%  Similarity=0.178  Sum_probs=17.6

Q ss_pred             ECCEEEEECCCCHHHHHHHCCCEE-EEEC
Q ss_conf             035079822665044675229817-7408
Q gi|254780754|r  151 VCDGLVVSTPIGSTAYNFSALGPI-LPLE  178 (264)
Q Consensus       151 ~~DGvivSTptGSTAY~lSaGGpI-v~p~  178 (264)
                      ++|=||---.+||..=.+.+|=|+ +-|+
T Consensus       132 ~adlvIshaG~gti~e~l~~~kp~i~vP~  160 (224)
T 2jzc_A          132 YSDLVISHAGTGSILDSLRLNKPLIVCVN  160 (224)
T ss_dssp             HCSCEEESSCHHHHHHHHHTTCCCCEECC
T ss_pred             HCCEEEECCCHHHHHHHHHHCCCEEEEEC
T ss_conf             23688856864799999996899899837


No 78 
>2nv0_A Glutamine amidotransferase subunit PDXT; 3-layer(ABA) sandwich, rossmann fold, glutaminase; 1.73A {Bacillus subtilis} SCOP: c.23.16.1 PDB: 1r9g_A 2nv2_B*
Probab=63.43  E-value=7.2  Score=17.92  Aligned_cols=66  Identities=17%  Similarity=0.264  Sum_probs=38.3

Q ss_pred             CEEEEEEEC-CCH-HHHHHHHHHHHH----CCCCCHHHCCEEEEECCCHH----------HHHHHHHHHHCCCEEEEECC
Q ss_conf             505999955-998-999999999987----07888455779999879548----------99999997412872994153
Q gi|254780754|r    5 IQKIHFKAS-NAK-KAQEAYDKFVKI----YGNSTSEEADVIVVLGGDGF----------MLQSFHQSKEYDKPIYGMNC   68 (264)
Q Consensus         5 ~~ki~i~~~-~~~-~a~~~~~~l~~~----~~~~~~~~~Dlii~iGGDGT----------~L~a~~~~~~~~~PilGIn~   68 (264)
                      |+||++++- -+. +..+.++++-..    -..++.+++|.+|.=||-.+          +....+.+...++|+|||=.
T Consensus         1 m~kIGvl~~~Gn~~s~~~al~~~g~~~~~i~~~~~l~~~d~lIlPGg~~~~~~~~~~~~~~~~~i~~~~~~g~pilGICl   80 (196)
T 2nv0_A            1 MLTIGVLGLQGAVREHIHAIEACGAAGLVVKRPEQLNEVDGLILPGGESTTMRRLIDTYQFMEPLREFAAQGKPMFGTCA   80 (196)
T ss_dssp             CCEEEEECSSSCCHHHHHHHHHTTCEEEEECSGGGGGGCSEEEECCSCHHHHHHHHHHTTCHHHHHHHHHTTCCEEEETH
T ss_pred             CCEEEEEECCCCHHHHHHHHHHCCCCEEEECCHHHHHCCCEEEECCCCCHHHHHHHHHCCCHHHHHHHHHCCCCEEEECH
T ss_conf             94999994588299999999988992999999899825998998996007888875436828999999964998899801


Q ss_pred             CC
Q ss_conf             43
Q gi|254780754|r   69 GS   70 (264)
Q Consensus        69 G~   70 (264)
                      |.
T Consensus        81 G~   82 (196)
T 2nv0_A           81 GL   82 (196)
T ss_dssp             HH
T ss_pred             HH
T ss_conf             12


No 79 
>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphatase, transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli K12} SCOP: c.23.16.1 c.26.2.1 d.52.2.1
Probab=63.42  E-value=2  Score=21.48  Aligned_cols=70  Identities=20%  Similarity=0.263  Sum_probs=47.8

Q ss_pred             CCCCC--EEEEEEECCCHHHHHHHHHHHHH--CCC-----CCH-----HHCCEEEEECCCHHHHHH-----HHHHHHCCC
Q ss_conf             98765--05999955998999999999987--078-----884-----557799998795489999-----999741287
Q gi|254780754|r    1 MDRNI--QKIHFKASNAKKAQEAYDKFVKI--YGN-----STS-----EEADVIVVLGGDGFMLQS-----FHQSKEYDK   61 (264)
Q Consensus         1 m~~~~--~ki~i~~~~~~~a~~~~~~l~~~--~~~-----~~~-----~~~Dlii~iGGDGT~L~a-----~~~~~~~~~   61 (264)
                      |+.++  .||.++..-.+-++-+++.+.+.  |.+     ...     .+++-||.=||=|+...+     .....+.++
T Consensus         1 M~~~~~~~kIlIlDfGsQytqLIARrvRElgVysEI~p~d~~~eeI~~~~P~GIILSGGP~SV~d~~~p~~~~~i~~~~i   80 (525)
T 1gpm_A            1 MTENIHKHRILILDFGSQYTQLVARRVRELGVYCELWAWDVTEAQIRDFNPSGIILSGGPESTTEENSPRAPQYVFEAGV   80 (525)
T ss_dssp             --CCTTSSEEEEEECSCTTHHHHHHHHHHTTCEEEEEESCCCHHHHHHHCCSEEEECCCSSCTTSTTCCCCCGGGGTSSS
T ss_pred             CCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHCCCCEEEECCCCCCCCCCCCCCCCHHHHCCCC
T ss_conf             99776659089998996399999999997398489981999999997179999998999997666899643899981999


Q ss_pred             EEEEECCCC
Q ss_conf             299415343
Q gi|254780754|r   62 PIYGMNCGS   70 (264)
Q Consensus        62 PilGIn~G~   70 (264)
                      |||||=.|+
T Consensus        81 PILGICyG~   89 (525)
T 1gpm_A           81 PVFGVCYGM   89 (525)
T ss_dssp             CEEEETHHH
T ss_pred             CEEEECHHH
T ss_conf             899988899


No 80 
>2fex_A Conserved hypothetical protein; structural genomics, protein structure initiative, PSI, midwest center for structural genomics; 1.70A {Agrobacterium tumefaciens str} SCOP: c.23.16.2
Probab=63.37  E-value=7.2  Score=17.91  Aligned_cols=39  Identities=15%  Similarity=0.327  Sum_probs=30.9

Q ss_pred             CHHHCCEEEEECCCHH-------HHHHHHHHHHCCCEEEEECCCCC
Q ss_conf             8455779999879548-------99999997412872994153433
Q gi|254780754|r   33 TSEEADVIVVLGGDGF-------MLQSFHQSKEYDKPIYGMNCGSV   71 (264)
Q Consensus        33 ~~~~~Dlii~iGGDGT-------~L~a~~~~~~~~~PilGIn~G~l   71 (264)
                      .+++.|++++.||.+.       ++..++.+...++++.+|-.|..
T Consensus        60 ~~~~yD~lvipGG~~~~~~~~~~l~~~lr~~~~~~~~i~aiC~g~~  105 (188)
T 2fex_A           60 DPVDIDALVIPGGLSWEKGTAADLGGLVKRFRDRDRLVAGICAAAS  105 (188)
T ss_dssp             CTTTCSEEEECCBSHHHHTCCCCCHHHHHHHHHTTCEEEEETHHHH
T ss_pred             CHHHCCEEEECCCCCHHCCCCHHHHHHHHHHHHHCCEEEEECHHHH
T ss_conf             9625588996698711003799999999999973998998287889


No 81 
>1xah_A Sadhqs, 3-dehydroquinate synthase; shikimate pathway, aromatic amino acid biosynthesis, open form, form B, domain movement, cyclase; HET: NAD; 2.20A {Staphylococcus aureus} PDB: 1xag_A* 1xai_A* 1xaj_A* 1xal_A*
Probab=62.68  E-value=7.4  Score=17.84  Aligned_cols=46  Identities=13%  Similarity=0.080  Sum_probs=28.5

Q ss_pred             HHHHHHHHHHHCCCCCHHHCCEEEEECCCHHHHHHHHHHH---HCCCEEE
Q ss_conf             9999999998707888455779999879548999999974---1287299
Q gi|254780754|r   18 AQEAYDKFVKIYGNSTSEEADVIVVLGGDGFMLQSFHQSK---EYDKPIY   64 (264)
Q Consensus        18 a~~~~~~l~~~~~~~~~~~~Dlii~iGGDGT~L~a~~~~~---~~~~Pil   64 (264)
                      +.+..+++.+.+.+...+..|+||++|| |+..-.+....   ..+++++
T Consensus        72 s~~~~~~i~~~l~~~~~~r~d~iiavGG-G~v~D~akfvA~~~~rgi~~i  120 (354)
T 1xah_A           72 TFEQYQETLEYILSHHVTRNTAIIAVGG-GATGDFAGFVAATLLRGVHFI  120 (354)
T ss_dssp             SHHHHHHHHHHHHTTCCCTTCEEEEEES-HHHHHHHHHHHHHBTTCCEEE
T ss_pred             CHHHHHHHHHHHHHCCCCCCCEEEEECC-CCCHHHHHHHHHHHCCCCCEE
T ss_conf             9899999999999769898761799658-730225988899863797426


No 82 
>1qo0_D AMIR; binding protein, gene regulator, receptor; 2.25A {Pseudomonas aeruginosa} SCOP: c.23.1.3
Probab=62.44  E-value=7.5  Score=17.81  Aligned_cols=85  Identities=8%  Similarity=0.026  Sum_probs=50.2

Q ss_pred             EEEEEECCCHHHHHHHHHHHHHCCC----------CCHHHCCEEEE---ECCCHHHHHHHHHHHHCCCEEEEECC-----
Q ss_conf             5999955998999999999987078----------88455779999---87954899999997412872994153-----
Q gi|254780754|r    7 KIHFKASNAKKAQEAYDKFVKIYGN----------STSEEADVIVV---LGGDGFMLQSFHQSKEYDKPIYGMNC-----   68 (264)
Q Consensus         7 ki~i~~~~~~~a~~~~~~l~~~~~~----------~~~~~~Dlii~---iGGDGT~L~a~~~~~~~~~PilGIn~-----   68 (264)
                      ++.++ ++.+...........+.+.          .-...+|+|+.   ..|.|...-+...-...++||+.+-.     
T Consensus        14 ~vLvv-dd~~~~~~~l~~~L~~~G~~v~~~~~~~~al~~~~D~vl~D~~mp~~~~~~~~~~~~~~~~~pvI~lt~~~~~~   92 (196)
T 1qo0_D           14 QVLVL-NPPGEVSDALVLQLIRIGCSVRQCWPPPEAFDVPVDVVFTSIFQNRHHDEIAALLAAGTPRTTLVALVEYESPA   92 (196)
T ss_dssp             EEEEE-SCTTHHHHHHHHHHHHHTCEEEEECSCCSSCSSCCSEEEEECCSSTHHHHHHHHHHHSCTTCEEEEEECCCSHH
T ss_pred             EEEEE-ECCHHHHHHHHHHHHHCCCEEECCCCHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHCCCCCCEEEEECCCCHH
T ss_conf             69999-57999999999999986998871699799848899989984899998599999998649999889984579999


Q ss_pred             --------CCCCCCCCCCCHHHHHHHHHHCCC
Q ss_conf             --------433201044587899986642012
Q gi|254780754|r   69 --------GSVGFLMNEYCIENLVERLSVAVE   92 (264)
Q Consensus        69 --------G~lGFL~~~~~~~~~~~~l~~~~~   92 (264)
                              |-.+||.-++.++.+...+.....
T Consensus        93 ~~~~a~~~Ga~~yl~KP~~~~~L~~~l~~~~~  124 (196)
T 1qo0_D           93 VLSQIIELECHGVITQPLDAHRVLPVLVSARR  124 (196)
T ss_dssp             HHHHHHHHTCSEEEESSCCGGGHHHHHHHHHH
T ss_pred             HHHHHHHCCCCEEECCCCCHHHHHHHHHHHHH
T ss_conf             99999985999865599998999999999999


No 83 
>2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate, glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A {Streptomyces antibioticus}
Probab=62.20  E-value=7.6  Score=17.78  Aligned_cols=32  Identities=16%  Similarity=0.043  Sum_probs=20.7

Q ss_pred             HHCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf             55779999879548999999974128729941534
Q gi|254780754|r   35 EEADVIVVLGGDGFMLQSFHQSKEYDKPIYGMNCG   69 (264)
Q Consensus        35 ~~~Dlii~iGGDGT~L~a~~~~~~~~~PilGIn~G   69 (264)
                      ..+|++++-......+.+++.   ..+|++.++..
T Consensus       108 ~~pDvvi~~~~~~~~~~~a~~---~~ip~v~~~~~  139 (424)
T 2iya_A          108 DRPDLIVYDIASWPAPVLGRK---WDIPFVQLSPT  139 (424)
T ss_dssp             SCCSEEEEETTCTHHHHHHHH---HTCCEEEEESS
T ss_pred             CCCCEEEECCCCHHHHHHHHH---HCCCEEEEECC
T ss_conf             599689825545599999998---36985999525


No 84 
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative; 2.04A {Staphylococcus aureus}
Probab=61.41  E-value=7.8  Score=17.69  Aligned_cols=90  Identities=14%  Similarity=0.311  Sum_probs=57.2

Q ss_pred             CCCEEEEEEECCCHHHHHHHHHHHHHCCC-------CCH---------HHCCEEEE----ECCCHH-HHHHHHHHHHCCC
Q ss_conf             76505999955998999999999987078-------884---------55779999----879548-9999999741287
Q gi|254780754|r    3 RNIQKIHFKASNAKKAQEAYDKFVKIYGN-------STS---------EEADVIVV----LGGDGF-MLQSFHQSKEYDK   61 (264)
Q Consensus         3 ~~~~ki~i~~~~~~~a~~~~~~l~~~~~~-------~~~---------~~~Dlii~----iGGDGT-~L~a~~~~~~~~~   61 (264)
                      ++|.||.++ ++.+...+..+.+.+..+.       .+.         ..+|+++.    =|.||. +++.++.. ..++
T Consensus         1 M~m~~ILIv-DD~~~~r~~l~~~L~~~~~~~vv~~a~~g~eal~~~~~~~pDlvllDi~mP~~~G~e~~~~ir~~-~~~~   78 (133)
T 3b2n_A            1 MSLTSLIIA-EDQNMLRQAMVQLIKLHGDFEILADTDNGLDAMKLIEEYNPNVVILDIEMPGMTGLEVLAEIRKK-HLNI   78 (133)
T ss_dssp             --CEEEEEE-CSCHHHHHHHHHHHHHHSSEEEEEEESCHHHHHHHHHHHCCSEEEECSSCSSSCHHHHHHHHHHT-TCSC
T ss_pred             CCCCEEEEE-ECCHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHH-CCCC
T ss_conf             999999999-29999999999999868996999998999999999985699999995778999889999999986-8999


Q ss_pred             EEEEECC-------------CCCCCCCCCCCHHHHHHHHHHCCCCC
Q ss_conf             2994153-------------43320104458789998664201243
Q gi|254780754|r   62 PIYGMNC-------------GSVGFLMNEYCIENLVERLSVAVECT   94 (264)
Q Consensus        62 PilGIn~-------------G~lGFL~~~~~~~~~~~~l~~~~~~~   94 (264)
                      ||+=+..             |-.|||.-+++.+++.+++.++..++
T Consensus        79 ~vI~lT~~~~~~~~~~a~~~Ga~~yl~Kp~~~~~L~~~I~~v~~g~  124 (133)
T 3b2n_A           79 KVIIVTTFKRPGYFEKAVVNDVDAYVLKERSIEELVETINKVNNGE  124 (133)
T ss_dssp             EEEEEESCCCHHHHHHHHHTTCSEEEETTSCHHHHHHHHHHHHC--
T ss_pred             CEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCC
T ss_conf             6899967899999999998799789979999999999999999718


No 85 
>2c1x_A UDP-glucose flavonoid 3-O glycosyltransferase; WINE, catalysis, glycosylation; HET: UDP B3P; 1.9A {Vitis vinifera} SCOP: c.87.1.10 PDB: 2c1z_A* 2c9z_A*
Probab=61.35  E-value=4.9  Score=18.99  Aligned_cols=30  Identities=13%  Similarity=0.145  Sum_probs=14.2

Q ss_pred             HCCEEEEECCCHHHHHHHHHHHHCCCEEEEECC
Q ss_conf             577999987954899999997412872994153
Q gi|254780754|r   36 EADVIVVLGGDGFMLQSFHQSKEYDKPIYGMNC   68 (264)
Q Consensus        36 ~~Dlii~iGGDGT~L~a~~~~~~~~~PilGIn~   68 (264)
                      .+|++|+   |.+..-+...+...++|.+...+
T Consensus       112 ~~D~vi~---D~~~~~~~~ia~~~~~p~~~~~~  141 (456)
T 2c1x_A          112 PVSCLVA---DAFIWFAADMAAEMGVAWLPFWT  141 (456)
T ss_dssp             CCCEEEE---ETTSTTHHHHHHHHTCEEEEEEC
T ss_pred             CCEEEEE---CCCCHHHHHHHHHHCCCCEECCC
T ss_conf             9769997---78337899999995898410124


No 86 
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structure initiative; 1.80A {Bacteroides fragilis YCH46}
Probab=61.05  E-value=7.9  Score=17.65  Aligned_cols=88  Identities=22%  Similarity=0.315  Sum_probs=53.2

Q ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHCCC-----CC---------HHHCCEEEEE---------CCCHH-HHHHHHHHHHC
Q ss_conf             6505999955998999999999987078-----88---------4557799998---------79548-99999997412
Q gi|254780754|r    4 NIQKIHFKASNAKKAQEAYDKFVKIYGN-----ST---------SEEADVIVVL---------GGDGF-MLQSFHQSKEY   59 (264)
Q Consensus         4 ~~~ki~i~~~~~~~a~~~~~~l~~~~~~-----~~---------~~~~Dlii~i---------GGDGT-~L~a~~~~~~~   59 (264)
                      .|.||.++.++ +......+.+.+..+.     ..         .+.+|++++=         |-||. +++.++.. ..
T Consensus         2 s~~~ILiVDDd-~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~dlillDl~mP~~~~~G~dGl~~l~~ir~~-~~   79 (140)
T 2qr3_A            2 SLGTIIIVDDN-KGVLTAVQLLLKNHFSKVITLSSPVSLSTVLREENPEVVLLDMNFTSGINNGNEGLFWLHEIKRQ-YR   79 (140)
T ss_dssp             CCCEEEEECSC-HHHHHHHHHHHTTTSSEEEEECCHHHHHHHHHHSCEEEEEEETTTTC-----CCHHHHHHHHHHH-CT
T ss_pred             CCCEEEEEECC-HHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHH-CC
T ss_conf             99989999799-99999999999978999999899999999997279999999168877776775199999999986-89


Q ss_pred             CCEEEEECC-------------CCCCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf             872994153-------------4332010445878999866420124
Q gi|254780754|r   60 DKPIYGMNC-------------GSVGFLMNEYCIENLVERLSVAVEC   93 (264)
Q Consensus        60 ~~PilGIn~-------------G~lGFL~~~~~~~~~~~~l~~~~~~   93 (264)
                      ++||+-+..             |-.+||+-+++.+++.+.+.++...
T Consensus        80 ~ipvI~lT~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~al~~  126 (140)
T 2qr3_A           80 DLPVVLFTAYADIDLAVRGIKEGASDFVVKPWDNQKLLETLLNAASQ  126 (140)
T ss_dssp             TCCEEEEEEGGGHHHHHHHHHTTCCEEEEESCCHHHHHHHHHHHHTC
T ss_pred             CCCEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHH
T ss_conf             98289997899999999999869978997989999999999999997


No 87 
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=60.95  E-value=8  Score=17.64  Aligned_cols=90  Identities=14%  Similarity=0.170  Sum_probs=50.7

Q ss_pred             CCCCCEEEEEEECCCHHHHHHHHHHHHHCCCC-------CH---------HHCCEEEEE----CCCHH-HHHHHHHHHHC
Q ss_conf             98765059999559989999999999870788-------84---------557799998----79548-99999997412
Q gi|254780754|r    1 MDRNIQKIHFKASNAKKAQEAYDKFVKIYGNS-------TS---------EEADVIVVL----GGDGF-MLQSFHQSKEY   59 (264)
Q Consensus         1 m~~~~~ki~i~~~~~~~a~~~~~~l~~~~~~~-------~~---------~~~Dlii~i----GGDGT-~L~a~~~~~~~   59 (264)
                      |..+-.|+.++ ++.+...+....+.+.++..       +.         ..+|+++.=    |.||. +++.++... .
T Consensus         5 Ms~~kirvLIV-DD~~~~r~~l~~~L~~~~~~~vv~~a~~g~eal~~l~~~~~DlvilDi~mP~~dG~el~~~ir~~~-~   82 (143)
T 2qv0_A            5 MSGEKMKVIIV-EDEFLAQQELSWLINTHSQMEIVGSFDDGLDVLKFLQHNKVDAIFLDINIPSLDGVLLAQNISQFA-H   82 (143)
T ss_dssp             -----CEEEEE-CSCHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHHHHCCCSEEEECSSCSSSCHHHHHHHHTTST-T
T ss_pred             CCCCCCEEEEE-ECCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHCC-C
T ss_conf             48998889999-499999999999998689927999979999999999866999899878888899899999999549-9


Q ss_pred             CCEEEEE-----------CCCCCCCCCCCCCHHHHHHHHHHCCC
Q ss_conf             8729941-----------53433201044587899986642012
Q gi|254780754|r   60 DKPIYGM-----------NCGSVGFLMNEYCIENLVERLSVAVE   92 (264)
Q Consensus        60 ~~PilGI-----------n~G~lGFL~~~~~~~~~~~~l~~~~~   92 (264)
                      .+|++=+           ..|-.+||.-+++.+.+.+.+.++..
T Consensus        83 ~~~iI~~t~~~e~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~~~  126 (143)
T 2qv0_A           83 KPFIVFITAWKEHAVEAFELEAFDYILKPYQESRIINMLQKLTT  126 (143)
T ss_dssp             CCEEEEEESCCTTHHHHHHTTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred             CCEEEEEECCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
T ss_conf             98089997788999999985998899799999999999999999


No 88 
>3hdv_A Response regulator; PSI-II, structural genomics, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.09A {Pseudomonas putida KT2440}
Probab=60.71  E-value=8  Score=17.62  Aligned_cols=84  Identities=15%  Similarity=0.260  Sum_probs=47.4

Q ss_pred             EEEEEECCCHHHHHHHHHHHHHCCCC-----CH----------HHCCEEEE----ECCCHH-HHHHHHHHHHCCCEEEEE
Q ss_conf             59999559989999999999870788-----84----------55779999----879548-999999974128729941
Q gi|254780754|r    7 KIHFKASNAKKAQEAYDKFVKIYGNS-----TS----------EEADVIVV----LGGDGF-MLQSFHQSKEYDKPIYGM   66 (264)
Q Consensus         7 ki~i~~~~~~~a~~~~~~l~~~~~~~-----~~----------~~~Dlii~----iGGDGT-~L~a~~~~~~~~~PilGI   66 (264)
                      +|. +.++++...+....+.+.++-.     ..          ..+|+|++    =|.||. +++..|......+||+-+
T Consensus         9 ~IL-iVDD~~~~r~~l~~~L~~~G~~v~~a~~~~~a~~~l~~~~~~dlii~D~~mP~~~G~el~~~ir~~~~~~~piI~l   87 (136)
T 3hdv_A            9 LVL-VVDDNAVNREALILYLKSRGIDAVGADGAEEARLYLHYQKRIGLMITDLRMQPESGLDLIRTIRASERAALSIIVV   87 (136)
T ss_dssp             EEE-EECSCHHHHHHHHHHHHHTTCCEEEESSHHHHHHHHHHCTTEEEEEECSCCSSSCHHHHHHHHHTSTTTTCEEEEE
T ss_pred             EEE-EEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCCEEEEE
T ss_conf             899-9979999999999999987999999899999999997579998899879899998999999999557999919999


Q ss_pred             CC-------------CCCCCCCCCCCHHHHHHHHHHCC
Q ss_conf             53-------------43320104458789998664201
Q gi|254780754|r   67 NC-------------GSVGFLMNEYCIENLVERLSVAV   91 (264)
Q Consensus        67 n~-------------G~lGFL~~~~~~~~~~~~l~~~~   91 (264)
                      ..             |-.+||.-++..+++.+.+.+..
T Consensus        88 T~~~~~~~~~~a~~~G~~d~l~KP~~~~~L~~~v~~~L  125 (136)
T 3hdv_A           88 SGDTDVEEAVDVMHLGVVDFLLKPVDLGKLLELVNKEL  125 (136)
T ss_dssp             ESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHH
T ss_pred             ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH
T ss_conf             88899999999998699989989899999999999999


No 89 
>1vhq_A Enhancing lycopene biosynthesis protein 2; structural genomics, unknown function; 1.65A {Escherichia coli} SCOP: c.23.16.2 PDB: 1oy1_A
Probab=59.94  E-value=8.3  Score=17.53  Aligned_cols=38  Identities=24%  Similarity=0.273  Sum_probs=31.5

Q ss_pred             CHHHCCEEEEECCCHH-------------------HHHHHHHHHHCCCEEEEECCCC
Q ss_conf             8455779999879548-------------------9999999741287299415343
Q gi|254780754|r   33 TSEEADVIVVLGGDGF-------------------MLQSFHQSKEYDKPIYGMNCGS   70 (264)
Q Consensus        33 ~~~~~Dlii~iGGDGT-------------------~L~a~~~~~~~~~PilGIn~G~   70 (264)
                      +++++|.++.-||-|.                   +.+.++.+...++|+-.|=.|-
T Consensus        87 ~~~dyD~lviPGG~g~~~~L~~~~~~~~~~~~~~~v~~~i~~~~~~~K~iaaIC~ap  143 (232)
T 1vhq_A           87 DAAELDALIVPGGFGAAKNLSNFASLGSECTVDRELKALAQAMHQAGKPLGFMCIAP  143 (232)
T ss_dssp             CGGGCSEEEECCSTHHHHTSBCHHHHGGGCCBCHHHHHHHHHHHHTTCCEEEETTGG
T ss_pred             CHHHCCEEEECCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEECHHH
T ss_conf             941288899789954288865400246433339999999999998699799988669


No 90 
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=59.90  E-value=8.3  Score=17.53  Aligned_cols=44  Identities=23%  Similarity=0.310  Sum_probs=34.4

Q ss_pred             HHCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf             55779999879548999999974128729941534332010445878999866420124
Q gi|254780754|r   35 EEADVIVVLGGDGFMLQSFHQSKEYDKPIYGMNCGSVGFLMNEYCIENLVERLSVAVEC   93 (264)
Q Consensus        35 ~~~Dlii~iGGDGT~L~a~~~~~~~~~PilGIn~G~lGFL~~~~~~~~~~~~l~~~~~~   93 (264)
                      +.+|++|+=||-+.+|+.     ..++||+-|.          .+..|+..+|.++...
T Consensus        62 ~~~DviISRG~ta~~Ir~-----~~~iPVVeI~----------vs~~Dil~aL~~a~~~  105 (225)
T 2pju_A           62 ERCDAIIAAGSNGAYLKS-----RLSVPVILIK----------PSGYDVLQFLAKAGKL  105 (225)
T ss_dssp             SCCSEEEEEHHHHHHHHT-----TCSSCEEEEC----------CCHHHHHHHHHHTTCT
T ss_pred             CCCCEEEECCHHHHHHHH-----HCCCCEEEEE----------CCHHHHHHHHHHHHHH
T ss_conf             998699968568999998-----5899889970----------7876899999999975


No 91 
>3noq_A THIJ/PFPI family protein; DJ-1 superfamily, isocyanide hydratase, isonitrIle hydratase; HET: NHE; 1.00A {Pseudomonas fluorescens} PDB: 3noo_A 3nor_A* 3nov_A
Probab=59.46  E-value=8.4  Score=17.48  Aligned_cols=38  Identities=26%  Similarity=0.396  Sum_probs=29.8

Q ss_pred             CHHHCCEEEEECCCHH--------HHHHHHHHHHCCCEEEEECCCC
Q ss_conf             8455779999879548--------9999999741287299415343
Q gi|254780754|r   33 TSEEADVIVVLGGDGF--------MLQSFHQSKEYDKPIYGMNCGS   70 (264)
Q Consensus        33 ~~~~~Dlii~iGGDGT--------~L~a~~~~~~~~~PilGIn~G~   70 (264)
                      +.+++|++++.||.+.        ++..++.......++.++.+|.
T Consensus        62 ~~~~~D~liVpgg~~~~~~~~~~~l~~~l~~~~~~g~~i~~ic~G~  107 (231)
T 3noq_A           62 DCPPLDVICIPGGTGVGALMEDPQALAFIRQQAARARYVTSVSTGS  107 (231)
T ss_dssp             TCCCCSEEEECCSTTHHHHTTCHHHHHHHHHHHTTCSEEEEETTHH
T ss_pred             HCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEECCCCH
T ss_conf             5673588963787654344689999999998876197896125311


No 92 
>1fy2_A Aspartyl dipeptidase; serine protease, catalytic triad, strand-helix motif, hydrolase; 1.20A {Salmonella typhimurium} SCOP: c.23.16.4 PDB: 1fye_A
Probab=58.96  E-value=8.6  Score=17.43  Aligned_cols=37  Identities=27%  Similarity=0.451  Sum_probs=20.8

Q ss_pred             HHCCEEEEECCCHHHHH----------HHHHHHHCCCEEEEECCCCC
Q ss_conf             55779999879548999----------99997412872994153433
Q gi|254780754|r   35 EEADVIVVLGGDGFMLQ----------SFHQSKEYDKPIYGMNCGSV   71 (264)
Q Consensus        35 ~~~Dlii~iGGDGT~L~----------a~~~~~~~~~PilGIn~G~l   71 (264)
                      +++|+|.+-|||=..|.          +++.....+.++.|...|..
T Consensus        78 ~~ad~I~~~GGn~~~l~~~l~~t~l~~~i~~~~~~G~vi~G~SAGA~  124 (229)
T 1fy2_A           78 EKAEIIIVGGGNTFQLLKESRERGLLAPMADRVKRGALYIGWSAGAN  124 (229)
T ss_dssp             HHCSEEEECCSCHHHHHHHHHHTTCHHHHHHHHHTTCEEEEETHHHH
T ss_pred             HHCCEEEECCCCHHHHHHHHHHCCHHHHHHHHHHCCCEEEEECHHHH
T ss_conf             74999998898999999998738869999999875987999666776


No 93 
>2acv_A Triterpene UDP-glucosyl transferase UGT71G1; glycosyltransferase; HET: UDP; 2.00A {Medicago truncatula} SCOP: c.87.1.10 PDB: 2acw_A*
Probab=58.75  E-value=5.4  Score=18.69  Aligned_cols=20  Identities=10%  Similarity=-0.262  Sum_probs=10.0

Q ss_pred             HCCEEEEECCCHHHHHHHHH
Q ss_conf             57799998795489999999
Q gi|254780754|r   36 EADVIVVLGGDGFMLQSFHQ   55 (264)
Q Consensus        36 ~~Dlii~iGGDGT~L~a~~~   55 (264)
                      .+|+++.-.-....+..++.
T Consensus       114 ~~d~iv~d~~~~~~~~~a~~  133 (463)
T 2acv_A          114 KVVGLVLDFFCVSMIDVGNE  133 (463)
T ss_dssp             TEEEEEEEGGGGGGHHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHH
T ss_conf             98699983711889999999


No 94 
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=56.92  E-value=9.3  Score=17.21  Aligned_cols=84  Identities=15%  Similarity=0.342  Sum_probs=49.3

Q ss_pred             EEEEEEECCCHHHHHHHHHHHHHCCC-----CC---------HHHCCEEEEE----CCCHH-HHHHHHHHHHCCCEEEEE
Q ss_conf             05999955998999999999987078-----88---------4557799998----79548-999999974128729941
Q gi|254780754|r    6 QKIHFKASNAKKAQEAYDKFVKIYGN-----ST---------SEEADVIVVL----GGDGF-MLQSFHQSKEYDKPIYGM   66 (264)
Q Consensus         6 ~ki~i~~~~~~~a~~~~~~l~~~~~~-----~~---------~~~~Dlii~i----GGDGT-~L~a~~~~~~~~~PilGI   66 (264)
                      ||+.++.++..-...+...|.+ .+-     ..         .+.+|++++=    |.||. +++.++.. ...+|++-+
T Consensus         1 mrILvVdDd~~~~~~l~~~L~~-~G~~v~~a~~~~~al~~l~~~~~dlii~D~~mp~~dG~e~~~~lr~~-~~~~pii~l   78 (121)
T 2pl1_A            1 MRVLVVEDNALLRHHLKVQIQD-AGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSLIRRWRSN-DVSLPILVL   78 (121)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHH-TTCEEEEESSHHHHHHHHHHSCCSEEEECSCCSSSCHHHHHHHHHHT-TCCSCEEEE
T ss_pred             CEEEEEECCHHHHHHHHHHHHH-CCCEEEEECCHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHHC-CCCCCEEEE
T ss_conf             9899996899999999999998-79999998999999999645899899988999998747899999963-999818999


Q ss_pred             CC-------------CCCCCCCCCCCHHHHHHHHHHCC
Q ss_conf             53-------------43320104458789998664201
Q gi|254780754|r   67 NC-------------GSVGFLMNEYCIENLVERLSVAV   91 (264)
Q Consensus        67 n~-------------G~lGFL~~~~~~~~~~~~l~~~~   91 (264)
                      -.             |--+||.-+++.+++...+....
T Consensus        79 t~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~l  116 (121)
T 2pl1_A           79 TARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALM  116 (121)
T ss_dssp             ESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHH
T ss_pred             ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH
T ss_conf             78899999999998699999979899999999999997


No 95 
>2q5c_A NTRC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=56.83  E-value=9.3  Score=17.20  Aligned_cols=76  Identities=14%  Similarity=0.097  Sum_probs=47.6

Q ss_pred             CCCCCEEEEEEECCCHHHHHHHHHHHHHCCC-----------------CCHHHCCEEEEECCCHHHHHHHHHHHHCCCEE
Q ss_conf             9876505999955998999999999987078-----------------88455779999879548999999974128729
Q gi|254780754|r    1 MDRNIQKIHFKASNAKKAQEAYDKFVKIYGN-----------------STSEEADVIVVLGGDGFMLQSFHQSKEYDKPI   63 (264)
Q Consensus         1 m~~~~~ki~i~~~~~~~a~~~~~~l~~~~~~-----------------~~~~~~Dlii~iGGDGT~L~a~~~~~~~~~Pi   63 (264)
                      |+++ +||.+++.....+..+ .++.+..+-                 .-.+.+|++|+=||-..+|+.     ..++||
T Consensus         1 m~~~-~kI~~iap~e~l~~l~-~~~a~~~~~~~~~~~~~l~~~~~iA~~l~~~~DVIISRGgTa~~Ir~-----~~~iPV   73 (196)
T 2q5c_A            1 MSLS-LKIALISQNENLLNLF-PKLALEKNFIPITKTASLTRASKIAFGLQDEVDAIISRGATSDYIKK-----SVSIPS   73 (196)
T ss_dssp             -CCC-CEEEEEESCHHHHHHH-HHHHHHHTCEEEEEECCHHHHHHHHHHHTTTCSEEEEEHHHHHHHHT-----TCSSCE
T ss_pred             CCCC-CEEEEECCCHHHHHHH-HHHHHHCCCEEEEEEEEHHHHHHHHHHHHCCCCEEEECCHHHHHHHH-----HCCCCE
T ss_conf             9875-1599987938899999-99997548756788666999999999754398799989658999998-----289977


Q ss_pred             EEECCCCCCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf             941534332010445878999866420124
Q gi|254780754|r   64 YGMNCGSVGFLMNEYCIENLVERLSVAVEC   93 (264)
Q Consensus        64 lGIn~G~lGFL~~~~~~~~~~~~l~~~~~~   93 (264)
                      +.|.          .+..|+..+|..+...
T Consensus        74 VeI~----------vs~~Dil~al~~a~~~   93 (196)
T 2q5c_A           74 ISIK----------VTRFDTMRAVYNAKRF   93 (196)
T ss_dssp             EEEC----------CCHHHHHHHHHHHGGG
T ss_pred             EEEC----------CCHHHHHHHHHHHHHH
T ss_conf             9980----------7887999999999975


No 96 
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=56.78  E-value=9.4  Score=17.20  Aligned_cols=92  Identities=16%  Similarity=0.283  Sum_probs=56.2

Q ss_pred             CCCCCEEEEEEECCCHHHHHHHHHHHHHCC-C------CCH---------HHCCEEEE-E---CCCHH-HHHHHHHHHHC
Q ss_conf             987650599995599899999999998707-8------884---------55779999-8---79548-99999997412
Q gi|254780754|r    1 MDRNIQKIHFKASNAKKAQEAYDKFVKIYG-N------STS---------EEADVIVV-L---GGDGF-MLQSFHQSKEY   59 (264)
Q Consensus         1 m~~~~~ki~i~~~~~~~a~~~~~~l~~~~~-~------~~~---------~~~Dlii~-i---GGDGT-~L~a~~~~~~~   59 (264)
                      |...-.|+.++ ++.+...+..+.+.+... .      .+.         ..+|+++. +   |.||. +++.++... .
T Consensus         1 m~ms~~RVLIV-DD~~~~r~~l~~~L~~~~~~~vv~~a~~~~eal~~~~~~~pDlvllDi~mP~~~G~e~~~~ir~~~-~   78 (153)
T 3cz5_A            1 MSLSTARIMLV-DDHPIVREGYRRLIERRPGYAVVAEAADAGEAYRLYRETTPDIVVMDLTLPGPGGIEATRHIRQWD-G   78 (153)
T ss_dssp             ---CCEEEEEE-CSCHHHHHHHHHHHTTSTTEEEEEEESSHHHHHHHHHTTCCSEEEECSCCSSSCHHHHHHHHHHHC-T
T ss_pred             CCCCCCEEEEE-ECCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHC-C
T ss_conf             99888779999-299999999999998589918999989999999997546996899964579987899999999858-9


Q ss_pred             CCEEEEECC-------------CCCCCCCCCCCHHHHHHHHHHCCCCC
Q ss_conf             872994153-------------43320104458789998664201243
Q gi|254780754|r   60 DKPIYGMNC-------------GSVGFLMNEYCIENLVERLSVAVECT   94 (264)
Q Consensus        60 ~~PilGIn~-------------G~lGFL~~~~~~~~~~~~l~~~~~~~   94 (264)
                      .+||+-+..             |--|||.-+++.+++.+++.++..+.
T Consensus        79 ~~~iivlt~~~~~~~~~~al~~Ga~~yl~Kp~~~~~L~~ai~~v~~g~  126 (153)
T 3cz5_A           79 AARILIFTMHQGSAFALKAFEAGASGYVTKSSDPAELVQAIEAILAGR  126 (153)
T ss_dssp             TCCEEEEESCCSHHHHHHHHHTTCSEEEETTSCTTHHHHHHHHHTTTC
T ss_pred             CCCEEEEEEECCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCC
T ss_conf             996899981489999999998699838968999999999999998499


No 97 
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=55.81  E-value=9.7  Score=17.10  Aligned_cols=84  Identities=20%  Similarity=0.329  Sum_probs=47.1

Q ss_pred             CEEEEEEECCCHHHHHHHHHHHHHCCCC-----C---------HHHCCEEEEE----CCCHH-HHHHHHHHHHCCCEEEE
Q ss_conf             5059999559989999999999870788-----8---------4557799998----79548-99999997412872994
Q gi|254780754|r    5 IQKIHFKASNAKKAQEAYDKFVKIYGNS-----T---------SEEADVIVVL----GGDGF-MLQSFHQSKEYDKPIYG   65 (264)
Q Consensus         5 ~~ki~i~~~~~~~a~~~~~~l~~~~~~~-----~---------~~~~Dlii~i----GGDGT-~L~a~~~~~~~~~PilG   65 (264)
                      |.||-++.++...++-+...|. ..+-.     .         ...+|+|+.=    |.||. +++..+.  ..++|++-
T Consensus         1 M~~ILiVDDd~~~~~~l~~~L~-~~g~~v~~a~~~~~al~~~~~~~~dlil~D~~mp~~~G~~l~~~ir~--~~~ipiI~   77 (121)
T 1zh2_A            1 MTNVLIVEDEQAIRRFLRTALE-GDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEFIRDLRQ--WSAVPVIV   77 (121)
T ss_dssp             -CEEEEECSCHHHHHHHHHHHH-TTTCEEEEESSHHHHHHHHHHHCCSEEEEESEETTEEHHHHHHHHHT--TCCCCEEE
T ss_pred             CCEEEEEECCHHHHHHHHHHHH-HCCCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHH--HCCCEEEE
T ss_conf             9849999699999999999999-87999999888999999997179999998099999897999999997--47990999


Q ss_pred             ECC-------------CCCCCCCCCCCHHHHHHHHHHCC
Q ss_conf             153-------------43320104458789998664201
Q gi|254780754|r   66 MNC-------------GSVGFLMNEYCIENLVERLSVAV   91 (264)
Q Consensus        66 In~-------------G~lGFL~~~~~~~~~~~~l~~~~   91 (264)
                      +..             |--+||+-+++.+++...+....
T Consensus        78 lt~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~l  116 (121)
T 1zh2_A           78 LSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVAL  116 (121)
T ss_dssp             EESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHH
T ss_pred             EECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH
T ss_conf             978599999999998699999979999999999999998


No 98 
>3kht_A Response regulator; PSI-II, structural genomics, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.10A {Hahella chejuensis kctc 2396}
Probab=54.95  E-value=10  Score=17.01  Aligned_cols=93  Identities=9%  Similarity=0.129  Sum_probs=50.6

Q ss_pred             CCCCCEEEEEEECCCHHHHHHHHHHHHHCCC-------CC---------HHHCCEEEEE----CCCH-HHHHHHHHHH-H
Q ss_conf             9876505999955998999999999987078-------88---------4557799998----7954-8999999974-1
Q gi|254780754|r    1 MDRNIQKIHFKASNAKKAQEAYDKFVKIYGN-------ST---------SEEADVIVVL----GGDG-FMLQSFHQSK-E   58 (264)
Q Consensus         1 m~~~~~ki~i~~~~~~~a~~~~~~l~~~~~~-------~~---------~~~~Dlii~i----GGDG-T~L~a~~~~~-~   58 (264)
                      |..+-+||.++. +++...++...+.+..+.       ..         ...+|+|+.=    |.|| .+++.+|.-. .
T Consensus         1 msl~~krILlVd-D~~~~~~~l~~~L~~~g~~~~v~~a~~g~~Al~~l~~~~~dliilD~~mP~~~G~el~~~ir~~~~~   79 (144)
T 3kht_A            1 MSLRSKRVLVVE-DNPDDIALIRRVLDRKDIHCQLEFVDNGAKALYQVQQAKYDLIILDIGLPIANGFEVMSAVRKPGAN   79 (144)
T ss_dssp             ----CEEEEEEC-CCHHHHHHHHHHHHHTTCCEEEEEESSHHHHHHHHTTCCCSEEEECTTCGGGCHHHHHHHHHSSSTT
T ss_pred             CCCCCCEEEEEE-CCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHCCCC
T ss_conf             998899899995-8999999999999968998299998999999999971799999986999999999999999837878


Q ss_pred             CCCEEEEECC-------------CCCCCCCCCC-CHHHHHHHHHHCCCCC
Q ss_conf             2872994153-------------4332010445-8789998664201243
Q gi|254780754|r   59 YDKPIYGMNC-------------GSVGFLMNEY-CIENLVERLSVAVECT   94 (264)
Q Consensus        59 ~~~PilGIn~-------------G~lGFL~~~~-~~~~~~~~l~~~~~~~   94 (264)
                      ..+||+-+..             |--+||.-++ ..+++...+......+
T Consensus        80 ~~iPiI~lS~~~~~~~~~~a~~~Ga~~~l~KP~~~~~eL~~~i~~~l~~~  129 (144)
T 3kht_A           80 QHTPIVILTDNVSDDRAKQCMAAGASSVVDKSSNNVTDFYGRIYAIFSYW  129 (144)
T ss_dssp             TTCCEEEEETTCCHHHHHHHHHTTCSEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHH
T ss_conf             99918999888999999999986999999699999999999999999986


No 99 
>3f5d_A Protein YDEA; unknow protein, PSI-II, nysgrc, structural genomics, protein structure initiative; 2.06A {Bacillus subtilis}
Probab=53.65  E-value=10  Score=16.94  Aligned_cols=69  Identities=13%  Similarity=0.164  Sum_probs=45.2

Q ss_pred             CCCEEEEEEECCC-H--HHHHHHHHHHHHCC--------------------------CCCHHHCCEEEEECCCH------
Q ss_conf             7650599995599-8--99999999998707--------------------------88845577999987954------
Q gi|254780754|r    3 RNIQKIHFKASNA-K--KAQEAYDKFVKIYG--------------------------NSTSEEADVIVVLGGDG------   47 (264)
Q Consensus         3 ~~~~ki~i~~~~~-~--~a~~~~~~l~~~~~--------------------------~~~~~~~Dlii~iGGDG------   47 (264)
                      ++|||+.|+--+. .  +.--+.+.+.....                          +..+++.|++|+.||++      
T Consensus         1 m~Mkkv~~ll~d~f~d~E~~~~~~~L~~~~~~~v~~vs~~~~V~s~~Gl~i~~d~~~~~~~~~~d~lvlpGG~~~~~~~~   80 (206)
T 3f5d_A            1 MSLKKALFLILDQYADWEGVYLASALNQREDWSVHTVSLDPIVSSIGGFKTSVDYIIGLEPANFNLLVMIGGDSWSNDNK   80 (206)
T ss_dssp             --CEEEEEECCSSBCTTTSHHHHHHHHTSTTEEEEEEESSSEEEBTTSCEEECSEETTSSCSCCSEEEECCBSCCCCCCH
T ss_pred             CCCCEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCEEECCCCEEECCCHHHCCCCCCCEEEECCCCCCCCCCH
T ss_conf             99878999967996889999999998356984999994899989579928942510212832131999278776432599


Q ss_pred             HHHHHHHHHHHCCCEEEEECCCCC
Q ss_conf             899999997412872994153433
Q gi|254780754|r   48 FMLQSFHQSKEYDKPIYGMNCGSV   71 (264)
Q Consensus        48 T~L~a~~~~~~~~~PilGIn~G~l   71 (264)
                      .++..++.+...+.++.+|-+|..
T Consensus        81 ~l~~~l~~~~~~~~~iaaIC~G~~  104 (206)
T 3f5d_A           81 KLLHFVKTAFQKNIPIAAICGAVD  104 (206)
T ss_dssp             HHHHHHHHHHHTTCCEEEETHHHH
T ss_pred             HHHHHHHHHHHHCCEEEECCCHHH
T ss_conf             999999999860998996280159


No 100
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.15A {Colwellia psychrerythraea 34H}
Probab=53.22  E-value=11  Score=16.84  Aligned_cols=87  Identities=9%  Similarity=0.144  Sum_probs=50.1

Q ss_pred             CCCEEEEEEECCCHHHHHHHHHHHHHCCCC-------------CHHHCCEEEE----ECCCHH-HHHHHHHHHHCCCEEE
Q ss_conf             765059999559989999999999870788-------------8455779999----879548-9999999741287299
Q gi|254780754|r    3 RNIQKIHFKASNAKKAQEAYDKFVKIYGNS-------------TSEEADVIVV----LGGDGF-MLQSFHQSKEYDKPIY   64 (264)
Q Consensus         3 ~~~~ki~i~~~~~~~a~~~~~~l~~~~~~~-------------~~~~~Dlii~----iGGDGT-~L~a~~~~~~~~~Pil   64 (264)
                      +.|+|+.++ ++++...+..+.+.+.++..             ..+.+|+|++    -+.||. +++.++.. ....|++
T Consensus         1 m~~~rILIV-DDd~~~~~~l~~~L~~~g~~v~a~~~~eal~~l~~~~~dlillD~~mP~~dG~el~~~lr~~-~~~~~ii   78 (135)
T 3eqz_A            1 MSLNRVFIV-DDDTLTCNLLKTIVEPIFGNVEAFQHPRAFLTLSLNKQDIIILDLMMPDMDGIEVIRHLAEH-KSPASLI   78 (135)
T ss_dssp             --CCEEEEE-CSCHHHHHHHHHHHTTTCSCEEEESCHHHHTTSCCCTTEEEEEECCTTTTHHHHHHHHHHHT-TCCCEEE
T ss_pred             CCCCEEEEE-ECCHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHC-CCCCCEE
T ss_conf             988999999-29999999999999978998999178999999865899999985999999899999999952-9999799


Q ss_pred             EEC------------------CCCCCCCCCCCCHHHHHHHHHHCC
Q ss_conf             415------------------343320104458789998664201
Q gi|254780754|r   65 GMN------------------CGSVGFLMNEYCIENLVERLSVAV   91 (264)
Q Consensus        65 GIn------------------~G~lGFL~~~~~~~~~~~~l~~~~   91 (264)
                      =+-                  .|-.+||.-+++.+.+...+.+..
T Consensus        79 ils~~~~~~~~~~~~~~~~~~~g~~d~l~KP~~~~~L~~~l~~~~  123 (135)
T 3eqz_A           79 LISGYDSGVLHSAETLALSCGLNVINTFTKPINTEVLTCFLTSLS  123 (135)
T ss_dssp             EEESSCHHHHHHHHHHHHHTTCEEEEEEESSCCHHHHHHHHHHHS
T ss_pred             EEECCCCCCCHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHH
T ss_conf             998357654400999999955999879979899999999999999


No 101
>3e3x_A BIPA; MCSG,PSI2, structural genomics, protein structure initiative, midwest center for structural genomics, GTP-binding; HET: MLZ MLY; 1.95A {Vibrio parahaemolyticus}
Probab=53.21  E-value=11  Score=16.83  Aligned_cols=51  Identities=6%  Similarity=0.060  Sum_probs=34.6

Q ss_pred             EEEEEEEEEEECCEEEEEEEECCEEEEECCCC-HHHHHHH---CCCEE-EEECCCEEEE
Q ss_conf             36788898766787653121035079822665-0446752---29817-7408860586
Q gi|254780754|r  131 LVQAAKLEVKVDDQVRLPELVCDGLVVSTPIG-STAYNFS---ALGPI-LPLESRHLLL  184 (264)
Q Consensus       131 ~~~~~~~~v~id~~~~~~~~~~DGvivSTptG-STAY~lS---aGGpI-v~p~~~~~~i  184 (264)
                      .+....++.+..|..  . .+-||.+||.-+| +|||++.   .-|++ +.|+.++..-
T Consensus       193 ~~~f~~y~p~~~g~~--~-~r~~G~lis~~~g~~~ayal~~lq~rG~lfv~Pg~~VYeG  248 (332)
T 3e3x_A          193 YHTFDHYGPHXGGNI--G-QRVNGVLIANAAGKALTNALFNLQERGRLFIGHGVEVYEG  248 (332)
T ss_dssp             EEEEEEEEECCCCSC--S-CCCCCEEEESSCEECCHHHHHHHTTSEEESCCTTCEECTT
T ss_pred             EEECCCCCCCCCCCC--C-CCCCCCEEEECCCCHHHHHHHHHHHCCCEEECCCCCCCCC
T ss_conf             862154034355766--8-7677533674365216889987764473888689653577


No 102
>1z2w_A Vacuolar protein sorting 29; VPS29, retromer, phosphatase, manganese, protein transport; 2.00A {Mus musculus} SCOP: d.159.1.7 PDB: 1z2x_A 3lh6_A 3lh7_A 1w24_A 2r17_A
Probab=52.96  E-value=6.2  Score=18.34  Aligned_cols=64  Identities=14%  Similarity=0.116  Sum_probs=36.4

Q ss_pred             CCCCEEEEEEECCCH--HHHHHHHHHHHHCCCCCHHHCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf             876505999955998--999999999987078884557799998795489999999741287299415343
Q gi|254780754|r    2 DRNIQKIHFKASNAK--KAQEAYDKFVKIYGNSTSEEADVIVVLGGDGFMLQSFHQSKEYDKPIYGMNCGS   70 (264)
Q Consensus         2 ~~~~~ki~i~~~~~~--~a~~~~~~l~~~~~~~~~~~~Dlii~iGGDGT~L~a~~~~~~~~~PilGIn~G~   70 (264)
                      +++.|||.++++..-  .+..+.+.+.+.+   ..+++|.|+..|-=.. ......+.....|+.++. |+
T Consensus         7 ~~~~MkI~vISDtH~~~~~~~l~~~~~~~~---~~~~vD~iih~GDi~~-~~~~~~l~~~~~~v~~V~-GN   72 (192)
T 1z2w_A            7 TRDRMLVLVLGDLHIPHRCNSLPAKFKKLL---VPGKIQHILCTGNLCT-KESYDYLKTLAGDVHIVR-GD   72 (192)
T ss_dssp             ----CEEEEECCCCBTTTCSSCCHHHHTTC---CTTSCSEEEECSCCBS-HHHHHHHHHHCSEEEECC-CT
T ss_pred             CCCCEEEEEEECCCCCCCCCHHHHHHHHHH---CCCCCCEEEECCCCCC-HHHHHHHHHCCCCEEEEE-CC
T ss_conf             989829999902788986201679999985---3169999999989987-788998874187379991-68


No 103
>2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance, glycosylation, enzyme, macrolide, carbohydrate; HET: ERY UDP; 1.7A {Streptomyces antibioticus}
Probab=52.84  E-value=11  Score=16.80  Aligned_cols=34  Identities=9%  Similarity=-0.027  Sum_probs=22.4

Q ss_pred             HHCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCC
Q ss_conf             5577999987954899999997412872994153433
Q gi|254780754|r   35 EEADVIVVLGGDGFMLQSFHQSKEYDKPIYGMNCGSV   71 (264)
Q Consensus        35 ~~~Dlii~iGGDGT~L~a~~~~~~~~~PilGIn~G~l   71 (264)
                      ..+|+|++-...-..+.+++.   .++|.+.+..+..
T Consensus       103 ~~pD~vi~~~~~~~~~~~a~~---~~iP~v~~~~~~~  136 (430)
T 2iyf_A          103 DIPDLVLHDITSYPARVLARR---WGVPAVSLSPNLV  136 (430)
T ss_dssp             SCCSEEEEETTCHHHHHHHHH---HTCCEEEEESSCC
T ss_pred             CCCEEEEECCCCHHHHHHHHH---CCCCEEEEECCCC
T ss_conf             498399975730269999998---1999899955655


No 104
>1ujn_A Dehydroquinate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, lyase; 1.80A {Thermus thermophilus HB8} SCOP: e.22.1.1
Probab=52.58  E-value=11  Score=16.77  Aligned_cols=35  Identities=11%  Similarity=0.072  Sum_probs=23.6

Q ss_pred             CHHHCCEEEEECCCHHHHHHHHHHH---HCCCEEEEECC
Q ss_conf             8455779999879548999999974---12872994153
Q gi|254780754|r   33 TSEEADVIVVLGGDGFMLQSFHQSK---EYDKPIYGMNC   68 (264)
Q Consensus        33 ~~~~~Dlii~iGGDGT~L~a~~~~~---~~~~PilGIn~   68 (264)
                      ..+..|+++++|| |++.-.+..+.   ..++|++-|-+
T Consensus        81 ~~~r~~~ivaiGG-G~v~D~agf~As~y~rgi~~i~vPT  118 (348)
T 1ujn_A           81 GLPRNATLLVVGG-GTLTDLGGFVAATYLRGVAYLAFPT  118 (348)
T ss_dssp             TCCTTCEEEEEES-HHHHHHHHHHHHHBTTCCEEEEEEC
T ss_pred             CCCCCCCEEEECC-EEEEEHHHHHHHHHHCCCEEEEECC
T ss_conf             9998673489758-1240058999999726944662068


No 105
>3c65_A Uvrabc system protein C; UVRC, endonuclease, nucleotide excision repair, DNA repair, RNAse H, cytoplasm, DNA damage, DNA excision; 1.90A {Bacillus stearothermophilus}
Probab=52.29  E-value=9.3  Score=17.22  Aligned_cols=65  Identities=17%  Similarity=0.224  Sum_probs=37.8

Q ss_pred             CEEEEEEECC-CHHHHHHHHHHHHHC---CCCCHHHCCEEEEECCCHHHHHHHHHH---HHCCCEEEEECCC
Q ss_conf             5059999559-989999999999870---788845577999987954899999997---4128729941534
Q gi|254780754|r    5 IQKIHFKASN-AKKAQEAYDKFVKIY---GNSTSEEADVIVVLGGDGFMLQSFHQS---KEYDKPIYGMNCG   69 (264)
Q Consensus         5 ~~ki~i~~~~-~~~a~~~~~~l~~~~---~~~~~~~~Dlii~iGGDGT~L~a~~~~---~~~~~PilGIn~G   69 (264)
                      +.++.+-... ..+-..+.+.+.++|   .++....|||+++=||-|-+=.|...+   ...++|++|+--|
T Consensus        47 YR~f~ik~~~~~DDy~~m~Evl~Rr~~r~~~~~~~~PDLilIDGGkgQl~~a~~~l~~~~~~~i~ii~iaK~  118 (226)
T 3c65_A           47 YRKYKVKTVAGPNDYETMREVVRRRYTRVLKEGLPLPDLIIIDGGKGHLSAVRDVLENELGLDVPLAGLAKD  118 (226)
T ss_dssp             CEEEECCCCCTTCHHHHHHHHHHHHHHHHHHHTCCCCSEEEESSCHHHHHHHHHHHHHTSCCCCCEEEC---
T ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHHCCCCCCEEEECCC
T ss_conf             602265678899749999999999877766318999998997898899999999999747888544430245


No 106
>3iaa_A CALG2; glycosyltransferase, calicheamicin, TDP, enediyne, TR; HET: TYD; 2.50A {Micromonospora echinospora}
Probab=52.19  E-value=11  Score=16.73  Aligned_cols=24  Identities=13%  Similarity=0.073  Sum_probs=13.4

Q ss_pred             CCEEEEECCCCHHHHHHHCCCEEE
Q ss_conf             350798226650446752298177
Q gi|254780754|r  152 CDGLVVSTPIGSTAYNFSALGPIL  175 (264)
Q Consensus       152 ~DGvivSTptGSTAY~lSaGGpIv  175 (264)
                      +|.++.-...||+.-++++|=|+|
T Consensus       314 ~~~~i~~gg~~t~~Eala~G~P~v  337 (416)
T 3iaa_A          314 ATVCVTHGGMGTLMEALYWGRPLV  337 (416)
T ss_dssp             EEEEEESCCHHHHHHHHHTTCCEE
T ss_pred             CCEEEEECCCCCHHHHHHHCCCEE
T ss_conf             423575156684999999499999


No 107
>2kkn_A Uncharacterized protein; protein phosphatase 2A homologue, structural genomics, PSI- 2, protein structure initiative; NMR {Thermotoga maritima}
Probab=52.05  E-value=6.9  Score=18.03  Aligned_cols=61  Identities=18%  Similarity=0.361  Sum_probs=34.9

Q ss_pred             CCCEEEEEEECCCH--HHHHHHHHHHHHCCCCCHHHCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf             76505999955998--999999999987078884557799998795489999999741287299415343
Q gi|254780754|r    3 RNIQKIHFKASNAK--KAQEAYDKFVKIYGNSTSEEADVIVVLGGDGFMLQSFHQSKEYDKPIYGMNCGS   70 (264)
Q Consensus         3 ~~~~ki~i~~~~~~--~a~~~~~~l~~~~~~~~~~~~Dlii~iGGDGT~L~a~~~~~~~~~PilGIn~G~   70 (264)
                      +.||||.++++..-  .+.++.+.+.+.+     +++|+||..| |-+=..++..+.....|++.|. |+
T Consensus        20 ~~~~rIliiSDtH~~~~~~~l~~~i~~~~-----~~~D~iih~G-D~~~~~~l~~l~~~~~~v~~V~-GN   82 (178)
T 2kkn_A           20 QGVKRFLLISDSHVPVRMASLPDEILNSL-----KEYDGVIGLG-DYVDLDTVILLEKFSKEFYGVH-GN   82 (178)
T ss_dssp             --CEEEEEECCCCBTTTTCCCCHHHHHGG-----GGCSEEEESS-CBSCHHHHHHHHHHTSSEEECC-CS
T ss_pred             HCCEEEEEECCCCCCCCCHHHHHHHHHHH-----CCCCEEEECC-CCCCHHHHHHHHHCCCCEEEEE-CC
T ss_conf             27129999967898864102569999874-----4789999999-9866757899873079879998-99


No 108
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=51.98  E-value=11  Score=16.71  Aligned_cols=91  Identities=13%  Similarity=0.245  Sum_probs=54.8

Q ss_pred             CCCCCEEEEEEECCCHHHHHHHHHHHHHCCC-----C---------CHHHCCEEEE----ECCCHH-HHHHHHHHHH-CC
Q ss_conf             9876505999955998999999999987078-----8---------8455779999----879548-9999999741-28
Q gi|254780754|r    1 MDRNIQKIHFKASNAKKAQEAYDKFVKIYGN-----S---------TSEEADVIVV----LGGDGF-MLQSFHQSKE-YD   60 (264)
Q Consensus         1 m~~~~~ki~i~~~~~~~a~~~~~~l~~~~~~-----~---------~~~~~Dlii~----iGGDGT-~L~a~~~~~~-~~   60 (264)
                      |..+-.||.++. +++...+....+.+..+-     .         ....+|+|+.    =|.||. +++..|.... ..
T Consensus         3 ~~~~~~kILiVD-Dd~~~~~~l~~~L~~~G~~v~~a~~~~~al~~l~~~~~DlillD~~mP~~dG~el~~~ir~~~~~~~   81 (154)
T 3gt7_A            3 LSNRAGEILIVE-DSPTQAEHLKHILEETGYQTEHVRNGREAVRFLSLTRPDLIISDVLMPEMDGYALCRWLKGQPDLRT   81 (154)
T ss_dssp             ----CCEEEEEC-SCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHTTCCCSEEEEESCCSSSCHHHHHHHHHHSTTTTT
T ss_pred             CCCCCCEEEEEE-CCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCC
T ss_conf             999999099997-9999999999999987999999899999999998389999998089999988799999985845579


Q ss_pred             CEEEEEC-------------CCCCCCCCCCCCHHHHHHHHHHCCC
Q ss_conf             7299415-------------3433201044587899986642012
Q gi|254780754|r   61 KPIYGMN-------------CGSVGFLMNEYCIENLVERLSVAVE   92 (264)
Q Consensus        61 ~PilGIn-------------~G~lGFL~~~~~~~~~~~~l~~~~~   92 (264)
                      +||+-+.             .|--+||+-++..+.+...+.+...
T Consensus        82 iPiI~lTa~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~l~  126 (154)
T 3gt7_A           82 IPVILLTILSDPRDVVRSLECGADDFITKPCKDVVLASHVKRLLS  126 (154)
T ss_dssp             SCEEEEECCCSHHHHHHHHHHCCSEEEESSCCHHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
T ss_conf             959999826999999999977988799798999999999999999


No 109
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=51.11  E-value=12  Score=16.62  Aligned_cols=90  Identities=13%  Similarity=0.176  Sum_probs=51.2

Q ss_pred             CCCCCEEEEEEECCCHHHHHHHHHHHHH-CC---CCC---------HHHCCEEEE----ECCCHH-HHHHHHHHHHCCCE
Q ss_conf             9876505999955998999999999987-07---888---------455779999----879548-99999997412872
Q gi|254780754|r    1 MDRNIQKIHFKASNAKKAQEAYDKFVKI-YG---NST---------SEEADVIVV----LGGDGF-MLQSFHQSKEYDKP   62 (264)
Q Consensus         1 m~~~~~ki~i~~~~~~~a~~~~~~l~~~-~~---~~~---------~~~~Dlii~----iGGDGT-~L~a~~~~~~~~~P   62 (264)
                      |+.+ .||.++.++...+..+.+.|... |.   ...         .+.+|+|++    =|+||. +++.++. ....+|
T Consensus         1 M~mk-~rILIVDDd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~~~~pdlillD~~mp~~~G~~l~~~ir~-~~~~~p   78 (137)
T 3cfy_A            1 MSLR-PRVLLVEDSTSLAILYKQYVKDEPYDIFHVETGRDAIQFIERSKPQLIILDLKLPDMSGEDVLDWINQ-NDIPTS   78 (137)
T ss_dssp             --CC-CEEEEECSCTTHHHHHHHHTTTSSSEEEEESSHHHHHHHHHHHCCSEEEECSBCSSSBHHHHHHHHHH-TTCCCE
T ss_pred             CCCC-CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHH-HCCCCC
T ss_conf             9999-76999979999999999999987999999899999999998479999998389999988999999997-489984


Q ss_pred             EEEECC-------------CCCCCCCCCCCHHHHHHHHHHCCC
Q ss_conf             994153-------------433201044587899986642012
Q gi|254780754|r   63 IYGMNC-------------GSVGFLMNEYCIENLVERLSVAVE   92 (264)
Q Consensus        63 ilGIn~-------------G~lGFL~~~~~~~~~~~~l~~~~~   92 (264)
                      |+-+..             |--+||.-++..+.+...+.....
T Consensus        79 iI~lt~~~~~~~~~~~~~~Ga~dyl~KP~~~~~L~~~i~~~l~  121 (137)
T 3cfy_A           79 VIIATAHGSVDLAVNLIQKGAEDFLEKPINADRLKTSVALHLK  121 (137)
T ss_dssp             EEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
T ss_conf             8999877999999999867986899898999999999999999


No 110
>2nrr_A Uvrabc system protein C; UVRC, endonuclase, NER, hydrolase; 1.20A {Thermotoga maritima}
Probab=50.15  E-value=12  Score=16.53  Aligned_cols=64  Identities=14%  Similarity=0.230  Sum_probs=40.2

Q ss_pred             CEEEEEEECCCHHHHHHHHHHHHHCCCCCHHHCCEEEEECCCHHHHHHHHHHH--HCCCEEEEECCCC
Q ss_conf             50599995599899999999998707888455779999879548999999974--1287299415343
Q gi|254780754|r    5 IQKIHFKASNAKKAQEAYDKFVKIYGNSTSEEADVIVVLGGDGFMLQSFHQSK--EYDKPIYGMNCGS   70 (264)
Q Consensus         5 ~~ki~i~~~~~~~a~~~~~~l~~~~~~~~~~~~Dlii~iGGDGT~L~a~~~~~--~~~~PilGIn~G~   70 (264)
                      +.++.+-.+...+-..+.+-+.+++...  ..|||+++=||-|-+=.|.+.+.  ..++|++|+--+.
T Consensus        50 YR~f~i~~~~~dDy~~m~evl~RR~~~~--~lPDLilIDGGkgQL~~a~~~l~~~~~~i~~i~laK~~  115 (159)
T 2nrr_A           50 YRRYKIEQDHPDDYESIRTVVKRRYSKH--PLPNLLFVDGGIGQVNAAIEALKEIGKDCPVVGLAKKE  115 (159)
T ss_dssp             CEEEEC-----CHHHHHHHHHHHHHTTS--CCCSEEEESSCHHHHHHHHHHHHHTTCCCCEEEEC---
T ss_pred             HHHHCCCCCCCHHHHHHHHHHHHHHCCC--CCCCEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf             8885337778619999999999985679--99858998099899999999999849966312334521


No 111
>1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.10A {Thermus thermophilus} SCOP: d.159.1.6
Probab=50.05  E-value=12  Score=16.52  Aligned_cols=61  Identities=20%  Similarity=0.172  Sum_probs=39.3

Q ss_pred             CCCCCEEEEEEECCCH--HH-HHHHHHHHHHCCCCCHHHCCEEEEECCCH--------HHHHHHHHHHHCCCEEEEECCC
Q ss_conf             9876505999955998--99-99999999870788845577999987954--------8999999974128729941534
Q gi|254780754|r    1 MDRNIQKIHFKASNAK--KA-QEAYDKFVKIYGNSTSEEADVIVVLGGDG--------FMLQSFHQSKEYDKPIYGMNCG   69 (264)
Q Consensus         1 m~~~~~ki~i~~~~~~--~a-~~~~~~l~~~~~~~~~~~~Dlii~iGGDG--------T~L~a~~~~~~~~~PilGIn~G   69 (264)
                      |-|++++|..+++-.=  ++ +++.+...+       +++|+++..| |=        .+....+.+...++|++-|- |
T Consensus         1 ~~~~~~~i~~~~d~hg~~~ale~~l~~~~~-------~~~D~vv~~G-Dl~~~~~~~~~~~~~~~~l~~~~~pv~~v~-G   71 (228)
T 1uf3_A            1 MRRTVRYILATSNPMGDLEALEKFVKLAPD-------TGADAIALIG-NLMPKAAKSRDYAAFFRILSEAHLPTAYVP-G   71 (228)
T ss_dssp             CCCCCCEEEEEECCTTCHHHHHHHHTHHHH-------HTCSEEEEES-CSSCTTCCHHHHHHHHHHHGGGCSCEEEEC-C
T ss_pred             CCCCEEEEEEEECCCCCHHHHHHHHHHHHH-------HCCCEEEECC-CCCCCCCCCHHHHHHHHHHHCCCCCEEEEE-C
T ss_conf             987312999995688999999999998777-------2999999878-869998782999999997404577589996-8


Q ss_pred             C
Q ss_conf             3
Q gi|254780754|r   70 S   70 (264)
Q Consensus        70 ~   70 (264)
                      +
T Consensus        72 N   72 (228)
T 1uf3_A           72 P   72 (228)
T ss_dssp             T
T ss_pred             C
T ss_conf             9


No 112
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes}
Probab=50.03  E-value=12  Score=16.52  Aligned_cols=88  Identities=18%  Similarity=0.105  Sum_probs=50.9

Q ss_pred             CCCCCEEEEEEECCCHHHHHHHHHHHHHCCCC-----C---------HHHCCEEEE----ECCCH-HHHHHHHHHHHCCC
Q ss_conf             98765059999559989999999999870788-----8---------455779999----87954-89999999741287
Q gi|254780754|r    1 MDRNIQKIHFKASNAKKAQEAYDKFVKIYGNS-----T---------SEEADVIVV----LGGDG-FMLQSFHQSKEYDK   61 (264)
Q Consensus         1 m~~~~~ki~i~~~~~~~a~~~~~~l~~~~~~~-----~---------~~~~Dlii~----iGGDG-T~L~a~~~~~~~~~   61 (264)
                      |....+|+-++.+ .+...+......+.++..     +         ...+|+||+    =|.|| .+++.++.. ..++
T Consensus         3 ~~~~~mkVLiVDD-d~~~~~~l~~~L~~~g~~v~~a~~g~eAl~~~~~~~~DlvilD~~mP~~dG~el~~~ir~~-~~~~   80 (137)
T 3hdg_A            3 LREVALKILIVED-DTDAREWLSTIISNHFPEVWSAGDGEEGERLFGLHAPDVIITDIRMPKLGGLEMLDRIKAG-GAKP   80 (137)
T ss_dssp             ----CCCEEEECS-CHHHHHHHHHHHHTTCSCEEEESSHHHHHHHHHHHCCSEEEECSSCSSSCHHHHHHHHHHT-TCCC
T ss_pred             CCCCCCEEEEEEC-CHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHH-CCCC
T ss_conf             8780678999958-8999999999999679999998999999999874799899973789999899999999950-9899


Q ss_pred             EEEEECC-------------CCCCCCCCCCCHHHHHHHHHHC
Q ss_conf             2994153-------------4332010445878999866420
Q gi|254780754|r   62 PIYGMNC-------------GSVGFLMNEYCIENLVERLSVA   90 (264)
Q Consensus        62 PilGIn~-------------G~lGFL~~~~~~~~~~~~l~~~   90 (264)
                      ||+-+..             |--+||.-++.++++...+.+.
T Consensus        81 piI~lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~  122 (137)
T 3hdg_A           81 YVIVISAFSEMKYFIKAIELGVHLFLPKPIEPGRLMETLEDF  122 (137)
T ss_dssp             EEEECCCCCCHHHHHHHHHHCCSEECCSSCCHHHHHHHHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHH
T ss_conf             589998989999999999869989997989999999999999


No 113
>1t35_A Hypothetical protein YVDD, putative lysine decarboxylase; structural genomics target, NYSGXRC, PSI, protein structure initiative; 2.72A {Bacillus subtilis} SCOP: c.129.1.1
Probab=49.95  E-value=11  Score=16.74  Aligned_cols=60  Identities=15%  Similarity=0.138  Sum_probs=32.8

Q ss_pred             CEEEEEEECCC----HHHHHHHHHHHHHCCCCCHHHCCEEEEECC-C-HHHHHHHHHHHHCCCEEEEECCC
Q ss_conf             50599995599----899999999998707888455779999879-5-48999999974128729941534
Q gi|254780754|r    5 IQKIHFKASNA----KKAQEAYDKFVKIYGNSTSEEADVIVVLGG-D-GFMLQSFHQSKEYDKPIYGMNCG   69 (264)
Q Consensus         5 ~~ki~i~~~~~----~~a~~~~~~l~~~~~~~~~~~~Dlii~iGG-D-GT~L~a~~~~~~~~~PilGIn~G   69 (264)
                      ||++.++.+..    +.-.+.++++-+...+     ...-++.|| . |-|=.+++-+...+--+.||...
T Consensus         1 mk~I~Vf~gs~~~~~~~~~~~a~~lg~~La~-----~g~~lV~GGG~~GlM~ava~ga~~~gg~v~Gi~~~   66 (191)
T 1t35_A            1 MKTICVFAGSNPGGNEAYKRKAAELGVYMAE-----QGIGLVYGGSRVGLMGTIADAIMENGGTAIGVMPS   66 (191)
T ss_dssp             CCEEEEECCSSCCSSTHHHHHHHHHHHHHHH-----TTCEEEECCCCSHHHHHHHHHHHTTTCCEEEEEET
T ss_pred             CCEEEEECCCCCCCCCHHHHHHHHHHHHHHH-----CCCEEEECCCCHHHHHHHHHHHHHCCCCEEEECCH
T ss_conf             9779998547999696899999999999998-----79969989985889999998999759934320650


No 114
>2rk3_A Protein DJ-1; parkinson'S disease, THIJ, PFPI, chaperone, cytoplasm, disease mutation, nucleus, oncogene, oxidation, parkinson disease; 1.05A {Homo sapiens} PDB: 1pdv_A 1pdw_A 3cy6_A 1pe0_A 3cza_A 3cyf_A 2rk4_A 3cz9_A* 3ezg_A 3f71_A 1p5f_A 1ps4_A 1q2u_A 1soa_A 1ucf_A 2or3_A 3bwe_A 3b38_A 3b36_A 2rk6_A ...
Probab=49.63  E-value=12  Score=16.48  Aligned_cols=36  Identities=19%  Similarity=0.282  Sum_probs=29.2

Q ss_pred             HCCEEEEECCCH---------HHHHHHHHHHHCCCEEEEECCCCC
Q ss_conf             577999987954---------899999997412872994153433
Q gi|254780754|r   36 EADVIVVLGGDG---------FMLQSFHQSKEYDKPIYGMNCGSV   71 (264)
Q Consensus        36 ~~Dlii~iGGDG---------T~L~a~~~~~~~~~PilGIn~G~l   71 (264)
                      ++|++++.||-+         -+++.++.+...++|+.+|-.|..
T Consensus        66 ~yD~lvIpGG~~~~~~l~~~~~l~~~i~~~~~~~k~i~aiC~G~~  110 (197)
T 2rk3_A           66 PYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIATICAGPT  110 (197)
T ss_dssp             CCSEEEECCCHHHHHHHHHCHHHHHHHHHHHHTTCEEEEETTTHH
T ss_pred             CCEEEEECCCCCHHHHHCCCHHHHHHHHHHHHCCCEEEEECHHHH
T ss_conf             970999859970386744599999999998744968960071789


No 115
>2ywd_A Glutamine amidotransferase subunit PDXT; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.90A {Thermus thermophilus HB8}
Probab=49.17  E-value=12  Score=16.43  Aligned_cols=39  Identities=18%  Similarity=0.288  Sum_probs=23.9

Q ss_pred             CCHHHCCEEEEECCCHH-----------HHHHHHHHHHCCCEEEEECCCC
Q ss_conf             88455779999879548-----------9999999741287299415343
Q gi|254780754|r   32 STSEEADVIVVLGGDGF-----------MLQSFHQSKEYDKPIYGMNCGS   70 (264)
Q Consensus        32 ~~~~~~Dlii~iGGDGT-----------~L~a~~~~~~~~~PilGIn~G~   70 (264)
                      ++.+++|.+|.=||--+           .....+.....++|+|||=.|.
T Consensus        35 ~dl~~~d~lIlPGG~~~~~~~~l~~~~~~~~~~~~~~~~~~PiLGIClG~   84 (191)
T 2ywd_A           35 EHLEGLKALIVPGGESTTIGKLAREYGIEDEVRKRVEEGSLALFGTCAGA   84 (191)
T ss_dssp             GGGTTCSEEEECSSCHHHHHHHHHHTTHHHHHHHHHHTTCCEEEEETHHH
T ss_pred             HHHCCCCEEEECCCCHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEECHHH
T ss_conf             99607898999899668999987775786899999984799679975667


No 116
>1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase; HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1 PDB: 1i7q_B 1i7s_B*
Probab=49.14  E-value=7.6  Score=17.77  Aligned_cols=34  Identities=24%  Similarity=0.370  Sum_probs=23.7

Q ss_pred             HCCEEEEECCCHH------HHHHHHHHHHCCCEEEEECCCC
Q ss_conf             5779999879548------9999999741287299415343
Q gi|254780754|r   36 EADVIVVLGGDGF------MLQSFHQSKEYDKPIYGMNCGS   70 (264)
Q Consensus        36 ~~Dlii~iGGDGT------~L~a~~~~~~~~~PilGIn~G~   70 (264)
                      ++|.+|.-||.|.      ...... ....++|+|||-.|+
T Consensus        47 ~~dgiILsgGPg~p~~~~~~~~~~~-~~~~~iPiLGIC~G~   86 (192)
T 1i1q_B           47 KNPVLMLSPGPGVPSEAGCMPELLT-RLRGKLPIIGICLGH   86 (192)
T ss_dssp             SSEEEEECCCSSCGGGSTTHHHHHH-HHBTTBCEEEETHHH
T ss_pred             CCCEEEEECCCCCCCCCCCCHHHHH-HHHCCCCHHHHCHHH
T ss_conf             9696998199987143313379999-985699814538767


No 117
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=48.99  E-value=8.5  Score=17.47  Aligned_cols=40  Identities=28%  Similarity=0.402  Sum_probs=32.3

Q ss_pred             CCCCCHHHCCEEEEECCCHH-----HHHHHHHHHHCCCEEEEECC
Q ss_conf             07888455779999879548-----99999997412872994153
Q gi|254780754|r   29 YGNSTSEEADVIVVLGGDGF-----MLQSFHQSKEYDKPIYGMNC   68 (264)
Q Consensus        29 ~~~~~~~~~Dlii~iGGDGT-----~L~a~~~~~~~~~PilGIn~   68 (264)
                      +.+...++.|++|++.|==|     +-.-...+...++|++||..
T Consensus        31 W~d~~~~~a~vVIVL~G~yt~~s~WI~~EI~~A~~~~KPIIgV~p   75 (111)
T 1eiw_A           31 WRPATPEDADAVIVLAGLWGTRRDEILGAVDLARKSSKPIITVRP   75 (111)
T ss_dssp             EEECCSSSCSEEEEEGGGTTTSHHHHHHHHHHHTTTTCCEEEECC
T ss_pred             CCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEE
T ss_conf             120332559899999404446768999999999986998899981


No 118
>3fij_A LIN1909 protein; 11172J, uncharacterized protein, nysgrc, PSI-II, structural genomics, protein structure initiative; 2.30A {Listeria innocua}
Probab=48.93  E-value=12  Score=16.41  Aligned_cols=36  Identities=19%  Similarity=0.430  Sum_probs=25.4

Q ss_pred             HHCCEEEEECCC-----------------------HHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf             557799998795-----------------------489999999741287299415343
Q gi|254780754|r   35 EEADVIVVLGGD-----------------------GFMLQSFHQSKEYDKPIYGMNCGS   70 (264)
Q Consensus        35 ~~~Dlii~iGGD-----------------------GT~L~a~~~~~~~~~PilGIn~G~   70 (264)
                      +.+|-++.-||.                       -.-+...+.+...++|+|||-.|.
T Consensus        60 ~~~DGvll~GG~dv~p~~yg~~~~~~~~~~~~~Rd~~e~~li~~a~~~~~PilGIC~G~  118 (254)
T 3fij_A           60 SLVDGLLLTGGQDITPQLYLEEPSQEIGAYFPPRDSYEIALVRAALDAGKPIFAICRGM  118 (254)
T ss_dssp             HTCSEEEECCCSCCCGGGGTCCCCTTCCCCCHHHHHHHHHHHHHHHHTTCCEEEETHHH
T ss_pred             HHCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECHHH
T ss_conf             65694996588778755468778754588765568999999999998599889987518


No 119
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} PDB: 3dgf_C 3dge_C
Probab=47.77  E-value=13  Score=16.30  Aligned_cols=84  Identities=15%  Similarity=0.251  Sum_probs=48.5

Q ss_pred             EEEEEECCCHHHHHHHHHHHHHCCCC--------------CHHHCCEEEE----ECCCHH-HHHHHHHHH-HCCCEEEEE
Q ss_conf             59999559989999999999870788--------------8455779999----879548-999999974-128729941
Q gi|254780754|r    7 KIHFKASNAKKAQEAYDKFVKIYGNS--------------TSEEADVIVV----LGGDGF-MLQSFHQSK-EYDKPIYGM   66 (264)
Q Consensus         7 ki~i~~~~~~~a~~~~~~l~~~~~~~--------------~~~~~Dlii~----iGGDGT-~L~a~~~~~-~~~~PilGI   66 (264)
                      ||.++ ++++...+.........+-+              ....+|+++.    =|.||. +++..|... ..++||+.+
T Consensus         4 rILvV-DD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~pdliilD~~mP~~~G~el~~~ir~~~~~~~iPiI~l   82 (122)
T 3gl9_A            4 KVLLV-DDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKLSEFTPDLIVLXIMMPVMDGFTVLKKLQEKEEWKRIPVIVL   82 (122)
T ss_dssp             EEEEE-CSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHTTBCCSEEEECSCCSSSCHHHHHHHHHTSTTTTTSCEEEE
T ss_pred             CEEEE-ECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCCCCEEEE
T ss_conf             59999-69999999999999987999999899999999998379999985102899988999999983887899989998


Q ss_pred             CC-------------CCCCCCCCCCCHHHHHHHHHHCC
Q ss_conf             53-------------43320104458789998664201
Q gi|254780754|r   67 NC-------------GSVGFLMNEYCIENLVERLSVAV   91 (264)
Q Consensus        67 n~-------------G~lGFL~~~~~~~~~~~~l~~~~   91 (264)
                      ..             |--+||+-++..+++...+.+..
T Consensus        83 T~~~~~~~~~~a~~~G~~~yl~KP~~~~~L~~~v~~~L  120 (122)
T 3gl9_A           83 TAKGGEEDESLALSLGARKVMRKPFSPSQFIEEVKHLL  120 (122)
T ss_dssp             ESCCSHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHH
T ss_pred             ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH
T ss_conf             27999999999998799889979899999999999985


No 120
>1a9x_B Carbamoyl phosphate synthetase (small chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: c.8.3.1 c.23.16.1 PDB: 1bxr_B* 1ce8_B* 1jdb_C* 1cs0_B* 1m6v_B* 1c30_B* 1c3o_B* 1kee_B* 1t36_B*
Probab=47.09  E-value=12  Score=16.61  Aligned_cols=14  Identities=29%  Similarity=0.456  Sum_probs=7.1

Q ss_pred             EECCEEEEECCCCH
Q ss_conf             10350798226650
Q gi|254780754|r  150 LVCDGLVVSTPIGS  163 (264)
Q Consensus       150 ~~~DGvivSTptGS  163 (264)
                      +.-||+++|-.-|.
T Consensus       230 ~~pDgi~lS~GPG~  243 (379)
T 1a9x_B          230 MNPDGIFLSNGPGD  243 (379)
T ss_dssp             TCCSEEEECCCSBC
T ss_pred             CCCCEEEECCCCCC
T ss_conf             19998996699999


No 121
>3clh_A 3-dehydroquinate synthase; shikimate pathway, aromatic amino acid biosynthesis, DHQS, amino-acid biosynthesis, cytoplasm, lyase, NAD; HET: NAD; 2.40A {Helicobacter pylori}
Probab=46.65  E-value=14  Score=16.19  Aligned_cols=51  Identities=10%  Similarity=0.139  Sum_probs=33.3

Q ss_pred             HHHHHHHHHHHHCCCCCHHHCCEEEEECCCHHHHHHHHHHH---HCCCEEEEECC
Q ss_conf             99999999998707888455779999879548999999974---12872994153
Q gi|254780754|r   17 KAQEAYDKFVKIYGNSTSEEADVIVVLGGDGFMLQSFHQSK---EYDKPIYGMNC   68 (264)
Q Consensus        17 ~a~~~~~~l~~~~~~~~~~~~Dlii~iGGDGT~L~a~~~~~---~~~~PilGIn~   68 (264)
                      |+.+..+.+...+.+...+..|+++++|| |++.-.+..+.   .+++|++-|-+
T Consensus        66 Ks~~~~~~i~~~l~~~~~~r~~~viaiGG-G~v~D~agf~As~y~RGi~~i~iPT  119 (343)
T 3clh_A           66 KNFHSLERILNNAFEMQLNRHSLMIALGG-GVISDMVGFASSIYFRGIDFINIPT  119 (343)
T ss_dssp             CSHHHHHHHHHHHHHTTCCTTCEEEEEES-HHHHHHHHHHHHHBTTCCEEEEEEC
T ss_pred             CCHHHHHHHHHHHHHHCCCCCCEEEEECC-CHHHHHHHHHHHHHCCCCEEEECCC
T ss_conf             99999999999999818998662898279-4476699999998717913897586


No 122
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=46.56  E-value=14  Score=16.18  Aligned_cols=84  Identities=21%  Similarity=0.306  Sum_probs=49.9

Q ss_pred             EEEEEECCCHHHHHHHHHHHHHCCCCC--------------------HHHCCEEEE----ECCCH-HHHHHHHHHHHCCC
Q ss_conf             599995599899999999998707888--------------------455779999----87954-89999999741287
Q gi|254780754|r    7 KIHFKASNAKKAQEAYDKFVKIYGNST--------------------SEEADVIVV----LGGDG-FMLQSFHQSKEYDK   61 (264)
Q Consensus         7 ki~i~~~~~~~a~~~~~~l~~~~~~~~--------------------~~~~Dlii~----iGGDG-T~L~a~~~~~~~~~   61 (264)
                      |+- +.++++...++.+.+.+.++...                    .+.+|+++.    =|-|| .+++..|.-....+
T Consensus         4 rVL-iVDD~~~~~~~l~~~L~~~g~~~v~~a~~g~eal~~l~~~~~~~~~~dlil~D~~MP~~dG~~~~~~ir~~~~~~~   82 (133)
T 2r25_B            4 KIL-VVEDNHVNQEVIKRMLNLEGIENIELACDGQEAFDKVKELTSKGENYNMIFMDVQMPKVDGLLSTKMIRRDLGYTS   82 (133)
T ss_dssp             CEE-EECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHHHHHTCCCSEEEECSCCSSSCHHHHHHHHHHHSCCCS
T ss_pred             EEE-EEECCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCC
T ss_conf             899-9969899999999999986994899989999999999874213689888997388899889999999986489999


Q ss_pred             EEEEECC-------------CCCCCCCCCCCHHHHHHHHHHCC
Q ss_conf             2994153-------------43320104458789998664201
Q gi|254780754|r   62 PIYGMNC-------------GSVGFLMNEYCIENLVERLSVAV   91 (264)
Q Consensus        62 PilGIn~-------------G~lGFL~~~~~~~~~~~~l~~~~   91 (264)
                      ||+-+..             |--|||.-++..+++.+.|.+..
T Consensus        83 piI~lta~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~  125 (133)
T 2r25_B           83 PIVALTAFADDSNIKECLESGMNGFLSKPIKRPKLKTILTEFC  125 (133)
T ss_dssp             CEEEEESCCSHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHC
T ss_pred             CEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH
T ss_conf             2899974699999999998699889979899999999999999


No 123
>1u9c_A APC35852; structural genomics, protein structure initiative, MCSG, parkinson'S disease, chaperone, cysteine protease, PSI; 1.35A {Geobacillus stearothermophilus} SCOP: c.23.16.2
Probab=46.52  E-value=14  Score=16.18  Aligned_cols=44  Identities=25%  Similarity=0.335  Sum_probs=34.8

Q ss_pred             CCHHHCCEEEEECCCHHH---------HHHHHHHHHCCCEEEEECCCCCCCCC
Q ss_conf             884557799998795489---------99999974128729941534332010
Q gi|254780754|r   32 STSEEADVIVVLGGDGFM---------LQSFHQSKEYDKPIYGMNCGSVGFLM   75 (264)
Q Consensus        32 ~~~~~~Dlii~iGGDGT~---------L~a~~~~~~~~~PilGIn~G~lGFL~   75 (264)
                      .++++.|.|+.-||=|.+         .+.++.+...++|+-.|-.|-..++.
T Consensus        85 v~~~dydav~ipGG~g~~~~l~~~~~l~~li~~~~~~~k~iaaIChgp~~L~~  137 (224)
T 1u9c_A           85 DDAHGFDAIFLPGGHGTMFDFPDNETLQYVLQQFAEDGRIIAAVCHGPSGLVN  137 (224)
T ss_dssp             GGGSSCSEEEECCCTTHHHHSTTCHHHHHHHHHHHHTTCEEEEETTGGGGGTT
T ss_pred             CCHHHCCEEEECCCCCHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCHHHHHC
T ss_conf             79756898995898307775211589999999999759979996123000111


No 124
>3cg4_A Response regulator receiver domain protein (CHEY- like); structural genomics, unknown function, uncharacterized protein; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=44.86  E-value=14  Score=16.02  Aligned_cols=91  Identities=13%  Similarity=0.231  Sum_probs=51.1

Q ss_pred             CCCCCEEEEEEECCCHHHHHHHHHHHHHCCC-----CCH---------HHCCEEEE----ECCCHH-HHHHHHHHH-HCC
Q ss_conf             9876505999955998999999999987078-----884---------55779999----879548-999999974-128
Q gi|254780754|r    1 MDRNIQKIHFKASNAKKAQEAYDKFVKIYGN-----STS---------EEADVIVV----LGGDGF-MLQSFHQSK-EYD   60 (264)
Q Consensus         1 m~~~~~ki~i~~~~~~~a~~~~~~l~~~~~~-----~~~---------~~~Dlii~----iGGDGT-~L~a~~~~~-~~~   60 (264)
                      |..+..+|.++. +++...+..+.+.+..+-     ...         ..+|+|+.    =|.||. +++.++.-. ...
T Consensus         3 ~~~~k~~VLiVD-D~~~~r~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~dliilD~~mP~~~G~el~~~ir~~~~~~~   81 (142)
T 3cg4_A            3 LAEHKGDVMIVD-DDAHVRIAVKTILSDAGFHIISADSGGQCIDLLKKGFSGVVLLDIMMPGMDGWDTIRAILDNSLEQG   81 (142)
T ss_dssp             ---CCCEEEEEC-SCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTCCCEEEEEESCCSSSCHHHHHHHHHHTTCCTT
T ss_pred             CCCCCCEEEEEE-CCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCC
T ss_conf             788999599997-9899999999999987999999899999999997179999998389999868999999985755689


Q ss_pred             CEEEEECC-------------CCCCCCCCCCCHHHHHHHHHHCCC
Q ss_conf             72994153-------------433201044587899986642012
Q gi|254780754|r   61 KPIYGMNC-------------GSVGFLMNEYCIENLVERLSVAVE   92 (264)
Q Consensus        61 ~PilGIn~-------------G~lGFL~~~~~~~~~~~~l~~~~~   92 (264)
                      +||+-+..             |-.+||+-+++.+++.+.+.....
T Consensus        82 ipiI~lT~~~~~~~~~~a~~~G~~dyl~KP~~~~~Ll~~v~~~l~  126 (142)
T 3cg4_A           82 IAIVMLTAKNAPDAKMIGLQEYVVDYITKPFDNEDLIEKTTFFMG  126 (142)
T ss_dssp             EEEEEEECTTCCCCSSTTGGGGEEEEEESSCCHHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
T ss_conf             959999788999999999986998899898999999999999999


No 125
>2p6p_A Glycosyl transferase; GT-B family, X-RAY-diffraction,urdamycina- biosynthesis; 1.88A {Streptomyces fradiae}
Probab=44.73  E-value=14  Score=16.00  Aligned_cols=31  Identities=13%  Similarity=-0.191  Sum_probs=15.8

Q ss_pred             HHCCEEEEECCCHHHHHHHHHHHHCCCEEEEECC
Q ss_conf             5577999987954899999997412872994153
Q gi|254780754|r   35 EEADVIVVLGGDGFMLQSFHQSKEYDKPIYGMNC   68 (264)
Q Consensus        35 ~~~Dlii~iGGDGT~L~a~~~~~~~~~PilGIn~   68 (264)
                      ..+|++++-..-..-..+++..   ..|......
T Consensus       106 ~~~d~v~~~~~~~~~~~~a~~~---~~~~~~~~~  136 (384)
T 2p6p_A          106 WRPDLIVGGTMSYVAPLLALHL---GVPHARQTW  136 (384)
T ss_dssp             HCCSEEEEETTCTHHHHHHHHH---TCCEEEECC
T ss_pred             CCCCEEEECCCCHHHHHHHHHH---CCCEEEEEC
T ss_conf             1996899577550899999994---998387512


No 126
>3gra_A Transcriptional regulator, ARAC family; transcription regulator, PSI-II, structural genomics, protein structure initiative; 2.30A {Pseudomonas putida KT2440}
Probab=44.30  E-value=15  Score=15.96  Aligned_cols=38  Identities=21%  Similarity=0.262  Sum_probs=30.0

Q ss_pred             CHHHCCEEEEECCC------HHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf             84557799998795------489999999741287299415343
Q gi|254780754|r   33 TSEEADVIVVLGGD------GFMLQSFHQSKEYDKPIYGMNCGS   70 (264)
Q Consensus        33 ~~~~~Dlii~iGGD------GT~L~a~~~~~~~~~PilGIn~G~   70 (264)
                      .....|++++.||.      ..++..++.......+|.+|-+|.
T Consensus        68 ~~~~~d~lvv~gg~~~~~~~~~l~~~Lr~~~~~g~~v~~ic~G~  111 (202)
T 3gra_A           68 ALKELDLLVVCGGLRTPLKYPELDRLLNDCAAHGMALGGLWNGA  111 (202)
T ss_dssp             GGTTCSEEEEECCTTCCSCCTTHHHHHHHHHHHTCEEEEETTHH
T ss_pred             HCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHCCEEEEECHHH
T ss_conf             26657799988988654469899999999887298785105788


No 127
>3hl0_A Maleylacetate reductase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 1.60A {Agrobacterium tumefaciens str}
Probab=43.98  E-value=15  Score=15.93  Aligned_cols=33  Identities=24%  Similarity=0.195  Sum_probs=23.2

Q ss_pred             HHCCEEEEECCCHHHHHHHHHHH-HCCCEEEEECC
Q ss_conf             55779999879548999999974-12872994153
Q gi|254780754|r   35 EEADVIVVLGGDGFMLQSFHQSK-EYDKPIYGMNC   68 (264)
Q Consensus        35 ~~~Dlii~iGGDGT~L~a~~~~~-~~~~PilGIn~   68 (264)
                      .++|+||.+|| |..+-+++... ..+.|.+-+-+
T Consensus        86 ~~~D~IiavGG-Gs~iD~aK~ia~~~~~~~i~~pt  119 (353)
T 3hl0_A           86 AGADCVVSLGG-GSTTGLGKAIALRTDAAQIVIPT  119 (353)
T ss_dssp             TTCSEEEEEES-HHHHHHHHHHHHHHCCEEEEEEC
T ss_pred             CCCCEEEEECC-CCCCCHHHHHHHCCCCCEEEEEC
T ss_conf             39988999588-63001334544136786577414


No 128
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, PSI-2, protein structure initiative; 2.00A {Desulfuromonas acetoxidans dsm 684}
Probab=43.82  E-value=15  Score=15.92  Aligned_cols=90  Identities=10%  Similarity=0.210  Sum_probs=54.1

Q ss_pred             CCEEEEEEECCCHHHHHHHHHHHHH-CCC---C---------CHHHCCEEEE----ECCCHH-HHHHHHHHH-HCCCEEE
Q ss_conf             6505999955998999999999987-078---8---------8455779999----879548-999999974-1287299
Q gi|254780754|r    4 NIQKIHFKASNAKKAQEAYDKFVKI-YGN---S---------TSEEADVIVV----LGGDGF-MLQSFHQSK-EYDKPIY   64 (264)
Q Consensus         4 ~~~ki~i~~~~~~~a~~~~~~l~~~-~~~---~---------~~~~~Dlii~----iGGDGT-~L~a~~~~~-~~~~Pil   64 (264)
                      +.+||.++.++....+-+...|.+. |..   .         ....+|+|+.    =+.||. +++.+|... ..++||+
T Consensus         7 ~~~rILiVDD~~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~~~~~~pdliilD~~mP~~dG~el~~~ir~~~~~~~iPiI   86 (147)
T 2zay_A            7 KWWRIMLVDTQLPALAASISALSQEGFDIIQCGNAIEAVPVAVKTHPHLIITEANMPKISGMDLFNSLKKNPQTASIPVI   86 (147)
T ss_dssp             -CEEEEEECTTGGGGHHHHHHHHHHTEEEEEESSHHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHTSTTTTTSCEE
T ss_pred             CCCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCCEE
T ss_conf             99889999799999999999999879999998999999999983799999985999999751899999848556897189


Q ss_pred             EEC-------------CCCCCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf             415-------------34332010445878999866420124
Q gi|254780754|r   65 GMN-------------CGSVGFLMNEYCIENLVERLSVAVEC   93 (264)
Q Consensus        65 GIn-------------~G~lGFL~~~~~~~~~~~~l~~~~~~   93 (264)
                      -+.             .|-.+||+-++..+++...+......
T Consensus        87 ~lS~~~~~~~~~~~~~~Ga~dyl~KP~~~~~L~~~i~~~l~~  128 (147)
T 2zay_A           87 ALSGRATAKEEAQLLDMGFIDFIAKPVNAIRLSARIKRVLKL  128 (147)
T ss_dssp             EEESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred             EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHH
T ss_conf             972689999999999879988997999999999999999998


No 129
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=42.67  E-value=16  Score=15.80  Aligned_cols=92  Identities=13%  Similarity=0.150  Sum_probs=53.7

Q ss_pred             CCCEEEEEEECCCHHHHHHHHHHHHHCCC----------------CCHHHCCEEEEE----CCCHH-HHHHHHHHHHCCC
Q ss_conf             76505999955998999999999987078----------------884557799998----79548-9999999741287
Q gi|254780754|r    3 RNIQKIHFKASNAKKAQEAYDKFVKIYGN----------------STSEEADVIVVL----GGDGF-MLQSFHQSKEYDK   61 (264)
Q Consensus         3 ~~~~ki~i~~~~~~~a~~~~~~l~~~~~~----------------~~~~~~Dlii~i----GGDGT-~L~a~~~~~~~~~   61 (264)
                      .+.+++.++.+..--+.-+..-|......                .....+|+++.=    +.||- .+.........+.
T Consensus         5 ~~~~~VllvdD~~l~~~~L~~~Le~~~~~~~~v~~~~~~~~~~~~~~~~~~dlvl~D~~~~~~~~~~~~~~~~~~~~p~~   84 (225)
T 3klo_A            5 ENKLNVRMLSDVCMQSRLLKEALESKLPLALEITPFSELWLEENKPESRSIQMLVIDYSRISDDVLTDYSSFKHISCPDA   84 (225)
T ss_dssp             CSSEEEEEESCCSHHHHHHHHHHHHHSSEEEEEECGGGHHHHTTCSGGGGCCEEEEEGGGCCHHHHHHHHHHHHHHCTTC
T ss_pred             CCCCEEEEEECCHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCC
T ss_conf             99998999828799999999999478996499997576899986244258888997236899736999999999758998


Q ss_pred             EEEEECC-------------CCCCCCCCCCCHHHHHHHHHHCCCCC
Q ss_conf             2994153-------------43320104458789998664201243
Q gi|254780754|r   62 PIYGMNC-------------GSVGFLMNEYCIENLVERLSVAVECT   94 (264)
Q Consensus        62 PilGIn~-------------G~lGFL~~~~~~~~~~~~l~~~~~~~   94 (264)
                      |++-++.             |--||+..+.+.+.+.+++..+..+.
T Consensus        85 ~vivlt~~~~~~~~~~~~~~Ga~g~l~K~~~~~~L~~ai~~v~~G~  130 (225)
T 3klo_A           85 KEVIINCPQDIEHKLLFKWNNLAGVFYIDDDMDTLIKGMSKILQDE  130 (225)
T ss_dssp             EEEEEEECTTCCHHHHTTSTTEEEEEETTCCHHHHHHHHHHHHTTC
T ss_pred             EEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCC
T ss_conf             4999961566899999998699599977999999999999984797


No 130
>3n7t_A Macrophage binding protein; seattle structural genomics center for infectious disease, S macrophage, pathogenic fungus, coccidioidomycosis; 2.10A {Coccidioides immitis}
Probab=41.25  E-value=16  Score=15.67  Aligned_cols=46  Identities=15%  Similarity=0.190  Sum_probs=36.5

Q ss_pred             CCCCHHHCCEEEEECCCHHHH---------HHHHHHHHCCCEEEEECCCCCCCCC
Q ss_conf             788845577999987954899---------9999974128729941534332010
Q gi|254780754|r   30 GNSTSEEADVIVVLGGDGFML---------QSFHQSKEYDKPIYGMNCGSVGFLM   75 (264)
Q Consensus        30 ~~~~~~~~Dlii~iGGDGT~L---------~a~~~~~~~~~PilGIn~G~lGFL~   75 (264)
                      .+.+.++.|.|+.-||-|.+-         +.++.+...++||-.|=.|-.+++.
T Consensus        99 ~~v~~~~ydav~~pGG~g~~~dl~~~~~l~~li~~~~~~~k~vaaICHGpa~L~~  153 (247)
T 3n7t_A           99 GDLAPHDYGLMFVCGGHGALYDFPHAKHLQNIAQDIYKRGGVIGAVCHGPAMLPG  153 (247)
T ss_dssp             GGSCGGGCSEEEECCSTTHHHHGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGGG
T ss_pred             HHCCHHHCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEECHHHHHHHH
T ss_conf             7789867788994798756760244078999999999649909997416799874


No 131
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*
Probab=41.25  E-value=16  Score=15.67  Aligned_cols=32  Identities=16%  Similarity=0.027  Sum_probs=18.5

Q ss_pred             HCCEEEEECCCHHHHHHHHHHHHCCCEEEEECC
Q ss_conf             577999987954899999997412872994153
Q gi|254780754|r   36 EADVIVVLGGDGFMLQSFHQSKEYDKPIYGMNC   68 (264)
Q Consensus        36 ~~Dlii~iGGDGT~L~a~~~~~~~~~PilGIn~   68 (264)
                      .+|.++..|++-.+.. ........+|++.+..
T Consensus        96 ~~~~i~~~~~~~~~~~-~~~a~~~~ip~~~~~~  127 (364)
T 1f0k_A           96 KPDVVLGMGGYVSGPG-GLAAWSLGIPVVLHEQ  127 (364)
T ss_dssp             CCSEEEECSSTTHHHH-HHHHHHTTCCEEEEEC
T ss_pred             CCCEEEEECCCCCCHH-HHHHHHCCCCEEEEEE
T ss_conf             7777998467556869-9997535887899851


No 132
>2ywj_A Glutamine amidotransferase subunit PDXT; uncharacterized conserved protein, structural genomics, NPPSFA; 1.90A {Methanocaldococcus jannaschii DSM2661}
Probab=41.20  E-value=16  Score=15.66  Aligned_cols=39  Identities=23%  Similarity=0.394  Sum_probs=25.7

Q ss_pred             CCHHHCCEEEEECCCHHH-HHH------HHHHHHCCCEEEEECCCC
Q ss_conf             884557799998795489-999------999741287299415343
Q gi|254780754|r   32 STSEEADVIVVLGGDGFM-LQS------FHQSKEYDKPIYGMNCGS   70 (264)
Q Consensus        32 ~~~~~~Dlii~iGGDGT~-L~a------~~~~~~~~~PilGIn~G~   70 (264)
                      ++.+++|.+|.-||-..- -+.      .+.+...++|+|||=.|.
T Consensus        33 ~~l~~~d~lIlpGG~~~~~~~~~~~~~~~~~~~~~~~PiLGIClG~   78 (186)
T 2ywj_A           33 EDLEGIDALIIPGGESTAIGKLMKKYGLLEKIKNSNLPILGTCAGM   78 (186)
T ss_dssp             GGGTTCSEEEECCSCHHHHHHHHHHTTHHHHHHTCCCCEEEETHHH
T ss_pred             HHHHCCCEEEECCCCHHHHHHHCCCCCHHHHHHHCCCCEEEECHHH
T ss_conf             9971799899999871788876441663899997799889986746


No 133
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=39.02  E-value=18  Score=15.45  Aligned_cols=87  Identities=10%  Similarity=0.167  Sum_probs=46.3

Q ss_pred             CCCCCEE--EEEEECCCHHHHHHHHHHHHHCCC-------CC---------------HHHCCEEEEE----CCCHH-HHH
Q ss_conf             9876505--999955998999999999987078-------88---------------4557799998----79548-999
Q gi|254780754|r    1 MDRNIQK--IHFKASNAKKAQEAYDKFVKIYGN-------ST---------------SEEADVIVVL----GGDGF-MLQ   51 (264)
Q Consensus         1 m~~~~~k--i~i~~~~~~~a~~~~~~l~~~~~~-------~~---------------~~~~Dlii~i----GGDGT-~L~   51 (264)
                      |+....+  |- +.++++...+......+.++.       .+               ...+|+|++=    |.||. +++
T Consensus         1 m~~~~~~~~IL-iVDD~~~~~~~l~~~L~~~g~~~~v~~a~~g~eAl~~l~~~~~~~~~~~dliilD~~mP~~~G~el~~   79 (143)
T 2qvg_A            1 MSLAADKVDIL-YLEDDEVDIQSVERVFHKISSLIKIEIAKSGNQALDMLYGRNKENKIHPKLILLDINIPKMNGIEFLK   79 (143)
T ss_dssp             ------CCSEE-EECCCHHHHHHHHHHHHHHCTTCCEEEESSHHHHHHHHHTCTTCCCCCCSEEEEETTCTTSCHHHHHH
T ss_pred             CCCCCCCCEEE-EEECCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCHHHHH
T ss_conf             99888899899-99799999999999999769984999989999999999841233037987899648788997279999


Q ss_pred             HHHHHH-HCCCEEEEECC-------------CCCCCCCCCCCHHHHHHHHH
Q ss_conf             999974-12872994153-------------43320104458789998664
Q gi|254780754|r   52 SFHQSK-EYDKPIYGMNC-------------GSVGFLMNEYCIENLVERLS   88 (264)
Q Consensus        52 a~~~~~-~~~~PilGIn~-------------G~lGFL~~~~~~~~~~~~l~   88 (264)
                      ..|... ..++|++-+..             |--+||.-++..+++.+.+.
T Consensus        80 ~ir~~~~~~~ipiI~lS~~~~~~~~~~a~~~G~~~~l~KPv~~~~ll~~~~  130 (143)
T 2qvg_A           80 ELRDDSSFTDIEVFVLTAAYTSKDKLAFESLNIRGHLIKPLDYGEAIKLFW  130 (143)
T ss_dssp             HHTTSGGGTTCEEEEEESCCCHHHHHHHTTTTCCEEEESSCCHHHHHHHHH
T ss_pred             HHHHCCCCCCCEEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHH
T ss_conf             998577779991999978899999999998799899989799999999999


No 134
>3ewn_A THIJ/PFPI family protein; monomer, PSI-II, nysgrc, structural genomics, protein structure initiative; 1.65A {Pseudomonas syringae PV}
Probab=38.96  E-value=18  Score=15.44  Aligned_cols=36  Identities=22%  Similarity=0.253  Sum_probs=27.2

Q ss_pred             HHCCEEEEECCCH-H--------HHHHHHHHHHCCCEEEEECCCC
Q ss_conf             5577999987954-8--------9999999741287299415343
Q gi|254780754|r   35 EEADVIVVLGGDG-F--------MLQSFHQSKEYDKPIYGMNCGS   70 (264)
Q Consensus        35 ~~~Dlii~iGGDG-T--------~L~a~~~~~~~~~PilGIn~G~   70 (264)
                      ++.|++++.||.. +        ++..++.......++.+|-+|.
T Consensus        83 ~~~d~lvvpGG~~~~~~~~~~~~l~~~Lr~~~~~g~~i~aiCtG~  127 (253)
T 3ewn_A           83 RDLTVLFAPGGTDGTLAAASDAETLAFMADRGARAKYITSVCSGS  127 (253)
T ss_dssp             SSCSEEEECCBSHHHHHHTTCHHHHHHHHHHHTTCSEEEEETTHH
T ss_pred             CCCEEEEECCCCCCHHHHCCCHHHHHHHHHHHHCCCEEECCCCCC
T ss_conf             568799979986214232269999999998623165442367652


No 135
>1rrv_A Glycosyltransferase GTFD; GT-B, rossmann fold; HET: DVV TYD; 2.00A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=38.78  E-value=18  Score=15.43  Aligned_cols=29  Identities=10%  Similarity=0.176  Sum_probs=13.3

Q ss_pred             HCCEEEEECCCHHHHHHHHHHHHCCCEEE
Q ss_conf             57799998795489999999741287299
Q gi|254780754|r   36 EADVIVVLGGDGFMLQSFHQSKEYDKPIY   64 (264)
Q Consensus        36 ~~Dlii~iGGDGT~L~a~~~~~~~~~Pil   64 (264)
                      ..+..+++..|.....+........+|..
T Consensus        94 ~~~~~~vv~~~~~~~~~~~~a~~~~~~~~  122 (416)
T 1rrv_A           94 GCAAVVAVGDLAAATGVRSVAEKLGLPFF  122 (416)
T ss_dssp             TCSEEEEEECHHHHHHHHHHHHHHTCCEE
T ss_pred             HCCCEEEEEECCHHHHHHHHHHHHCCCCC
T ss_conf             28980999948415699999998189853


No 136
>2qip_A Protein of unknown function VPA0982; APC85975, structural genomics, PSI-2, protein structure initiative; 1.48A {Vibrio parahaemolyticus rimd 2210633}
Probab=37.91  E-value=18  Score=15.34  Aligned_cols=33  Identities=18%  Similarity=0.390  Sum_probs=25.7

Q ss_pred             HHCCEEEEECCCHHHHHHHHHHHH-CCCEEEEEC
Q ss_conf             557799998795489999999741-287299415
Q gi|254780754|r   35 EEADVIVVLGGDGFMLQSFHQSKE-YDKPIYGMN   67 (264)
Q Consensus        35 ~~~Dlii~iGGDGT~L~a~~~~~~-~~~PilGIn   67 (264)
                      ++.|.+|.+.|||-|..+++.... .++.|+++.
T Consensus       107 ~~~d~~vLvSgDsDf~p~v~~lr~~~gk~V~v~~  140 (165)
T 2qip_A          107 PDVDRVILVSGDGDFSLLVERIQQRYNKKVTVYG  140 (165)
T ss_dssp             GGCSEEEEECCCGGGHHHHHHHHHHHCCEEEEEE
T ss_pred             CCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEEE
T ss_conf             7689899995776289999999985897899997


No 137
>2a4x_A Mitomycin-binding protein; ALFA/beta protein, mitomycin C-binding protein, bleomycin A2, antimicrobial protein; HET: BLM; 1.40A {Streptomyces caespitosus} SCOP: d.32.1.2 PDB: 2a4w_A* 1kmz_A 1kll_A*
Probab=37.47  E-value=19  Score=15.30  Aligned_cols=95  Identities=12%  Similarity=0.085  Sum_probs=48.8

Q ss_pred             CCCCCEEEEEEECCCHHHHHHHHHHHHHCCCCCHHHCCEEEEECCCHH-HH----HHHHHHHHCCCEEEEECCCCCCCCC
Q ss_conf             987650599995599899999999998707888455779999879548-99----9999974128729941534332010
Q gi|254780754|r    1 MDRNIQKIHFKASNAKKAQEAYDKFVKIYGNSTSEEADVIVVLGGDGF-ML----QSFHQSKEYDKPIYGMNCGSVGFLM   75 (264)
Q Consensus         1 m~~~~~ki~i~~~~~~~a~~~~~~l~~~~~~~~~~~~Dlii~iGGDGT-~L----~a~~~~~~~~~PilGIn~G~lGFL~   75 (264)
                      |.-++.-+.+..++.+++.+.++.|--... ...+..+.+....++|+ ++    ...........+-.+-+.-+++|++
T Consensus         1 M~~rl~hi~l~V~Dl~~s~~FY~~LG~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~   79 (138)
T 2a4x_A            1 MSARISLFAVVVEDMAKSLEFYRKLGVEIP-AEADSAPHTEAVLDGGIRLAWDTVETVRSYDPEWQAPTGGHRFAIAFEF   79 (138)
T ss_dssp             -CCEEEEEEEEESCHHHHHHHHHTTTCCCC-GGGGGCSEEEEECTTSCEEEEEEHHHHHHHCTTCCCCBSSCSEEEEEEC
T ss_pred             CCCEEEEEEEEECCHHHHHHHHHHHCCCCE-ECCCCEEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEE
T ss_conf             987588999992999999999998579540-0101003579981996599960543222357766777665734688995


Q ss_pred             CCCCHHHHHHHHHHCCCCCCCEE
Q ss_conf             44587899986642012432034
Q gi|254780754|r   76 NEYCIENLVERLSVAVECTFHPL   98 (264)
Q Consensus        76 ~~~~~~~~~~~l~~~~~~~~~~~   98 (264)
                        .+.+++.+.+.++........
T Consensus        80 --~~v~dl~~~~~~l~~~G~~~~  100 (138)
T 2a4x_A           80 --PDTASVDKKYAELVDAGYEGH  100 (138)
T ss_dssp             --SSHHHHHHHHHHHHHTTCCEE
T ss_pred             --CCCHHHHHHHHHHHHCCCEEE
T ss_conf             --220132345445775595286


No 138
>1iir_A Glycosyltransferase GTFB; rossmann fold; 1.80A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=36.85  E-value=19  Score=15.23  Aligned_cols=32  Identities=13%  Similarity=0.093  Sum_probs=13.9

Q ss_pred             HHCCEEEEECCCHHHHHHHHHHHHCCCEEEEE
Q ss_conf             55779999879548999999974128729941
Q gi|254780754|r   35 EEADVIVVLGGDGFMLQSFHQSKEYDKPIYGM   66 (264)
Q Consensus        35 ~~~Dlii~iGGDGT~L~a~~~~~~~~~PilGI   66 (264)
                      +.+|.+++.+..-..+-+...+....+|..-.
T Consensus        92 ~~~~~~v~~~~~~~~~~~~~~a~~~~~~~~~~  123 (415)
T 1iir_A           92 EGCAAVVTTGLLAAAIGVRSVAEKLGIPYFYA  123 (415)
T ss_dssp             TTCSEEEEESCHHHHHHHHHHHHHHTCCEEEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHHCCCCCCC
T ss_conf             47995999054413769999999939984035


No 139
>3ca8_A Protein YDCF; two domains, alpha/beta fold, helix bundle, structural genomics, structure 2 function project, S2F, unknown function; 1.80A {Escherichia coli K12}
Probab=36.78  E-value=19  Score=15.23  Aligned_cols=43  Identities=14%  Similarity=0.347  Sum_probs=30.1

Q ss_pred             CCCHHHCCEEEEECCC--HHHHHHHHHHHHCCCEEEEECCCCCCCCC
Q ss_conf             8884557799998795--48999999974128729941534332010
Q gi|254780754|r   31 NSTSEEADVIVVLGGD--GFMLQSFHQSKEYDKPIYGMNCGSVGFLM   75 (264)
Q Consensus        31 ~~~~~~~Dlii~iGGD--GT~L~a~~~~~~~~~PilGIn~G~lGFL~   75 (264)
                      ...+..+|+||++||.  .+...|++.+.....|++ | +|..|..+
T Consensus        31 ~~~p~~aD~IVvlG~~~l~~~~~A~~L~~~g~a~li-i-sGG~G~~T   75 (266)
T 3ca8_A           31 GEVPYQADCVILAGNAVMPTIDAACKIARDQQIPLL-I-SGGIGHST   75 (266)
T ss_dssp             TTCCCCCSEEEEESCCCHHHHHHHHHHHHHHTCCEE-E-ECCSSTTH
T ss_pred             CCCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCEE-E-ECCCCCCC
T ss_conf             678889998998899821899999999980599889-7-36987553


No 140
>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, protein structure initiative NDRT; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*
Probab=36.64  E-value=19  Score=15.21  Aligned_cols=34  Identities=9%  Similarity=0.146  Sum_probs=26.2

Q ss_pred             HHCCEEEEE--------CCCHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf             557799998--------79548999999974128729941534
Q gi|254780754|r   35 EEADVIVVL--------GGDGFMLQSFHQSKEYDKPIYGMNCG   69 (264)
Q Consensus        35 ~~~Dlii~i--------GGDGT~L~a~~~~~~~~~PilGIn~G   69 (264)
                      ..+|++|++        -..||....-. +...++||++...+
T Consensus        66 ~~~D~via~Ld~f~g~~~D~GT~~EiG~-A~algKPVv~~~~d  107 (161)
T 2f62_A           66 KDCDAVIADLSPFRGHEPDCGTAFEVGC-AAALNKMVLTFTSD  107 (161)
T ss_dssp             HHCSEEEEECCCCSSSSCCHHHHHHHHH-HHHTTCEEEEECSC
T ss_pred             HHCCEEEEEECCCCCCCCCCCHHHHHHH-HHHCCCEEEEEECC
T ss_conf             8799999992377799999888999999-99879959999667


No 141
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=36.47  E-value=19  Score=15.20  Aligned_cols=89  Identities=8%  Similarity=0.156  Sum_probs=48.1

Q ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHCCCC----------------CHHHCCEEEEE----C-CCHHHH-HHHHHHH-HCC
Q ss_conf             65059999559989999999999870788----------------84557799998----7-954899-9999974-128
Q gi|254780754|r    4 NIQKIHFKASNAKKAQEAYDKFVKIYGNS----------------TSEEADVIVVL----G-GDGFML-QSFHQSK-EYD   60 (264)
Q Consensus         4 ~~~ki~i~~~~~~~a~~~~~~l~~~~~~~----------------~~~~~Dlii~i----G-GDGT~L-~a~~~~~-~~~   60 (264)
                      +|++--.+.++++-..+..+...+.++..                ..+.+|+|++=    + .||.-+ +..+... ..+
T Consensus         2 ~~~~~ILiVDD~~~~r~~l~~~L~~~G~~~v~~a~~g~eal~~l~~~~~~dlii~D~~mP~~~~g~~l~~~ir~~~~~~~   81 (140)
T 3lua_A            2 SLDGTVLLIDYFEYEREKTKIIFDNIGEYDFIEVENLKKFYSIFKDLDSITLIIMDIAFPVEKEGLEVLSAIRNNSRTAN   81 (140)
T ss_dssp             -CCCEEEEECSCHHHHHHHHHHHHHHCCCEEEEECSHHHHHTTTTTCCCCSEEEECSCSSSHHHHHHHHHHHHHSGGGTT
T ss_pred             CCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCC
T ss_conf             99997999949999999999999867990899989999999999738998599986899999988899998764424689


Q ss_pred             CEEEEECC-------------CCCCCCCCCCCHHHHHHHHHHCCC
Q ss_conf             72994153-------------433201044587899986642012
Q gi|254780754|r   61 KPIYGMNC-------------GSVGFLMNEYCIENLVERLSVAVE   92 (264)
Q Consensus        61 ~PilGIn~-------------G~lGFL~~~~~~~~~~~~l~~~~~   92 (264)
                      +||+.+..             |--+||.-++..+.+...+.....
T Consensus        82 ~piI~lT~~~~~~~~~~~~~~G~~d~l~KP~~~~~L~~~i~~~L~  126 (140)
T 3lua_A           82 TPVIIATKSDNPGYRHAALKFKVSDYILKPYPTKRLENSVRSVLK  126 (140)
T ss_dssp             CCEEEEESCCCHHHHHHHHHSCCSEEEESSCCTTHHHHHHHHHHC
T ss_pred             CCEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
T ss_conf             988998279999999999986998999898999999999999999


No 142
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=36.16  E-value=20  Score=15.17  Aligned_cols=65  Identities=12%  Similarity=0.239  Sum_probs=36.7

Q ss_pred             CCCCC--EEEEEEECCCHHHHHHHHHHHHHCCCC--------------CHHHCCEEEE----ECCCH-HHHHHHHHHHHC
Q ss_conf             98765--059999559989999999999870788--------------8455779999----87954-899999997412
Q gi|254780754|r    1 MDRNI--QKIHFKASNAKKAQEAYDKFVKIYGNS--------------TSEEADVIVV----LGGDG-FMLQSFHQSKEY   59 (264)
Q Consensus         1 m~~~~--~ki~i~~~~~~~a~~~~~~l~~~~~~~--------------~~~~~Dlii~----iGGDG-T~L~a~~~~~~~   59 (264)
                      |..-+  +|+-++.++..... ......+..+..              ....+|++++    =|.|| .+++..|.. ..
T Consensus         1 m~~pl~g~kILiVDD~~~~r~-~l~~~L~~~g~~v~~a~~g~~Al~~l~~~~~dlvi~D~~mP~~dG~~~~~~ir~~-~~   78 (130)
T 3eod_A            1 MTQPLVGKQILIVEDEQVFRS-LLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLKLLEHIRNR-GD   78 (130)
T ss_dssp             --CTTTTCEEEEECSCHHHHH-HHHHHHHHTTCEEEEESCHHHHHHHHTTCCCSEEEECCC-----CHHHHHHHHHT-TC
T ss_pred             CCCCCCCCEEEEEECCHHHHH-HHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEHHHHCCCCCCHHHHHHHHHHH-CC
T ss_conf             969889998999969899999-9999999889999998999999999852898874574217999899999999960-98


Q ss_pred             CCEEEEEC
Q ss_conf             87299415
Q gi|254780754|r   60 DKPIYGMN   67 (264)
Q Consensus        60 ~~PilGIn   67 (264)
                      ++|++-+.
T Consensus        79 ~~piI~lt   86 (130)
T 3eod_A           79 QTPVLVIS   86 (130)
T ss_dssp             CCCEEEEE
T ss_pred             CCCEEEEE
T ss_conf             99899998


No 143
>1e0t_A Pyruvate kinase, PK; phosphotransferase, glycolysis, allostery; 1.8A {Escherichia coli} SCOP: b.58.1.1 c.1.12.1 c.49.1.1 PDB: 1pky_A 1e0u_A
Probab=35.42  E-value=20  Score=15.09  Aligned_cols=52  Identities=19%  Similarity=0.109  Sum_probs=35.8

Q ss_pred             EEEECCEEEEECCCCHHHHHHHCCCEEEEECCCEEEEECCC--CCCHHHHH---HCCCCCC
Q ss_conf             12103507982266504467522981774088605863035--43301111---0027884
Q gi|254780754|r  148 PELVCDGLVVSTPIGSTAYNFSALGPILPLESRHLLLTPVS--PFKPRRWH---GAILPND  203 (264)
Q Consensus       148 ~~~~~DGvivSTptGSTAY~lSaGGpIv~p~~~~~~itpI~--p~~l~~~r---plVl~~~  203 (264)
                      +...++.+++-|-+|.||..+|.--|    ..+.+.+||--  ...++.++   |++++..
T Consensus       367 ~~~~AkaIvv~T~SG~tA~~vS~~RP----~~PIiavT~~~~~~r~L~L~~GV~p~~~~~~  423 (470)
T 1e0t_A          367 EKLDAPLIVVATQGGKSARAVRKYFP----DATILALTTNEKTAHQLVLSKGVVPQLVKEI  423 (470)
T ss_dssp             HHTTCSBEEEECSSSHHHHHHHTTCC----SSBEEEEESCHHHHHHGGGSTTEEEEECSCC
T ss_pred             HHCCCCEEEEECCCHHHHHHHHHHCC----CCCEEEECCCHHHHHHHHCCCCEEEEEECCC
T ss_conf             74077779999597189999983597----9999998898899988643077599980888


No 144
>2a33_A Hypothetical protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT2G37210; 1.95A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4o_A
Probab=35.05  E-value=20  Score=15.06  Aligned_cols=63  Identities=11%  Similarity=0.044  Sum_probs=32.7

Q ss_pred             CCCEEEEEEECC----CHHHHHHHHHHHHHCCCCCHHHCCEEEEECCCHHHHHH-HHHHHHCCCEEEEECCC
Q ss_conf             765059999559----98999999999987078884557799998795489999-99974128729941534
Q gi|254780754|r    3 RNIQKIHFKASN----AKKAQEAYDKFVKIYGNSTSEEADVIVVLGGDGFMLQS-FHQSKEYDKPIYGMNCG   69 (264)
Q Consensus         3 ~~~~ki~i~~~~----~~~a~~~~~~l~~~~~~~~~~~~Dlii~iGGDGT~L~a-~~~~~~~~~PilGIn~G   69 (264)
                      .++||+.++.+.    .+.-.+.++++-+.+.+...    -+|.=||.+-+..| ++-+...+-.+.||...
T Consensus        11 ~~~k~V~VF~gs~~~~~~~~~~~A~~Lg~~La~~g~----~lV~GGG~~GlMga~a~g~~~~gg~viGi~~~   78 (215)
T 2a33_A           11 SKFRRICVFCGSSQGKKSSYQDAAVDLGNELVSRNI----DLVYGGGSIGLMGLVSQAVHDGGRHVIGIIPK   78 (215)
T ss_dssp             CSCSEEEEECCSSCCSSHHHHHHHHHHHHHHHHTTC----EEEECCCSSHHHHHHHHHHHHTTCCEEEEEES
T ss_pred             CCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCC----EEEECCCHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf             368539998867899597899999999999998799----59989975899999998998569952354565


No 145
>3ot1_A 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme; csgid, structural genomics; HET: MSE CSX; 1.16A {Vibrio cholerae o1 biovar el tor}
Probab=34.74  E-value=21  Score=15.02  Aligned_cols=39  Identities=18%  Similarity=0.248  Sum_probs=27.0

Q ss_pred             CHHHCCEEEEECCCHH---------HHHHHHHHHHCCCEEEEECCCCC
Q ss_conf             8455779999879548---------99999997412872994153433
Q gi|254780754|r   33 TSEEADVIVVLGGDGF---------MLQSFHQSKEYDKPIYGMNCGSV   71 (264)
Q Consensus        33 ~~~~~Dlii~iGGDGT---------~L~a~~~~~~~~~PilGIn~G~l   71 (264)
                      ...++|++++.||.|.         ++..++.+.....++.++.+|-.
T Consensus        68 ~~~d~d~liipGg~~~~~~l~~~~~l~~~lr~~~~~~~~i~a~~~~~~  115 (208)
T 3ot1_A           68 SAEAFDALALPGGVGGAQAFADSTALLALIDAFSQQGKLVAAICATPA  115 (208)
T ss_dssp             CGGGCSEEEECCCHHHHHHHHTCHHHHHHHHHHHHTTCEEEEETTHHH
T ss_pred             CCCCCEEEEECCCCCHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHH
T ss_conf             702427998167775576650599999999987542762000346888


No 146
>1dc7_A NTRC, nitrogen regulation protein; receiver domain, phosphorylation, signal transduction, conformational rearrangement; NMR {Salmonella typhimurium} SCOP: c.23.1.1 PDB: 1j56_A 1krw_A 1krx_A 1ntr_A 1dc8_A*
Probab=34.42  E-value=13  Score=16.24  Aligned_cols=85  Identities=18%  Similarity=0.230  Sum_probs=50.0

Q ss_pred             EEEEEECCCHHHHHHHHHHHHH-CCC------------CCHHHCCEEEE----ECCCHH-HHHHHHHHHHCCCEEEEEC-
Q ss_conf             5999955998999999999987-078------------88455779999----879548-9999999741287299415-
Q gi|254780754|r    7 KIHFKASNAKKAQEAYDKFVKI-YGN------------STSEEADVIVV----LGGDGF-MLQSFHQSKEYDKPIYGMN-   67 (264)
Q Consensus         7 ki~i~~~~~~~a~~~~~~l~~~-~~~------------~~~~~~Dlii~----iGGDGT-~L~a~~~~~~~~~PilGIn-   67 (264)
                      +|.++.++..-...+...|... |..            -..+.+|++|+    =|+||. +++.++.. ....|++-+. 
T Consensus         5 ~ILIVDDd~~~~~~l~~~L~~~g~~v~~a~~~~~a~~~l~~~~~dlii~D~~lp~~~G~el~~~l~~~-~~~~pii~~t~   83 (124)
T 1dc7_A            5 IVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALASKTPDVLLSDIRMPGMDGLALLKQIKQR-HPMLPVIIMTA   83 (124)
T ss_dssp             CCEEECSSSSHHHHHHHHHTTTTCCCEECCCTTHHHHHSSSCCCSCEEECSCSSHHHHCSTHHHHHHH-CTTSCCCCBCC
T ss_pred             EEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHH-CCCCEEEEEEC
T ss_conf             89999599999999999999889999998999999999983899999875889998459999999985-89991999989


Q ss_pred             ------------CCCCCCCCCCCCHHHHHHHHHHCCC
Q ss_conf             ------------3433201044587899986642012
Q gi|254780754|r   68 ------------CGSVGFLMNEYCIENLVERLSVAVE   92 (264)
Q Consensus        68 ------------~G~lGFL~~~~~~~~~~~~l~~~~~   92 (264)
                                  .|--+||.-++..+++...+.++..
T Consensus        84 ~~~~~~~~~a~~~G~~dyl~KP~~~~~L~~~i~~~l~  120 (124)
T 1dc7_A           84 HSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS  120 (124)
T ss_dssp             STTSTTTTSSCTTCCCCCBCSSCCHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
T ss_conf             8999999999986998078397999999999999999


No 147
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=34.40  E-value=21  Score=14.99  Aligned_cols=87  Identities=16%  Similarity=0.298  Sum_probs=47.5

Q ss_pred             CCE-EEEEEECCCHHHHHHHHHHHHHCCC-----C---------CHHHCCEEEEE-----CCCH-HHHHHHHHHHH-CCC
Q ss_conf             650-5999955998999999999987078-----8---------84557799998-----7954-89999999741-287
Q gi|254780754|r    4 NIQ-KIHFKASNAKKAQEAYDKFVKIYGN-----S---------TSEEADVIVVL-----GGDG-FMLQSFHQSKE-YDK   61 (264)
Q Consensus         4 ~~~-ki~i~~~~~~~a~~~~~~l~~~~~~-----~---------~~~~~Dlii~i-----GGDG-T~L~a~~~~~~-~~~   61 (264)
                      +|+ ||.++.++..-+..+...|.. .+-     .         ..+.+|++++=     |-|| .+++..|.... ..+
T Consensus         3 ~M~kkILvVdDd~~~~~~l~~~L~~-~g~~v~~a~~~~~al~~l~~~~pdliilD~~lp~~~~G~~l~~~ir~~~~~~~i   81 (127)
T 2gkg_A            3 HMSKKILIVESDTALSATLRSALEG-RGFTVDETTDGKGSVEQIRRDRPDLVVLAVDLSAGQNGYLICGKLKKDDDLKNV   81 (127)
T ss_dssp             ---CEEEEECSCHHHHHHHHHHHHH-HTCEEEEECCHHHHHHHHHHHCCSEEEEESBCGGGCBHHHHHHHHHHSTTTTTS
T ss_pred             CCCCCEEEEECCHHHHHHHHHHHHH-CCCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCCC
T ss_conf             5588599998999999999999998-799999989999999999847999999975777688899999999838888998


Q ss_pred             EEEEEC------------CCCCCCCCCCCCHHHHHHHHHHCC
Q ss_conf             299415------------343320104458789998664201
Q gi|254780754|r   62 PIYGMN------------CGSVGFLMNEYCIENLVERLSVAV   91 (264)
Q Consensus        62 PilGIn------------~G~lGFL~~~~~~~~~~~~l~~~~   91 (264)
                      ||+-+.            .|--+||+-+++.+++...+.+..
T Consensus        82 Pii~lt~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~L  123 (127)
T 2gkg_A           82 PIVIIGNPDGFAQHRKLKAHADEYVAKPVDADQLVERAGALI  123 (127)
T ss_dssp             CEEEEECGGGHHHHHHSTTCCSEEEESSCCHHHHHHHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH
T ss_conf             389996898599999998699899989899999999999987


No 148
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92, PSI-2; 2.10A {Neptuniibacter caesariensis}
Probab=34.36  E-value=21  Score=14.98  Aligned_cols=91  Identities=13%  Similarity=0.236  Sum_probs=52.0

Q ss_pred             CCCCCEE--EEEEECCCHHHHHHHHHHHHHCCC-----C---------CHHHCCEEEE----ECCCHH-HHHHHHHHHHC
Q ss_conf             9876505--999955998999999999987078-----8---------8455779999----879548-99999997412
Q gi|254780754|r    1 MDRNIQK--IHFKASNAKKAQEAYDKFVKIYGN-----S---------TSEEADVIVV----LGGDGF-MLQSFHQSKEY   59 (264)
Q Consensus         1 m~~~~~k--i~i~~~~~~~a~~~~~~l~~~~~~-----~---------~~~~~Dlii~----iGGDGT-~L~a~~~~~~~   59 (264)
                      |.++++.  +.++. +.+...+..+...+..+.     .         ....+|+|++    =+.||- +++.++.. ..
T Consensus         1 m~m~~~~~~ILiVD-Dd~~~~~~l~~~L~~~g~~v~~a~~~~~Al~~l~~~~~dliilD~~mp~~~G~~~l~~ir~~-~~   78 (154)
T 2rjn_A            1 MSLNYKNYTVMLVD-DEQPILNSLKRLIKRLGCNIITFTSPLDALEALKGTSVQLVISDMRMPEMGGEVFLEQVAKS-YP   78 (154)
T ss_dssp             ---CCSCCEEEEEC-SCHHHHHHHHHHHHTTTCEEEEESCHHHHHHHHTTSCCSEEEEESSCSSSCHHHHHHHHHHH-CT
T ss_pred             CCCCCCCCEEEEEE-CCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHHH-CC
T ss_conf             98999999899997-99999999999999879989998999999999862899889966888888818999999985-88


Q ss_pred             CCEEEEECC-------------CCC-CCCCCCCCHHHHHHHHHHCCCC
Q ss_conf             872994153-------------433-2010445878999866420124
Q gi|254780754|r   60 DKPIYGMNC-------------GSV-GFLMNEYCIENLVERLSVAVEC   93 (264)
Q Consensus        60 ~~PilGIn~-------------G~l-GFL~~~~~~~~~~~~l~~~~~~   93 (264)
                      ++|++=+-.             |-+ +||.-++..+.+...+.++...
T Consensus        79 ~~piI~lt~~~~~~~~~~ai~~Gavd~yL~KP~~~~~L~~~i~~al~~  126 (154)
T 2rjn_A           79 DIERVVISGYADAQATIDAVNRGKISRFLLKPWEDEDVFKVVEKGLQL  126 (154)
T ss_dssp             TSEEEEEECGGGHHHHHHHHHTTCCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHHHHHH
T ss_conf             997899986699999999997699987788979999999999999999


No 149
>3l3b_A ES1 family protein; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography, isoprenoid biosynthesis; 1.90A {Ehrlichia chaffeensis}
Probab=34.21  E-value=21  Score=14.97  Aligned_cols=39  Identities=23%  Similarity=0.234  Sum_probs=30.4

Q ss_pred             CCCCCHHHCCEEEEECC--------------------CHHHHHHHHHHHHCCCEEEEEC
Q ss_conf             07888455779999879--------------------5489999999741287299415
Q gi|254780754|r   29 YGNSTSEEADVIVVLGG--------------------DGFMLQSFHQSKEYDKPIYGMN   67 (264)
Q Consensus        29 ~~~~~~~~~Dlii~iGG--------------------DGT~L~a~~~~~~~~~PilGIn   67 (264)
                      +.+.+.++.|.+|.-||                    |-.+++.++.+...++|+-.|=
T Consensus       100 l~ev~~~dyDaliiPGG~g~a~nL~~~~~~~~~~~~~~~~v~~li~~f~~~~KpiaaIC  158 (242)
T 3l3b_A          100 IEQIRVEEFDMLVIPGGYGVAKNFSNLFDEDKENDYILPEFKNAVREFYNAKKPIGAVC  158 (242)
T ss_dssp             GGGCCGGGCSEEEECCCHHHHHHHBSTTSCC--CCCBCHHHHHHHHHHHHTTCCEEEET
T ss_pred             HHHCCCCCCCEEEECCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCEEEEC
T ss_conf             77889412898998897678877777665183141023899999999998799799987


No 150
>1su1_A Hypothetical protein YFCE; structural genomics, phosphoesterase, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.25A {Escherichia coli} SCOP: d.159.1.7
Probab=33.87  E-value=21  Score=14.93  Aligned_cols=39  Identities=18%  Similarity=0.395  Sum_probs=22.4

Q ss_pred             CCCEEEEEEECCCHHHHHHHHHHHHHCCCCCHHHCCEEEEECC
Q ss_conf             7650599995599899999999998707888455779999879
Q gi|254780754|r    3 RNIQKIHFKASNAKKAQEAYDKFVKIYGNSTSEEADVIVVLGG   45 (264)
Q Consensus         3 ~~~~ki~i~~~~~~~a~~~~~~l~~~~~~~~~~~~Dlii~iGG   45 (264)
                      ..||||+++++-.-... .++.+.+.+.   .+.+|.++..|-
T Consensus        23 ~~mMki~viSDiHgn~~-ale~vl~~~~---~~~~D~ii~lGD   61 (208)
T 1su1_A           23 NAMMKLMFASDIHGSLP-ATERVLELFA---QSGAQWLVILGD   61 (208)
T ss_dssp             --CCEEEEECCCTTBHH-HHHHHHHHHH---HHTCSEEEECSC
T ss_pred             CCCCEEEEEEECCCCHH-HHHHHHHHHH---HCCCCEEEECCC
T ss_conf             83318999931689989-9999999987---569988999166


No 151
>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin, teicoplanin, ORF1, natural products, antibiotic; HET: UDP; 1.15A {Amycolatopsis orientalis} PDB: 3h4i_A* 1pn3_A* 1pnv_A*
Probab=33.68  E-value=21  Score=14.92  Aligned_cols=35  Identities=14%  Similarity=0.020  Sum_probs=19.2

Q ss_pred             HHCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf             55779999879548999999974128729941534
Q gi|254780754|r   35 EEADVIVVLGGDGFMLQSFHQSKEYDKPIYGMNCG   69 (264)
Q Consensus        35 ~~~Dlii~iGGDGT~L~a~~~~~~~~~PilGIn~G   69 (264)
                      +.+|++|+-++.-.....+........|+......
T Consensus        91 ~~~D~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (404)
T 3h4t_A           91 EGCDAVVTTGLLPAAVAVRSMAEKLGIPYRYTVLS  125 (404)
T ss_dssp             TTCSEEEEEECHHHHHHHHHHHHHHTCCEEEEESS
T ss_pred             CCCCEEEECCCCHHHHHHHHHHHHCCCCCEECCCC
T ss_conf             79899999997178899999998618872002457


No 152
>3khd_A Pyruvate kinase; malaria, structural genomics, structural genomics consortium, SGC; 2.70A {Plasmodium falciparum 3D7}
Probab=33.20  E-value=22  Score=14.87  Aligned_cols=36  Identities=17%  Similarity=0.113  Sum_probs=27.5

Q ss_pred             EEEECCEEEEECCCCHHHHHHHCCCEEEEECCCEEEEECC
Q ss_conf             1210350798226650446752298177408860586303
Q gi|254780754|r  148 PELVCDGLVVSTPIGSTAYNFSALGPILPLESRHLLLTPV  187 (264)
Q Consensus       148 ~~~~~DGvivSTptGSTAY~lSaGGpIv~p~~~~~~itpI  187 (264)
                      ....++.+++-|-+|+||..+|.-    .|..+.+.+||=
T Consensus       415 ~~l~akaIVv~T~SG~TAr~vSr~----RP~~PIiavT~~  450 (520)
T 3khd_A          415 ESIQASLIIALTETGYTARLIAKY----KPSCTILALSAS  450 (520)
T ss_dssp             HHTTCSEEEEECSSSHHHHHHHHT----CCSSEEEEEESC
T ss_pred             HHCCCCEEEEECCCCHHHHHHHHH----CCCCCEEEECCC
T ss_conf             746999999988985899999954----979998998698


No 153
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=32.58  E-value=22  Score=14.80  Aligned_cols=88  Identities=14%  Similarity=0.168  Sum_probs=51.7

Q ss_pred             EEEEEEECCCHHHHHHHHHHHHHCCC-------C----------------CHHHCCEEEEE----CCCHH-HHHHHHHHH
Q ss_conf             05999955998999999999987078-------8----------------84557799998----79548-999999974
Q gi|254780754|r    6 QKIHFKASNAKKAQEAYDKFVKIYGN-------S----------------TSEEADVIVVL----GGDGF-MLQSFHQSK   57 (264)
Q Consensus         6 ~ki~i~~~~~~~a~~~~~~l~~~~~~-------~----------------~~~~~Dlii~i----GGDGT-~L~a~~~~~   57 (264)
                      ++|.+ ..+++...++.+...+..+.       .                ....+|+|+.=    |.||. +++..|...
T Consensus         9 ~~ILi-VdD~~~~~~~l~~~L~~~g~~~~v~~~~~g~eAl~~l~~~~~~~~~~~pdlillD~~mP~~~G~el~~~ir~~~   87 (149)
T 1i3c_A            9 KVILL-VEDSKADSRLVQEVLKTSTIDHELIILRDGLAAMAFLQQQGEYENSPRPNLILLDLNLPKKDGREVLAEIKQNP   87 (149)
T ss_dssp             EEEEE-ECCCHHHHHHHHHHHHSCCSCEEEEEECSHHHHHHHHTTCGGGTTCCCCSEEEECSCCSSSCHHHHHHHHHHCT
T ss_pred             CEEEE-EECCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHCCHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHCC
T ss_conf             98999-97999999999999997699847999899999999998500221268988899848999986499999998580


Q ss_pred             H-CCCEEEEECC-------------CCCCCCCCCCCHHHHHHHHHHCCCCC
Q ss_conf             1-2872994153-------------43320104458789998664201243
Q gi|254780754|r   58 E-YDKPIYGMNC-------------GSVGFLMNEYCIENLVERLSVAVECT   94 (264)
Q Consensus        58 ~-~~~PilGIn~-------------G~lGFL~~~~~~~~~~~~l~~~~~~~   94 (264)
                      . ..+||+=+..             |--+||.-++..+++.+.+..+...+
T Consensus        88 ~~~~iPvI~lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~i~~~~  138 (149)
T 1i3c_A           88 DLKRIPVVVLTTSHNEDDVIASYELHVNCYLTKSRNLKDLFKMVQGIESFW  138 (149)
T ss_dssp             TTTTSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHH
T ss_conf             447998899956899999999998799899979899999999999999988


No 154
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=32.40  E-value=23  Score=14.78  Aligned_cols=85  Identities=12%  Similarity=0.207  Sum_probs=47.8

Q ss_pred             EEEEEEECCCHHHHHHHHHHHHHCCCC------CH---------HHCCEEEEE----CCCHH-HHHHHHHHH-HCCCEEE
Q ss_conf             059999559989999999999870788------84---------557799998----79548-999999974-1287299
Q gi|254780754|r    6 QKIHFKASNAKKAQEAYDKFVKIYGNS------TS---------EEADVIVVL----GGDGF-MLQSFHQSK-EYDKPIY   64 (264)
Q Consensus         6 ~ki~i~~~~~~~a~~~~~~l~~~~~~~------~~---------~~~Dlii~i----GGDGT-~L~a~~~~~-~~~~Pil   64 (264)
                      .|+-++ ++++..........+.++..      +.         +.+|++++=    |.||. +++..|.-. ...+|++
T Consensus         7 lrILiV-DD~~~~~~~l~~~L~~~g~~~v~~a~~~~~al~~~~~~~~dlii~D~~mP~~dG~~l~~~ir~~~~~~~~pii   85 (129)
T 1p6q_A            7 IKVLIV-DDQVTSRLLLGDALQQLGFKQITAAGDGEQGMKIMAQNPHHLVISDFNMPKMDGLGLLQAVRANPATKKAAFI   85 (129)
T ss_dssp             CCEEEE-CSSHHHHHHHHHHHHTTTCSCEECCSSHHHHHHHHHTSCCSEEEECSSSCSSCHHHHHHHHTTCTTSTTCEEE
T ss_pred             CEEEEE-ECCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCEEE
T ss_conf             889999-5989999999999998799299998999999999971899899984588999879999999838566898299


Q ss_pred             EECC-------------CCCCCCCCCCCHHHHHHHHHHCC
Q ss_conf             4153-------------43320104458789998664201
Q gi|254780754|r   65 GMNC-------------GSVGFLMNEYCIENLVERLSVAV   91 (264)
Q Consensus        65 GIn~-------------G~lGFL~~~~~~~~~~~~l~~~~   91 (264)
                      -+..             |--+||.-+++.+++.+.+.++.
T Consensus        86 ~ls~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~i~~vl  125 (129)
T 1p6q_A           86 ILTAQGDRALVQKAAALGANNVLAKPFTIEKMKAAIEAVF  125 (129)
T ss_dssp             ECCSCCCHHHHHHHHHHTCSCEECCCSSHHHHHHHHHHHH
T ss_pred             EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH
T ss_conf             9980499999999998799889989899999999999999


No 155
>1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; HET: NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A*
Probab=32.35  E-value=23  Score=14.78  Aligned_cols=40  Identities=8%  Similarity=-0.102  Sum_probs=33.4

Q ss_pred             HHHCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCC
Q ss_conf             4557799998795489999999741287299415343320104
Q gi|254780754|r   34 SEEADVIVVLGGDGFMLQSFHQSKEYDKPIYGMNCGSVGFLMN   76 (264)
Q Consensus        34 ~~~~Dlii~iGGDGT~L~a~~~~~~~~~PilGIn~G~lGFL~~   76 (264)
                      ..++|++|-..+--+....+..+...++|++-   ++.|++.+
T Consensus        58 ~~~~DvVve~~~~~~~~~~~~~al~~g~~vv~---~s~g~~~~   97 (253)
T 1j5p_A           58 PSDVSTVVECASPEAVKEYSLQILKNPVNYII---ISTSAFAD   97 (253)
T ss_dssp             CTTCCEEEECSCHHHHHHHHHHHTTSSSEEEE---CCGGGGGS
T ss_pred             CCCCCEEEECCCCHHHHHHHHHHHHCCCCEEE---ECCCCCCC
T ss_conf             57998999858807999999999973997999---83642457


No 156
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=31.23  E-value=24  Score=14.66  Aligned_cols=90  Identities=16%  Similarity=0.317  Sum_probs=50.8

Q ss_pred             CCCCCE--EEEEEECCCHHHHHHHHHHHHH-CCC---CC---------HHHCCEEEE----ECCCHH-HHHHHHHHHHCC
Q ss_conf             987650--5999955998999999999987-078---88---------455779999----879548-999999974128
Q gi|254780754|r    1 MDRNIQ--KIHFKASNAKKAQEAYDKFVKI-YGN---ST---------SEEADVIVV----LGGDGF-MLQSFHQSKEYD   60 (264)
Q Consensus         1 m~~~~~--ki~i~~~~~~~a~~~~~~l~~~-~~~---~~---------~~~~Dlii~----iGGDGT-~L~a~~~~~~~~   60 (264)
                      |+--|+  ||.++.++..-+..+...|... |..   .+         .+.+|+++.    -++||. ++...+. ....
T Consensus         1 m~~g~~~pkILiVeDd~~~~~~l~~~L~~~g~~V~~a~~~~ea~~~~~~~~~dlvilD~~lp~~~g~~~~~~~r~-~~~~   79 (233)
T 1ys7_A            1 MDTGVTSPRVLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSATENRPDAIVLDINMPVLDGVSVVTALRA-MDND   79 (233)
T ss_dssp             ------CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEESSCSSSCHHHHHHHHHH-TTCC
T ss_pred             CCCCCCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEECCC-CCCC
T ss_conf             998999987999979999999999999978999999899999999997479978975223875568622310123-5777


Q ss_pred             CEEEEEC-------------CCCCCCCCCCCCHHHHHHHHHHCC
Q ss_conf             7299415-------------343320104458789998664201
Q gi|254780754|r   61 KPIYGMN-------------CGSVGFLMNEYCIENLVERLSVAV   91 (264)
Q Consensus        61 ~PilGIn-------------~G~lGFL~~~~~~~~~~~~l~~~~   91 (264)
                      +|++-+.             .|--+|++-+++.+++...+....
T Consensus        80 ~~iiilt~~~~~~~~v~al~~GAddyl~KP~~~~eL~a~i~~~~  123 (233)
T 1ys7_A           80 VPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALL  123 (233)
T ss_dssp             CCEEEEECCCTTTCCCTTTTTTCSEEEESSCCHHHHHHHHHHHH
T ss_pred             CCEECCCCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH
T ss_conf             62331456688999999997799299978998799999999999


No 157
>3o1n_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, lyase; 1.03A {Salmonella enterica subsp} PDB: 3lb0_A* 3l2i_A* 3nnt_A* 3m7w_A* 1gqn_A 1l9w_A* 1qfe_A*
Probab=30.15  E-value=23  Score=14.74  Aligned_cols=10  Identities=10%  Similarity=-0.134  Sum_probs=3.8

Q ss_pred             CCEEEEECCC
Q ss_conf             3507982266
Q gi|254780754|r  152 CDGLVVSTPI  161 (264)
Q Consensus       152 ~DGvivSTpt  161 (264)
                      +|-+=+++..
T Consensus       190 aDivKiA~~~  199 (276)
T 3o1n_A          190 ADIPKIAVMP  199 (276)
T ss_dssp             CSEEEEEECC
T ss_pred             CCEEEEEEEC
T ss_conf             9989999806


No 158
>2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene, phosphoprotein, GMP synthetase, guanine monophosphate synthetase, chromosomal rearrangement; HET: XMP; 2.5A {Homo sapiens}
Probab=30.05  E-value=25  Score=14.54  Aligned_cols=66  Identities=12%  Similarity=0.211  Sum_probs=44.7

Q ss_pred             CEEEEEEECCCHHHHHHHHHHHHHC--CC-----CCH-----HHCCEEEEECCCHHHHHH-----HHHHHHCCCEEEEEC
Q ss_conf             5059999559989999999999870--78-----884-----557799998795489999-----999741287299415
Q gi|254780754|r    5 IQKIHFKASNAKKAQEAYDKFVKIY--GN-----STS-----EEADVIVVLGGDGFMLQS-----FHQSKEYDKPIYGMN   67 (264)
Q Consensus         5 ~~ki~i~~~~~~~a~~~~~~l~~~~--~~-----~~~-----~~~Dlii~iGGDGT~L~a-----~~~~~~~~~PilGIn   67 (264)
                      -.||.++.-..+-++-+++.+.+.-  .+     ...     .+++-||-=||=++....     .....+.++|||||=
T Consensus        29 ~~kIlIlDFGsQYtqLIaRRiRElgVyseI~p~~~~~e~i~~~~p~GIILSGGP~SV~~~~ap~~~~~if~l~iPILGIC  108 (697)
T 2vxo_A           29 EGAVVILDAGAQYGKVIDRRVRELFVQSEIFPLETPAFAIKEQGFRAIIISGGPNSVYAEDAPWFDPAIFTIGKPVLGIC  108 (697)
T ss_dssp             CCCEEEEEEC--CHHHHHHHHHHTTCCEEEEETTCCHHHHHHHTCSEEEEEECC-------CCCCCGGGTTSSCCEEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHCCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCEEEEC
T ss_conf             89899998895499999999985197289977999999996169999998899986779999988999982899989987


Q ss_pred             CCC
Q ss_conf             343
Q gi|254780754|r   68 CGS   70 (264)
Q Consensus        68 ~G~   70 (264)
                      .|+
T Consensus       109 yG~  111 (697)
T 2vxo_A          109 YGM  111 (697)
T ss_dssp             HHH
T ss_pred             HHH
T ss_conf             999


No 159
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix-turn-helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1
Probab=29.80  E-value=25  Score=14.51  Aligned_cols=84  Identities=17%  Similarity=0.330  Sum_probs=49.8

Q ss_pred             EEEEEEECCCHHHHHHHHHHHHH-CC---CCC---------HHHCCEEEE----ECCCHH-HHHHHHHHHHCCCEEEEEC
Q ss_conf             05999955998999999999987-07---888---------455779999----879548-9999999741287299415
Q gi|254780754|r    6 QKIHFKASNAKKAQEAYDKFVKI-YG---NST---------SEEADVIVV----LGGDGF-MLQSFHQSKEYDKPIYGMN   67 (264)
Q Consensus         6 ~ki~i~~~~~~~a~~~~~~l~~~-~~---~~~---------~~~~Dlii~----iGGDGT-~L~a~~~~~~~~~PilGIn   67 (264)
                      +||.++.++..-+..+...|... |.   ..+         ...+|++|+    -++||. +++..+. .....||+-+.
T Consensus         3 ~rILiVeDd~~~~~~l~~~L~~~g~~V~~a~~~~ea~~~~~~~~~dliilD~~lp~~~g~~~~~~ir~-~~~~~pii~ls   81 (225)
T 1kgs_A            3 VRVLVVEDERDLADLITEALKKEMFTVDVCYDGEEGMYMALNEPFDVVILDIMLPVHDGWEILKSMRE-SGVNTPVLMLT   81 (225)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHH-TTCCCCEEEEE
T ss_pred             CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHC-CCCCCCEEECC
T ss_conf             61999929999999999999987999999899999999997289989999467765431010122111-34567532023


Q ss_pred             C-------------CCCCCCCCCCCHHHHHHHHHHC
Q ss_conf             3-------------4332010445878999866420
Q gi|254780754|r   68 C-------------GSVGFLMNEYCIENLVERLSVA   90 (264)
Q Consensus        68 ~-------------G~lGFL~~~~~~~~~~~~l~~~   90 (264)
                      .             |--.|+.-++.++++...+...
T Consensus        82 ~~~~~~~~~~~l~~Gaddyl~KP~~~~eL~a~i~~~  117 (225)
T 1kgs_A           82 ALSDVEYRVKGLNMGADDYLPKPFDLRELIARVRAL  117 (225)
T ss_dssp             SSCHHHHHHHTCCCCCSEEEESSCCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHCCCCEECCCCCCHHHHHHHHHHH
T ss_conf             344167899999779985245899999999999999


No 160
>1weh_A Conserved hypothetical protein TT1887; rossman fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus HB8} SCOP: c.129.1.1
Probab=29.53  E-value=25  Score=14.48  Aligned_cols=61  Identities=10%  Similarity=0.059  Sum_probs=35.1

Q ss_pred             CEEEEEEECCC----HHHHHHHHHHHHHCCCCCHHHCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf             50599995599----899999999998707888455779999879548999999974128729941534
Q gi|254780754|r    5 IQKIHFKASNA----KKAQEAYDKFVKIYGNSTSEEADVIVVLGGDGFMLQSFHQSKEYDKPIYGMNCG   69 (264)
Q Consensus         5 ~~ki~i~~~~~----~~a~~~~~~l~~~~~~~~~~~~Dlii~iGGDGT~L~a~~~~~~~~~PilGIn~G   69 (264)
                      |+++.++.+..    +...+..+++-+.+.+...    -++.=||.|.|=.+++-+...+-.++||...
T Consensus         1 mk~V~Vfgss~~~~~~~~~~~a~~lG~~La~~g~----~lv~GGg~G~M~a~a~ga~~~gg~viGi~~~   65 (171)
T 1weh_A            1 MRLLAVFVSSRLSPEDPLYARWVRYGEVLAEEGF----GLACGGYQGGMEALARGVKAKGGLVVGVTAP   65 (171)
T ss_dssp             CEEEEEECCSSCCTTSHHHHHHHHHHHHHHHTTE----EEEECCSSTHHHHHHHHHHHTTCCEEECCCG
T ss_pred             CCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCC----EEEECCCHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf             9889999217899898899999999999998899----8998995457799998898658853132112


No 161
>3bbn_B Ribosomal protein S2; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=28.90  E-value=26  Score=14.41  Aligned_cols=30  Identities=7%  Similarity=0.208  Sum_probs=16.2

Q ss_pred             HCCEEEEECCCHHHHHHHHHHHHCCCEEEEE
Q ss_conf             5779999879548999999974128729941
Q gi|254780754|r   36 EADVIVVLGGDGFMLQSFHQSKEYDKPIYGM   66 (264)
Q Consensus        36 ~~Dlii~iGGDGT~L~a~~~~~~~~~PilGI   66 (264)
                      .||++|++.-+.--. |++.+...++|++||
T Consensus       157 ~Pd~viv~d~~~~~~-ai~Ea~~l~IPvI~i  186 (231)
T 3bbn_B          157 LPDIVIIVDQQEEYT-ALRECITLGIPTICL  186 (231)
T ss_dssp             CCSEEEESCTTTTHH-HHHHHHTTTCCEEEC
T ss_pred             CCCEEEECCCCCCHH-HHHHHHHCCCCEEEE
T ss_conf             997798528632279-999999739987887


No 162
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixation regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=28.83  E-value=26  Score=14.41  Aligned_cols=86  Identities=15%  Similarity=0.185  Sum_probs=51.9

Q ss_pred             EEEEEEECCCHHHHHHHHHHHHHCCC-----C---------CHHHCCEEEE----ECCCH-HHHHHHHHHHHCCCEEEEE
Q ss_conf             05999955998999999999987078-----8---------8455779999----87954-8999999974128729941
Q gi|254780754|r    6 QKIHFKASNAKKAQEAYDKFVKIYGN-----S---------TSEEADVIVV----LGGDG-FMLQSFHQSKEYDKPIYGM   66 (264)
Q Consensus         6 ~ki~i~~~~~~~a~~~~~~l~~~~~~-----~---------~~~~~Dlii~----iGGDG-T~L~a~~~~~~~~~PilGI   66 (264)
                      .|+.++.++..-...+...|.+ .+.     .         ....+|++++    =|+|| .+++.++.. ..++|++-+
T Consensus         4 ~~ILiVDDd~~~r~~l~~~L~~-~g~~v~~a~~~~~al~~~~~~~~dlvi~D~~mP~~~G~~ll~~ir~~-~~~~pvI~l   81 (126)
T 1dbw_A            4 YTVHIVDDEEPVRKSLAFMLTM-NGFAVKMHQSAEAFLAFAPDVRNGVLVTDLRMPDMSGVELLRNLGDL-KINIPSIVI   81 (126)
T ss_dssp             CEEEEEESSHHHHHHHHHHHHH-TTCEEEEESCHHHHHHHGGGCCSEEEEEECCSTTSCHHHHHHHHHHT-TCCCCEEEE
T ss_pred             CEEEEEECCHHHHHHHHHHHHH-CCCEEEEECCHHHHHHHHHHCCCCEEECCCCCCCCCCHHHHHHHHHH-CCCCEEEEE
T ss_conf             9899996999999999999998-79999998999999999763799879710368888829999999961-999839999


Q ss_pred             CC-------------CCCCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf             53-------------4332010445878999866420124
Q gi|254780754|r   67 NC-------------GSVGFLMNEYCIENLVERLSVAVEC   93 (264)
Q Consensus        67 n~-------------G~lGFL~~~~~~~~~~~~l~~~~~~   93 (264)
                      ..             |--+||.-++..+.+...+.++..+
T Consensus        82 T~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~a~~~  121 (126)
T 1dbw_A           82 TGHGDVPMAVEAMKAGAVDFIEKPFEDTVIIEAIERASEH  121 (126)
T ss_dssp             ECTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHTT
T ss_pred             ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHH
T ss_conf             6889999999999879988998969999999999999999


No 163
>2kdd_A Borealin; protein dimer, cell cycle, cell division, centromere, chromosomal protein, cytoplasm, mitosis, nucleus, phosphoprotein, polymorphism; NMR {Homo sapiens}
Probab=28.72  E-value=14  Score=16.11  Aligned_cols=24  Identities=33%  Similarity=0.421  Sum_probs=15.3

Q ss_pred             HHHHHHCCCEEEEECCCEEEEECC
Q ss_conf             446752298177408860586303
Q gi|254780754|r  164 TAYNFSALGPILPLESRHLLLTPV  187 (264)
Q Consensus       164 TAY~lSaGGpIv~p~~~~~~itpI  187 (264)
                      --|++|+.|+.+.-.-+.++-+|+
T Consensus         6 rVYt~S~NGSPLA~~~ei~itVPv   29 (76)
T 2kdd_A            6 RIYNISGNGSPLADSKEIFLTVPV   29 (76)
T ss_dssp             --------------CCSCEECCCS
T ss_pred             CEEEEECCCCCCCCCCEEEEEEEC
T ss_conf             458872168747887617999752


No 164
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 1cye_A 2che_A 2chf_A 2pl9_A* 2pmc_A ...
Probab=28.42  E-value=26  Score=14.36  Aligned_cols=88  Identities=15%  Similarity=0.320  Sum_probs=49.9

Q ss_pred             CCCCEEEEEEECCCHHHHHHHHHHHHHCCCCC---------------HHHCCEEEEE----CCCHH-HHHHHHHHH-HCC
Q ss_conf             87650599995599899999999998707888---------------4557799998----79548-999999974-128
Q gi|254780754|r    2 DRNIQKIHFKASNAKKAQEAYDKFVKIYGNST---------------SEEADVIVVL----GGDGF-MLQSFHQSK-EYD   60 (264)
Q Consensus         2 ~~~~~ki~i~~~~~~~a~~~~~~l~~~~~~~~---------------~~~~Dlii~i----GGDGT-~L~a~~~~~-~~~   60 (264)
                      +|+| |+-+ .++++...+....+.+.++-..               .+.+|++++=    |.||. +++..|... ...
T Consensus         2 dk~l-rILi-VDD~~~~r~~l~~~L~~~g~~~v~~a~~g~~a~~~~~~~~~dliilD~~mP~~dG~el~~~ir~~~~~~~   79 (128)
T 1jbe_A            2 DKEL-KFLV-VDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDGLELLKTIRAXXAMSA   79 (128)
T ss_dssp             CTTC-CEEE-ECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHTTCCCCEEEEESCCSSSCHHHHHHHHHC--CCTT
T ss_pred             CCCC-EEEE-EECCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCC
T ss_conf             9999-9999-9698999999999999879968999899999999976289999999699999998999999997567799


Q ss_pred             CEEEEECC-------------CCCCCCCCCCCHHHHHHHHHHCC
Q ss_conf             72994153-------------43320104458789998664201
Q gi|254780754|r   61 KPIYGMNC-------------GSVGFLMNEYCIENLVERLSVAV   91 (264)
Q Consensus        61 ~PilGIn~-------------G~lGFL~~~~~~~~~~~~l~~~~   91 (264)
                      +||+-+..             |--+||+-++..+++.+.+.++.
T Consensus        80 ~piI~lt~~~~~~~~~~a~~~G~~~~l~KP~~~~~L~~~l~~~l  123 (128)
T 1jbe_A           80 LPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIF  123 (128)
T ss_dssp             CCEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH
T ss_conf             93899989899999999998799899989899999999999999


No 165
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=28.27  E-value=26  Score=14.34  Aligned_cols=85  Identities=14%  Similarity=0.323  Sum_probs=49.7

Q ss_pred             EEEEEECCCHHHHHHHHHHHHHCCC-----C---------CHHHCCEEEE---ECCCHH-HHHHHHHHHHCCCEEEEECC
Q ss_conf             5999955998999999999987078-----8---------8455779999---879548-99999997412872994153
Q gi|254780754|r    7 KIHFKASNAKKAQEAYDKFVKIYGN-----S---------TSEEADVIVV---LGGDGF-MLQSFHQSKEYDKPIYGMNC   68 (264)
Q Consensus         7 ki~i~~~~~~~a~~~~~~l~~~~~~-----~---------~~~~~Dlii~---iGGDGT-~L~a~~~~~~~~~PilGIn~   68 (264)
                      +|. +.++.+......+.+.+..+-     .         ..+.+|+|++   -|.||. +++..+. ...++||+-+..
T Consensus         6 ~IL-iVDD~~~~~~~l~~~L~~~G~~v~~a~~g~eal~~l~~~~~dlvllD~mp~~dGl~l~~~ir~-~~~~~piI~lT~   83 (142)
T 2qxy_A            6 TVM-VVDESRITFLAVKNALEKDGFNVIWAKNEQEAFTFLRREKIDLVFVDVFEGEESLNLIRRIRE-EFPDTKVAVLSA   83 (142)
T ss_dssp             EEE-EECSCHHHHHHHHHHHGGGTCEEEEESSHHHHHHHHTTSCCSEEEEECTTTHHHHHHHHHHHH-HCTTCEEEEEES
T ss_pred             EEE-EEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHH-HCCCCCEEEEEC
T ss_conf             699-998989999999999998799999989999999999857999998547863128999999998-689997899973


Q ss_pred             -------------CCCCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf             -------------4332010445878999866420124
Q gi|254780754|r   69 -------------GSVGFLMNEYCIENLVERLSVAVEC   93 (264)
Q Consensus        69 -------------G~lGFL~~~~~~~~~~~~l~~~~~~   93 (264)
                                   |--+||.-++..+.+...+.+....
T Consensus        84 ~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~l~~  121 (142)
T 2qxy_A           84 YVDKDLIINSVKAGAVDYILKPFRLDYLLERVKKIISS  121 (142)
T ss_dssp             CCCHHHHHHHHHHTCSCEEESSCCHHHHHHHHHHHHHC
T ss_pred             CCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
T ss_conf             58889999999768978997989999999999999856


No 166
>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway; 2.10A {Thermus thermophilus HB8} PDB: 2ywc_A*
Probab=27.69  E-value=12  Score=16.60  Aligned_cols=63  Identities=8%  Similarity=0.173  Sum_probs=40.4

Q ss_pred             EEEEECCCHHHHHHHHHHHHH--CCC-----CCH-----HHCCEEEEECCCHHHH-----HHHHHHHHCCCEEEEECCCC
Q ss_conf             999955998999999999987--078-----884-----5577999987954899-----99999741287299415343
Q gi|254780754|r    8 IHFKASNAKKAQEAYDKFVKI--YGN-----STS-----EEADVIVVLGGDGFML-----QSFHQSKEYDKPIYGMNCGS   70 (264)
Q Consensus         8 i~i~~~~~~~a~~~~~~l~~~--~~~-----~~~-----~~~Dlii~iGGDGT~L-----~a~~~~~~~~~PilGIn~G~   70 (264)
                      |.++....+-++.+++.+.+.  |.+     ...     .++|-||.=||-|+..     .......+.++|+|||=.|+
T Consensus         2 IlIlDfGsQytqlIaRriRElgvyseI~P~~~~~eei~~~~p~GIILSGGP~SV~d~~~~~~~~~i~~~~IPILGICyG~   81 (503)
T 2ywb_A            2 VLVLDFGSQYTRLIARRLRELRAFSLILPGDAPLEEVLKHRPQALILSGGPRSVFDPDAPRPDPRLFSSGLPLLGICYGM   81 (503)
T ss_dssp             EEEEESSCTTHHHHHHHHHTTTCCEEEEETTCCHHHHHTTCCSEEEECCCSSCSSCTTCCCCCGGGGCSSCCEEEETHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHCCCCCEEEECHHH
T ss_conf             89998897299999999998698399986989999997169899998999987345898503199883999699981899


No 167
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=27.69  E-value=27  Score=14.28  Aligned_cols=86  Identities=10%  Similarity=0.277  Sum_probs=45.7

Q ss_pred             EEEEEEECCCHHHHHHHHHHHHHCCCC--------------CHHHCCEEEEE----CCCHH-HHHHHHHHH-HCCCEEEE
Q ss_conf             059999559989999999999870788--------------84557799998----79548-999999974-12872994
Q gi|254780754|r    6 QKIHFKASNAKKAQEAYDKFVKIYGNS--------------TSEEADVIVVL----GGDGF-MLQSFHQSK-EYDKPIYG   65 (264)
Q Consensus         6 ~ki~i~~~~~~~a~~~~~~l~~~~~~~--------------~~~~~Dlii~i----GGDGT-~L~a~~~~~-~~~~PilG   65 (264)
                      ||+-++ .+++...+......+..+-.              ....+|+|+.=    +.||. +++..|.-. ..++||+-
T Consensus         2 kriLiV-dD~~~~~~~l~~~L~~~g~~v~~a~~g~~al~~~~~~~pdlillD~~mp~~~G~el~~~ir~~~~~~~iPii~   80 (124)
T 1mb3_A            2 KKVLIV-EDNELNMKLFHDLLEAQGYETLQTREGLSALSIARENKPDLILMDIQLPEISGLEVTKWLKEDDDLAHIPVVA   80 (124)
T ss_dssp             CEEEEE-CSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHHCCSEEEEESBCSSSBHHHHHHHHHHSTTTTTSCEEE
T ss_pred             CEEEEE-ECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCCCCEEE
T ss_conf             759999-5899999999999998799999989999999999837999999789999984799999998288779996899


Q ss_pred             ECC-------------CCCCCCCCCCCHHHHHHHHHHCCC
Q ss_conf             153-------------433201044587899986642012
Q gi|254780754|r   66 MNC-------------GSVGFLMNEYCIENLVERLSVAVE   92 (264)
Q Consensus        66 In~-------------G~lGFL~~~~~~~~~~~~l~~~~~   92 (264)
                      +..             |--+||+-+++.+++...+.+...
T Consensus        81 ls~~~~~~~~~~~~~~G~~~yl~KP~~~~~L~~~l~~~l~  120 (124)
T 1mb3_A           81 VTAFAMKGDEERIREGGCEAYISKPISVVHFLETIKRLLE  120 (124)
T ss_dssp             EC------CHHHHHHHTCSEEECSSCCHHHHHHHHHHHHS
T ss_pred             EECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
T ss_conf             9898998999999977998999898999999999999983


No 168
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=27.53  E-value=27  Score=14.26  Aligned_cols=91  Identities=18%  Similarity=0.253  Sum_probs=49.0

Q ss_pred             CCCCCEEEEEEECCCHHHHHHHHHHHHH-CCC---CC---------HHHCCEEEEE----CCCHHHHHHHHHHHHCCCEE
Q ss_conf             9876505999955998999999999987-078---88---------4557799998----79548999999974128729
Q gi|254780754|r    1 MDRNIQKIHFKASNAKKAQEAYDKFVKI-YGN---ST---------SEEADVIVVL----GGDGFMLQSFHQSKEYDKPI   63 (264)
Q Consensus         1 m~~~~~ki~i~~~~~~~a~~~~~~l~~~-~~~---~~---------~~~~Dlii~i----GGDGT~L~a~~~~~~~~~Pi   63 (264)
                      |+.-.+||.++.++..-+..+.+.|... |..   ..         ...+|++|.=    |+||.-+-.... .....|+
T Consensus         1 m~~Mk~kILiVeDd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~~~~DliilD~~lp~~~g~~~~~~~r-~~~~~~i   79 (238)
T 2gwr_A            1 MDTMRQRILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVRELRPDLVLLDLMLPGMNGIDVCRVLR-ADSGVPI   79 (238)
T ss_dssp             -CCCCCEEEEECSCHHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHCCSEEEEESSCSSSCHHHHHHHHH-TTCCCCE
T ss_pred             CCCCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEECCC-CCCCCCC
T ss_conf             976687499993999999999999997799999989999999999837999999916776668871231122-3566531


Q ss_pred             EEEC-------------CCCCCCCCCCCCHHHHHHHHHHCCC
Q ss_conf             9415-------------3433201044587899986642012
Q gi|254780754|r   64 YGMN-------------CGSVGFLMNEYCIENLVERLSVAVE   92 (264)
Q Consensus        64 lGIn-------------~G~lGFL~~~~~~~~~~~~l~~~~~   92 (264)
                      +=+.             .|--.|++-+++++++...+.....
T Consensus        80 Iilt~~~~~~~~~~al~~Gaddyl~KP~~~~eL~ari~a~lr  121 (238)
T 2gwr_A           80 VMLTAKTDTVDVVLGLESGADDYIMKPFKPKELVARVRARLR  121 (238)
T ss_dssp             EEEEETTCCSCHHHHHHTTCCEEEEESCCHHHHHHHHHHHCC
T ss_pred             CCCCCCCCHHHHHHHHHCCCCEECCCCCCHHHHHHHHHHHHC
T ss_conf             101258999999999977998802189999999999999963


No 169
>3er6_A Putative transcriptional regulator protein; structural genomics, unknown function, DNA-binding, transcription regulation, PSI-2; 1.90A {Vibrio parahaemolyticus}
Probab=26.75  E-value=28  Score=14.17  Aligned_cols=36  Identities=6%  Similarity=0.135  Sum_probs=26.2

Q ss_pred             HHCCEEEEECCCH----------HHHHHHHHHHHCCCEEEEECCCC
Q ss_conf             5577999987954----------89999999741287299415343
Q gi|254780754|r   35 EEADVIVVLGGDG----------FMLQSFHQSKEYDKPIYGMNCGS   70 (264)
Q Consensus        35 ~~~Dlii~iGGDG----------T~L~a~~~~~~~~~PilGIn~G~   70 (264)
                      +..|++++-||-|          .++..++.......+|.+|-+|.
T Consensus        73 ~~~Dilivpg~~~~~~~~~~~~~~l~~~L~~~~~~g~~i~aic~Ga  118 (209)
T 3er6_A           73 DFTNILIIGSIGDPLESLDKIDPALFDWIRELHLKGSKIVAIDTGI  118 (209)
T ss_dssp             SCCSEEEECCCSCHHHHGGGSCHHHHHHHHHHHHTTCEEEEETTHH
T ss_pred             CCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEECHHH
T ss_conf             7103776424677641223489999999999987498898413789


No 170
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=26.28  E-value=29  Score=14.12  Aligned_cols=85  Identities=16%  Similarity=0.310  Sum_probs=53.8

Q ss_pred             EEEEEECCCHHHHHHHHHHHHHCCC--------------CCHHHCCEEEE----ECCCH-HHHHHHHHHHHCCCEEEEEC
Q ss_conf             5999955998999999999987078--------------88455779999----87954-89999999741287299415
Q gi|254780754|r    7 KIHFKASNAKKAQEAYDKFVKIYGN--------------STSEEADVIVV----LGGDG-FMLQSFHQSKEYDKPIYGMN   67 (264)
Q Consensus         7 ki~i~~~~~~~a~~~~~~l~~~~~~--------------~~~~~~Dlii~----iGGDG-T~L~a~~~~~~~~~PilGIn   67 (264)
                      +|.++. +.+........+.+..+-              -....+|+|++    =|.|| .+++.++.. ..++||+=+.
T Consensus         5 ~ILiVD-Dd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~dliilD~~mP~~dGle~~~~ir~~-~~~~pvI~lT   82 (155)
T 1qkk_A            5 SVFLID-DDRDLRKAMQQTLELAGFTVSSFASATEALAGLSADFAGIVISDIRMPGMDGLALFRKILAL-DPDLPMILVT   82 (155)
T ss_dssp             EEEEEC-SCHHHHHHHHHHHHHTTCEEEEESCHHHHHHTCCTTCCSEEEEESCCSSSCHHHHHHHHHHH-CTTSCEEEEE
T ss_pred             EEEEEE-CCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEECCCCCCCCCHHHHHHHHHHH-CCCCCEEEEE
T ss_conf             899995-99999999999999879989997899999998532698777654578999899999999972-9899489897


Q ss_pred             -------------CCCCCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf             -------------34332010445878999866420124
Q gi|254780754|r   68 -------------CGSVGFLMNEYCIENLVERLSVAVEC   93 (264)
Q Consensus        68 -------------~G~lGFL~~~~~~~~~~~~l~~~~~~   93 (264)
                                   .|-.+||.-++..+.+.+.+.++...
T Consensus        83 ~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~~~~  121 (155)
T 1qkk_A           83 GHGDIPMAVQAIQDGAYDFIAKPFAADRLVQSARRAEEK  121 (155)
T ss_dssp             CGGGHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHH
T ss_conf             989999999999869988975999999999999999999


No 171
>3ehd_A Uncharacterized conserved protein; PSI,MCSG,PF05014, structural genomics, protein structure initiative; HET: MSE; 2.15A {Enterococcus faecalis}
Probab=25.91  E-value=29  Score=14.08  Aligned_cols=34  Identities=18%  Similarity=0.234  Sum_probs=26.0

Q ss_pred             HHCCEEEE-ECCC----HHHHHHHHHHHHCCCEEEEECCC
Q ss_conf             55779999-8795----48999999974128729941534
Q gi|254780754|r   35 EEADVIVV-LGGD----GFMLQSFHQSKEYDKPIYGMNCG   69 (264)
Q Consensus        35 ~~~Dlii~-iGGD----GT~L~a~~~~~~~~~PilGIn~G   69 (264)
                      +++|++|+ +.|.    ||...... +...++||+|+.+.
T Consensus        68 ~~aD~via~ldg~~~D~GT~~EiG~-A~algkpvi~~~~D  106 (162)
T 3ehd_A           68 LASDLLVALLDGPTIDAGVASEIGV-AYAKGIPVVALYTD  106 (162)
T ss_dssp             HTCSEEEEECCSSSCCHHHHHHHHH-HHHTTCCEEEECCC
T ss_pred             HHCCEEEEECCCCCCCCCHHHHHHH-HHHCCCEEEEEECC
T ss_conf             8699999984899999888999999-99869959999635


No 172
>2yr1_A 3-dehydroquinate dehydratase; amino acid biosynthesis, 3-dehydroquinase, structural genomics, NPPSFA; 2.00A {Geobacillus kaustophilus HTA426}
Probab=25.57  E-value=30  Score=14.04  Aligned_cols=15  Identities=20%  Similarity=-0.104  Sum_probs=6.8

Q ss_pred             EECCEEEEECCCCHH
Q ss_conf             103507982266504
Q gi|254780754|r  150 LVCDGLVVSTPIGST  164 (264)
Q Consensus       150 ~~~DGvivSTptGST  164 (264)
                      +.+|=+=++|..-|-
T Consensus       168 ~gaDivKia~~~~~~  182 (257)
T 2yr1_A          168 YGADIAKVAVMPKSP  182 (257)
T ss_dssp             TTCSEEEEEECCSSH
T ss_pred             HCCCEEEEEEECCCH
T ss_conf             289999999857988


No 173
>1thg_A Lipase; hydrolase(carboxylic esterase); HET: NAG NDG; 1.80A {Galactomyces geotrichum} SCOP: c.69.1.17
Probab=25.28  E-value=30  Score=14.00  Aligned_cols=38  Identities=21%  Similarity=0.265  Sum_probs=28.6

Q ss_pred             CEEEEECCC----------HHHHHHHHHHHHCCCEEEEEC--CCCCCCCC
Q ss_conf             799998795----------489999999741287299415--34332010
Q gi|254780754|r   38 DVIVVLGGD----------GFMLQSFHQSKEYDKPIYGMN--CGSVGFLM   75 (264)
Q Consensus        38 Dlii~iGGD----------GT~L~a~~~~~~~~~PilGIn--~G~lGFL~   75 (264)
                      =+|...||.          |+.+.....+...++-++.||  +|-+|||.
T Consensus       124 V~v~ihGG~f~~G~~~~~~~~~~~~~~~~~~~~vvvVtinYRlg~~Gfl~  173 (544)
T 1thg_A          124 VMVWIYGGAFVYGSSAAYPGNSYVKESINMGQPVVFVSINYRTGPFGFLG  173 (544)
T ss_dssp             EEEEECCCTTCCSGGGGCCSHHHHHHHHHTTCCCEEEEECCCCHHHHHCC
T ss_pred             EEEEEECCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEEECCCCCCCCCCC
T ss_conf             69998688646777866787301157775379979996277755314778


No 174
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=25.16  E-value=30  Score=13.99  Aligned_cols=13  Identities=15%  Similarity=0.337  Sum_probs=5.9

Q ss_pred             CCEEEEECCCCHH
Q ss_conf             3507982266504
Q gi|254780754|r  152 CDGLVVSTPIGST  164 (264)
Q Consensus       152 ~DGvivSTptGST  164 (264)
                      ..++++-|.+|+-
T Consensus       112 ~G~v~~G~SAGA~  124 (206)
T 3l4e_A          112 AGKLYIGESAGAV  124 (206)
T ss_dssp             TTCEEEEETHHHH
T ss_pred             CCCEEEEECHHHH
T ss_conf             7978999875887


No 175
>3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer, structural genomics, structural proteomics in europe, spine; 2.70A {Klebsiella pneumoniae}
Probab=24.94  E-value=30  Score=13.96  Aligned_cols=21  Identities=29%  Similarity=0.389  Sum_probs=15.7

Q ss_pred             HCCEEEEECCCHHHHHHHHHHH
Q ss_conf             5779999879548999999974
Q gi|254780754|r   36 EADVIVVLGGDGFMLQSFHQSK   57 (264)
Q Consensus        36 ~~Dlii~iGGDGT~L~a~~~~~   57 (264)
                      ++|+||.+|| |..+-+++...
T Consensus        92 ~~D~IiavGG-Gs~iD~aK~va  112 (387)
T 3bfj_A           92 QCDIIVTVGG-GSPHDCGKGIG  112 (387)
T ss_dssp             TCCEEEEEES-HHHHHHHHHHH
T ss_pred             CCCEEEECCC-CCCCCHHHHHH
T ss_conf             9988998088-64000888899


No 176
>1llf_A Lipase 3; candida cylindracea cholesterol esterase, sterol ester acylhydrolase,; HET: NAG F23; 1.40A {Candida cylindracea} SCOP: c.69.1.17 PDB: 1cle_A* 1lpm_A* 1lpn_A* 1lpo_A* 1lpp_A* 1lps_A* 1crl_A* 1trh_A* 1gz7_A*
Probab=24.06  E-value=32  Score=13.86  Aligned_cols=38  Identities=18%  Similarity=0.160  Sum_probs=27.7

Q ss_pred             CEEEEECCC----------HHHHHHHHHHHHCCCEEEEEC--CCCCCCCC
Q ss_conf             799998795----------489999999741287299415--34332010
Q gi|254780754|r   38 DVIVVLGGD----------GFMLQSFHQSKEYDKPIYGMN--CGSVGFLM   75 (264)
Q Consensus        38 Dlii~iGGD----------GT~L~a~~~~~~~~~PilGIn--~G~lGFL~   75 (264)
                      =+|...||-          |+.|.+.......++-++.||  +|-+|||.
T Consensus       116 V~V~ihGG~f~~gs~~~~~~~~~~~~~~~~~~~vVvVt~nYRLg~~Gfl~  165 (534)
T 1llf_A          116 VMLWIFGGGFEIGSPTIFPPAQMVTKSVLMGKPIIHVAVNYRVASWGFLA  165 (534)
T ss_dssp             EEEEECCSTTTSCCGGGSCCHHHHHHHHHTTCCCEEEEECCCCHHHHHCC
T ss_pred             EEEEECCCCCCCCCCCCCCCHHHCCHHHHCCCCEEEEEECCCCCCCCCCC
T ss_conf             99997988445788867780442112343158989999676645466667


No 177
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=23.88  E-value=32  Score=13.84  Aligned_cols=90  Identities=10%  Similarity=0.235  Sum_probs=55.8

Q ss_pred             CCEEEEEEECCCHHHHHHHHHHHH-HCCC------C----------CHHHCCEEEE----ECCCHH-HHHHHHHHHHCCC
Q ss_conf             650599995599899999999998-7078------8----------8455779999----879548-9999999741287
Q gi|254780754|r    4 NIQKIHFKASNAKKAQEAYDKFVK-IYGN------S----------TSEEADVIVV----LGGDGF-MLQSFHQSKEYDK   61 (264)
Q Consensus         4 ~~~ki~i~~~~~~~a~~~~~~l~~-~~~~------~----------~~~~~Dlii~----iGGDGT-~L~a~~~~~~~~~   61 (264)
                      .|.+|.+ .++.+...+..+.+.+ ....      .          ....+|+++.    =|+||. +++.++.. ..++
T Consensus         2 ~~~~VLI-vDD~~~~r~~l~~~L~~~~~~~~v~~a~~~~eal~~l~~~~~~DlvllD~~mP~~~G~e~l~~ir~~-~p~~   79 (154)
T 2qsj_A            2 SLTVVLI-VDDHHLIRAGAKNLLEGAFSGMRVEGAETVSDALAFLEADNTVDLILLDVNLPDAEAIDGLVRLKRF-DPSN   79 (154)
T ss_dssp             -CEEEEE-ECSCHHHHHHHHHHHHHHCTTEEEEEESSHHHHHHHHHTTCCCSEEEECC------CHHHHHHHHHH-CTTS
T ss_pred             CCCEEEE-EECCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHH-CCCC
T ss_conf             9999999-9499999999999997289984999966899999999745999789980888998889999999987-8899


Q ss_pred             EEEEEC-------------CCCCCCCCCCCCHHHHHHHHHHCCCCCC
Q ss_conf             299415-------------3433201044587899986642012432
Q gi|254780754|r   62 PIYGMN-------------CGSVGFLMNEYCIENLVERLSVAVECTF   95 (264)
Q Consensus        62 PilGIn-------------~G~lGFL~~~~~~~~~~~~l~~~~~~~~   95 (264)
                      ||+=+.             .|--|||.-+++.+++.+++.++..+..
T Consensus        80 ~iivlT~~~~~~~~~~a~~~Ga~gyl~K~~~~~~L~~aI~~v~~g~~  126 (154)
T 2qsj_A           80 AVALISGETDHELIRAALEAGADGFIPKSADPQVLIHAVSLILEGEI  126 (154)
T ss_dssp             EEEEC-----CHHHHHHHHTTCCBBCCTTSCHHHHHHHHHHHHTTCC
T ss_pred             CEEEEEEECCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCC
T ss_conf             79999802899999999985998899799999999999999987998


No 178
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=23.15  E-value=22  Score=14.91  Aligned_cols=21  Identities=14%  Similarity=0.089  Sum_probs=12.7

Q ss_pred             CCEEEEECCCCHHHHHHHCCC
Q ss_conf             350798226650446752298
Q gi|254780754|r  152 CDGLVVSTPIGSTAYNFSALG  172 (264)
Q Consensus       152 ~DGvivSTptGSTAY~lSaGG  172 (264)
                      .-.+++...|-..+..+...+
T Consensus       220 ~~~~ii~~~t~~~~~~~~~~l  240 (337)
T 2z0m_A          220 DKGVIVFVRTRNRVAKLVRLF  240 (337)
T ss_dssp             CSSEEEECSCHHHHHHHHTTC
T ss_pred             CCEEEEEEEEEHHHHHHHHHH
T ss_conf             862999998513579999865


No 179
>1f8y_A Nucleoside 2-deoxyribosyltransferase; active site, alpha/beta protein, biocatalyst, X- RAY crystallography; HET: 5MD; 2.40A {Lactobacillus leichmannii} SCOP: c.23.14.1 PDB: 1f8x_A*
Probab=22.95  E-value=33  Score=13.72  Aligned_cols=34  Identities=12%  Similarity=0.025  Sum_probs=25.8

Q ss_pred             HHCCEEEEE-CCC----HHHHHHHHHHHHCCCEEEEECCC
Q ss_conf             557799998-795----48999999974128729941534
Q gi|254780754|r   35 EEADVIVVL-GGD----GFMLQSFHQSKEYDKPIYGMNCG   69 (264)
Q Consensus        35 ~~~Dlii~i-GGD----GT~L~a~~~~~~~~~PilGIn~G   69 (264)
                      +++|++|++ .|+    ||...... +...++|++++..+
T Consensus        77 ~~aD~vva~l~~~~~d~Gt~~E~G~-A~a~~kpvi~~~~~  115 (157)
T 1f8y_A           77 KTNDIMLGVYIPDEEDVGLGMELGY-ALSQGKYVLLVIPD  115 (157)
T ss_dssp             HTSSEEEEECCGGGCCHHHHHHHHH-HHHTTCEEEEEECG
T ss_pred             HHCCEEEEEECCCCCCCCHHHHHHH-HHHCCCCEEEEECC
T ss_conf             8689999995898798667999999-99879968999668


No 180
>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A*
Probab=22.63  E-value=34  Score=13.68  Aligned_cols=85  Identities=15%  Similarity=0.325  Sum_probs=39.4

Q ss_pred             EEEEEEECCCHHHHHHHHHHHHHCCC-------CCH---------HHCCEEEE----ECCCHH-HHHHHHHHHHCCCEEE
Q ss_conf             05999955998999999999987078-------884---------55779999----879548-9999999741287299
Q gi|254780754|r    6 QKIHFKASNAKKAQEAYDKFVKIYGN-------STS---------EEADVIVV----LGGDGF-MLQSFHQSKEYDKPIY   64 (264)
Q Consensus         6 ~ki~i~~~~~~~a~~~~~~l~~~~~~-------~~~---------~~~Dlii~----iGGDGT-~L~a~~~~~~~~~Pil   64 (264)
                      +|+.+ .++++...+..+.+....+.       .+.         +.+|+++.    =|.||. +++.++......+||+
T Consensus         3 ~rvLi-vDD~~~~~~~l~~~L~~~~~~~~v~~a~~g~eal~~~~~~~pdlvllD~~mP~~dG~el~~~ir~~~~~~~~ii   81 (130)
T 1dz3_A            3 IKVCI-ADDNRELVSLLDEYISSQPDMEVIGTAYNGQDCLQMLEEKRPDILLLDIIMPHLDGLAVLERIRAGFEHQPNVI   81 (130)
T ss_dssp             EEEEE-ECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHHHCSSCCEEE
T ss_pred             CEEEE-EECCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCCEEE
T ss_conf             63999-97999999999999985899379999899999999998559999998289999988999999985599999799


Q ss_pred             EECC-------------CCCCCCCCCCCHHHHHHHHHHCC
Q ss_conf             4153-------------43320104458789998664201
Q gi|254780754|r   65 GMNC-------------GSVGFLMNEYCIENLVERLSVAV   91 (264)
Q Consensus        65 GIn~-------------G~lGFL~~~~~~~~~~~~l~~~~   91 (264)
                      -+..             |--+||.-+++.+++.+.+.++.
T Consensus        82 ~~t~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~~  121 (130)
T 1dz3_A           82 MLTAFGQEDVTKKAVELGASYFILKPFDMENLAHHIRQVY  121 (130)
T ss_dssp             EEEETTCHHHHHHHHHTTCEEEEECSSCCTTHHHHHHHHH
T ss_pred             EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH
T ss_conf             9978999999999998699799979999999999999998


No 181
>1rw7_A YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI superfamily, unknown function; 1.80A {Saccharomyces cerevisiae} SCOP: c.23.16.2 PDB: 1qvv_A* 1qvz_A 1qvw_A
Probab=22.38  E-value=34  Score=13.65  Aligned_cols=45  Identities=9%  Similarity=0.117  Sum_probs=34.8

Q ss_pred             CCCCHHHCCEEEEECCCHHH---------HHHHHHHHHCCCEEEEECCCCCCCC
Q ss_conf             78884557799998795489---------9999997412872994153433201
Q gi|254780754|r   30 GNSTSEEADVIVVLGGDGFM---------LQSFHQSKEYDKPIYGMNCGSVGFL   74 (264)
Q Consensus        30 ~~~~~~~~Dlii~iGGDGT~---------L~a~~~~~~~~~PilGIn~G~lGFL   74 (264)
                      .+.++++.|.++.-||=|.+         .+.++.+...++|+..|-.|-..++
T Consensus        92 ~~v~~~~ydav~ipGG~g~~~dl~~~~~l~~~~~~~~~~~k~v~aiChgp~~L~  145 (243)
T 1rw7_A           92 KEVNADDYQIFFASAGHGTLFDYPKAKDLQDIASEIYANGGVVAAVCHGPAIFD  145 (243)
T ss_dssp             GGCCGGGEEEEEECCSTTHHHHGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGT
T ss_pred             HHCCHHHCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHH
T ss_conf             788986786899569960376624302455999999976993688612168887


No 182
>2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A
Probab=22.33  E-value=34  Score=13.65  Aligned_cols=62  Identities=16%  Similarity=0.267  Sum_probs=39.5

Q ss_pred             EEEEEEECCCHHHHHHHHHHHHHCCCCCHHHCCEEEEECCCHHHHHHHHHHHH--CCCEEEEECCC
Q ss_conf             05999955998999999999987078884557799998795489999999741--28729941534
Q gi|254780754|r    6 QKIHFKASNAKKAQEAYDKFVKIYGNSTSEEADVIVVLGGDGFMLQSFHQSKE--YDKPIYGMNCG   69 (264)
Q Consensus         6 ~ki~i~~~~~~~a~~~~~~l~~~~~~~~~~~~Dlii~iGGDGT~L~a~~~~~~--~~~PilGIn~G   69 (264)
                      .++.+-.+...+-..+.+.+.++|...+  .|||+++=||=|-+=.|.+....  ..+|+++..-.
T Consensus        56 R~y~ik~~~~dDy~~m~evl~Rr~~~~~--~PDLilIDGGkgQL~~a~~~l~~~~~~i~~~~~~k~  119 (220)
T 2nrt_A           56 RRYKIEQDHPDDYESIRTVVKRRYSKHP--LPNLLFVDGGIGQVNAAIEALKEIGKDCPVVGLAKK  119 (220)
T ss_dssp             EEEEEECSSCCHHHHHHHHHHHHHTTSC--CCSEEEESSSHHHHHHHHHHHHHTTCCCCEEEECTT
T ss_pred             HHHCCCCCCCHHHHHHHHHHHHHCCCCC--CCEEEEEECCHHHHHHHHHHHHHCCCCCHHHCCCCC
T ss_conf             6625788897079999999998304589--985899819999999999998740776212203565


No 183
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=22.06  E-value=35  Score=13.61  Aligned_cols=59  Identities=22%  Similarity=0.336  Sum_probs=35.5

Q ss_pred             HCCEEEE----ECCCHH-HHHHHHHHH-HCCCEEEEECC-------------CCCCCCCCCCCHHHHHHHHHHCCCCC
Q ss_conf             5779999----879548-999999974-12872994153-------------43320104458789998664201243
Q gi|254780754|r   36 EADVIVV----LGGDGF-MLQSFHQSK-EYDKPIYGMNC-------------GSVGFLMNEYCIENLVERLSVAVECT   94 (264)
Q Consensus        36 ~~Dlii~----iGGDGT-~L~a~~~~~-~~~~PilGIn~-------------G~lGFL~~~~~~~~~~~~l~~~~~~~   94 (264)
                      .+|+|+.    =|-||. +++..|... ..++||+-+..             |--+|+.-++..+++.+.+......+
T Consensus        62 ~pdlvllD~~mP~~dG~el~~~ir~~~~~~~iPvI~lT~~~~~~~~~~~~~~Ga~~yl~KP~~~~~L~~~i~~~l~~~  139 (149)
T 1k66_A           62 RPAVILLDLNLPGTDGREVLQEIKQDEVLKKIPVVIMTTSSNPKDIEICYSYSISSYIVKPLEIDRLTETVQTFIKYW  139 (149)
T ss_dssp             CCSEEEECSCCSSSCHHHHHHHHTTSTTGGGSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHH
T ss_conf             999899808899998589999998586669995899978999999999998799799979899999999999999998


No 184
>2b4y_A NAD-dependent deacetylase sirtuin-5; histone deacetylase, structural genomics, structural genomics consortium, SGC, hydrolase; HET: APR EPE; 1.90A {Homo sapiens} SCOP: c.31.1.5 PDB: 2nyr_A*
Probab=21.94  E-value=35  Score=13.60  Aligned_cols=23  Identities=30%  Similarity=0.614  Sum_probs=14.5

Q ss_pred             HHCCEEEEECCCHHHHHHHHHHHHCCCEEE
Q ss_conf             557799998795489999999741287299
Q gi|254780754|r   35 EEADVIVVLGGDGFMLQSFHQSKEYDKPIY   64 (264)
Q Consensus        35 ~~~Dlii~iGGDGT~L~a~~~~~~~~~Pil   64 (264)
                      ++++-|+++.|=|-  .+     ..++|=+
T Consensus        17 ~~ak~ivv~TGAGi--St-----~SGIPdF   39 (271)
T 2b4y_A           17 AKAKHIVIISGAGV--SA-----ESGVPTF   39 (271)
T ss_dssp             HHCSEEEEEECGGG--GG-----GGTC---
T ss_pred             HHCCCEEEEECHHH--HH-----HHCCCCE
T ss_conf             85895899957054--06-----3499984


No 185
>1sfl_A 3-dehydroquinate dehydratase; 3-dehydroquinase, enzyme turnover, shikimate pathway, lyase; 1.90A {Staphylococcus aureus subsp} SCOP: c.1.10.1 PDB: 1sfj_A*
Probab=21.88  E-value=35  Score=13.59  Aligned_cols=41  Identities=7%  Similarity=0.071  Sum_probs=19.0

Q ss_pred             HHHHHHHHHH--CCCEEE-EECCCCC-CCCCCCCCHHHHHHHHHHCC
Q ss_conf             9999999741--287299-4153433-20104458789998664201
Q gi|254780754|r   49 MLQSFHQSKE--YDKPIY-GMNCGSV-GFLMNEYCIENLVERLSVAV   91 (264)
Q Consensus        49 ~L~a~~~~~~--~~~Pil-GIn~G~l-GFL~~~~~~~~~~~~l~~~~   91 (264)
                      +...+.....  .++|++ .+.+..- |..  +.+.++..+.+..+.
T Consensus        49 i~~~~~~l~~~~~~~piI~T~R~~~eGG~~--~~~~~~~~~ll~~~~   93 (238)
T 1sfl_A           49 VAEMITKLKVMQDSFKLLVTYRTKLQGGYG--QFTNDSYLNLISDLA   93 (238)
T ss_dssp             HHHHHHHHC---CCSEEEEECCBGGGTSCB--CCCHHHHHHHHHHGG
T ss_pred             HHHHHHHHHHHCCCCCEEEEECCHHHCCCC--CCCHHHHHHHHHHHH
T ss_conf             999999998617998389997167779998--799899999999999


No 186
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=21.42  E-value=36  Score=13.53  Aligned_cols=34  Identities=9%  Similarity=0.006  Sum_probs=23.4

Q ss_pred             HHCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf             55779999879548999999974128729941534
Q gi|254780754|r   35 EEADVIVVLGGDGFMLQSFHQSKEYDKPIYGMNCG   69 (264)
Q Consensus        35 ~~~Dlii~iGGDGT~L~a~~~~~~~~~PilGIn~G   69 (264)
                      +++|+|++.|.|.+.. .+.......+|+.+++..
T Consensus        61 ~~~D~Ii~~~~~a~~~-~~~~~~~~~~v~~~v~~~   94 (295)
T 3lft_A           61 NGNDLVVGIATPAAQG-LASATKDLPVIMAAITDP   94 (295)
T ss_dssp             SSCSEEEEESHHHHHH-HHHHCSSSCEEEESCSCT
T ss_pred             CCCCEEEECCCHHHHH-HHHHHHHCCCCEEEECCC
T ss_conf             5888899669849999-998665246622674156


No 187
>3kwm_A Ribose-5-phosphate isomerase A; structural genomics, IDP02119, center for structural genomics of infectious diseases, csgid; 2.32A {Francisella tularensis subsp}
Probab=21.38  E-value=33  Score=13.74  Aligned_cols=27  Identities=7%  Similarity=0.124  Sum_probs=20.6

Q ss_pred             HCCEEEEECCCHHHHHHHHHHHHCCCE
Q ss_conf             577999987954899999997412872
Q gi|254780754|r   36 EADVIVVLGGDGFMLQSFHQSKEYDKP   62 (264)
Q Consensus        36 ~~Dlii~iGGDGT~L~a~~~~~~~~~P   62 (264)
                      +..++|-+|+=-|.-..++........
T Consensus        25 ~~gmvIGLGtGSTv~~~i~~L~~~~~~   51 (224)
T 3kwm_A           25 TTEITLGVGTGSTVGFLIEELVNYRDK   51 (224)
T ss_dssp             CSSEEEEECCSHHHHHHHHHGGGCTTT
T ss_pred             CCCCEEEECCHHHHHHHHHHHHHCCCC
T ss_conf             899999958669999999999960667


No 188
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, nysgrc, NEW YORK structural genomix research consortium; 2.00A {Bermanella marisrubri}
Probab=21.25  E-value=36  Score=13.51  Aligned_cols=58  Identities=17%  Similarity=0.260  Sum_probs=25.8

Q ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHCCCC-----CH---------HHCCEEEEE----CCCHH-HHHHHHHHHHCCCE
Q ss_conf             65059999559989999999999870788-----84---------557799998----79548-99999997412872
Q gi|254780754|r    4 NIQKIHFKASNAKKAQEAYDKFVKIYGNS-----TS---------EEADVIVVL----GGDGF-MLQSFHQSKEYDKP   62 (264)
Q Consensus         4 ~~~ki~i~~~~~~~a~~~~~~l~~~~~~~-----~~---------~~~Dlii~i----GGDGT-~L~a~~~~~~~~~P   62 (264)
                      +-+||-++.++ +...+..+...+..+-.     ..         ..+|+|++=    +.||. +++.+|.......|
T Consensus         5 ~~krILiVDDd-~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~pdlillD~~mP~~dG~el~~~ir~~~~~~~~   81 (132)
T 3lte_A            5 QSKRILVVDDD-QAMAAAIERVLKRDHWQVEIAHNGFDAGIKLSTFEPAIMTLDLSMPKLDGLDVIRSLRQNKVANQP   81 (132)
T ss_dssp             --CEEEEECSC-HHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHTCCSEEEEESCBTTBCHHHHHHHHHTTTCSSCC
T ss_pred             CCCEEEEEECC-HHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCC
T ss_conf             89869999799-999999999999889999998899999999974799999996898788899999999845888989


No 189
>1m2k_A Silent information regulator 2; protein-ligand complex, gene regulation; HET: APR; 1.47A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1m2g_A* 1m2h_A* 1m2j_A* 1m2n_A* 1ici_A*
Probab=21.10  E-value=36  Score=13.49  Aligned_cols=13  Identities=38%  Similarity=0.675  Sum_probs=9.4

Q ss_pred             HCCEEEEECCCHH
Q ss_conf             5779999879548
Q gi|254780754|r   36 EADVIVVLGGDGF   48 (264)
Q Consensus        36 ~~Dlii~iGGDGT   48 (264)
                      +++-|+++.|=|-
T Consensus        11 ~a~~ivvltGAGi   23 (249)
T 1m2k_A           11 ESKYLVALTGAGV   23 (249)
T ss_dssp             TCSSEEEEECGGG
T ss_pred             HCCCEEEEECCHH
T ss_conf             6993899978133


No 190
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein structure initiative, structural genomics; 2.59A {Cytophaga hutchinsonii atcc 33406}
Probab=20.89  E-value=37  Score=13.46  Aligned_cols=90  Identities=9%  Similarity=0.136  Sum_probs=52.9

Q ss_pred             CCCEEEEEEECCCHHHHHHHHHHHHHCCC-------C--------------CHHHCCEEEEE----CCCHH-HHHHHHHH
Q ss_conf             76505999955998999999999987078-------8--------------84557799998----79548-99999997
Q gi|254780754|r    3 RNIQKIHFKASNAKKAQEAYDKFVKIYGN-------S--------------TSEEADVIVVL----GGDGF-MLQSFHQS   56 (264)
Q Consensus         3 ~~~~ki~i~~~~~~~a~~~~~~l~~~~~~-------~--------------~~~~~Dlii~i----GGDGT-~L~a~~~~   56 (264)
                      +++++|.++. +++....+...+.+..+.       .              ..+.+|+|++=    |.||- +++.++..
T Consensus         7 ~k~~~ILiVD-Dd~~~~~~l~~~l~~~g~~~~v~~a~~g~~Al~~l~~~~~~~~~pdliilD~~MP~~dG~el~~~ir~~   85 (146)
T 3ilh_A            7 RKIDSVLLID-DDDIVNFLNTTIIRMTHRVEEIQSVTSGNAAINKLNELYAAGRWPSIICIDINMPGINGWELIDLFKQH   85 (146)
T ss_dssp             CCEEEEEEEC-SCHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHTSSCCCSEEEEESSCSSSCHHHHHHHHHHH
T ss_pred             CCCCEEEEEE-CCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHH
T ss_conf             8899799997-989999999999997799818999899999999998631027899999984898999759999999860


Q ss_pred             H---HCCCEEEEECC--------------CCCCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf             4---12872994153--------------4332010445878999866420124
Q gi|254780754|r   57 K---EYDKPIYGMNC--------------GSVGFLMNEYCIENLVERLSVAVEC   93 (264)
Q Consensus        57 ~---~~~~PilGIn~--------------G~lGFL~~~~~~~~~~~~l~~~~~~   93 (264)
                      .   ...+|++-+.+              |--+||+-++..+.+.+.+.+....
T Consensus        86 ~~~~~~~~~viilts~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~l~~~l~~  139 (146)
T 3ilh_A           86 FQPMKNKSIVCLLSSSLDPRDQAKAEASDWVDYYVSKPLTANALNNLYNKVLNE  139 (146)
T ss_dssp             CGGGTTTCEEEEECSSCCHHHHHHHHHCSSCCEEECSSCCHHHHHHHHHHHHCC
T ss_pred             CCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
T ss_conf             851248871999978899899999999779988997989999999999999971


No 191
>2abw_A PDX2 protein, glutaminase; PLP-synthase, vitamin B6, malaria, transferase; HET: PG4; 1.62A {Plasmodium falciparum} SCOP: c.23.16.1
Probab=20.84  E-value=37  Score=13.46  Aligned_cols=65  Identities=17%  Similarity=0.210  Sum_probs=33.0

Q ss_pred             EEEEEEECC--CHHHHHHHHHHHHH-----C--CCCCHHHCCEEEEECCCHH------------HHHHHHHH-HHCCCEE
Q ss_conf             059999559--98999999999987-----0--7888455779999879548------------99999997-4128729
Q gi|254780754|r    6 QKIHFKASN--AKKAQEAYDKFVKI-----Y--GNSTSEEADVIVVLGGDGF------------MLQSFHQS-KEYDKPI   63 (264)
Q Consensus         6 ~ki~i~~~~--~~~a~~~~~~l~~~-----~--~~~~~~~~Dlii~iGGDGT------------~L~a~~~~-~~~~~Pi   63 (264)
                      .||++++-.  ..+-.+..+.+...     +  ..++.+++|.+|.=||--+            +..++..+ ...++||
T Consensus         4 ~kigvl~~~Gn~~~~~~al~~lg~~~~~v~~v~~~~~l~~~d~lILPG~gs~~~~~~~~~~~~~~~~~i~~~~~~~~~Pi   83 (227)
T 2abw_A            4 ITIGVLSLQGDFEPHINHFIKLQIPSLNIIQVRNVHDLGLCDGLVIPGGESTTVRRCCAYENDTLYNALVHFIHVLKKPI   83 (227)
T ss_dssp             EEEEEECTTSCCHHHHHHHHTTCCTTEEEEEECSHHHHHTCSEEEECCSCHHHHHHHTTHHHHHHHHHHHHHHHTSCCCE
T ss_pred             CEEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCHHHHHCCCEEEECCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCCE
T ss_conf             78999955886999999999837898479994998998279999998996599999999876677789999998539917


Q ss_pred             EEECCCC
Q ss_conf             9415343
Q gi|254780754|r   64 YGMNCGS   70 (264)
Q Consensus        64 lGIn~G~   70 (264)
                      |||=.|-
T Consensus        84 lGIClG~   90 (227)
T 2abw_A           84 WGTCAGC   90 (227)
T ss_dssp             EEETHHH
T ss_pred             EEECHHH
T ss_conf             9850568


No 192
>3hbm_A UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter jejuni subsp} PDB: 3hbn_A*
Probab=20.58  E-value=37  Score=13.42  Aligned_cols=22  Identities=14%  Similarity=0.114  Sum_probs=12.5

Q ss_pred             ECCEEEEECCCCHHHHHHHCCC-EE
Q ss_conf             0350798226650446752298-17
Q gi|254780754|r  151 VCDGLVVSTPIGSTAYNFSALG-PI  174 (264)
Q Consensus       151 ~~DGvivSTptGSTAY~lSaGG-pI  174 (264)
                      +||.+|.  +.|+|.|=+.+=| |.
T Consensus       225 ~ad~vI~--~gG~T~~E~~~~g~P~  247 (282)
T 3hbm_A          225 ESNKLII--SASSLVNEALLLKANF  247 (282)
T ss_dssp             TEEEEEE--ESSHHHHHHHHTTCCE
T ss_pred             HCCEEEE--CCCHHHHHHHHHCCCE
T ss_conf             6899998--8864899999959998


No 193
>1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism; HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP: e.22.1.2 PDB: 1jpu_A* 1jqa_A*
Probab=20.49  E-value=37  Score=13.41  Aligned_cols=33  Identities=27%  Similarity=0.364  Sum_probs=25.4

Q ss_pred             HHCCEEEEECCCHHHHHHHHHHH-HCCCEEEEECC
Q ss_conf             55779999879548999999974-12872994153
Q gi|254780754|r   35 EEADVIVVLGGDGFMLQSFHQSK-EYDKPIYGMNC   68 (264)
Q Consensus        35 ~~~Dlii~iGGDGT~L~a~~~~~-~~~~PilGIn~   68 (264)
                      .++|+||.+|| |+.+-+++... ..++|++.|-+
T Consensus        85 ~~~D~IvavGG-Gs~~D~aK~~A~~~~~p~i~IPT  118 (370)
T 1jq5_A           85 AEAAIVIGVGG-GKTLDTAKAVADELDAYIVIVPT  118 (370)
T ss_dssp             TTCSEEEEEES-HHHHHHHHHHHHHHTCEEEEEES
T ss_pred             CCCCEEEECCC-CCCCCHHHHHHCCCCCCEEEECC
T ss_conf             48878997378-63020121221014663255236


No 194
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} PDB: 2zwm_A
Probab=20.34  E-value=37  Score=13.39  Aligned_cols=82  Identities=20%  Similarity=0.317  Sum_probs=43.1

Q ss_pred             EEEEEECCCHHHHHHHHHHHHHCCC-----CC---------HHHCCEEEEE----CCCHH-HHHHHHHHHHCCCEEEEEC
Q ss_conf             5999955998999999999987078-----88---------4557799998----79548-9999999741287299415
Q gi|254780754|r    7 KIHFKASNAKKAQEAYDKFVKIYGN-----ST---------SEEADVIVVL----GGDGF-MLQSFHQSKEYDKPIYGMN   67 (264)
Q Consensus         7 ki~i~~~~~~~a~~~~~~l~~~~~~-----~~---------~~~~Dlii~i----GGDGT-~L~a~~~~~~~~~PilGIn   67 (264)
                      ||-++.++..-+..+...|.. .+-     ..         ...+|+++.=    |.||. +++..+.  ..+.|++-+-
T Consensus         4 rILiVDDd~~~~~~l~~~L~~-~g~~v~~a~~~~~al~~l~~~~~dlii~D~~mP~~~G~e~~~~~r~--~~~~~ii~lt   80 (120)
T 3f6p_A            4 KILVVDDEKPIADILEFNLRK-EGYEVHCAHDGNEAVEMVEELQPDLILLDIMLPNKDGVEVCREVRK--KYDMPIIMLT   80 (120)
T ss_dssp             EEEEECSCHHHHHHHHHHHHH-TTCEEEEESSHHHHHHHHHTTCCSEEEEETTSTTTHHHHHHHHHHT--TCCSCEEEEE
T ss_pred             CEEEEECCHHHHHHHHHHHHH-CCCEEEEECCHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHH--CCCCCEEEEE
T ss_conf             199993999999999999998-8999999899999999997189999998299999999999999981--6899589997


Q ss_pred             -------------CCCCCCCCCCCCHHHHHHHHHHCC
Q ss_conf             -------------343320104458789998664201
Q gi|254780754|r   68 -------------CGSVGFLMNEYCIENLVERLSVAV   91 (264)
Q Consensus        68 -------------~G~lGFL~~~~~~~~~~~~l~~~~   91 (264)
                                   .|--+||.-++..+++...+....
T Consensus        81 ~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~l  117 (120)
T 3f6p_A           81 AKDSEIDKVIGLEIGADDYVTKPFSTRELLARVKANL  117 (120)
T ss_dssp             ESSCHHHHHHHHHTTCCEEEEESCCHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH
T ss_conf             6799999999997599989979999999999999997


Done!