RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780754|ref|YP_003065167.1| inorganic
polyphosphate/ATP-NAD kinase [Candidatus Liberibacter asiaticus str.
psy62]
(264 letters)
>gnl|CDD|30410 COG0061, COG0061, Predicted sugar kinase [Carbohydrate transport
and metabolism].
Length = 281
Score = 160 bits (406), Expect = 3e-40
Identities = 76/270 (28%), Positives = 120/270 (44%), Gaps = 18/270 (6%)
Query: 1 MDRNIQKIHFKASNAKKAQEAYDKFV--KIYGNSTSEEADVIVVLGGDGFMLQSFHQSKE 58
R + + FK + QE ++ Y + E+AD+IVVLGGDG +L++
Sbjct: 18 AKRLYEFLKFKGVTVEVDQELAEELKDFADYVDDDEEKADLIVVLGGDGTLLRAARLLAR 77
Query: 59 YDKPIYGMNCGSVGFLMNEYC--IENLVERLSVAVECTFHP---LKMTVFDYDNSICAEN 113
D P+ G+N G +GFL + +E ++ L + E L+++V D
Sbjct: 78 LDIPVLGINLGHLGFLTDFEPDELEKALDAL-LEGEYRIEERLLLEVSVNRGDIRRA--- 133
Query: 114 ILAINEVSIIRKPGQNQLVQAAKLEVKVDDQVRLPELVCDGLVVSTPIGSTAYNFSALGP 173
LA+NEV I R + + EV +DD DGL+VSTP GSTAYN SA GP
Sbjct: 134 -LALNEVVIHRGSPA----KMIEFEVYIDD-EFFESFRGDGLIVSTPTGSTAYNLSAGGP 187
Query: 174 ILPLESRHLLLTPVSPFKPRRWHGAILPNDVMIEIQVLEHKQRPVIATADRLAIEPVSRI 233
IL + LTP+ P + +LP+ + I+VL +R + D + ++
Sbjct: 188 ILHPGLDAIQLTPICPHSL-SFRPLVLPSSSTVRIEVLLTPKRDAVVVVDGQELLLINPG 246
Query: 234 NVTQSSDITMRILSDSHRSWSDRILTAQFS 263
+ + + RS+ D +
Sbjct: 247 DRIEIRRSPYKARFIRLRSYDDFFERLRSK 276
>gnl|CDD|144927 pfam01513, NAD_kinase, ATP-NAD kinase. Members of this family
include ATP-NAD kinases EC:2.7.1.23, which catalyses the
phosphorylation of NAD to NADP utilising ATP and other
nucleoside triphosphates as well as inorganic
polyphosphate as a source of phosphorus. Also includes
NADH kinases EC:2.7.1.86.
Length = 243
Score = 106 bits (267), Expect = 6e-24
Identities = 66/209 (31%), Positives = 106/209 (50%), Gaps = 11/209 (5%)
Query: 35 EEADVIVVLGGDGFMLQSFHQSKEYDKPIYGMNCGSVGFLMNEYCIENLVERLSVAVECT 94
E D+IVVLGGDG L + ++D PI G+N G++GFL E+ E + L +E
Sbjct: 34 EGVDLIVVLGGDGTALDAARLLGDHDIPILGINTGTLGFL-TEFSPEEAAKLLDALLEGE 92
Query: 95 FHP---LKMTVFDYDNSICAENILAINEVSIIRKPGQNQLVQAAKLEVKVDDQVRLPELV 151
+ + V + LA+NEV II P + ++EV +D ++ L +
Sbjct: 93 YKIEKRELLDVIVRRSKRLLIVDLALNEVVIIGGPASTMI----EIEVYIDGEL-LESIR 147
Query: 152 CDGLVVSTPIGSTAYNFSALGPILPLESRHLLLTPVSPFKPRRWHGAILPNDVMIEIQVL 211
DGL+VSTP GSTAY+ SA GPI+ +LLTP+ P ++P+ + I++
Sbjct: 148 GDGLIVSTPTGSTAYSLSAGGPIISPGVLAILLTPICPHS-LSSRPIVVPSSSKLRIRLD 206
Query: 212 EHKQRPVIATADR-LAIEPVSRINVTQSS 239
++ ++ R L ++P + V +S
Sbjct: 207 SKEEALLVLDGQRELDLKPGDEVTVRKSP 235
>gnl|CDD|37389 KOG2178, KOG2178, KOG2178, Predicted sugar kinase [Carbohydrate
transport and metabolism].
Length = 409
Score = 75.8 bits (186), Expect = 1e-14
Identities = 51/188 (27%), Positives = 87/188 (46%), Gaps = 29/188 (15%)
Query: 38 DVIVVLGGDGFMLQSFHQSKEYDKPIYGMNCGSVGFLMN-----------EYCIENLVER 86
D+I+ LGGDG +L + + P+ + GS+GFL
Sbjct: 170 DLIITLGGDGTVLYASSLFQRSVPPVLSFSLGSLGFLTPFPFANFQEQLARVLNGRAAVN 229
Query: 87 LSVAVECTFHPLKMTVFDYDNSICAENILAINEVSIIRKPGQNQLVQAAKLEVKVDDQVR 146
L + + C+ + + A + +NEV I R P + L++ VDD++
Sbjct: 230 LRMRLRCSLKRKDLAEKTH----AASSHYVLNEVVIDRGPSP----FLSNLDLYVDDKL- 280
Query: 147 LPELVCDGLVVSTPIGSTAYNFSALGPILPLESRHLLLTPVSP----FKPRRWHGAILPN 202
+ ++ DGL+V+TP GSTAY+ SA G ++ +L+TP+ P F+P ILP+
Sbjct: 281 ITKVQGDGLIVATPTGSTAYSASAGGSLVHPSVPAILVTPICPHSLSFRP-----IILPD 335
Query: 203 DVMIEIQV 210
+ ++V
Sbjct: 336 SSELRVEV 343
>gnl|CDD|39382 KOG4180, KOG4180, KOG4180, Predicted kinase [General function
prediction only].
Length = 395
Score = 37.3 bits (86), Expect = 0.004
Identities = 39/177 (22%), Positives = 68/177 (38%), Gaps = 48/177 (27%)
Query: 36 EADVIVVLGGDGFMLQSFHQSKEYDKPIYGMNC---GSVGFLM----NEYCIENLVERLS 88
AD+++ +GGDG L + + + KP+ G+N GS G L + +L+
Sbjct: 105 WADMVISVGGDGTFLLAASRVIDDSKPVIGVNTDPTGSEGHLCLPDKYPSNPAGALCKLT 164
Query: 89 VA--------------VECTFHPLKMTVFDYDNSICAEN--------------------- 113
V P + + D S +
Sbjct: 165 SGNFEWVLRQRIRGTVVGDDGIPDPIDLHDQQLSDNQRSSAKEIEETLLSHSEAVEIVAL 224
Query: 114 -ILAINEVSIIRKPGQNQLVQAAKLEVKVDDQVRLPELVCDGLVVSTPIGSTAYNFS 169
+LA+NEV I G++ + + E+ +DD+ + + GLVV T GST++ F+
Sbjct: 225 PVLALNEVFI----GESLSARVSYYEISIDDKDGVKQ-KSSGLVVCTGTGSTSWTFN 276
>gnl|CDD|132848 cd07209, Pat_hypo_Ecoli_Z1214_like, Hypothetical patatin similar to
Z1214 protein of Escherichia coli. Patatin-like
phospholipase similar to Z1214 protein of Escherichia
coli. This family predominantly consists of bacterial
patatin glycoproteins and some representatives from
eukaryotes and archaea. The patatin protein accounts for
up to 40% of the total soluble protein in potato tubers.
Patatin is a storage protein, but it also has the
enzymatic activity of a lipid acyl hydrolase, catalyzing
the cleavage of fatty acids from membrane lipids.
Members of this family have also been found in
vertebrates.
Length = 215
Score = 29.6 bits (67), Expect = 0.98
Identities = 16/72 (22%), Positives = 26/72 (36%), Gaps = 18/72 (25%)
Query: 138 EVKVDDQVRLPELVCDGLVVS-TPIGSTAYNFSALGPILPLESRHLLLTPVSPFKPRRWH 196
V++D DG VV TP+ P + L + +++ +S R
Sbjct: 130 PVEIDG-----RYYWDGGVVDNTPLS----------PAIDLGADEIIVVSLSD--KGRDD 172
Query: 197 GAILPNDVMIEI 208
P +IEI
Sbjct: 173 RKGTPPTTLIEI 184
>gnl|CDD|153240 cd03146, GAT1_Peptidase_E, Type 1 glutamine amidotransferase
(GATase1)-like domain found in peptidase E. Type 1
glutamine amidotransferase (GATase1)-like domain found
in peptidase E. This group contains proteins similar to
the aspartyl dipeptidases Salmonella typhimurium
peptidase E and Xenopus laevis peptidase E. In bacteria
peptidase E is believed to play a role in degrading
peptides generated by intracellular protein breakdown or
imported into the cell as nutrient sources. Peptidase E
uniquely hydrolyses only Asp-X dipeptides (where X is
any amino acid), and one tripeptide Asp-Gly-Gly.
Peptidase E is believed to be a serine peptidase having
a Ser-His-Glu catalytic triad which differs from the
Cys-His-Glu catalytic triad typical of GATase1 domains
by having a Ser in place of the reactive Cys at the
nucleophile elbow. Xenopus PepE is developmentally
regulated in response to thyroid hormone and, it is
thought to play a role in apoptosis during tail
reabsorption.
Length = 212
Score = 29.6 bits (67), Expect = 1.1
Identities = 14/46 (30%), Positives = 19/46 (41%), Gaps = 10/46 (21%)
Query: 35 EEADVIVVLGGDGF-MLQSFH---------QSKEYDKPIYGMNCGS 70
EADVI V GG+ F +L + + E G + GS
Sbjct: 79 LEADVIYVGGGNTFNLLAQWREHGLDAILKAALERGVVYIGWSAGS 124
>gnl|CDD|107377 cd06382, PBP1_iGluR_Kainate, N-terminal
leucine/isoleucine/valine-binding protein (LIVBP)-like
domain of the kainate receptors. N-terminal
leucine/isoleucine/valine-binding protein (LIVBP)-like
domain of the kainate receptors, non-NMDA ionotropic
receptors which respond to the neurotransmitter
glutamate. While this N-terminal domain belongs to the
periplasmic-binding fold type I superfamily, the
glutamate-binding domain of the iGluR is structurally
homologous to the periplasmic-binding fold type II. The
LIVBP-like domain of iGluRs is thought to play a role in
the initial assembly of iGluR subunits, but it is not
well understood how this domain is arranged and
functions in intact iGluR. Kainate receptors have five
subunits, GluR5, GluR6, GluR7, KA1, and KA2, which are
structurally similar to AMPA and NMDA subunits of
ionotropic glutamate receptors. KA1 and KA2 subunits can
only form functional receptors with one of the GluR5-7
subunits. Moreover, GluR5-7 can also form functional
homomeric receptor channels activated by kainate and
glutamate when expressed in heterologous systems.
Kainate receptors are involved in excitatory
neurotransmission by activating postsynaptic receptors
and in inhibitory neurotransmission by modulating
release of the inhibitory neurotransmitter GABA through
a presynaptic mechanism. Kainate receptors are closely
related to AMAP receptors. In contrast of AMPA
receptors, kainate receptors play only a minor role in
signaling at synapses and their function is not well
defined.
Length = 327
Score = 27.6 bits (62), Expect = 3.5
Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Query: 101 TVFDYDNSICAENIL--AINEVSIIRKPGQNQLVQAAKLEVKVDDQVRLPELVCD 153
+FD D+ E AI+ ++ ++ N ++ VK DD + VCD
Sbjct: 4 AIFDDDDDSGEELAFRYAIDRINREKELLANTTLEYDIKRVKPDDSFETTKKVCD 58
>gnl|CDD|143508 cd06841, PLPDE_III_MccE_like, Type III Pyridoxal 5-phosphate
(PLP)-Dependent Enzyme MccE. This subfamily is composed
of uncharacterized proteins with similarity to
Escherichia coli MccE, a hypothetical protein that is
homologous to eukaryotic ornithine decarboxylase (ODC)
and diaminopimelate decarboxylase (DapDC). ODC and DapDC
are fold type III PLP-dependent enzymes that contain an
N-terminal PLP-binding TIM-barrel domain and a
C-terminal beta-sandwich domain, similar to bacterial
alanine racemases. ODC participates in the formation of
putrescine by catalyzing the decarboxylation of
ornithine, the first step in polyamine biosynthesis.
DapDC participates in the last step of lysine
biosynthesis, the conversion of
meso-2,6-diaminoheptanedioate to L-lysine. Most members
of this subfamily share the same domain architecture as
ODC and DapDC. A few members, including Escherichia coli
MccE, contain an additional acetyltransferase domain at
the C-terminus.
Length = 379
Score = 27.6 bits (62), Expect = 3.6
Identities = 17/62 (27%), Positives = 24/62 (38%), Gaps = 5/62 (8%)
Query: 186 PVSPFKPRRWHGAILPNDVM----IEIQVLEHKQR-PVIATADRLAIEPVSRINVTQSSD 240
P+ +P + DV +E VL P + D LAI V N+TQS+
Sbjct: 305 PILVLRPGKEDPTSKNYDVYGFNCMESDVLFPNVPLPPLNVGDILAIRNVGAYNMTQSNQ 364
Query: 241 IT 242
Sbjct: 365 FI 366
>gnl|CDD|33539 COG3744, COG3744, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 130
Score = 26.4 bits (58), Expect = 8.5
Identities = 12/39 (30%), Positives = 18/39 (46%)
Query: 223 DRLAIEPVSRINVTQSSDITMRILSDSHRSWSDRILTAQ 261
D L + + +T + I R L H+ DRI+ AQ
Sbjct: 67 DALRRNGIELLPITPAHAIAARALPLHHKDPFDRIIIAQ 105
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.320 0.135 0.392
Gapped
Lambda K H
0.267 0.0730 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 3,091,306
Number of extensions: 158761
Number of successful extensions: 383
Number of sequences better than 10.0: 1
Number of HSP's gapped: 376
Number of HSP's successfully gapped: 14
Length of query: 264
Length of database: 6,263,737
Length adjustment: 92
Effective length of query: 172
Effective length of database: 4,275,709
Effective search space: 735421948
Effective search space used: 735421948
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.3 bits)