RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780754|ref|YP_003065167.1| inorganic
polyphosphate/ATP-NAD kinase [Candidatus Liberibacter asiaticus str.
psy62]
(264 letters)
>gnl|CDD|179876 PRK04761, ppnK, inorganic polyphosphate/ATP-NAD kinase; Reviewed.
Length = 246
Score = 353 bits (908), Expect = 3e-98
Identities = 130/252 (51%), Positives = 164/252 (65%), Gaps = 7/252 (2%)
Query: 12 ASNAKKAQEAYDKFVKIYGNSTSEEADVIVVLGGDGFMLQSFHQSKEYDKPIYGMNCGSV 71
AS +AQ A ++ VK YG+ EEADVIV LGGDGFMLQ+ H+ KP+YGMN GSV
Sbjct: 1 ASPTPEAQAALEELVKRYGDVPIEEADVIVALGGDGFMLQTLHRYMNSGKPVYGMNRGSV 60
Query: 72 GFLMNEYCIENLVERLSVAVECTFHPLKMTVFDYDNSICAENILAINEVSIIRKPGQNQL 131
GFLMNEY ++L+ER++ A HPL+MT D + LAINEVS+ R Q
Sbjct: 61 GFLMNEYSEDDLLERIAAAEPTVLHPLRMTATDVSGEVH--EALAINEVSLFR-----QT 113
Query: 132 VQAAKLEVKVDDQVRLPELVCDGLVVSTPIGSTAYNFSALGPILPLESRHLLLTPVSPFK 191
QAAKL + +D +VR+ ELVCDG++V+TP GSTAYN SA GPILPL S L LTP+SPF+
Sbjct: 114 RQAAKLRISIDGKVRMEELVCDGVLVATPAGSTAYNLSAHGPILPLGSNLLALTPISPFR 173
Query: 192 PRRWHGAILPNDVMIEIQVLEHKQRPVIATADRLAIEPVSRINVTQSSDITMRILSDSHR 251
PRRW GA+LPN + VLE +RPV A AD + V + + + DIT+ +L D
Sbjct: 174 PRRWRGALLPNSATVRFDVLEPDKRPVSAVADNTEVRDVVEVTIREDKDITVTLLFDPGH 233
Query: 252 SWSDRILTAQFS 263
S +RIL QF
Sbjct: 234 SLEERILAEQFG 245
>gnl|CDD|179635 PRK03708, ppnK, inorganic polyphosphate/ATP-NAD kinase;
Provisional.
Length = 277
Score = 92.5 bits (230), Expect = 1e-19
Identities = 64/193 (33%), Positives = 102/193 (52%), Gaps = 20/193 (10%)
Query: 36 EADVIVVLGGDGFMLQSFHQSKEYDKPIYGMNCGSVGFLMNEYCIENLVERLSVAVECTF 95
+ D I+ +GGDG +L+ H++K+ D PI G+N G++GFL E E LS +E +
Sbjct: 57 DVDFIIAIGGDGTILRIEHKTKK-DIPILGINMGTLGFL-TEVEPEETFFALSRLLEGDY 114
Query: 96 H---PLKMTVFDYDNSICAENI-LAINEVSII-RKPGQNQLVQAAKLEVKVDDQVRLPEL 150
+K+ V+ I EN+ A+NEV I+ PG+ L+ VD ++ E+
Sbjct: 115 FIDERIKLRVY-----INGENVPDALNEVVILTGIPGK-----IIHLKYYVDGEL-ADEV 163
Query: 151 VCDGLVVSTPIGSTAYNFSALGPILPLESRHLLLTPVSPFKPRRWHGAILPNDVMIEIQV 210
DGL++STP GSTAY SA GP + +L+ P+ PF ++P+ I++++
Sbjct: 164 RADGLIISTPTGSTAYAMSAGGPFVDPRLDAILIAPLCPF-KLSSRPMVVPSSSRIDVKL 222
Query: 211 LEHKQRPVIATAD 223
L R +I D
Sbjct: 223 LR-TGREIILVID 234
>gnl|CDD|184489 PRK14075, pnk, inorganic polyphosphate/ATP-NAD kinase; Provisional.
Length = 256
Score = 82.5 bits (204), Expect = 1e-16
Identities = 66/256 (25%), Positives = 123/256 (48%), Gaps = 43/256 (16%)
Query: 8 IHFKASNAKKAQEAYDK-----FVKIYGNSTSE---EADVIVVLGGDGFMLQSFHQSKEY 59
I ++ K+A+ +K V + +++ AD+I+V+GGDG +L++ +K+
Sbjct: 5 IFYREEKEKEAKFLKEKISKEHEVVEFCEASASGKVTADLIIVVGGDGTVLKA---AKKV 61
Query: 60 DKPIYGMNCGSVGFL----MNEYCIENLVERLS----VAVECTFHPLKMTVFDYDNSICA 111
P+ G G +GFL + E I+ +E L + F ++ + ++
Sbjct: 62 GTPLVGFKAGRLGFLSSYTLEE--IDRFLEDLKNWNFREEKRWFLKIESELGNHL----- 114
Query: 112 ENILAINEVSIIRKPGQNQLVQAAKLEVKVDDQVRLPELVCDGLVVSTPIGSTAYNFSAL 171
A+N+V++ R P Q + ++EV +D + DG+V+STP GSTAY+ S
Sbjct: 115 ----ALNDVTLERDPSQKMV----EIEVSFEDHSSM-WFFADGVVISTPTGSTAYSLSLG 165
Query: 172 GPILPLESRHLLLTPVSP-FKPRRWHGAILPNDVMIEIQVLEHKQRPVIATADRLAIEPV 230
GPI+ +TP++P F R ++P++ + ++ QR + D + +
Sbjct: 166 GPIILPNCEVFEITPIAPQFLATR--SIVIPSNEKVTVES----QRDINLIVDGVLVGKT 219
Query: 231 SRINVTQSSDITMRIL 246
+RI V +S +RIL
Sbjct: 220 NRITVKKSRR-YVRIL 234
>gnl|CDD|179573 PRK03372, ppnK, inorganic polyphosphate/ATP-NAD kinase;
Provisional.
Length = 306
Score = 81.1 bits (201), Expect = 3e-16
Identities = 66/251 (26%), Positives = 118/251 (47%), Gaps = 48/251 (19%)
Query: 34 SEEADVIVVLGGDGFMLQSFHQSKEYDKPIYGMNCGSVGFL-------MNE--------- 77
++ ++++VLGGDG +L++ ++ D P+ G+N G VGFL ++E
Sbjct: 70 ADGCELVLVLGGDGTILRAAELARAADVPVLGVNLGHVGFLAEAEAEDLDEAVERVVDRD 129
Query: 78 YCIENLVERLSVAVECTFHPLKMTVFDYDNSICAENILAINEVSIIRKPGQNQLVQAAKL 137
Y +E ER+++ V TV + A+NE S+ + + L L
Sbjct: 130 YRVE---ERMTLDV---------TVRVGGEIV--WRGWALNEASLEKADREGML--EVVL 173
Query: 138 EVKVDDQVRLPELVCDGLVVSTPIGSTAYNFSALGPILPLESRHLLLTPVSP---F-KPR 193
EV D + CDG++VSTP GSTAY FSA GP++ + LL+ P++ F +P
Sbjct: 174 EV---DGRPVSSFGCDGVLVSTPTGSTAYAFSAGGPVVWPDLEALLVVPLNAHALFARP- 229
Query: 194 RWHGAILPNDVMIEIQVLEHKQRPVIATADR--LAIEPVSRINVTQSSDITMRILSDSHR 251
++ + +++L V+ R + + P +R+ V + + +R+
Sbjct: 230 ----LVVSPTSTVAVEILADTSDAVLWCDGRRSVDLPPGARVEVRRGAT-PVRLARLDSA 284
Query: 252 SWSDRILTAQF 262
++DR L +F
Sbjct: 285 PFTDR-LVRKF 294
>gnl|CDD|167337 PRK02231, ppnK, inorganic polyphosphate/ATP-NAD kinase;
Provisional.
Length = 272
Score = 79.8 bits (197), Expect = 7e-16
Identities = 70/223 (31%), Positives = 106/223 (47%), Gaps = 27/223 (12%)
Query: 37 ADVIVVLGGDGFMLQSFHQSKEYDKPIYGMNCGSVGFLM-----NEYC-IENLVERLSVA 90
A + +V+GGDG ML +YD P+ G+N G++GFL N Y +E +ER
Sbjct: 43 AQLAIVIGGDGNMLGRARVLAKYDIPLIGINRGNLGFLTDIDPKNAYEQLEACLERGEFF 102
Query: 91 VECTFHPLKMTVFDYDNSICAENILAINEVSIIRKPGQNQLVQAAKLEVKVDDQVRLPEL 150
VE F L+ + I N A+NEV I P + + V +DD+ +
Sbjct: 103 VEERFL-LEAKIERNGKIIATSN--ALNEVVI--HPAK--IAHMIDFHVYIDDKFAFSQR 155
Query: 151 VCDGLVVSTPIGSTAYNFSALGPILPLESRHLLLTPVSPF----KPRRWHGAILPNDVMI 206
DGL++STP GSTAY+ SA GPIL + L P+ P +P ++ D I
Sbjct: 156 -SDGLIISTPTGSTAYSLSAGGPILTPNLNAIALVPMFPHTLSSRP-----LVIDGDSKI 209
Query: 207 EIQVLEHKQRPVIATADR---LAIEPVSRINVTQSSDITMRIL 246
++ E+ + + D L P R++V +S D +R+L
Sbjct: 210 SLRFAEYNTPQLEVSCDSQIALPFTPDDRVHVQKSPDK-LRLL 251
>gnl|CDD|179862 PRK04539, ppnK, inorganic polyphosphate/ATP-NAD kinase;
Provisional.
Length = 296
Score = 77.6 bits (191), Expect = 3e-15
Identities = 46/158 (29%), Positives = 78/158 (49%), Gaps = 13/158 (8%)
Query: 37 ADVIVVLGGDGFMLQSFHQSKEYDKPIYGMNCGSVGFLMNEYCIENLVERLSVAVECTFH 96
D++ VLGGDG L + PI G+N G +GF + + E + ++L +E +
Sbjct: 69 CDLVAVLGGDGTFLSVAREIAPRAVPIIGINQGHLGF-LTQIPREYMTDKLLPVLEGKYL 127
Query: 97 P-----LKMTVFDYDNSICAENILAINEVSIIRKPGQNQLVQAAKLEVKVDDQVRLPELV 151
++ + + E LA+N+ ++ + G Q+++ EV V+ + +
Sbjct: 128 AEERILIEAALIREGKTA--ERALALNDA-VLSRGGAGQMIE---FEVFVNREFVYTQR- 180
Query: 152 CDGLVVSTPIGSTAYNFSALGPILPLESRHLLLTPVSP 189
DGL+VSTP GSTAY+ +A GPI+ L P+ P
Sbjct: 181 SDGLIVSTPTGSTAYSLAAGGPIMQAGLHAFTLVPICP 218
>gnl|CDD|184490 PRK14076, pnk, inorganic polyphosphate/ATP-NAD kinase; Provisional.
Length = 569
Score = 76.7 bits (189), Expect = 6e-15
Identities = 52/158 (32%), Positives = 84/158 (53%), Gaps = 15/158 (9%)
Query: 40 IVVLGGDGFMLQSFHQSKEYDKPIYGMNCGSVGFLMNEYCIENLVERLSVAVECTFHPLK 99
I+ +GGDG +L++ + PI +N G+VGFL E+ E + + + + + K
Sbjct: 352 IISIGGDGTVLRASKLVNGEEIPIICINMGTVGFL-TEFSKEEIFKAIDSIISGEYEIEK 410
Query: 100 MT-VFDYDNSICAENIL--AINEVSIIRKPGQNQLVQAAKL---EVKVDDQVRLPELVCD 153
T + + +NIL A+NEV I K AK+ EV V+ ++ + E+ D
Sbjct: 411 RTKLSGFILKDGHQNILPSALNEVVITTK-------NPAKMLHFEVYVNGEL-VEEVRAD 462
Query: 154 GLVVSTPIGSTAYNFSALGPILPLESRHLLLTPVSPFK 191
G+++STP GSTAY+ SA GPI+ ++ P+ PFK
Sbjct: 463 GIIISTPTGSTAYSLSAGGPIVEPTVDGFIIVPICPFK 500
>gnl|CDD|179241 PRK01185, ppnK, inorganic polyphosphate/ATP-NAD kinase;
Provisional.
Length = 271
Score = 74.8 bits (184), Expect = 2e-14
Identities = 51/194 (26%), Positives = 98/194 (50%), Gaps = 24/194 (12%)
Query: 24 KFVKIYGNSTSE-EADVIVVLGGDGFMLQSFHQSKEYDKPIYGMNCGSVGFLMNEYCIEN 82
K + + G E ADVI+ +GGDG +L++ ++K PI G+N G +GFL E I+
Sbjct: 39 KALGMDGLDIEEINADVIITIGGDGTILRTLQRAK---GPILGINMGGLGFL-TEIEIDE 94
Query: 83 L---VERLSVAVECTFHPLKMTVF---DYDNSICAENILAINEVSIIRKPGQNQLVQAAK 136
+ +++L +K+ V+ + E ++ + ++ IR+
Sbjct: 95 VGSAIKKLIRGEYFIDERMKLKVYINGERLEDCTNEAVIHTDRIAKIRQ----------- 143
Query: 137 LEVKVDDQVRLPELVCDGLVVSTPIGSTAYNFSALGPILPLESRHLLLTPVSPFKPRRWH 196
++ D L DG++V+TP GST+Y+ SA GPIL ++++ ++P+ R
Sbjct: 144 FKIYYDGHF-LDTFKADGVIVATPTGSTSYSSSAGGPILLPNLEGMVISYIAPYS-SRPK 201
Query: 197 GAILPNDVMIEIQV 210
++P++ +EI++
Sbjct: 202 SVVVPSESTVEIKI 215
>gnl|CDD|179257 PRK01231, ppnK, inorganic polyphosphate/ATP-NAD kinase;
Provisional.
Length = 295
Score = 74.6 bits (184), Expect = 3e-14
Identities = 49/150 (32%), Positives = 74/150 (49%), Gaps = 21/150 (14%)
Query: 35 EEADVIVVLGGDGFMLQSFHQSKEYDKPIYGMNCGSVGFLMN---EYCIENLVERLS--V 89
E D+++V+GGDG +L + ++ P+ G+N G +GFL + + L E L
Sbjct: 61 EVCDLVIVVGGDGSLLGAARALARHNVPVLGINRGRLGFLTDIRPDELEFKLAEVLDGHY 120
Query: 90 AVECTFHPLKMTVFDYDNSICAENILAINEVSIIRKPGQNQLVQAAKLEVKVDDQVRLPE 149
E F L+ V I + A+N+V + PG+ + + E+ +D Q
Sbjct: 121 QEEERFL-LEAEVRRGGEVI-GQGD-ALNDVVL--HPGK--STRMIEFELYIDGQ----- 168
Query: 150 LVC----DGLVVSTPIGSTAYNFSALGPIL 175
VC DGL+VSTP GSTAY S GPI+
Sbjct: 169 FVCSQRSDGLIVSTPTGSTAYALSGGGPIM 198
>gnl|CDD|179379 PRK02155, ppnK, NAD(+)/NADH kinase family protein; Provisional.
Length = 291
Score = 74.2 bits (183), Expect = 3e-14
Identities = 69/225 (30%), Positives = 106/225 (47%), Gaps = 32/225 (14%)
Query: 36 EADVIVVLGGDGFMLQSFHQSKEYDKPIYGMNCGSVGFLMNEYCIENLVERLSVAVECTF 95
AD+ VVLGGDG ML Q Y P+ G+N G +GF + + ++++ E L + +
Sbjct: 63 RADLAVVLGGDGTMLGIGRQLAPYGVPLIGINHGRLGF-ITDIPLDDMQETLPPMLAGNY 121
Query: 96 ---HPLKMTVFDYDNSICAENILAINEVSIIRKPGQNQLVQAAKLEVKVDDQVRLPELVC 152
+ + + + LA N+V + R G + +V+ L V VD +
Sbjct: 122 EEEERMLLEARVVRDGEPIFHALAFNDVVVNRS-GFSGMVE---LRVSVDG-----RFMY 172
Query: 153 ----DGLVVSTPIGSTAYNFSALGPILPLESRHLLLTPVSPF----KPRRWHGAILPNDV 204
DGL+V+TP GSTAY SA GPIL + +L P++P +P +LP+D
Sbjct: 173 NQRSDGLIVATPTGSTAYALSAGGPILHPQLPGWVLVPIAPHTLSNRP-----IVLPDDS 227
Query: 205 MIEIQVLEHKQRPVIATADR---LAIEPVSRINVTQSSDITMRIL 246
+ IQ+ R V D ++E RI V +S T+R L
Sbjct: 228 EVAIQI--VGGRDVSVNFDMQSLTSLELGDRIEVRRSPH-TVRFL 269
>gnl|CDD|179455 PRK02645, ppnK, inorganic polyphosphate/ATP-NAD kinase;
Provisional.
Length = 305
Score = 73.8 bits (182), Expect = 4e-14
Identities = 55/158 (34%), Positives = 83/158 (52%), Gaps = 22/158 (13%)
Query: 32 STSEEADVIVVLGGDGFMLQSFHQSKEYDKPIYGMNCG-SVGFLMNEYCI---ENLVERL 87
S SE D+ +VLGGDG +L + +D PI +N G +GFL + + E++ +RL
Sbjct: 53 SASELIDLAIVLGGDGTVLAAARHLAPHDIPILSVNVGGHLGFLTHPRDLLQDESVWDRL 112
Query: 88 S---VAVECTFHPLKM----TVFDYDNSIC---AENILAINEVSIIRKPGQNQLVQAAKL 137
A+E +M VF+ D S +E+ A+N+ + KP L
Sbjct: 113 QEDRYAIE-----RRMMLQARVFEGDRSNEEPVSESYYALNDFYL--KPASEDRSPTCIL 165
Query: 138 EVKVDDQVRLPELVCDGLVVSTPIGSTAYNFSALGPIL 175
E+++D +V + + DGL+VSTP GSTAY +A GPIL
Sbjct: 166 ELEIDGEV-VDQYQGDGLIVSTPTGSTAYTMAAGGPIL 202
>gnl|CDD|179352 PRK01911, ppnK, inorganic polyphosphate/ATP-NAD kinase;
Provisional.
Length = 292
Score = 73.4 bits (181), Expect = 6e-14
Identities = 48/191 (25%), Positives = 86/191 (45%), Gaps = 38/191 (19%)
Query: 15 AKKAQEAYDKFVKIYGNSTSEEADVIVVLGGDGFMLQSFHQSKEYDKPIYGMNCGSVGFL 74
K +YD F AD+++ +GGDG L++ + PI G+N G +GFL
Sbjct: 45 DLKFHPSYDTFSD--NEELDGSADMVISIGGDGTFLRTATYVGNSNIPILGINTGRLGFL 102
Query: 75 M----------------NEYCIENLVERLSVAVECTFHPLKMTVFDYDNSICAENILAIN 118
+Y IE ER + +E + + E A+N
Sbjct: 103 ATVSKEEIEETIDELLNGDYTIE---ERSLLQLES------------NPKLFGELNFALN 147
Query: 119 EVSIIRKPGQNQLVQAAKLEVKVDDQVRLPELVCDGLVVSTPIGSTAYNFSALGPILPLE 178
E++I+++ + + + ++ + L DGL+V+TP GST Y+ S GPI+ +
Sbjct: 148 EIAILKRDTSSMI----TVHTYLNGEY-LNSYWADGLIVATPTGSTGYSLSCGGPIIVPD 202
Query: 179 SRHLLLTPVSP 189
++ ++TP++P
Sbjct: 203 AKSFVITPIAP 213
>gnl|CDD|179574 PRK03378, ppnK, inorganic polyphosphate/ATP-NAD kinase;
Provisional.
Length = 292
Score = 71.9 bits (177), Expect = 2e-13
Identities = 54/162 (33%), Positives = 86/162 (53%), Gaps = 17/162 (10%)
Query: 35 EEADVIVVLGGDGFMLQSFHQSKEYDKPIYGMNCGSVGFL--MNEYCIENLVERLSVAVE 92
++AD+ +V+GGDG ML + YD + G+N G++GFL ++ +N +++LS +E
Sbjct: 62 QQADLAIVVGGDGNMLGAARVLARYDIKVIGINRGNLGFLTDLDP---DNALQQLSDVLE 118
Query: 93 CTFHPLKMTVFDYDNSICAENIL-----AINEVSIIRKPGQNQLVQAAKLEVKVDDQVRL 147
+ + F + +C AINEV + PG+ + + EV +DD
Sbjct: 119 GHY--ISEKRFLLEAQVCRHGQQKRISTAINEV--VLHPGK--VAHMIEFEVYIDDNFAF 172
Query: 148 PELVCDGLVVSTPIGSTAYNFSALGPILPLESRHLLLTPVSP 189
+ DGL++STP GSTAY+ SA GPIL + L P+ P
Sbjct: 173 SQR-SDGLIISTPTGSTAYSLSAGGPILTPSLDAITLVPMFP 213
>gnl|CDD|172567 PRK14077, pnk, inorganic polyphosphate/ATP-NAD kinase; Provisional.
Length = 287
Score = 69.0 bits (169), Expect = 1e-12
Identities = 51/159 (32%), Positives = 82/159 (51%), Gaps = 17/159 (10%)
Query: 36 EADVIVVLGGDGFMLQSFHQSKEYDKPIYGMNCGSVGFL----MNEYCIENLVE---RLS 88
+D ++ LGGDG ++ ++ EYDK + G++ G +GFL ++E E + +
Sbjct: 64 ISDFLISLGGDGTLISLCRKAAEYDKFVLGIHAGHLGFLTDITVDEA--EKFFQAFFQGE 121
Query: 89 VAVECTFHPLKMTVFDYDNSICAENILAINEVSIIRKPGQNQLVQAAKLEVKVDDQVRLP 148
+E P ++VF LA N+V I + N A +E ++++
Sbjct: 122 FEIE---KPYMLSVFLEKKQGKILEKLAFNDVVISK----NNQASMAHIEAFLNEK-YFN 173
Query: 149 ELVCDGLVVSTPIGSTAYNFSALGPILPLESRHLLLTPV 187
E DG++V+TP GSTAYN SA GPI+ S+ +LTPV
Sbjct: 174 EYFGDGVIVATPAGSTAYNMSANGPIIYPLSQVFILTPV 212
>gnl|CDD|179456 PRK02649, ppnK, inorganic polyphosphate/ATP-NAD kinase;
Provisional.
Length = 305
Score = 68.1 bits (167), Expect = 2e-12
Identities = 45/152 (29%), Positives = 75/152 (49%), Gaps = 9/152 (5%)
Query: 41 VVLGGDGFMLQSFHQSKEYDKPIYGMNCGSVGFLMNEYCIENLVERLSVAVECTFHPLK- 99
+VLGGDG +L + Q P+ +N G +GFL Y + L E + + + +
Sbjct: 73 IVLGGDGTVLSAARQLAPCGIPLLTINTGHLGFLTEAY-LNQLDEAIDQVLAGQYTIEER 131
Query: 100 --MTVFDYDNSICAENILAINEVSIIRKPGQNQLVQAAKLEVKVDDQVRLPELVCDGLVV 157
+TV L++NE+ + R+P L E+ + + ++ DG+++
Sbjct: 132 TMLTVSVMRGDQLRWEALSLNEMVLHREP----LTSMCHFEIAIGRHAPV-DIAADGVIL 186
Query: 158 STPIGSTAYNFSALGPILPLESRHLLLTPVSP 189
STP GSTAY+ SA GP++ + L LTP+ P
Sbjct: 187 STPTGSTAYSLSAGGPVITPDVPVLQLTPICP 218
>gnl|CDD|178523 PLN02935, PLN02935, Bifunctional NADH kinase/NAD(+) kinase.
Length = 508
Score = 62.2 bits (151), Expect = 1e-10
Identities = 54/191 (28%), Positives = 89/191 (46%), Gaps = 35/191 (18%)
Query: 38 DVIVVLGGDGFMLQSFHQSKEYDKPIYGMNCGSVGFL------MNEYCIENLVE-----R 86
D+++ LGGDG +L + K P+ + GS+GF+ C++ +++
Sbjct: 264 DLVITLGGDGTVLWAASMFKGPVPPVVPFSMGSLGFMTPFHSEQYRDCLDAILKGPISIT 323
Query: 87 LSVAVECTFHPLKMTVFDYDNSICAENILAINEVSIIRKPGQNQLVQAAKLEVKVDDQVR 146
L ++C H ++ + + E IL +NEV+I R LE D+
Sbjct: 324 LRHRLQC--HIIRDAAKNEYET--EEPILVLNEVTIDRGISSF----LTNLECYCDNSF- 374
Query: 147 LPELVC---DGLVVSTPIGSTAYNFSALGPILPLESRHLLLTPVSP----FKPRRWHGAI 199
+ C DGL++ST GSTAY+ +A G ++ + +L TP+ P F+P I
Sbjct: 375 ---VTCVQGDGLILSTTSGSTAYSLAAGGSMVHPQVPGILFTPICPHSLSFRP-----LI 426
Query: 200 LPNDVMIEIQV 210
LP V I +QV
Sbjct: 427 LPEYVTIRVQV 437
>gnl|CDD|179889 PRK04885, ppnK, inorganic polyphosphate/ATP-NAD kinase;
Provisional.
Length = 265
Score = 57.1 bits (139), Expect = 4e-09
Identities = 47/156 (30%), Positives = 78/156 (50%), Gaps = 29/156 (18%)
Query: 33 TSEEADVIVVLGGDGFMLQSFHQ-SKEYDKPIY-GMNCGSVGFLMN--EYCIENLVERLS 88
+ D+++ +GGDG +L +FH+ + DK + G++ G +GF + + ++ LV L+
Sbjct: 32 DEKNPDIVISVGGDGTLLSAFHRYENQLDKVRFVGVHTGHLGFYTDWRPFEVDKLVIALA 91
Query: 89 V----AVECTFHP-LKMTVFDYDNSICAENILAINEVSIIRKPGQNQLVQAAKLEVKVDD 143
V +P L++ + D E LA+NE + I++ LV +V ++
Sbjct: 92 KDPGQVVS---YPLLEVKITYEDGEK--EKYLALNE-ATIKRIE-GTLV----ADVYING 140
Query: 144 QV----RLPELVCDGLVVSTPIGSTAYNFSALGPIL 175
+ R DGL VSTP GSTAYN S G +L
Sbjct: 141 VLFERFR-----GDGLCVSTPTGSTAYNKSLGGAVL 171
>gnl|CDD|179584 PRK03501, ppnK, inorganic polyphosphate/ATP-NAD kinase;
Provisional.
Length = 264
Score = 55.4 bits (134), Expect = 1e-08
Identities = 43/155 (27%), Positives = 76/155 (49%), Gaps = 28/155 (18%)
Query: 35 EEADVIVVLGGDGFMLQSFHQSKEYDKPIY-GMN-CGSVGFLMNEYC------IENLVER 86
+ A++IV +GGDG LQ+ ++ + +Y G++ +GF YC ++ +++
Sbjct: 38 KNANIIVSIGGDGTFLQAVRKTGFREDCLYAGISTKDQLGF----YCDFHIDDLDKMIQA 93
Query: 87 LSV-AVECTFHPLKMTVFDYDNSICAENILAINEVSIIRKPGQNQLVQAAKLEVKVDDQV 145
++ +E +P D S +NE SI ++ +++ ++V +DD
Sbjct: 94 ITKEEIEVRKYPTIEVTVDGSTSF-----YCLNEFSI-----RSSIIKTFVIDVYIDDL- 142
Query: 146 RLPELVCDGLVVSTPIGSTAYNFSALG----PILP 176
DG+VVSTP GSTAYN S G P++P
Sbjct: 143 HFETFRGDGMVVSTPTGSTAYNKSVRGAVVDPLIP 177
>gnl|CDD|178328 PLN02727, PLN02727, NAD kinase.
Length = 986
Score = 54.5 bits (131), Expect = 3e-08
Identities = 58/217 (26%), Positives = 104/217 (47%), Gaps = 37/217 (17%)
Query: 20 EAYDKFVKI---------YGNSTS---EEADVIVVLGGDGFMLQSFHQSKEYDKPIYGMN 67
+ +D F +I Y TS E D + LGGDG +L + + + P+ N
Sbjct: 715 DVHDIFARIPGFGFVQTFYSQDTSDLHERVDFVACLGGDGVILHASNLFRGAVPPVVSFN 774
Query: 68 CGSVGFLMNEYCIENLVERLSVAV------ECTFHPLKM----TVFDYDNSICAENILAI 117
GS+GFL + Y E+ + L + + + L+M +F ++ + +
Sbjct: 775 LGSLGFLTSHY-FEDFRQDLRQVIHGNNTLDGVYITLRMRLRCEIFRNGKAMPGKVFDVL 833
Query: 118 NEVSIIRKPGQNQLVQAAKLEVKVDDQVRLPELVCDGLVVSTPIGSTAYNFSALGPILPL 177
NEV + R G N + +K+E D++ + ++ DG++V+TP GSTAY+ +A G ++
Sbjct: 834 NEVVVDR--GSNPYL--SKIECYEHDRL-ITKVQGDGVIVATPTGSTAYSTAAGGSMVHP 888
Query: 178 ESRHLLLTPVSP----FKPRRWHGAILPNDVMIEIQV 210
+L TP+ P F+P ILP+ +E+++
Sbjct: 889 NVPCMLFTPICPHSLSFRP-----VILPDSARLELKI 920
>gnl|CDD|100598 PRK00561, ppnK, inorganic polyphosphate/ATP-NAD kinase;
Provisional.
Length = 259
Score = 43.3 bits (102), Expect = 6e-05
Identities = 55/228 (24%), Positives = 91/228 (39%), Gaps = 43/228 (18%)
Query: 12 ASNAKKAQEAYDKFVKIYGNSTSEE--ADVIVVLGGDGFMLQSFHQSKEYDKPIYGMNCG 69
AS + + K K+ + E AD + VLGGDGF + + + G+N G
Sbjct: 7 ASTTPQTEPVLPKLKKVLKKKLAVEDGADYLFVLGGDGFFVSTAANYNCAGCKVVGINTG 66
Query: 70 SVGFL--MNEYCI-ENLVERLSVAVECTFHPLKMTVFDYDNSICAENILAINEVSIIRKP 126
+GF NE + +N +L + F + + D+ I L +NE+++
Sbjct: 67 HLGFYTSFNETDLDQNFANKLD---QLKFTQIDLLEVQIDDQI----HLVLNELAVYTN- 118
Query: 127 GQNQLVQAAKLEVKVDDQVRLPELVCDGLVVSTPIGSTAYNFSALGPIL-P-------LE 178
A + + +D++ + GL++ GSTA SA G ++ P +E
Sbjct: 119 ------TAYPINIFIDNEF-WEKYRGSGLLIGPRTGSTALAKSAKGAVIFPRIDVIQIIE 171
Query: 179 SRHLL----LTPVSPFKPRRWHGAILPNDVMIEIQVLE---HKQRPVI 219
LL T SP ILP D +E ++ + H Q P
Sbjct: 172 LNPLLHPNQTTIQSPI--------ILPIDTKVEFEIKKAFDHDQFPRF 211
>gnl|CDD|178517 PLN02929, PLN02929, NADH kinase.
Length = 301
Score = 33.5 bits (77), Expect = 0.066
Identities = 24/57 (42%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
Query: 154 GLVVSTPIGSTAYNFSALGPILPLESRHL---LLTPVSP--FKPRRWHGAILPNDVM 205
GL VST GSTA SA G +PL SR L + P+SP HG P M
Sbjct: 198 GLRVSTAAGSTAAMLSAGGFPMPLLSRDLQYMVREPISPGHPPKSLMHGFYKPGQHM 254
Score = 27.7 bits (62), Expect = 3.3
Identities = 9/19 (47%), Positives = 15/19 (78%)
Query: 36 EADVIVVLGGDGFMLQSFH 54
+ D++V +GGDG +LQ+ H
Sbjct: 64 DVDLVVAVGGDGTLLQASH 82
>gnl|CDD|148611 pfam07103, DUF1365, Protein of unknown function (DUF1365). This
family consists of several bacterial and plant proteins
of around 250 residues in length. The function of this
family is unknown.
Length = 244
Score = 27.9 bits (63), Expect = 2.7
Identities = 9/39 (23%), Positives = 13/39 (33%), Gaps = 4/39 (10%)
Query: 187 VSPFKPR----RWHGAILPNDVMIEIQVLEHKQRPVIAT 221
VSPF P R+ + + + I AT
Sbjct: 152 VSPFMPMDGRYRFRFSPPGERLRVHIDNHREGGPVFDAT 190
>gnl|CDD|152173 pfam11737, DUF3300, Protein of unknown function (DUF3300). This
hypothetical bacterial gene product has a long
hydrophobic segment and is thus likely to be a membrane
protein.
Length = 230
Score = 28.0 bits (63), Expect = 2.8
Identities = 13/43 (30%), Positives = 16/43 (37%), Gaps = 11/43 (25%)
Query: 201 PNDVMIEIQVLEHK-----------QRPVIATADRLAIEPVSR 232
DVM IQ L K Q+ V D++ IEP
Sbjct: 96 EADVMDAIQRLRQKAQAAGNLKSTDQQKVTVEEDQIVIEPAQP 138
>gnl|CDD|179255 PRK01222, PRK01222, N-(5'-phosphoribosyl)anthranilate isomerase;
Provisional.
Length = 210
Score = 27.5 bits (62), Expect = 3.5
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 4/37 (10%)
Query: 25 FVKIYGNSTSEEADVIVVLGGD--GFMLQSFHQSKEY 59
VKI G +T E+A+ LG D GF+ + +S Y
Sbjct: 4 RVKICGITTPEDAEAAAELGADAIGFVF--YPKSPRY 38
>gnl|CDD|149924 pfam09018, Phage_Capsid_P3, P3 major capsid protein. The P3 major
capsid protein adopts a 'double-barrel' structure
comprising two eight-stranded viral beta-barrels or
jelly rolls, each of which contains a 12-residue
alpha-helix. This protein then trimerizes through a
'trimerisation loop' sequence, and is incorporated
within the viral capsid.
Length = 394
Score = 27.0 bits (59), Expect = 4.9
Identities = 10/17 (58%), Positives = 14/17 (82%)
Query: 60 DKPIYGMNCGSVGFLMN 76
DKPIY + G+VGF++N
Sbjct: 346 DKPIYTLQYGNVGFVVN 362
>gnl|CDD|132534 TIGR03495, phage_LysB, phage lysis regulatory protein, LysB family.
Members of this protein family are phage lysis
regulatory protein, including the well-studied protein
LysB (lysis protein B) of Enterobacteria phage P2. For
members of this family, genes are found in phage or in
prophage regions of bacterial genomes, typically near a
phage lysozyme or phage holin.
Length = 135
Score = 26.6 bits (59), Expect = 6.9
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 6/31 (19%)
Query: 193 RRWHGAILPNDVMIEIQVLEHKQRPVIATAD 223
RRW LP+DV I ++ QRP + A
Sbjct: 95 RRWADTPLPDDV-IRLR-----QRPALTGAA 119
>gnl|CDD|180036 PRK05355, PRK05355, 3-phosphoserine/phosphohydroxythreonine
aminotransferase; Provisional.
Length = 360
Score = 26.2 bits (59), Expect = 8.5
Identities = 10/17 (58%), Positives = 11/17 (64%), Gaps = 2/17 (11%)
Query: 163 STAYNFSALGP-ILPLE 178
YNFSA GP +LP E
Sbjct: 2 MRVYNFSA-GPAMLPEE 17
>gnl|CDD|179844 PRK04405, prsA, peptidylprolyl isomerase; Provisional.
Length = 298
Score = 26.3 bits (58), Expect = 8.7
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 6/54 (11%)
Query: 3 RNIQKIHFKASNAKKAQEAYDKFVKIYGNSTSEEADVIVVLGGDGFMLQSFHQS 56
R ++K + K + KK + Y+ + K YG+S VL +G SF Q+
Sbjct: 65 RALEKQYGKKVSTKKVDKQYNSYKKQYGSSFDS------VLSQNGMTTSSFKQN 112
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.320 0.135 0.392
Gapped
Lambda K H
0.267 0.0686 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 4,187,923
Number of extensions: 260965
Number of successful extensions: 590
Number of sequences better than 10.0: 1
Number of HSP's gapped: 568
Number of HSP's successfully gapped: 40
Length of query: 264
Length of database: 5,994,473
Length adjustment: 92
Effective length of query: 172
Effective length of database: 4,006,537
Effective search space: 689124364
Effective search space used: 689124364
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.4 bits)