RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780754|ref|YP_003065167.1| inorganic polyphosphate/ATP-NAD kinase [Candidatus Liberibacter asiaticus str. psy62] (264 letters) >2i2c_A Probable inorganic polyphosphate/ATP-NAD kinase 1; NADP bound of lmnadk1, transferase; HET: DTA PG4; 1.85A {Listeria monocytogenes egd-e} PDB: 2i1w_A* 2i2a_A* 2i2b_A* 2i29_A* 2i2d_A* 2i2e_A* 2i2f_A* 2q5f_A* (A:94-250) Length = 157 Score = 108 bits (272), Expect = 6e-25 Identities = 34/156 (21%), Positives = 57/156 (36%), Gaps = 12/156 (7%) Query: 98 LKMTVFDYDNSICAENILAINEVSIIRKPGQNQLVQAAKLEVKVDDQVRLPELVCDGLVV 157 LK TV A LA+NE ++ ++V ++D DGL + Sbjct: 10 LKTTVKYGIGKKEATY-LALNESTVKSSG------GPFVVDVVINDI-HFERFRGDGLCM 61 Query: 158 STPIGSTAYNFSALGPILPLESRHLLLTPVSPFKPRRWHGA----ILPNDVMIEIQVLEH 213 STP G+TAYN S G ++ + LT ++ R + + P ++ +Q + Sbjct: 62 STPSGTTAYNKSLGGALMHPSIEAMQLTEMASINNRVYRTIGSPLVFPKHHVVSLQPVND 121 Query: 214 KQRPVIATADRLAIEPVSRINVTQSSDITMRILSDS 249 K + + V I S+ S Sbjct: 122 KDFQISVDHLSILHRDVQEIRYEVSAKKIHFARFRS 157 >1yt5_A Inorganic polyphosphate/ATP-NAD kinase; domain 1: alpha/beta domain2: beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} (A:79-240) Length = 162 Score = 100 bits (251), Expect = 2e-22 Identities = 42/174 (24%), Positives = 73/174 (41%), Gaps = 13/174 (7%) Query: 77 EYCIENLVERLSVAVECTFHPLKMTVFDYDNSICAENILAINEVSIIRKPGQNQLVQAAK 136 Y ++ + L F N LA+N+V++ R + + Sbjct: 2 SYTLDEIDRFLEDLRNWNFREETRWFIQI--ESELGNHLALNDVTLERDL----SGKMVE 55 Query: 137 LEVKVDDQVRLPELVCDGLVVSTPIGSTAYNFSALGPILPLESRHLLLTPVSPFKPRRWH 196 +EV+V+ DG+V+STP GSTAY+ S GPI+ E L ++P++P Sbjct: 56 IEVEVEHH-SSMWFFADGVVISTPTGSTAYSLSIGGPIIFPECEVLEISPIAPQFF-LTR 113 Query: 197 GAILPNDVMIEIQVLEHKQRPVIATADRLAIEPVSRINVTQSSDITMRILSDSH 250 ++P++ + ++ QR + D + RI V + S +RIL Sbjct: 114 SVVIPSNFKVVVES----QRDINMLVDGVLTGKTKRIEVKK-SRRYVRILRPPE 162 >2an1_A Putative kinase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, transferase; 2.00A {Salmonella typhimurium LT2} (A:128-264) Length = 137 Score = 95.3 bits (237), Expect = 7e-21 Identities = 35/144 (24%), Positives = 58/144 (40%), Gaps = 12/144 (8%) Query: 98 LKMTVFDYDNSICAENILAINEVSIIRKPGQNQLVQAAKLEVKVDDQVRLPELVCDGLVV 157 L+ V D AINEV + + + EV +D+ DGL++ Sbjct: 2 LEAQVCQQDRQK--RISTAINEVVLHPGK----VAHMIEFEVYIDET-FAFSQRSDGLII 54 Query: 158 STPIGSTAYNFSALGPILPLESRHLLLTPVSPFKPRRWHGAILPNDVMIEIQVLEHKQRP 217 STP GSTAY+ SA GPIL + L P+ P ++ + I ++ + Sbjct: 55 STPTGSTAYSLSAGGPILTPSLDAITLVPMFPHT-LSARPLVINSSSTIRLRFSHRR-SD 112 Query: 218 VIATAD---RLAIEPVSRINVTQS 238 + + D L I+ + + + Sbjct: 113 LEISCDSQIALPIQEGEDVLIRRC 136 >1u0t_A Inorganic polyphosphate/ATP-NAD kinase; alpha-beta, beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Mycobacterium tuberculosis} (A:140-276) Length = 137 Score = 94.6 bits (235), Expect = 1e-20 Identities = 38/144 (26%), Positives = 63/144 (43%), Gaps = 12/144 (8%) Query: 98 LKMTVFDYDNSICAENILAINEVSIIRKPGQNQLVQAAKLEVKVDDQVRLPELVCDGLVV 157 L + V + A+NEVS+ + P + V++D + + CDG++V Sbjct: 2 LDVVVRQGGRIV--NRGWALNEVSLEKGPRL----GVLGVVVEIDGR-PVSAFGCDGVLV 54 Query: 158 STPIGSTAYNFSALGPILPLESRHLLLTPVSPFKPRRWHGAILPNDVMIEIQVLEHKQRP 217 STP GSTAY FSA GP+L + +L+ P + + + I I++ Sbjct: 55 STPTGSTAYAFSAGGPVLWPDLEAILVVPNNAHAL-FGRPMVTSPEATIAIEIEADG-HD 112 Query: 218 VIATAD---RLAIEPVSRINVTQS 238 + D + I SR+ VT+ Sbjct: 113 ALVFCDGRREMLIPAGSRLEVTRC 136 >1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} (A:131-255) Length = 125 Score = 83.3 bits (206), Expect = 3e-17 Identities = 32/129 (24%), Positives = 62/129 (48%), Gaps = 14/129 (10%) Query: 112 ENILAINEVSIIRKPGQNQLVQAAKLEVKVDDQVRLPELVCDGLVVSTPIGSTAYNFSAL 171 ++LA+NE++++ + + + ++VD + + CDG +V+T IGST Y FSA Sbjct: 8 PDVLALNEIAVLSRK----PAKMIDVALRVDGV-EVDRIRCDGFIVATQIGSTGYAFSAG 62 Query: 172 GPILPLESRHLLLTPVSPFKPRRWHGAILPNDVMIEIQVLEHKQRPVIATAD---RLAIE 228 GP++ +L P++PF+ W ++ + IE+ I AD + + Sbjct: 63 GPVVEPYLECFILIPIAPFR-FGWKPYVVSMERKIEVIA-----EKAIVVADGQKSVDFD 116 Query: 229 PVSRINVTQ 237 I ++ Sbjct: 117 GEITIEKSE 125 >1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} (A:1-130,A:256-265) Length = 140 Score = 79.6 bits (196), Expect = 4e-16 Identities = 24/108 (22%), Positives = 35/108 (32%), Gaps = 10/108 (9%) Query: 1 MDRNIQKIHFKASNAKKAQEAYDKFVKIYGNSTS--------EEADVIVVLGGDGFMLQS 52 + + + ++ E D IV +GGDG +L+ Sbjct: 25 GGGGGMRAAVVYKTDGHVKRIEEALKRLEVEVELFNQPSEELENFDFIVSVGGDGTILRI 84 Query: 53 FHQSKEYDKPIYGMNCGSVGFLMNEYCIENLVERLSVAVECTFHPLKM 100 + K PI+G+N G VG L EN L AVE Sbjct: 85 LQKLK-RCPPIFGINTGRVGLLT-HASPENFEVELKKAVEKFEVERFP 130 >2i2c_A Probable inorganic polyphosphate/ATP-NAD kinase 1; NADP bound of lmnadk1, transferase; HET: DTA PG4; 1.85A {Listeria monocytogenes egd-e} PDB: 2i1w_A* 2i2a_A* 2i2b_A* 2i29_A* 2i2d_A* 2i2e_A* 2i2f_A* 2q5f_A* (A:1-93) Length = 93 Score = 74.0 bits (182), Expect = 2e-14 Identities = 15/92 (16%), Positives = 38/92 (41%), Gaps = 7/92 (7%) Query: 7 KIHFKASNAKKAQEAYDKFVKIYGN----STSEEADVIVVLGGDGFMLQSFH--QSKEYD 60 K + +K+ + +G E ++++ +GGDG L +FH + + + Sbjct: 2 KYMITSKGDEKSDLLRLNMIAGFGEYDMEYDDVEPEIVISIGGDGTFLSAFHQYEERLDE 61 Query: 61 KPIYGMNCGSVGFLMNEYCIENLVERLSVAVE 92 G++ G +GF ++ + + + + Sbjct: 62 IAFIGIHTGHLGFYA-DWRPAEADKLVKLLAK 92 >1u0t_A Inorganic polyphosphate/ATP-NAD kinase; alpha-beta, beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Mycobacterium tuberculosis} (A:1-139,A:277-286) Length = 149 Score = 73.2 bits (179), Expect = 3e-14 Identities = 20/96 (20%), Positives = 40/96 (41%), Gaps = 2/96 (2%) Query: 7 KIHFKASNAKKAQEAYDKFVKIYGNSTSEEADVIVVLGGDGFMLQSFHQSKEYDKPIYGM 66 + + + V ++ ++++VLGGDG L++ ++ P+ G+ Sbjct: 46 RGSLHLAPDDMRAMGVEIEVVDADQHAADGCELVLVLGGDGTFLRAAELARNASIPVLGV 105 Query: 67 NCGSVGFLMNEYCIENLVERLSVAVECTFHP-LKMT 101 N G +GFL E E + L V + ++T Sbjct: 106 NLGRIGFLA-EAEAEAIDAVLEHVVAQDYRVEDRLT 140 >1yt5_A Inorganic polyphosphate/ATP-NAD kinase; domain 1: alpha/beta domain2: beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} (A:1-78) Length = 78 Score = 63.2 bits (154), Expect = 3e-11 Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 6/69 (8%) Query: 11 KASNAKKAQEA-----YDKFVKIYGNSTSEEADVIVVLGGDGFMLQSFHQSKEYDKPIYG 65 + + +E AD+IVV+GGDG +L++ ++ P+ G Sbjct: 11 REKEGEFLKEKISKEHEVIEFGEANAPGRVTADLIVVVGGDGTVLKAAKKA-ADGTPMVG 69 Query: 66 MNCGSVGFL 74 G +GFL Sbjct: 70 FKAGRLGFL 78 >2an1_A Putative kinase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, transferase; 2.00A {Salmonella typhimurium LT2} (A:1-127,A:265-275) Length = 138 Score = 55.0 bits (132), Expect = 9e-09 Identities = 23/91 (25%), Positives = 40/91 (43%), Gaps = 1/91 (1%) Query: 6 QKIHFKASNAKKAQEAYDKFVKIYGNSTSEEADVIVVLGGDGFMLQSFHQSKEYDKPIYG 65 Q + ++AD+ VV+GGDG ML + YD + G Sbjct: 33 QGYEVIVEQQIAHELQLKNVPTGTLAEIGQQADLAVVVGGDGNMLGAARTLARYDINVIG 92 Query: 66 MNCGSVGFLMNEYCIENLVERLSVAVECTFH 96 +N G++GFL + +N +++LS +E + Sbjct: 93 INRGNLGFLTDLD-PDNALQQLSDVLEGRYI 122 >3hot_A Transposable element mariner, complete CDS; protein-DNA complex, synaptic complex, transposase, DNA binding protein/DNA complex, transferase; HET: 5IU; 3.25A {Drosophila mauritiana} PDB: 3hos_A* (A:1-65) Length = 65 Score = 29.7 bits (67), Expect = 0.37 Identities = 6/32 (18%), Positives = 11/32 (34%) Query: 8 IHFKASNAKKAQEAYDKFVKIYGNSTSEEADV 39 + F K A E++ V+ +G Sbjct: 15 LIFCFHLKKTAAESHRMLVEAFGEQVPTVKTC 46 >1hx6_A Protein P3, major capsid protein; bacteriophage PRD1, coat protein, jelly roll, viral beta barrel, viral protein; 1.65A {Enterobacteria phage PRD1} (A:) Length = 394 Score = 27.0 bits (59), Expect = 2.5 Identities = 10/17 (58%), Positives = 14/17 (82%) Query: 60 DKPIYGMNCGSVGFLMN 76 DKPIY + G+VGF++N Sbjct: 346 DKPIYTLQYGNVGFVVN 362 >2qlv_A Carbon catabolite derepressing protein kinase; heterotrimer, ATP-binding, carbohydrate metabolism, kinase, membrane, nucleotide-binding, nucleus; 2.60A {Saccharomyces cerevisiae} (A:38-171) Length = 134 Score = 26.4 bits (58), Expect = 3.6 Identities = 11/26 (42%), Positives = 12/26 (46%), Gaps = 4/26 (15%) Query: 187 VSPFKPRRWHGAI----LPNDVMIEI 208 V+ RWH I P DVM EI Sbjct: 1 VTKKSKTRWHFGIRSRSYPLDVMGEI 26 >3l6w_A Hemocyanin 1; cupredoxin domain, copper-binding protein, metal-binding, oxygen binding; 4.00A {Megathura crenulata} (A:292-491) Length = 200 Score = 26.2 bits (58), Expect = 4.1 Identities = 19/103 (18%), Positives = 38/103 (36%), Gaps = 23/103 (22%) Query: 25 FVKIYGNSTSEEADVIVVLGGDGFMLQSFHQSKEYDKPIYGMNCGSVGFLMNEYCIENLV 84 ++K +S E A V+LGG M ++ + +D I V Sbjct: 22 YIKSGTDSDDEYAGSFVILGGAKEMPWAYERLYRFD-------------------ITETV 62 Query: 85 ERLSVAVECTFHPLKMTVFDYDNSICAENILAINEVSIIRKPG 127 L++ + + + YD++ ++L I+R+P Sbjct: 63 HNLNLTDD-HVK-FRFDLKKYDHTELDASVLP--APIIVRRPN 101 >1nsc_A Neuraminidase; hydrolase(O-glycosyl); HET: NAG SIA; 1.70A {Influenza b virus} (A:31-190) Length = 160 Score = 25.5 bits (56), Expect = 6.6 Identities = 6/21 (28%), Positives = 13/21 (61%) Query: 244 RILSDSHRSWSDRILTAQFSS 264 +D++ S+++ IL Q S+ Sbjct: 102 EAYTDTYHSYANNILRTQESA 122 >1zyo_A Serine protease; beta-barrel, glutamyl endopeptidase, hydrolase; 2.40A {Sesbania mosaic virus} (A:) Length = 191 Score = 25.3 bits (54), Expect = 7.6 Identities = 10/61 (16%), Positives = 18/61 (29%) Query: 12 ASNAKKAQEAYDKFVKIYGNSTSEEADVIVVLGGDGFMLQSFHQSKEYDKPIYGMNCGSV 71 + KA + V I T+ + G+ +L + H +P G Sbjct: 5 FYSPVKAGDEPASLVAIKSGPTTIGFGCRTKIDGEDCLLTAHHVWCNSMRPTGLAKAGKQ 64 Query: 72 G 72 Sbjct: 65 V 65 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.320 0.135 0.392 Gapped Lambda K H 0.267 0.0670 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 1,935,604 Number of extensions: 84450 Number of successful extensions: 289 Number of sequences better than 10.0: 1 Number of HSP's gapped: 277 Number of HSP's successfully gapped: 20 Length of query: 264 Length of database: 4,956,049 Length adjustment: 87 Effective length of query: 177 Effective length of database: 2,015,014 Effective search space: 356657478 Effective search space used: 356657478 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 54 (24.7 bits)