RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254780754|ref|YP_003065167.1| inorganic
polyphosphate/ATP-NAD kinase [Candidatus Liberibacter asiaticus str.
psy62]
(264 letters)
>2i2c_A Probable inorganic polyphosphate/ATP-NAD kinase 1; NADP
bound of lmnadk1, transferase; HET: DTA PG4; 1.85A
{Listeria monocytogenes egd-e} PDB: 2i1w_A* 2i2a_A*
2i2b_A* 2i29_A* 2i2d_A* 2i2e_A* 2i2f_A* 2q5f_A*
(A:94-250)
Length = 157
Score = 108 bits (272), Expect = 6e-25
Identities = 34/156 (21%), Positives = 57/156 (36%), Gaps = 12/156 (7%)
Query: 98 LKMTVFDYDNSICAENILAINEVSIIRKPGQNQLVQAAKLEVKVDDQVRLPELVCDGLVV 157
LK TV A LA+NE ++ ++V ++D DGL +
Sbjct: 10 LKTTVKYGIGKKEATY-LALNESTVKSSG------GPFVVDVVINDI-HFERFRGDGLCM 61
Query: 158 STPIGSTAYNFSALGPILPLESRHLLLTPVSPFKPRRWHGA----ILPNDVMIEIQVLEH 213
STP G+TAYN S G ++ + LT ++ R + + P ++ +Q +
Sbjct: 62 STPSGTTAYNKSLGGALMHPSIEAMQLTEMASINNRVYRTIGSPLVFPKHHVVSLQPVND 121
Query: 214 KQRPVIATADRLAIEPVSRINVTQSSDITMRILSDS 249
K + + V I S+ S
Sbjct: 122 KDFQISVDHLSILHRDVQEIRYEVSAKKIHFARFRS 157
>1yt5_A Inorganic polyphosphate/ATP-NAD kinase; domain 1: alpha/beta
domain2: beta sandwich, structural genomics, PSI,
protein structure initiative; 2.30A {Thermotoga
maritima} (A:79-240)
Length = 162
Score = 100 bits (251), Expect = 2e-22
Identities = 42/174 (24%), Positives = 73/174 (41%), Gaps = 13/174 (7%)
Query: 77 EYCIENLVERLSVAVECTFHPLKMTVFDYDNSICAENILAINEVSIIRKPGQNQLVQAAK 136
Y ++ + L F N LA+N+V++ R + +
Sbjct: 2 SYTLDEIDRFLEDLRNWNFREETRWFIQI--ESELGNHLALNDVTLERDL----SGKMVE 55
Query: 137 LEVKVDDQVRLPELVCDGLVVSTPIGSTAYNFSALGPILPLESRHLLLTPVSPFKPRRWH 196
+EV+V+ DG+V+STP GSTAY+ S GPI+ E L ++P++P
Sbjct: 56 IEVEVEHH-SSMWFFADGVVISTPTGSTAYSLSIGGPIIFPECEVLEISPIAPQFF-LTR 113
Query: 197 GAILPNDVMIEIQVLEHKQRPVIATADRLAIEPVSRINVTQSSDITMRILSDSH 250
++P++ + ++ QR + D + RI V + S +RIL
Sbjct: 114 SVVIPSNFKVVVES----QRDINMLVDGVLTGKTKRIEVKK-SRRYVRILRPPE 162
>2an1_A Putative kinase; structural genomics, PSI, protein structure
initiative, midwest center for structural genomics,
MCSG, transferase; 2.00A {Salmonella typhimurium LT2}
(A:128-264)
Length = 137
Score = 95.3 bits (237), Expect = 7e-21
Identities = 35/144 (24%), Positives = 58/144 (40%), Gaps = 12/144 (8%)
Query: 98 LKMTVFDYDNSICAENILAINEVSIIRKPGQNQLVQAAKLEVKVDDQVRLPELVCDGLVV 157
L+ V D AINEV + + + EV +D+ DGL++
Sbjct: 2 LEAQVCQQDRQK--RISTAINEVVLHPGK----VAHMIEFEVYIDET-FAFSQRSDGLII 54
Query: 158 STPIGSTAYNFSALGPILPLESRHLLLTPVSPFKPRRWHGAILPNDVMIEIQVLEHKQRP 217
STP GSTAY+ SA GPIL + L P+ P ++ + I ++ +
Sbjct: 55 STPTGSTAYSLSAGGPILTPSLDAITLVPMFPHT-LSARPLVINSSSTIRLRFSHRR-SD 112
Query: 218 VIATAD---RLAIEPVSRINVTQS 238
+ + D L I+ + + +
Sbjct: 113 LEISCDSQIALPIQEGEDVLIRRC 136
>1u0t_A Inorganic polyphosphate/ATP-NAD kinase; alpha-beta, beta
sandwich, structural genomics, PSI, protein structure
initiative; 2.30A {Mycobacterium tuberculosis}
(A:140-276)
Length = 137
Score = 94.6 bits (235), Expect = 1e-20
Identities = 38/144 (26%), Positives = 63/144 (43%), Gaps = 12/144 (8%)
Query: 98 LKMTVFDYDNSICAENILAINEVSIIRKPGQNQLVQAAKLEVKVDDQVRLPELVCDGLVV 157
L + V + A+NEVS+ + P + V++D + + CDG++V
Sbjct: 2 LDVVVRQGGRIV--NRGWALNEVSLEKGPRL----GVLGVVVEIDGR-PVSAFGCDGVLV 54
Query: 158 STPIGSTAYNFSALGPILPLESRHLLLTPVSPFKPRRWHGAILPNDVMIEIQVLEHKQRP 217
STP GSTAY FSA GP+L + +L+ P + + + I I++
Sbjct: 55 STPTGSTAYAFSAGGPVLWPDLEAILVVPNNAHAL-FGRPMVTSPEATIAIEIEADG-HD 112
Query: 218 VIATAD---RLAIEPVSRINVTQS 238
+ D + I SR+ VT+
Sbjct: 113 ALVFCDGRREMLIPAGSRLEVTRC 136
>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase;
ATP-binding, structural genomics, NADP, PSI, protein
structure initiative; HET: ATP; 1.70A {Archaeoglobus
fulgidus} (A:131-255)
Length = 125
Score = 83.3 bits (206), Expect = 3e-17
Identities = 32/129 (24%), Positives = 62/129 (48%), Gaps = 14/129 (10%)
Query: 112 ENILAINEVSIIRKPGQNQLVQAAKLEVKVDDQVRLPELVCDGLVVSTPIGSTAYNFSAL 171
++LA+NE++++ + + + ++VD + + CDG +V+T IGST Y FSA
Sbjct: 8 PDVLALNEIAVLSRK----PAKMIDVALRVDGV-EVDRIRCDGFIVATQIGSTGYAFSAG 62
Query: 172 GPILPLESRHLLLTPVSPFKPRRWHGAILPNDVMIEIQVLEHKQRPVIATAD---RLAIE 228
GP++ +L P++PF+ W ++ + IE+ I AD + +
Sbjct: 63 GPVVEPYLECFILIPIAPFR-FGWKPYVVSMERKIEVIA-----EKAIVVADGQKSVDFD 116
Query: 229 PVSRINVTQ 237
I ++
Sbjct: 117 GEITIEKSE 125
>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase;
ATP-binding, structural genomics, NADP, PSI, protein
structure initiative; HET: ATP; 1.70A {Archaeoglobus
fulgidus} (A:1-130,A:256-265)
Length = 140
Score = 79.6 bits (196), Expect = 4e-16
Identities = 24/108 (22%), Positives = 35/108 (32%), Gaps = 10/108 (9%)
Query: 1 MDRNIQKIHFKASNAKKAQEAYDKFVKIYGNSTS--------EEADVIVVLGGDGFMLQS 52
+ + + ++ E D IV +GGDG +L+
Sbjct: 25 GGGGGMRAAVVYKTDGHVKRIEEALKRLEVEVELFNQPSEELENFDFIVSVGGDGTILRI 84
Query: 53 FHQSKEYDKPIYGMNCGSVGFLMNEYCIENLVERLSVAVECTFHPLKM 100
+ K PI+G+N G VG L EN L AVE
Sbjct: 85 LQKLK-RCPPIFGINTGRVGLLT-HASPENFEVELKKAVEKFEVERFP 130
>2i2c_A Probable inorganic polyphosphate/ATP-NAD kinase 1; NADP
bound of lmnadk1, transferase; HET: DTA PG4; 1.85A
{Listeria monocytogenes egd-e} PDB: 2i1w_A* 2i2a_A*
2i2b_A* 2i29_A* 2i2d_A* 2i2e_A* 2i2f_A* 2q5f_A*
(A:1-93)
Length = 93
Score = 74.0 bits (182), Expect = 2e-14
Identities = 15/92 (16%), Positives = 38/92 (41%), Gaps = 7/92 (7%)
Query: 7 KIHFKASNAKKAQEAYDKFVKIYGN----STSEEADVIVVLGGDGFMLQSFH--QSKEYD 60
K + +K+ + +G E ++++ +GGDG L +FH + + +
Sbjct: 2 KYMITSKGDEKSDLLRLNMIAGFGEYDMEYDDVEPEIVISIGGDGTFLSAFHQYEERLDE 61
Query: 61 KPIYGMNCGSVGFLMNEYCIENLVERLSVAVE 92
G++ G +GF ++ + + + +
Sbjct: 62 IAFIGIHTGHLGFYA-DWRPAEADKLVKLLAK 92
>1u0t_A Inorganic polyphosphate/ATP-NAD kinase; alpha-beta, beta
sandwich, structural genomics, PSI, protein structure
initiative; 2.30A {Mycobacterium tuberculosis}
(A:1-139,A:277-286)
Length = 149
Score = 73.2 bits (179), Expect = 3e-14
Identities = 20/96 (20%), Positives = 40/96 (41%), Gaps = 2/96 (2%)
Query: 7 KIHFKASNAKKAQEAYDKFVKIYGNSTSEEADVIVVLGGDGFMLQSFHQSKEYDKPIYGM 66
+ + + V ++ ++++VLGGDG L++ ++ P+ G+
Sbjct: 46 RGSLHLAPDDMRAMGVEIEVVDADQHAADGCELVLVLGGDGTFLRAAELARNASIPVLGV 105
Query: 67 NCGSVGFLMNEYCIENLVERLSVAVECTFHP-LKMT 101
N G +GFL E E + L V + ++T
Sbjct: 106 NLGRIGFLA-EAEAEAIDAVLEHVVAQDYRVEDRLT 140
>1yt5_A Inorganic polyphosphate/ATP-NAD kinase; domain 1:
alpha/beta domain2: beta sandwich, structural genomics,
PSI, protein structure initiative; 2.30A {Thermotoga
maritima} (A:1-78)
Length = 78
Score = 63.2 bits (154), Expect = 3e-11
Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 6/69 (8%)
Query: 11 KASNAKKAQEA-----YDKFVKIYGNSTSEEADVIVVLGGDGFMLQSFHQSKEYDKPIYG 65
+ + +E AD+IVV+GGDG +L++ ++ P+ G
Sbjct: 11 REKEGEFLKEKISKEHEVIEFGEANAPGRVTADLIVVVGGDGTVLKAAKKA-ADGTPMVG 69
Query: 66 MNCGSVGFL 74
G +GFL
Sbjct: 70 FKAGRLGFL 78
>2an1_A Putative kinase; structural genomics, PSI, protein structure
initiative, midwest center for structural genomics,
MCSG, transferase; 2.00A {Salmonella typhimurium LT2}
(A:1-127,A:265-275)
Length = 138
Score = 55.0 bits (132), Expect = 9e-09
Identities = 23/91 (25%), Positives = 40/91 (43%), Gaps = 1/91 (1%)
Query: 6 QKIHFKASNAKKAQEAYDKFVKIYGNSTSEEADVIVVLGGDGFMLQSFHQSKEYDKPIYG 65
Q + ++AD+ VV+GGDG ML + YD + G
Sbjct: 33 QGYEVIVEQQIAHELQLKNVPTGTLAEIGQQADLAVVVGGDGNMLGAARTLARYDINVIG 92
Query: 66 MNCGSVGFLMNEYCIENLVERLSVAVECTFH 96
+N G++GFL + +N +++LS +E +
Sbjct: 93 INRGNLGFLTDLD-PDNALQQLSDVLEGRYI 122
>3hot_A Transposable element mariner, complete CDS; protein-DNA
complex, synaptic complex, transposase, DNA binding
protein/DNA complex, transferase; HET: 5IU; 3.25A
{Drosophila mauritiana} PDB: 3hos_A* (A:1-65)
Length = 65
Score = 29.7 bits (67), Expect = 0.37
Identities = 6/32 (18%), Positives = 11/32 (34%)
Query: 8 IHFKASNAKKAQEAYDKFVKIYGNSTSEEADV 39
+ F K A E++ V+ +G
Sbjct: 15 LIFCFHLKKTAAESHRMLVEAFGEQVPTVKTC 46
>1hx6_A Protein P3, major capsid protein; bacteriophage PRD1, coat
protein, jelly roll, viral beta barrel, viral protein;
1.65A {Enterobacteria phage PRD1} (A:)
Length = 394
Score = 27.0 bits (59), Expect = 2.5
Identities = 10/17 (58%), Positives = 14/17 (82%)
Query: 60 DKPIYGMNCGSVGFLMN 76
DKPIY + G+VGF++N
Sbjct: 346 DKPIYTLQYGNVGFVVN 362
>2qlv_A Carbon catabolite derepressing protein kinase; heterotrimer,
ATP-binding, carbohydrate metabolism, kinase, membrane,
nucleotide-binding, nucleus; 2.60A {Saccharomyces
cerevisiae} (A:38-171)
Length = 134
Score = 26.4 bits (58), Expect = 3.6
Identities = 11/26 (42%), Positives = 12/26 (46%), Gaps = 4/26 (15%)
Query: 187 VSPFKPRRWHGAI----LPNDVMIEI 208
V+ RWH I P DVM EI
Sbjct: 1 VTKKSKTRWHFGIRSRSYPLDVMGEI 26
>3l6w_A Hemocyanin 1; cupredoxin domain, copper-binding protein,
metal-binding, oxygen binding; 4.00A {Megathura
crenulata} (A:292-491)
Length = 200
Score = 26.2 bits (58), Expect = 4.1
Identities = 19/103 (18%), Positives = 38/103 (36%), Gaps = 23/103 (22%)
Query: 25 FVKIYGNSTSEEADVIVVLGGDGFMLQSFHQSKEYDKPIYGMNCGSVGFLMNEYCIENLV 84
++K +S E A V+LGG M ++ + +D I V
Sbjct: 22 YIKSGTDSDDEYAGSFVILGGAKEMPWAYERLYRFD-------------------ITETV 62
Query: 85 ERLSVAVECTFHPLKMTVFDYDNSICAENILAINEVSIIRKPG 127
L++ + + + YD++ ++L I+R+P
Sbjct: 63 HNLNLTDD-HVK-FRFDLKKYDHTELDASVLP--APIIVRRPN 101
>1nsc_A Neuraminidase; hydrolase(O-glycosyl); HET: NAG SIA; 1.70A
{Influenza b virus} (A:31-190)
Length = 160
Score = 25.5 bits (56), Expect = 6.6
Identities = 6/21 (28%), Positives = 13/21 (61%)
Query: 244 RILSDSHRSWSDRILTAQFSS 264
+D++ S+++ IL Q S+
Sbjct: 102 EAYTDTYHSYANNILRTQESA 122
>1zyo_A Serine protease; beta-barrel, glutamyl endopeptidase,
hydrolase; 2.40A {Sesbania mosaic virus} (A:)
Length = 191
Score = 25.3 bits (54), Expect = 7.6
Identities = 10/61 (16%), Positives = 18/61 (29%)
Query: 12 ASNAKKAQEAYDKFVKIYGNSTSEEADVIVVLGGDGFMLQSFHQSKEYDKPIYGMNCGSV 71
+ KA + V I T+ + G+ +L + H +P G
Sbjct: 5 FYSPVKAGDEPASLVAIKSGPTTIGFGCRTKIDGEDCLLTAHHVWCNSMRPTGLAKAGKQ 64
Query: 72 G 72
Sbjct: 65 V 65
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.320 0.135 0.392
Gapped
Lambda K H
0.267 0.0670 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,935,604
Number of extensions: 84450
Number of successful extensions: 289
Number of sequences better than 10.0: 1
Number of HSP's gapped: 277
Number of HSP's successfully gapped: 20
Length of query: 264
Length of database: 4,956,049
Length adjustment: 87
Effective length of query: 177
Effective length of database: 2,015,014
Effective search space: 356657478
Effective search space used: 356657478
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.7 bits)