RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780754|ref|YP_003065167.1| inorganic polyphosphate/ATP-NAD kinase [Candidatus Liberibacter asiaticus str. psy62] (264 letters) >3pfn_A NAD kinase; structural genomics consortium, SNP, SGC, transferase; 2.70A {Homo sapiens} Length = 365 Score = 145 bits (366), Expect = 1e-35 Identities = 59/252 (23%), Positives = 100/252 (39%), Gaps = 38/252 (15%) Query: 34 SEEADVIVVLGGDGFMLQSFHQSKEYDKPIYGMNCGSVGFLMN------EYCIENLVE-- 85 S + D I+ LGGDG +L + + P+ + GS+GFL + + ++E Sbjct: 106 SNQIDFIICLGGDGTLLYASSLFQGSVPPVMAFHLGSLGFLTPFSFENFQSQVTQVIEGN 165 Query: 86 -------RLSVAVECTFHPLKMTV-------------FDYDNSICAENILAINEVSIIRK 125 RL V V K V D D A +NEV I R Sbjct: 166 AAVVLRSRLKVRVVKELRGKKTAVHNGLGEKGSQAAGLDMDVGKQAMQYQVLNEVVIDRG 225 Query: 126 PGQNQLVQAAKLEVKVDDQVRLPELVCDGLVVSTPIGSTAYNFSALGPILPLESRHLLLT 185 P + ++V +D + + + DG++VSTP GSTAY +A ++ +++T Sbjct: 226 PSS----YLSNVDVYLDGHL-ITTVQGDGVIVSTPTGSTAYAAAAGASMIHPNVPAIMIT 280 Query: 186 PVSPFKPRRWHGAILPNDVMIEIQVLEHKQRPVIATAD---RLAIEPVSRINVTQSS-DI 241 P+ P + ++P V ++I + + + D R I I++T S + Sbjct: 281 PICPHSL-SFRPIVVPAGVELKIMLSPEARNTAWVSFDGRKRQEIRHGDSISITTSCYPL 339 Query: 242 TMRILSDSHRSW 253 + D W Sbjct: 340 PSICVRDPVSDW 351 >2i2c_A Probable inorganic polyphosphate/ATP-NAD kinase 1; NADP bound of lmnadk1, transferase; HET: DTA PG4; 1.85A {Listeria monocytogenes egd-e} PDB: 2i1w_A* 2i2a_A* 2i2b_A* 2i29_A* 2i2d_A* 2i2e_A* 2i2f_A* 2q5f_A* Length = 272 Score = 136 bits (343), Expect = 5e-33 Identities = 51/264 (19%), Positives = 97/264 (36%), Gaps = 21/264 (7%) Query: 7 KIHFKASNAKKAQEAYDKFVKIYGNSTSE----EADVIVVLGGDGFMLQSFHQSKEY--D 60 K + +K+ + +G E E ++++ +GGDG L +FHQ +E + Sbjct: 2 KYMITSKGDEKSDLLRLNMIAGFGEYDMEYDDVEPEIVISIGGDGTFLSAFHQYEERLDE 61 Query: 61 KPIYGMNCGSVGFLMNEY---CIENLVERLSVAVECTFHPLKMTVFDYDNSICAENILAI 117 G++ G +GF + + + + +PL T Y LA+ Sbjct: 62 IAFIGIHTGHLGFYADWRPAEADKLVKLLAKGEYQKVSYPLLKTTVKYGIGKKEATYLAL 121 Query: 118 NEVSIIRKPGQNQLVQAAKLEVKVDDQVRLPELVCDGLVVSTPIGSTAYNFSALGPILPL 177 NE ++ G + V + + DGL +STP G+TAYN S G ++ Sbjct: 122 NESTVKSSGGP-------FVVDVVINDIHFERFRGDGLCMSTPSGTTAYNKSLGGALMHP 174 Query: 178 ESRHLLLTPVSPFKPRRWHGA----ILPNDVMIEIQVLEHKQRPVIATADRLAIEPVSRI 233 + LT ++ R + + P ++ +Q + K + + V I Sbjct: 175 SIEAMQLTEMASINNRVYRTIGSPLVFPKHHVVSLQPVNDKDFQISVDHLSILHRDVQEI 234 Query: 234 NVTQSSDITMRILSDSHRSWSDRI 257 S+ + + R+ Sbjct: 235 RYEVSAK-KIHFARFRSFPFWRRV 257 >1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A* Length = 278 Score = 115 bits (288), Expect = 1e-26 Identities = 58/244 (23%), Positives = 109/244 (44%), Gaps = 23/244 (9%) Query: 13 SNAKKAQEAYDKF---VKIYGNSTS--EEADVIVVLGGDGFMLQSFHQSKEYDKPIYGMN 67 + K+ +EA + V+++ + E D IV +GGDG +L+ + K PI+G+N Sbjct: 40 GHVKRIEEALKRLEVEVELFNQPSEELENFDFIVSVGGDGTILRILQKLK-RCPPIFGIN 98 Query: 68 CGSVGFLMNEYCIENLVERLSVAVECTFHPLKMTVFDYDNSICAENILAINEVSIIRKPG 127 G VG L + E V ++ ++ F + ++LA+NE++++ + Sbjct: 99 TGRVGLLTHAS-----PENFEVELKKAVEKFEVERFPRVSCSAMPDVLALNEIAVLSRKP 153 Query: 128 QNQLVQAAKLEVKVDDQVRLPELVCDGLVVSTPIGSTAYNFSALGPILPLESRHLLLTPV 187 + D V + + CDG +V+T IGST Y FSA GP++ +L P+ Sbjct: 154 AKMIDV-----ALRVDGVEVDRIRCDGFIVATQIGSTGYAFSAGGPVVEPYLECFILIPI 208 Query: 188 SPFKPRRWHGAILPNDVMIEIQVLEHKQRPVIATAD-RLAIEPVSRINVTQSSDITMRIL 246 +PF W ++ + IE+ I AD + +++ I + +S + Sbjct: 209 APF-RFGWKPYVVSMERKIEVIA-----EKAIVVADGQKSVDFDGEITIEKSEFPAVFFK 262 Query: 247 SDSH 250 ++ Sbjct: 263 NEKR 266 >1yt5_A Inorganic polyphosphate/ATP-NAD kinase; domain 1: alpha/beta domain2: beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} Length = 258 Score = 96.5 bits (239), Expect = 5e-21 Identities = 60/250 (24%), Positives = 112/250 (44%), Gaps = 18/250 (7%) Query: 11 KASNAKKAQEAYDKFVKIYGNSTSE---EADVIVVLGGDGFMLQSFHQSKEYDKPIYGMN 67 K K + + + V +G + + AD+IVV+GGDG +L++ ++ + P+ G Sbjct: 13 KEGEFLKEKISKEHEVIEFGEANAPGRVTADLIVVVGGDGTVLKAAKKAAD-GTPMVGFK 71 Query: 68 CGSVGFLMNEYCIENLVERLSVAVECTFHPLKMTVFDYDNSICAENILAINEVSIIRKPG 127 G +GF + Y ++ + L F ++ + A+N+V++ R Sbjct: 72 AGRLGF-LTSYTLDEIDRFLEDLRNWNFREETRWFIQIESELGNHL--ALNDVTLERDLS 128 Query: 128 QNQLVQAAKLEVKVDDQVRLPELVCDGLVVSTPIGSTAYNFSALGPILPLESRHLLLTPV 187 ++EV+V+ + DG+V+STP GSTAY+ S GPI+ E L ++P+ Sbjct: 129 GKM----VEIEVEVEHHSSMWF-FADGVVISTPTGSTAYSLSIGGPIIFPECEVLEISPI 183 Query: 188 SPFKPRRWHGAILPNDVMIEIQVLEHKQRPVIATADRLAIEPVSRINVTQSSDITMRILS 247 +P ++P++ + ++ QR + D + RI V + S +RIL Sbjct: 184 APQF-FLTRSVVIPSNFKVVVES----QRDINMLVDGVLTGKTKRIEVKK-SRRYVRILR 237 Query: 248 DSHRSWSDRI 257 + I Sbjct: 238 PPEYDYVTVI 247 >1u0t_A Inorganic polyphosphate/ATP-NAD kinase; alpha-beta, beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Mycobacterium tuberculosis} SCOP: e.52.1.1 PDB: 1u0r_A 1y3i_A* 1y3h_A Length = 307 Score = 94.3 bits (233), Expect = 3e-20 Identities = 58/228 (25%), Positives = 100/228 (43%), Gaps = 13/228 (5%) Query: 35 EEADVIVVLGGDGFMLQSFHQSKEYDKPIYGMNCGSVGFLMNEY--CIENLVERLSVAVE 92 + ++++VLGGDG L++ ++ P+ G+N G +GFL I+ ++E + Sbjct: 74 DGCELVLVLGGDGTFLRAAELARNASIPVLGVNLGRIGFLAEAEAEAIDAVLEHVVAQDY 133 Query: 93 CTFHPLKMTVFDYDNSICAENILAINEVSIIRKPGQNQLVQAAKLEVKVDDQVRLPELVC 152 L + V A+NEVS+ + P L V D + C Sbjct: 134 RVEDRLTLDVVVRQGGRIVNRGWALNEVSLEKGPRLGVLGV-----VVEIDGRPVSAFGC 188 Query: 153 DGLVVSTPIGSTAYNFSALGPILPLESRHLLLTPVSPFKPRRWHGAILPNDVMIEIQVLE 212 DG++VSTP GSTAY FSA GP+L + +L+ P + + + I I++ E Sbjct: 189 DGVLVSTPTGSTAYAFSAGGPVLWPDLEAILVVPNNAHALFGRP-MVTSPEATIAIEI-E 246 Query: 213 HKQRPVIATAD---RLAIEPVSRINVTQSSDITMRILSDSHRSWSDRI 257 + D + I SR+ VT+ +++ ++DR+ Sbjct: 247 ADGHDALVFCDGRREMLIPAGSRLEVTR-CVTSVKWARLDSAPFTDRL 293 >2an1_A Putative kinase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, transferase; 2.00A {Salmonella typhimurium LT2} Length = 292 Score = 93.8 bits (232), Expect = 3e-20 Identities = 51/228 (22%), Positives = 93/228 (40%), Gaps = 13/228 (5%) Query: 35 EEADVIVVLGGDGFMLQSFHQSKEYDKPIYGMNCGSVGFLMNEY--CIENLVERLSVAVE 92 ++AD+ VV+GGDG ML + YD + G+N G++GFL + + + Sbjct: 62 QQADLAVVVGGDGNMLGAARTLARYDINVIGINRGNLGFLTDLDPDNALQQLSDVLEGRY 121 Query: 93 CTFHPLKMTVFDYDNSICAENILAINEVSIIRKPGQNQLVQAAKLEVKVDDQVRLPELVC 152 + + AINEV + + + D+ Sbjct: 122 ISEKRFLLEAQVCQQDRQKRISTAINEVVLHPGKVAHMI-----EFEVYIDETFAFSQRS 176 Query: 153 DGLVVSTPIGSTAYNFSALGPILPLESRHLLLTPVSPFKPRRWHGAILPNDVMIEIQVLE 212 DGL++STP GSTAY+ SA GPIL + L P+ P ++ + I ++ Sbjct: 177 DGLIISTPTGSTAYSLSAGGPILTPSLDAITLVPMFPHTL-SARPLVINSSSTIRLRF-S 234 Query: 213 HKQRPVIATAD---RLAIEPVSRINVTQSSDITMRILSDSHRSWSDRI 257 H++ + + D L I+ + + + D + ++ S+ + + Sbjct: 235 HRRSDLEISCDSQIALPIQEGEDVLIRR-CDYHLNLIHPKDYSYFNTL 281 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 39.5 bits (92), Expect = 9e-04 Identities = 63/398 (15%), Positives = 99/398 (24%), Gaps = 205/398 (51%) Query: 1 MDRNIQKIH----FKASNAKKAQEAYDKFVKIYGNSTSEEADVIVVLGGDG-----F--- 48 R K F+A A ++ + GG G F Sbjct: 133 AKRPFDKKSNSALFRAVGEGNA--------QLV-----------AIFGGQGNTDDYFEEL 173 Query: 49 --------------------MLQSFHQSKEYDKPIY--GMN----------CGSVGFLMN 76 L ++ + ++ G+N +L Sbjct: 174 RDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYL-- 231 Query: 77 EYCIENLVERLSVAVEC-------------TFHPLKMTV--------------------- 102 LS+ + C T L T Sbjct: 232 ----------LSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAV 281 Query: 103 ----------FDYDNSICAENIL------------------AINEVSI------------ 122 F + + A +L +I E S+ Sbjct: 282 AIAETDSWESF-FVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLS 340 Query: 123 IRKPGQNQLVQAAKLEVKVDDQV--RLPE-------LVCDG---LVVSTPIGSTAYNFS- 169 I Q Q+ Q ++ LP LV +G LVVS P S Y + Sbjct: 341 ISNLTQEQV-Q------DYVNKTNSHLPAGKQVEISLV-NGAKNLVVSGPPQSL-YGLNL 391 Query: 170 ------ALGPI----LPLESRHLLLT----PVS-PFKPRRWHGAIL--PNDVMIEIQVLE 212 A + +P R L + PV+ PF H +L +D + + Sbjct: 392 TLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPF-----HSHLLVPASD-----LINK 441 Query: 213 H-KQRPVIATADRLAIEPVSRINVTQSSDITMRILSDS 249 + V A + I PV + SD +R+LS S Sbjct: 442 DLVKNNVSFNAKDIQI-PV--YDTFDGSD--LRVLSGS 474 Score = 39.2 bits (91), Expect = 0.001 Identities = 46/289 (15%), Positives = 84/289 (29%), Gaps = 110/289 (38%) Query: 9 HFKASNAKKAQEAYDKFVKIYGNSTSEEADVIVVLGGDGFMLQSFHQSK-EYDKPIYGMN 67 F AS + ++F KI T +GF + E Sbjct: 27 FFIASQLQ------EQFNKILPEPT------------EGFAADDEPTTPAEL-------- 60 Query: 68 CGS-VGFLMNEYCIENLVERLSV------AVECTFHPLKMTVFDYDNSI--CAENILAIN 118 G +G++ + + + V E + L+ N I A +L N Sbjct: 61 VGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCY--LE------GNDIHALAAKLLQEN 112 Query: 119 EV------SIIR--------------KPGQNQLVQAAKLEVKVDDQVRL----------- 147 + +I+ K + L +A + +L Sbjct: 113 DTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVG-----EGNAQLVAIFGGQGNTD 167 Query: 148 ---PELVCDGLVVSTPIGSTAYNFSALGPILPLESRHL--LLTPVSPFKPRRWHGAILPN 202 EL + T Y+ +G ++ + L L+ + G L Sbjct: 168 DYFEELR--------DLYQT-YH-VLVGDLIKFSAETLSELIRTTLDAEKVFTQG--L-- 213 Query: 203 DVMIEIQVLEHK-QRPVIATADRLAIEPVS--RINVTQ--SSDITMRIL 246 +++ + LE+ P D L P+S I V Q +T ++L Sbjct: 214 NIL---EWLENPSNTP---DKDYLLSIPISCPLIGVIQLAHYVVTAKLL 256 Score = 30.7 bits (69), Expect = 0.36 Identities = 43/243 (17%), Positives = 85/243 (34%), Gaps = 65/243 (26%) Query: 8 IHFKASNAKKAQEAYDKFV------------KIYGNSTSEEADVIVVLGGDGFMLQSFHQ 55 IHF K+ +E Y + KI+ +E + G + Sbjct: 1674 IHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIF-KEINEHSTSYTFRSEKGLL-----S 1727 Query: 56 SKEYDKPIYGMNCGSVGFLMNEYCIENLVERLSVAVECTF--HPLKMTVFDYDNSICAEN 113 + ++ +P LM + E+L + + + TF H L +Y + Sbjct: 1728 ATQFTQPALT--------LMEKAAFEDLKSKGLIPADATFAGHSLG----EYAALASLAD 1775 Query: 114 ILAINE-VSIIRKPGQNQLVQAAKLEVKVDDQVRLPELVCDGLVVSTPIGSTAYNFSALG 172 +++I V ++ G V + E+ + G++ P G A +FS Sbjct: 1776 VMSIESLVEVVFYRGMTMQVAVPRDELGRSNY---------GMIAINP-GRVAASFSQ-- 1823 Query: 173 PILPLESRHLLLTPVSPFKPRRWHGAILPNDVMIEI--QVLEHKQRPVIATADRLAIEPV 230 E+ ++ V K W ++EI +E++Q +A D A++ V Sbjct: 1824 -----EALQYVVERVG--KRTGW---------LVEIVNYNVENQQ--YVAAGDLRALDTV 1865 Query: 231 SRI 233 + + Sbjct: 1866 TNV 1868 Score = 27.2 bits (60), Expect = 3.6 Identities = 15/112 (13%), Positives = 32/112 (28%), Gaps = 42/112 (37%) Query: 81 ENLVERLSVA-VECTFHPLKMTVFDYDNSICAENILAINEVSIIRKPGQNQLVQAAKLEV 139 + + + L V +++ V+D + + +R + + Sbjct: 437 DLINKDLVKNNVSFNAKDIQIPVYDTFD---GSD---------LRVLSGS-IS------- 476 Query: 140 KVDDQVRLPELVCDGLVVSTPIG-STAYNFSA-----LGP-----ILPLESR 180 +V D ++ P+ T F A GP + L R Sbjct: 477 --------ERIV-D-CIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHR 518 >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 Score = 30.7 bits (68), Expect = 0.35 Identities = 15/56 (26%), Positives = 20/56 (35%), Gaps = 21/56 (37%) Query: 219 IATADRLAIEPVS----------RINVTQSSDITMRILSDSHR--------SWSDR 256 IA ADRL EP S R+ Q D +++ R W+ R Sbjct: 74 IAQADRLTQEPESIRKWREEQRKRL---QELDAASKVMEQEWREKAKKDLEEWNQR 126 >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Score = 29.6 bits (65), Expect = 0.69 Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 9/32 (28%) Query: 119 EVSIIRKPGQNQLVQAAKLEVKVDDQVRLPEL 150 E ++K +QA+ L++ DD P L Sbjct: 18 EKQALKK------LQAS-LKLYADDSA--PAL 40 >3l6w_A Hemocyanin 1; cupredoxin domain, copper-binding protein, metal-binding, oxygen binding; 4.00A {Megathura crenulata} Length = 491 Score = 28.3 bits (63), Expect = 1.8 Identities = 24/129 (18%), Positives = 46/129 (35%), Gaps = 26/129 (20%) Query: 23 DKFVKIYGNSTSEEADVIVVLGGDGFMLQSFHQSKEYDKPIYGMNCGSVGFLMNEYCIEN 82 ++K +S E A V+LGG M ++ + +D I Sbjct: 311 KVYIKSGTDSDDEYAGSFVILGGAKEMPWAYERLYRFD-------------------ITE 351 Query: 83 LVERLSVAVECTFHPLKMTVFDYDNSICAENILAINEVSIIRKPGQNQLVQAAKLEVKVD 142 V L++ + + + YD++ ++L I+R+P +E+ + Sbjct: 352 TVHNLNLTDD-HVK-FRFDLKKYDHTELDASVLP--APIIVRRPNN---AVFDIIEIPIG 404 Query: 143 DQVRLPELV 151 V LP V Sbjct: 405 KDVNLPPKV 413 >1iq8_A Archaeosine tRNA-guanine transglycosylase; (alpha/beta)8 barrel, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii} SCOP: b.122.1.1 c.1.20.1 d.17.6.1 PDB: 1it7_A* 1it8_A* 1j2b_A Length = 582 Score = 27.6 bits (61), Expect = 3.2 Identities = 25/182 (13%), Positives = 48/182 (26%), Gaps = 17/182 (9%) Query: 35 EEADVIVVLGGDGFMLQSFHQSKEYDKPIYGMNCGSVGFLMNEYCIENLVERLSVAVECT 94 EE + G H+ +Y+ I S F + +Y + R + + Sbjct: 71 EELRRKALELG-------IHRMLDYNGIIEV---DSGSFQLMKYGSIEVSNREIIEFQHR 120 Query: 95 FHPLKMTVFDYDNSICAENILAINEVSIIRKPGQNQLVQAAKLEVKVDDQVRLPELVCDG 154 T D A A+ E+ I + +L Sbjct: 121 IGVDIGTFLDIPTPPDAPREQAVKELEITLSRAREAEEIKEIPMNATIQGSTYTDLRRYA 180 Query: 155 LVVSTPIGSTAYNFSALGPILPLESRHLLLTPVS-------PFKPRRWHGAILPNDVMIE 207 + + + + P+L ++ V P +P GA P + Sbjct: 181 ARRLSSMNFEIHPIGGVVPLLESYRFRDVVDIVISSKMALRPDRPVHLFGAGHPIVFALA 240 Query: 208 IQ 209 + Sbjct: 241 VA 242 >3d7r_A Esterase; alpha/beta fold, hydrolase; 2.01A {Staphylococcus aureus subsp} Length = 326 Score = 27.5 bits (60), Expect = 3.2 Identities = 12/90 (13%), Positives = 30/90 (33%), Gaps = 2/90 (2%) Query: 169 SALGPILPLESRHLLLTPVSPFKPRRWHGAILPNDVMIEIQVLEHKQRPVIATADRLAIE 228 S L P R+ ++ V H + +++ +K+ + Sbjct: 12 SGLVPRGSHMIRNRVMNSV--VNKYLLHNRSIMFKNDQDVERFFYKREIENRKKHKQPST 69 Query: 229 PVSRINVTQSSDITMRILSDSHRSWSDRIL 258 + N+ + S M++ + R D+ + Sbjct: 70 LNVKANLEKLSLDDMQVFRFNFRHQIDKKI 99 >1bwd_A ADT, protein (inosamine-phosphate amidinotransferase); streptomycin; 3.10A {Streptomyces griseus} SCOP: d.126.1.2 Length = 348 Score = 27.2 bits (59), Expect = 3.8 Identities = 11/112 (9%), Positives = 23/112 (20%), Gaps = 6/112 (5%) Query: 1 MDRNIQKIHFKASNAKKAQEAYDKFVKIYGNSTSEEADVIVVLGGDGFMLQSFHQSKEYD 60 I + K+ +E + V V G Sbjct: 44 SQEQIPSGAYPDRVLKETEEELHVLAAEL-----TKLGVTVRRPGPRDHSALIKTPDWET 98 Query: 61 KPIYGMNCGSVGFLMNEYCIE-NLVERLSVAVECTFHPLKMTVFDYDNSICA 111 + + + IE + R + L + F + + Sbjct: 99 DGFHDYCPRDGLLSVGQTIIETPMALRSRFLESLAYKDLLLEYFASGSRWLS 150 >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} Length = 129 Score = 27.0 bits (60), Expect = 4.0 Identities = 5/34 (14%), Positives = 11/34 (32%), Gaps = 2/34 (5%) Query: 4 NIQKIHFKASNAKKAQEAYDKFVKIYGNSTSEEA 37 + + +AQ+ + Y S+ A Sbjct: 81 KLGLSQYGEGKNTEAQQTLQQVATQYPG--SDAA 112 >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307 Score = 27.3 bits (59), Expect = 4.2 Identities = 7/37 (18%), Positives = 14/37 (37%) Query: 4 NIQKIHFKASNAKKAQEAYDKFVKIYGNSTSEEADVI 40 + ++ AQ+ + I G S SE+ + Sbjct: 200 AQVLVQLHRADYVAAQKCVRESYSIPGFSGSEDCAAL 236 >1hx6_A Protein P3, major capsid protein; bacteriophage PRD1, coat protein, jelly roll, viral beta barrel, viral protein; 1.65A {Enterobacteria phage PRD1} SCOP: b.121.2.1 b.121.2.1 PDB: 1gw7_A 1gw8_A 1hb5_A 1hb7_A 1hb9_A 1hqn_A 1cjd_A 1w8x_A Length = 394 Score = 27.0 bits (59), Expect = 4.2 Identities = 10/17 (58%), Positives = 14/17 (82%) Query: 60 DKPIYGMNCGSVGFLMN 76 DKPIY + G+VGF++N Sbjct: 346 DKPIYTLQYGNVGFVVN 362 >2dlb_A YOPT; SR412, X-RAY, NESG, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, unknown function; 1.20A {Bacillus subtilis} SCOP: b.174.1.1 Length = 80 Score = 27.0 bits (59), Expect = 4.4 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 1/42 (2%) Query: 109 ICAENILAINEVSIIRKPGQNQLVQAAKLEVKVDDQVRLPEL 150 IC EN+L EVS ++ G + + + +E ++ + LPEL Sbjct: 33 IC-ENLLLSKEVSFLKADGSVENFKLSDMEYEITNTEELPEL 73 >2bon_A Lipid kinase; DAG kinase, ATP-binding, transferase; 1.9A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A Length = 332 Score = 26.8 bits (58), Expect = 5.6 Identities = 8/35 (22%), Positives = 14/35 (40%), Gaps = 3/35 (8%) Query: 35 EEADVIVVLGGDG---FMLQSFHQSKEYDKPIYGM 66 ++ GGDG + + Q + D P G+ Sbjct: 81 FGVATVIAGGGDGTINEVSTALIQCEGDDIPALGI 115 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.320 0.135 0.392 Gapped Lambda K H 0.267 0.0554 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 2,198,284 Number of extensions: 99068 Number of successful extensions: 332 Number of sequences better than 10.0: 1 Number of HSP's gapped: 321 Number of HSP's successfully gapped: 21 Length of query: 264 Length of database: 5,693,230 Length adjustment: 91 Effective length of query: 173 Effective length of database: 3,487,026 Effective search space: 603255498 Effective search space used: 603255498 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 56 (25.7 bits)