RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780754|ref|YP_003065167.1| inorganic
polyphosphate/ATP-NAD kinase [Candidatus Liberibacter asiaticus str.
psy62]
         (264 letters)



>3pfn_A NAD kinase; structural genomics consortium, SNP, SGC, transferase;
           2.70A {Homo sapiens}
          Length = 365

 Score =  145 bits (366), Expect = 1e-35
 Identities = 59/252 (23%), Positives = 100/252 (39%), Gaps = 38/252 (15%)

Query: 34  SEEADVIVVLGGDGFMLQSFHQSKEYDKPIYGMNCGSVGFLMN------EYCIENLVE-- 85
           S + D I+ LGGDG +L +    +    P+   + GS+GFL        +  +  ++E  
Sbjct: 106 SNQIDFIICLGGDGTLLYASSLFQGSVPPVMAFHLGSLGFLTPFSFENFQSQVTQVIEGN 165

Query: 86  -------RLSVAVECTFHPLKMTV-------------FDYDNSICAENILAINEVSIIRK 125
                  RL V V       K  V              D D    A     +NEV I R 
Sbjct: 166 AAVVLRSRLKVRVVKELRGKKTAVHNGLGEKGSQAAGLDMDVGKQAMQYQVLNEVVIDRG 225

Query: 126 PGQNQLVQAAKLEVKVDDQVRLPELVCDGLVVSTPIGSTAYNFSALGPILPLESRHLLLT 185
           P        + ++V +D  + +  +  DG++VSTP GSTAY  +A   ++      +++T
Sbjct: 226 PSS----YLSNVDVYLDGHL-ITTVQGDGVIVSTPTGSTAYAAAAGASMIHPNVPAIMIT 280

Query: 186 PVSPFKPRRWHGAILPNDVMIEIQVLEHKQRPVIATAD---RLAIEPVSRINVTQSS-DI 241
           P+ P     +   ++P  V ++I +    +     + D   R  I     I++T S   +
Sbjct: 281 PICPHSL-SFRPIVVPAGVELKIMLSPEARNTAWVSFDGRKRQEIRHGDSISITTSCYPL 339

Query: 242 TMRILSDSHRSW 253
               + D    W
Sbjct: 340 PSICVRDPVSDW 351


>2i2c_A Probable inorganic polyphosphate/ATP-NAD kinase 1; NADP bound of
           lmnadk1, transferase; HET: DTA PG4; 1.85A {Listeria
           monocytogenes egd-e} PDB: 2i1w_A* 2i2a_A* 2i2b_A*
           2i29_A* 2i2d_A* 2i2e_A* 2i2f_A* 2q5f_A*
          Length = 272

 Score =  136 bits (343), Expect = 5e-33
 Identities = 51/264 (19%), Positives = 97/264 (36%), Gaps = 21/264 (7%)

Query: 7   KIHFKASNAKKAQEAYDKFVKIYGNSTSE----EADVIVVLGGDGFMLQSFHQSKEY--D 60
           K    +   +K+       +  +G    E    E ++++ +GGDG  L +FHQ +E   +
Sbjct: 2   KYMITSKGDEKSDLLRLNMIAGFGEYDMEYDDVEPEIVISIGGDGTFLSAFHQYEERLDE 61

Query: 61  KPIYGMNCGSVGFLMNEY---CIENLVERLSVAVECTFHPLKMTVFDYDNSICAENILAI 117
               G++ G +GF  +       + +        +   +PL  T   Y         LA+
Sbjct: 62  IAFIGIHTGHLGFYADWRPAEADKLVKLLAKGEYQKVSYPLLKTTVKYGIGKKEATYLAL 121

Query: 118 NEVSIIRKPGQNQLVQAAKLEVKVDDQVRLPELVCDGLVVSTPIGSTAYNFSALGPILPL 177
           NE ++    G         +   V + +       DGL +STP G+TAYN S  G ++  
Sbjct: 122 NESTVKSSGGP-------FVVDVVINDIHFERFRGDGLCMSTPSGTTAYNKSLGGALMHP 174

Query: 178 ESRHLLLTPVSPFKPRRWHGA----ILPNDVMIEIQVLEHKQRPVIATADRLAIEPVSRI 233
               + LT ++    R +       + P   ++ +Q +  K   +      +    V  I
Sbjct: 175 SIEAMQLTEMASINNRVYRTIGSPLVFPKHHVVSLQPVNDKDFQISVDHLSILHRDVQEI 234

Query: 234 NVTQSSDITMRILSDSHRSWSDRI 257
               S+   +         +  R+
Sbjct: 235 RYEVSAK-KIHFARFRSFPFWRRV 257


>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding,
           structural genomics, NADP, PSI, protein structure
           initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus}
           SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A*
          Length = 278

 Score =  115 bits (288), Expect = 1e-26
 Identities = 58/244 (23%), Positives = 109/244 (44%), Gaps = 23/244 (9%)

Query: 13  SNAKKAQEAYDKF---VKIYGNSTS--EEADVIVVLGGDGFMLQSFHQSKEYDKPIYGMN 67
            + K+ +EA  +    V+++   +   E  D IV +GGDG +L+   + K    PI+G+N
Sbjct: 40  GHVKRIEEALKRLEVEVELFNQPSEELENFDFIVSVGGDGTILRILQKLK-RCPPIFGIN 98

Query: 68  CGSVGFLMNEYCIENLVERLSVAVECTFHPLKMTVFDYDNSICAENILAINEVSIIRKPG 127
            G VG L +        E   V ++      ++  F   +     ++LA+NE++++ +  
Sbjct: 99  TGRVGLLTHAS-----PENFEVELKKAVEKFEVERFPRVSCSAMPDVLALNEIAVLSRKP 153

Query: 128 QNQLVQAAKLEVKVDDQVRLPELVCDGLVVSTPIGSTAYNFSALGPILPLESRHLLLTPV 187
              +           D V +  + CDG +V+T IGST Y FSA GP++       +L P+
Sbjct: 154 AKMIDV-----ALRVDGVEVDRIRCDGFIVATQIGSTGYAFSAGGPVVEPYLECFILIPI 208

Query: 188 SPFKPRRWHGAILPNDVMIEIQVLEHKQRPVIATAD-RLAIEPVSRINVTQSSDITMRIL 246
           +PF    W   ++  +  IE+          I  AD + +++    I + +S    +   
Sbjct: 209 APF-RFGWKPYVVSMERKIEVIA-----EKAIVVADGQKSVDFDGEITIEKSEFPAVFFK 262

Query: 247 SDSH 250
           ++  
Sbjct: 263 NEKR 266


>1yt5_A Inorganic polyphosphate/ATP-NAD kinase; domain 1: alpha/beta
           domain2: beta sandwich, structural genomics, PSI,
           protein structure initiative; 2.30A {Thermotoga
           maritima}
          Length = 258

 Score = 96.5 bits (239), Expect = 5e-21
 Identities = 60/250 (24%), Positives = 112/250 (44%), Gaps = 18/250 (7%)

Query: 11  KASNAKKAQEAYDKFVKIYGNSTSE---EADVIVVLGGDGFMLQSFHQSKEYDKPIYGMN 67
           K     K + + +  V  +G + +     AD+IVV+GGDG +L++  ++ +   P+ G  
Sbjct: 13  KEGEFLKEKISKEHEVIEFGEANAPGRVTADLIVVVGGDGTVLKAAKKAAD-GTPMVGFK 71

Query: 68  CGSVGFLMNEYCIENLVERLSVAVECTFHPLKMTVFDYDNSICAENILAINEVSIIRKPG 127
            G +GF +  Y ++ +   L       F          ++ +      A+N+V++ R   
Sbjct: 72  AGRLGF-LTSYTLDEIDRFLEDLRNWNFREETRWFIQIESELGNHL--ALNDVTLERDLS 128

Query: 128 QNQLVQAAKLEVKVDDQVRLPELVCDGLVVSTPIGSTAYNFSALGPILPLESRHLLLTPV 187
                   ++EV+V+    +     DG+V+STP GSTAY+ S  GPI+  E   L ++P+
Sbjct: 129 GKM----VEIEVEVEHHSSMWF-FADGVVISTPTGSTAYSLSIGGPIIFPECEVLEISPI 183

Query: 188 SPFKPRRWHGAILPNDVMIEIQVLEHKQRPVIATADRLAIEPVSRINVTQSSDITMRILS 247
           +P         ++P++  + ++     QR +    D +      RI V + S   +RIL 
Sbjct: 184 APQF-FLTRSVVIPSNFKVVVES----QRDINMLVDGVLTGKTKRIEVKK-SRRYVRILR 237

Query: 248 DSHRSWSDRI 257
                +   I
Sbjct: 238 PPEYDYVTVI 247


>1u0t_A Inorganic polyphosphate/ATP-NAD kinase; alpha-beta, beta sandwich,
           structural genomics, PSI, protein structure initiative;
           2.30A {Mycobacterium tuberculosis} SCOP: e.52.1.1 PDB:
           1u0r_A 1y3i_A* 1y3h_A
          Length = 307

 Score = 94.3 bits (233), Expect = 3e-20
 Identities = 58/228 (25%), Positives = 100/228 (43%), Gaps = 13/228 (5%)

Query: 35  EEADVIVVLGGDGFMLQSFHQSKEYDKPIYGMNCGSVGFLMNEY--CIENLVERLSVAVE 92
           +  ++++VLGGDG  L++   ++    P+ G+N G +GFL       I+ ++E +     
Sbjct: 74  DGCELVLVLGGDGTFLRAAELARNASIPVLGVNLGRIGFLAEAEAEAIDAVLEHVVAQDY 133

Query: 93  CTFHPLKMTVFDYDNSICAENILAINEVSIIRKPGQNQLVQAAKLEVKVDDQVRLPELVC 152
                L + V             A+NEVS+ + P    L       V   D   +    C
Sbjct: 134 RVEDRLTLDVVVRQGGRIVNRGWALNEVSLEKGPRLGVLGV-----VVEIDGRPVSAFGC 188

Query: 153 DGLVVSTPIGSTAYNFSALGPILPLESRHLLLTPVSPFKPRRWHGAILPNDVMIEIQVLE 212
           DG++VSTP GSTAY FSA GP+L  +   +L+ P +          +   +  I I++ E
Sbjct: 189 DGVLVSTPTGSTAYAFSAGGPVLWPDLEAILVVPNNAHALFGRP-MVTSPEATIAIEI-E 246

Query: 213 HKQRPVIATAD---RLAIEPVSRINVTQSSDITMRILSDSHRSWSDRI 257
                 +   D    + I   SR+ VT+    +++        ++DR+
Sbjct: 247 ADGHDALVFCDGRREMLIPAGSRLEVTR-CVTSVKWARLDSAPFTDRL 293


>2an1_A Putative kinase; structural genomics, PSI, protein structure
           initiative, midwest center for structural genomics,
           MCSG, transferase; 2.00A {Salmonella typhimurium LT2}
          Length = 292

 Score = 93.8 bits (232), Expect = 3e-20
 Identities = 51/228 (22%), Positives = 93/228 (40%), Gaps = 13/228 (5%)

Query: 35  EEADVIVVLGGDGFMLQSFHQSKEYDKPIYGMNCGSVGFLMNEY--CIENLVERLSVAVE 92
           ++AD+ VV+GGDG ML +      YD  + G+N G++GFL +         +  +     
Sbjct: 62  QQADLAVVVGGDGNMLGAARTLARYDINVIGINRGNLGFLTDLDPDNALQQLSDVLEGRY 121

Query: 93  CTFHPLKMTVFDYDNSICAENILAINEVSIIRKPGQNQLVQAAKLEVKVDDQVRLPELVC 152
            +     +               AINEV +      + +           D+        
Sbjct: 122 ISEKRFLLEAQVCQQDRQKRISTAINEVVLHPGKVAHMI-----EFEVYIDETFAFSQRS 176

Query: 153 DGLVVSTPIGSTAYNFSALGPILPLESRHLLLTPVSPFKPRRWHGAILPNDVMIEIQVLE 212
           DGL++STP GSTAY+ SA GPIL      + L P+ P         ++ +   I ++   
Sbjct: 177 DGLIISTPTGSTAYSLSAGGPILTPSLDAITLVPMFPHTL-SARPLVINSSSTIRLRF-S 234

Query: 213 HKQRPVIATAD---RLAIEPVSRINVTQSSDITMRILSDSHRSWSDRI 257
           H++  +  + D    L I+    + + +  D  + ++     S+ + +
Sbjct: 235 HRRSDLEISCDSQIALPIQEGEDVLIRR-CDYHLNLIHPKDYSYFNTL 281


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 39.5 bits (92), Expect = 9e-04
 Identities = 63/398 (15%), Positives = 99/398 (24%), Gaps = 205/398 (51%)

Query: 1   MDRNIQKIH----FKASNAKKAQEAYDKFVKIYGNSTSEEADVIVVLGGDG-----F--- 48
             R   K      F+A     A        ++             + GG G     F   
Sbjct: 133 AKRPFDKKSNSALFRAVGEGNA--------QLV-----------AIFGGQGNTDDYFEEL 173

Query: 49  --------------------MLQSFHQSKEYDKPIY--GMN----------CGSVGFLMN 76
                                L    ++    + ++  G+N               +L  
Sbjct: 174 RDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYL-- 231

Query: 77  EYCIENLVERLSVAVEC-------------TFHPLKMTV--------------------- 102
                     LS+ + C             T   L  T                      
Sbjct: 232 ----------LSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAV 281

Query: 103 ----------FDYDNSICAENIL------------------AINEVSI------------ 122
                     F + +   A  +L                  +I E S+            
Sbjct: 282 AIAETDSWESF-FVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLS 340

Query: 123 IRKPGQNQLVQAAKLEVKVDDQV--RLPE-------LVCDG---LVVSTPIGSTAYNFS- 169
           I    Q Q+ Q         ++    LP        LV +G   LVVS P  S  Y  + 
Sbjct: 341 ISNLTQEQV-Q------DYVNKTNSHLPAGKQVEISLV-NGAKNLVVSGPPQSL-YGLNL 391

Query: 170 ------ALGPI----LPLESRHLLLT----PVS-PFKPRRWHGAIL--PNDVMIEIQVLE 212
                 A   +    +P   R L  +    PV+ PF     H  +L   +D      + +
Sbjct: 392 TLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPF-----HSHLLVPASD-----LINK 441

Query: 213 H-KQRPVIATADRLAIEPVSRINVTQSSDITMRILSDS 249
              +  V   A  + I PV   +    SD  +R+LS S
Sbjct: 442 DLVKNNVSFNAKDIQI-PV--YDTFDGSD--LRVLSGS 474



 Score = 39.2 bits (91), Expect = 0.001
 Identities = 46/289 (15%), Positives = 84/289 (29%), Gaps = 110/289 (38%)

Query: 9   HFKASNAKKAQEAYDKFVKIYGNSTSEEADVIVVLGGDGFMLQSFHQSK-EYDKPIYGMN 67
            F AS  +      ++F KI    T            +GF       +  E         
Sbjct: 27  FFIASQLQ------EQFNKILPEPT------------EGFAADDEPTTPAEL-------- 60

Query: 68  CGS-VGFLMNEYCIENLVERLSV------AVECTFHPLKMTVFDYDNSI--CAENILAIN 118
            G  +G++ +      + +   V        E  +  L+       N I   A  +L  N
Sbjct: 61  VGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCY--LE------GNDIHALAAKLLQEN 112

Query: 119 EV------SIIR--------------KPGQNQLVQAAKLEVKVDDQVRL----------- 147
           +        +I+              K   + L +A       +   +L           
Sbjct: 113 DTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVG-----EGNAQLVAIFGGQGNTD 167

Query: 148 ---PELVCDGLVVSTPIGSTAYNFSALGPILPLESRHL--LLTPVSPFKPRRWHGAILPN 202
               EL          +  T Y+   +G ++   +  L  L+      +     G  L  
Sbjct: 168 DYFEELR--------DLYQT-YH-VLVGDLIKFSAETLSELIRTTLDAEKVFTQG--L-- 213

Query: 203 DVMIEIQVLEHK-QRPVIATADRLAIEPVS--RINVTQ--SSDITMRIL 246
           +++   + LE+    P     D L   P+S   I V Q     +T ++L
Sbjct: 214 NIL---EWLENPSNTP---DKDYLLSIPISCPLIGVIQLAHYVVTAKLL 256



 Score = 30.7 bits (69), Expect = 0.36
 Identities = 43/243 (17%), Positives = 85/243 (34%), Gaps = 65/243 (26%)

Query: 8    IHFKASNAKKAQEAYDKFV------------KIYGNSTSEEADVIVVLGGDGFMLQSFHQ 55
            IHF     K+ +E Y   +            KI+    +E +         G +      
Sbjct: 1674 IHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIF-KEINEHSTSYTFRSEKGLL-----S 1727

Query: 56   SKEYDKPIYGMNCGSVGFLMNEYCIENLVERLSVAVECTF--HPLKMTVFDYDNSICAEN 113
            + ++ +P           LM +   E+L  +  +  + TF  H L     +Y       +
Sbjct: 1728 ATQFTQPALT--------LMEKAAFEDLKSKGLIPADATFAGHSLG----EYAALASLAD 1775

Query: 114  ILAINE-VSIIRKPGQNQLVQAAKLEVKVDDQVRLPELVCDGLVVSTPIGSTAYNFSALG 172
            +++I   V ++   G    V   + E+   +          G++   P G  A +FS   
Sbjct: 1776 VMSIESLVEVVFYRGMTMQVAVPRDELGRSNY---------GMIAINP-GRVAASFSQ-- 1823

Query: 173  PILPLESRHLLLTPVSPFKPRRWHGAILPNDVMIEI--QVLEHKQRPVIATADRLAIEPV 230
                 E+   ++  V   K   W         ++EI    +E++Q   +A  D  A++ V
Sbjct: 1824 -----EALQYVVERVG--KRTGW---------LVEIVNYNVENQQ--YVAAGDLRALDTV 1865

Query: 231  SRI 233
            + +
Sbjct: 1866 TNV 1868



 Score = 27.2 bits (60), Expect = 3.6
 Identities = 15/112 (13%), Positives = 32/112 (28%), Gaps = 42/112 (37%)

Query: 81  ENLVERLSVA-VECTFHPLKMTVFDYDNSICAENILAINEVSIIRKPGQNQLVQAAKLEV 139
           + + + L    V      +++ V+D  +     +         +R    + +        
Sbjct: 437 DLINKDLVKNNVSFNAKDIQIPVYDTFD---GSD---------LRVLSGS-IS------- 476

Query: 140 KVDDQVRLPELVCDGLVVSTPIG-STAYNFSA-----LGP-----ILPLESR 180
                     +V D  ++  P+   T   F A      GP     +  L  R
Sbjct: 477 --------ERIV-D-CIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHR 518


>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
           vesicle, membrane, Ca structural protein; 7.94A {Bos
           taurus}
          Length = 190

 Score = 30.7 bits (68), Expect = 0.35
 Identities = 15/56 (26%), Positives = 20/56 (35%), Gaps = 21/56 (37%)

Query: 219 IATADRLAIEPVS----------RINVTQSSDITMRILSDSHR--------SWSDR 256
           IA ADRL  EP S          R+   Q  D   +++    R         W+ R
Sbjct: 74  IAQADRLTQEPESIRKWREEQRKRL---QELDAASKVMEQEWREKAKKDLEEWNQR 126


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
           photosynthetic reaction center, peripheral antenna; HET:
           CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 29.6 bits (65), Expect = 0.69
 Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 9/32 (28%)

Query: 119 EVSIIRKPGQNQLVQAAKLEVKVDDQVRLPEL 150
           E   ++K      +QA+ L++  DD    P L
Sbjct: 18  EKQALKK------LQAS-LKLYADDSA--PAL 40


>3l6w_A Hemocyanin 1; cupredoxin domain, copper-binding protein,
           metal-binding, oxygen binding; 4.00A {Megathura
           crenulata}
          Length = 491

 Score = 28.3 bits (63), Expect = 1.8
 Identities = 24/129 (18%), Positives = 46/129 (35%), Gaps = 26/129 (20%)

Query: 23  DKFVKIYGNSTSEEADVIVVLGGDGFMLQSFHQSKEYDKPIYGMNCGSVGFLMNEYCIEN 82
             ++K   +S  E A   V+LGG   M  ++ +   +D                   I  
Sbjct: 311 KVYIKSGTDSDDEYAGSFVILGGAKEMPWAYERLYRFD-------------------ITE 351

Query: 83  LVERLSVAVECTFHPLKMTVFDYDNSICAENILAINEVSIIRKPGQNQLVQAAKLEVKVD 142
            V  L++  +      +  +  YD++    ++L      I+R+P          +E+ + 
Sbjct: 352 TVHNLNLTDD-HVK-FRFDLKKYDHTELDASVLP--APIIVRRPNN---AVFDIIEIPIG 404

Query: 143 DQVRLPELV 151
             V LP  V
Sbjct: 405 KDVNLPPKV 413


>1iq8_A Archaeosine tRNA-guanine transglycosylase; (alpha/beta)8 barrel,
           riken structural genomics/proteomics initiative, RSGI;
           2.20A {Pyrococcus horikoshii} SCOP: b.122.1.1 c.1.20.1
           d.17.6.1 PDB: 1it7_A* 1it8_A* 1j2b_A
          Length = 582

 Score = 27.6 bits (61), Expect = 3.2
 Identities = 25/182 (13%), Positives = 48/182 (26%), Gaps = 17/182 (9%)

Query: 35  EEADVIVVLGGDGFMLQSFHQSKEYDKPIYGMNCGSVGFLMNEYCIENLVERLSVAVECT 94
           EE     +  G        H+  +Y+  I      S  F + +Y    +  R  +  +  
Sbjct: 71  EELRRKALELG-------IHRMLDYNGIIEV---DSGSFQLMKYGSIEVSNREIIEFQHR 120

Query: 95  FHPLKMTVFDYDNSICAENILAINEVSIIRKPGQNQLVQAAKLEVKVDDQVRLPELVCDG 154
                 T  D      A    A+ E+ I     +                    +L    
Sbjct: 121 IGVDIGTFLDIPTPPDAPREQAVKELEITLSRAREAEEIKEIPMNATIQGSTYTDLRRYA 180

Query: 155 LVVSTPIGSTAYNFSALGPILPLESRHLLLTPVS-------PFKPRRWHGAILPNDVMIE 207
               + +    +    + P+L       ++  V        P +P    GA  P    + 
Sbjct: 181 ARRLSSMNFEIHPIGGVVPLLESYRFRDVVDIVISSKMALRPDRPVHLFGAGHPIVFALA 240

Query: 208 IQ 209
           + 
Sbjct: 241 VA 242


>3d7r_A Esterase; alpha/beta fold, hydrolase; 2.01A {Staphylococcus aureus
           subsp}
          Length = 326

 Score = 27.5 bits (60), Expect = 3.2
 Identities = 12/90 (13%), Positives = 30/90 (33%), Gaps = 2/90 (2%)

Query: 169 SALGPILPLESRHLLLTPVSPFKPRRWHGAILPNDVMIEIQVLEHKQRPVIATADRLAIE 228
           S L P      R+ ++  V        H   +      +++   +K+        +    
Sbjct: 12  SGLVPRGSHMIRNRVMNSV--VNKYLLHNRSIMFKNDQDVERFFYKREIENRKKHKQPST 69

Query: 229 PVSRINVTQSSDITMRILSDSHRSWSDRIL 258
              + N+ + S   M++   + R   D+ +
Sbjct: 70  LNVKANLEKLSLDDMQVFRFNFRHQIDKKI 99


>1bwd_A ADT, protein (inosamine-phosphate amidinotransferase);
           streptomycin; 3.10A {Streptomyces griseus} SCOP:
           d.126.1.2
          Length = 348

 Score = 27.2 bits (59), Expect = 3.8
 Identities = 11/112 (9%), Positives = 23/112 (20%), Gaps = 6/112 (5%)

Query: 1   MDRNIQKIHFKASNAKKAQEAYDKFVKIYGNSTSEEADVIVVLGGDGFMLQSFHQSKEYD 60
               I    +     K+ +E               +  V V   G               
Sbjct: 44  SQEQIPSGAYPDRVLKETEEELHVLAAEL-----TKLGVTVRRPGPRDHSALIKTPDWET 98

Query: 61  KPIYGMNCGSVGFLMNEYCIE-NLVERLSVAVECTFHPLKMTVFDYDNSICA 111
              +          + +  IE  +  R        +  L +  F   +   +
Sbjct: 99  DGFHDYCPRDGLLSVGQTIIETPMALRSRFLESLAYKDLLLEYFASGSRWLS 150


>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A
           {Xanthomonas campestris}
          Length = 129

 Score = 27.0 bits (60), Expect = 4.0
 Identities = 5/34 (14%), Positives = 11/34 (32%), Gaps = 2/34 (5%)

Query: 4   NIQKIHFKASNAKKAQEAYDKFVKIYGNSTSEEA 37
            +    +      +AQ+   +    Y    S+ A
Sbjct: 81  KLGLSQYGEGKNTEAQQTLQQVATQYPG--SDAA 112


>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein
           structure initiative, PSI, center for eukaryotic
           structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
          Length = 307

 Score = 27.3 bits (59), Expect = 4.2
 Identities = 7/37 (18%), Positives = 14/37 (37%)

Query: 4   NIQKIHFKASNAKKAQEAYDKFVKIYGNSTSEEADVI 40
               +    ++   AQ+   +   I G S SE+   +
Sbjct: 200 AQVLVQLHRADYVAAQKCVRESYSIPGFSGSEDCAAL 236


>1hx6_A Protein P3, major capsid protein; bacteriophage PRD1, coat protein,
           jelly roll, viral beta barrel, viral protein; 1.65A
           {Enterobacteria phage PRD1} SCOP: b.121.2.1 b.121.2.1
           PDB: 1gw7_A 1gw8_A 1hb5_A 1hb7_A 1hb9_A 1hqn_A 1cjd_A
           1w8x_A
          Length = 394

 Score = 27.0 bits (59), Expect = 4.2
 Identities = 10/17 (58%), Positives = 14/17 (82%)

Query: 60  DKPIYGMNCGSVGFLMN 76
           DKPIY +  G+VGF++N
Sbjct: 346 DKPIYTLQYGNVGFVVN 362


>2dlb_A YOPT; SR412, X-RAY, NESG, structural genomics, PSI, protein
           structure initiative, northeast structural genomics
           consortium, unknown function; 1.20A {Bacillus subtilis}
           SCOP: b.174.1.1
          Length = 80

 Score = 27.0 bits (59), Expect = 4.4
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 1/42 (2%)

Query: 109 ICAENILAINEVSIIRKPGQNQLVQAAKLEVKVDDQVRLPEL 150
           IC EN+L   EVS ++  G  +  + + +E ++ +   LPEL
Sbjct: 33  IC-ENLLLSKEVSFLKADGSVENFKLSDMEYEITNTEELPEL 73


>2bon_A Lipid kinase; DAG kinase, ATP-binding, transferase; 1.9A
           {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
          Length = 332

 Score = 26.8 bits (58), Expect = 5.6
 Identities = 8/35 (22%), Positives = 14/35 (40%), Gaps = 3/35 (8%)

Query: 35  EEADVIVVLGGDG---FMLQSFHQSKEYDKPIYGM 66
                ++  GGDG    +  +  Q +  D P  G+
Sbjct: 81  FGVATVIAGGGDGTINEVSTALIQCEGDDIPALGI 115


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.320    0.135    0.392 

Gapped
Lambda     K      H
   0.267   0.0554    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 2,198,284
Number of extensions: 99068
Number of successful extensions: 332
Number of sequences better than 10.0: 1
Number of HSP's gapped: 321
Number of HSP's successfully gapped: 21
Length of query: 264
Length of database: 5,693,230
Length adjustment: 91
Effective length of query: 173
Effective length of database: 3,487,026
Effective search space: 603255498
Effective search space used: 603255498
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.7 bits)