HHsearch alignment for GI: 254780755 and conserved domain: COG0142
>COG0142 IspA Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism].
Probab=100.00 E-value=0 Score=530.11 Aligned_cols=314 Identities=39% Similarity=0.649 Sum_probs=297.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHH----HHHHHHHHHHHHHHH
Q ss_conf 7999999999999999998607-78758999999999679822799999999997089857----866665578999999
Q gi|254780755|r 3 MLEDLTLKDMEKVNFLILKRIC-SDVEMIPDVVKYLIFSGGKRLRPMLTLATALMLEYRGD----NHVLLACAIEFIHTA 77 (322)
Q Consensus 3 ~l~~~~~~~l~~v~~~i~~~~~-~~~~~l~~~~~~~~~~gGKr~Rp~l~~l~~~~~~~~~~----~~~~~a~~iEliH~a 77 (322)
T Consensus 2 ~~~~~~~~~~~~i~~~L~~~l~~~~~~~l~~a~~~~~~aGGKrlRP~l~l~~~~~~~~~~~~~~~~~~~~a~avEliH~~ 81 (322)
T COG0142 2 DLLALLLKRLARIEELLSELLSGSDPELLLEAMRYLLLAGGKRLRPLLVLLAAEALGIDLETGGNDALDLAAAIELIHTA 81 (322)
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 17899999999999999987175663889999997540687008899999999876986432307899999999999999
Q ss_pred HHHHHHHHCHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHHHHHHCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 9875211011220011012101001102343124578888764210243--11000123456777777545655421322
Q gi|254780755|r 78 TLLHDDVVDDSALRRGKVAARLVWGNQTSVLVGDFLLSQAFCMVIETKS--QEALEALSLVACTLAEGELRQLSLSKNLD 155 (322)
Q Consensus 78 sLiHDDI~D~~~~RRg~~t~~~~~G~~~Ail~GD~l~~~a~~~l~~~~~--~~~~~~~~~~~~~l~~Gq~~d~~~~~~~~ 155 (322)
T Consensus 82 SLiHDDvmD~s~~RRG~pt~~~~~g~~~AIlaGD~L~~~Af~~l~~~~~~~~~~~~~~~~~~~~~~~GQ~lDl~~~~~~- 160 (322)
T COG0142 82 SLIHDDLMDDDDLRRGKPTVHAKFGEATAILAGDALLAAAFELLSKLGSEALEAIKALAEAINGLCGGQALDLAFENKP- 160 (322)
T ss_pred HHHHHHHCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-
T ss_conf 9998651148864378975666736237999989999999999987585227999999999999977289998667889-
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCC
Q ss_conf 10357898998643355554432100011222210157999997311168988764112367000384012345421365
Q gi|254780755|r 156 VTEEDYLHVIKSKTAVLFSAALEVSSLIAGVQNSVRQALKSYGMNLGIAFQLVDDVLDYRGEVNEMGKNIGEDFRNGKPT 235 (322)
Q Consensus 156 ~s~~~y~~ii~~KTa~Lf~~~~~~ga~lag~~~~~~~~l~~fG~~lG~afQI~DD~ld~~g~~~~~GK~~g~Dl~egk~T 235 (322)
T Consensus 161 ~t~e~y~~~i~~KTa~L~~~a~~~ga~la~~~~~~~~~l~~~g~~lGlaFQi~DDiLD~~~d~~~lGK~~g~Dl~~gK~T 240 (322)
T COG0142 161 VTLEEYLRVIELKTAALFAAAAVLGAILAGADEELLEALEDYGRNLGLAFQIQDDILDITGDEEELGKPVGSDLKEGKPT 240 (322)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCHHHHHHCCCC
T ss_conf 99999999999989999999999999981998999999999999877888867747750587276289743568818852
Q ss_pred CCCCHHHHCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 32100110143110001343203689998999999999997496999999999999999998420899989999999999
Q gi|254780755|r 236 LPVILAFQRGTKREKNFWKSTINDGKISVENLKKAFIIMRENRALVDTEYRAYSYGQKAKDSLRCLPDSSWKKSLMEVVD 315 (322)
Q Consensus 236 lpii~al~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~ll~~~gai~~~~~~~~~~~~~A~~~L~~lp~~~~k~~L~~L~~ 315 (322)
T Consensus 241 ~p~l~~l~~~~~~~~-~~~~~~~~~~----~~~~~~~~~~~~g~~~~~~~~a~~~~~~a~~~L~~l~~~~~~~~L~~la~ 315 (322)
T COG0142 241 LPVLLALEKANEDQK-LLRILLEGGG----EVEEALELLRKSGAIEYAKNLAKTYVEKAKEALEKLPDSEAKEALLELAD 315 (322)
T ss_pred HHHHHHHHHCCHHHH-HHHHHHHHHH----HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 999999984756567-8988751014----69999999997053899999999999999999884798368999999999
Q ss_pred HHHCCCC
Q ss_conf 9960379
Q gi|254780755|r 316 FCLQRLN 322 (322)
Q Consensus 316 ~ii~R~~ 322 (322)
T Consensus 316 ~~~~R~~ 322 (322)
T COG0142 316 FIIKRKY 322 (322)
T ss_pred HHHHCCC
T ss_conf 9986129