HHsearch alignment for GI: 254780755 and conserved domain: COG0142

>COG0142 IspA Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism].
Probab=100.00  E-value=0  Score=530.11  Aligned_cols=314  Identities=39%  Similarity=0.649  Sum_probs=297.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHH----HHHHHHHHHHHHHHH
Q ss_conf             7999999999999999998607-78758999999999679822799999999997089857----866665578999999
Q gi|254780755|r    3 MLEDLTLKDMEKVNFLILKRIC-SDVEMIPDVVKYLIFSGGKRLRPMLTLATALMLEYRGD----NHVLLACAIEFIHTA   77 (322)
Q Consensus         3 ~l~~~~~~~l~~v~~~i~~~~~-~~~~~l~~~~~~~~~~gGKr~Rp~l~~l~~~~~~~~~~----~~~~~a~~iEliH~a   77 (322)
T Consensus         2 ~~~~~~~~~~~~i~~~L~~~l~~~~~~~l~~a~~~~~~aGGKrlRP~l~l~~~~~~~~~~~~~~~~~~~~a~avEliH~~   81 (322)
T COG0142           2 DLLALLLKRLARIEELLSELLSGSDPELLLEAMRYLLLAGGKRLRPLLVLLAAEALGIDLETGGNDALDLAAAIELIHTA   81 (322)
T ss_pred             CHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             17899999999999999987175663889999997540687008899999999876986432307899999999999999


Q ss_pred             HHHHHHHHCHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHHHHHHCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             9875211011220011012101001102343124578888764210243--11000123456777777545655421322
Q gi|254780755|r   78 TLLHDDVVDDSALRRGKVAARLVWGNQTSVLVGDFLLSQAFCMVIETKS--QEALEALSLVACTLAEGELRQLSLSKNLD  155 (322)
Q Consensus        78 sLiHDDI~D~~~~RRg~~t~~~~~G~~~Ail~GD~l~~~a~~~l~~~~~--~~~~~~~~~~~~~l~~Gq~~d~~~~~~~~  155 (322)
T Consensus        82 SLiHDDvmD~s~~RRG~pt~~~~~g~~~AIlaGD~L~~~Af~~l~~~~~~~~~~~~~~~~~~~~~~~GQ~lDl~~~~~~-  160 (322)
T COG0142          82 SLIHDDLMDDDDLRRGKPTVHAKFGEATAILAGDALLAAAFELLSKLGSEALEAIKALAEAINGLCGGQALDLAFENKP-  160 (322)
T ss_pred             HHHHHHHCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-
T ss_conf             9998651148864378975666736237999989999999999987585227999999999999977289998667889-


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCC
Q ss_conf             10357898998643355554432100011222210157999997311168988764112367000384012345421365
Q gi|254780755|r  156 VTEEDYLHVIKSKTAVLFSAALEVSSLIAGVQNSVRQALKSYGMNLGIAFQLVDDVLDYRGEVNEMGKNIGEDFRNGKPT  235 (322)
Q Consensus       156 ~s~~~y~~ii~~KTa~Lf~~~~~~ga~lag~~~~~~~~l~~fG~~lG~afQI~DD~ld~~g~~~~~GK~~g~Dl~egk~T  235 (322)
T Consensus       161 ~t~e~y~~~i~~KTa~L~~~a~~~ga~la~~~~~~~~~l~~~g~~lGlaFQi~DDiLD~~~d~~~lGK~~g~Dl~~gK~T  240 (322)
T COG0142         161 VTLEEYLRVIELKTAALFAAAAVLGAILAGADEELLEALEDYGRNLGLAFQIQDDILDITGDEEELGKPVGSDLKEGKPT  240 (322)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCHHHHHHCCCC
T ss_conf             99999999999989999999999999981998999999999999877888867747750587276289743568818852


Q ss_pred             CCCCHHHHCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf             32100110143110001343203689998999999999997496999999999999999998420899989999999999
Q gi|254780755|r  236 LPVILAFQRGTKREKNFWKSTINDGKISVENLKKAFIIMRENRALVDTEYRAYSYGQKAKDSLRCLPDSSWKKSLMEVVD  315 (322)
Q Consensus       236 lpii~al~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~ll~~~gai~~~~~~~~~~~~~A~~~L~~lp~~~~k~~L~~L~~  315 (322)
T Consensus       241 ~p~l~~l~~~~~~~~-~~~~~~~~~~----~~~~~~~~~~~~g~~~~~~~~a~~~~~~a~~~L~~l~~~~~~~~L~~la~  315 (322)
T COG0142         241 LPVLLALEKANEDQK-LLRILLEGGG----EVEEALELLRKSGAIEYAKNLAKTYVEKAKEALEKLPDSEAKEALLELAD  315 (322)
T ss_pred             HHHHHHHHHCCHHHH-HHHHHHHHHH----HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf             999999984756567-8988751014----69999999997053899999999999999999884798368999999999


Q ss_pred             HHHCCCC
Q ss_conf             9960379
Q gi|254780755|r  316 FCLQRLN  322 (322)
Q Consensus       316 ~ii~R~~  322 (322)
T Consensus       316 ~~~~R~~  322 (322)
T COG0142         316 FIIKRKY  322 (322)
T ss_pred             HHHHCCC
T ss_conf             9986129