HHsearch alignment for GI: 254780755 and conserved domain: pfam00348
>pfam00348 polyprenyl_synt Polyprenyl synthetase.
Probab=100.00 E-value=0 Score=461.37 Aligned_cols=247 Identities=34% Similarity=0.603 Sum_probs=219.2
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCCHHHCCCHHHHHH
Q ss_conf 99999999967982279999999999708985786666557899999998752110112200110121010011023431
Q gi|254780755|r 30 IPDVVKYLIFSGGKRLRPMLTLATALMLEYRGDNHVLLACAIEFIHTATLLHDDVVDDSALRRGKVAARLVWGNQTSVLV 109 (322)
Q Consensus 30 l~~~~~~~~~~gGKr~Rp~l~~l~~~~~~~~~~~~~~~a~~iEliH~asLiHDDI~D~~~~RRg~~t~~~~~G~~~Ail~ 109 (322)
T Consensus 1 l~~am~y~~~~gGKrlRp~L~l~~~~~~g~~~~~~~~~A~avEllH~aSLIHDDI~D~s~~RRG~pt~h~~~G~~~Ail~ 80 (260)
T pfam00348 1 LLAAMLYYLLAGGKRIRPLLVVLAARALGVEPETLLYLACAIEMIHTASLVHDDLMDNSDLRRGKPTCHKKFGEAGAILA 80 (260)
T ss_pred CHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCHHHHHHH
T ss_conf 97889988718934089999999999829988899999999999999999953324699877999860223111789997
Q ss_pred HHHHHHHHHHHHHCCCCC----CCCHH---HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 245788887642102431----10001---23456777777545655421322103578989986433555544321000
Q gi|254780755|r 110 GDFLLSQAFCMVIETKSQ----EALEA---LSLVACTLAEGELRQLSLSKNLDVTEEDYLHVIKSKTAVLFSAALEVSSL 182 (322)
Q Consensus 110 GD~l~~~a~~~l~~~~~~----~~~~~---~~~~~~~l~~Gq~~d~~~~~~~~~s~~~y~~ii~~KTa~Lf~~~~~~ga~ 182 (322)
T Consensus 81 GD~L~~~a~~~l~~~~~~~~~~~~~~i~~~~~~~~~~g~~gQ~~d~~~~-~~~~s~~~y~~~~~~KTa~Lf~~~~~~gai 159 (260)
T pfam00348 81 GDALLSRAFQLLALLGHVRPEPKYILISELANAVGAQGEVGQLMDLETE-GKDITLEEYLRIVSYKTAALFYASVQLGAI 159 (260)
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 5899999999998657998399999999999999999999999987567-889999999999999759999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHCCCCCCCHHHHHHCCCCCC
Q ss_conf 11222210157999997311168988764112367000384012345421365321001101431100013432036899
Q gi|254780755|r 183 IAGVQNSVRQALKSYGMNLGIAFQLVDDVLDYRGEVNEMGKNIGEDFRNGKPTLPVILAFQRGTKREKNFWKSTINDGKI 262 (322)
Q Consensus 183 lag~~~~~~~~l~~fG~~lG~afQI~DD~ld~~g~~~~~GK~~g~Dl~egk~Tlpii~al~~~~~~~~~~l~~~~~~~~~ 262 (322)
T Consensus 160 lag~~~~~~~~l~~~g~~lGiaFQi~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~i~ale~a~~~~r~~l~~~~~~~-- 237 (260)
T pfam00348 160 VAGADEEDEKDLYDFGRDLGLAFQIQDDILDLTGDTEELGKPVGTDLQEGKSTLPVLLALEGAREEQRKLLREAYEQK-- 237 (260)
T ss_pred HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHCCC--
T ss_conf 819999999999999987368999899764144898770999554675690369999999869899999999998387--
Q ss_pred CHHHHHHHHHHHHHCCH
Q ss_conf 98999999999997496
Q gi|254780755|r 263 SVENLKKAFIIMRENRA 279 (322)
Q Consensus 263 ~~~~~~~i~~ll~~~ga 279 (322)
T Consensus 238 ~~~~~~~~~~~~~~~~~ 254 (260)
T pfam00348 238 LSEAAAQGVALTKALEA 254 (260)
T ss_pred CHHHHHHHHHHHHHHHH
T ss_conf 78999999999999888