HHsearch results for GI: 254780755 and protein with PDBid: 1uby_A
>1uby_A FPS, farnesyl diphosphate synthase; transferase, isoprene biosynthesis, cholesterol biosynthesis; HET: DMA; 2.40A {Gallus gallus} SCOP: a.128.1.1 PDB: 1ubw_A* 1ubv_A* 1ubx_A* 1fps_A
Probab=100.00 E-value=0 Score=477.48 Aligned_cols=288 Identities=20% Similarity=0.244 Sum_probs=254.9
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHH-------HHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCCHHHCC
Q ss_conf 999999999679822799999999997089857-------8666655789999999875211011220011012101001
Q gi|254780755|r 30 IPDVVKYLIFSGGKRLRPMLTLATALMLEYRGD-------NHVLLACAIEFIHTATLLHDDVVDDSALRRGKVAARLVWG 102 (322)
Q Consensus 30 l~~~~~~~~~~gGKr~Rp~l~~l~~~~~~~~~~-------~~~~~a~~iEliH~asLiHDDI~D~~~~RRg~~t~~~~~G 102 (322)
+.++..|.+ .||||+||++|++++++++++.. .++++|+++|+||+||||||||||+|++|||+||+|++||
T Consensus 59 l~~~l~y~~-~GGKrlRp~l~~~~~~~~~~~~~~~~~~~~~a~~~a~aiEliH~asLvhDDI~D~s~~RRG~pt~h~~~g 137 (367)
T 1uby_A 59 LKEVLQYNA-PGGKCNRGLTVVAAYRELSGPGQKDAESLRCALAVGWCIELFQAASLVADDIMDQSLTRRGQLCWYKKEG 137 (367)
T ss_dssp HHHHHHHHS-SSSCCHHHHHHHHHHHHHCCGGGCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEETTEECGGGSTT
T ss_pred HHHHHHCCC-CCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCH
T ss_conf 999984656-8863266999999999857997666678999999999999999999998264407887789833101120
Q ss_pred CHHHHHHHHHHHHHHHHHH-HCCC-----CCCCCHHHHHHHHHHHHHHHHHHHHHCCC-----CCCHHHHHHHHHHHHHH
Q ss_conf 1023431245788887642-1024-----31100012345677777754565542132-----21035789899864335
Q gi|254780755|r 103 NQTSVLVGDFLLSQAFCMV-IETK-----SQEALEALSLVACTLAEGELRQLSLSKNL-----DVTEEDYLHVIKSKTAV 171 (322)
Q Consensus 103 ~~~Ail~GD~l~~~a~~~l-~~~~-----~~~~~~~~~~~~~~l~~Gq~~d~~~~~~~-----~~s~~~y~~ii~~KTa~ 171 (322)
++.||+.||+|++.++..+ .... ..++++.+++++.++++||++|+.+.... ..++++|++|+++|||+
T Consensus 138 ~~~ail~gd~ll~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~lDl~~~~~~~~~~~~~t~~~y~~ii~~KTa~ 217 (367)
T 1uby_A 138 VGLDAINDSFLLESSVYRVLKKYCRQRPYYVHLLELFLQTAYQTELGQMLDLITAPVSKVDLSHFSEERYKAIVKYKTAF 217 (367)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSCCCTTCCHHHHHHHHHHHTHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 43888711348999999999872546558999999999988888999999997312444454327899999999998888
Q ss_pred H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHCCCCCC
Q ss_conf 5--55443210001122221015799999731116898876411236700038401234542136532100110143110
Q gi|254780755|r 172 L--FSAALEVSSLIAGVQNSVRQALKSYGMNLGIAFQLVDDVLDYRGEVNEMGKNIGEDFRNGKPTLPVILAFQRGTKRE 249 (322)
Q Consensus 172 L--f~~~~~~ga~lag~~~~~~~~l~~fG~~lG~afQI~DD~ld~~g~~~~~GK~~g~Dl~egk~Tlpii~al~~~~~~~ 249 (322)
| |..+|..++++++.+++..+.+..||.++|+||||+||++|++|+++.+|| +|+||++||+|||++++++.+++++
T Consensus 218 ls~~~~~~~~~~~~g~~~~~~~~~l~~~g~~lG~aFQI~DD~lD~~gd~~~~gk-~g~Di~egK~Tlpvi~al~~~~~~~ 296 (367)
T 1uby_A 218 YSFYLPVAAAMYMVGIDSKEEHENAKAILLEMGEYFQIQDDYLDCFGDPALTGA-VGTDIQDNKCSWLVVQCLQRVTPEQ 296 (367)
T ss_dssp HHTHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSC-CCCCSSSCCCCHHHHHHHHHCCHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCC-CCCHHHCCCHHHHHHHHHHHCCHHH
T ss_conf 888999998733222220377877765530005767731467660289666198-5537657952599999998499999
Q ss_pred CHHHHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 001343203689998999999999997496999999999999999998420899989999999999996037
Q gi|254780755|r 250 KNFWKSTINDGKISVENLKKAFIIMRENRALVDTEYRAYSYGQKAKDSLRCLPDSSWKKSLMEVVDFCLQRL 321 (322)
Q Consensus 250 ~~~l~~~~~~~~~~~~~~~~i~~ll~~~gai~~~~~~~~~~~~~A~~~L~~lp~~~~k~~L~~L~~~ii~R~ 321 (322)
++.+..+++++ +++++++++++++++|+.+++++.++.+.+++.+.++.+|++..|+.|..|++++++|.
T Consensus 297 r~~l~~~~~~~--~~~~i~~v~~li~~~g~~~~~~~~~~~~~~~a~~~i~~~~~~~~k~~L~~L~~~i~~R~ 366 (367)
T 1uby_A 297 RQLLEDNYGRK--EPEKVAKVKELYEAVGMRAAFQQYEESSYRRLQELIEKHSNRLPKEIFLGLAQKIYKRQ 366 (367)
T ss_dssp HHHHHHHTTCC--CHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHCSSSCTHHHHHHHHHHCCCC
T ss_pred HHHHHHHHCCC--CHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 99999986799--99999999999998795999999999999999999870798189999999999997587