HHsearch results for GI: 254780755 and protein with PDBid: 1wy0_A
>1wy0_A Geranylgeranyl pyrophosphate synthetase; structural genomics, riken structural genomics/proteomics initiative, RSGI, transferase; 2.20A {Pyrococcus horikoshii OT3}
Probab=100.00 E-value=0 Score=539.12 Aligned_cols=320 Identities=29% Similarity=0.439 Sum_probs=300.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCH-HHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 479999999999999999986077875-8999999999679822799999999997089857866665578999999987
Q gi|254780755|r 2 KMLEDLTLKDMEKVNFLILKRICSDVE-MIPDVVKYLIFSGGKRLRPMLTLATALMLEYRGDNHVLLACAIEFIHTATLL 80 (322)
Q Consensus 2 ~~l~~~~~~~l~~v~~~i~~~~~~~~~-~l~~~~~~~~~~gGKr~Rp~l~~l~~~~~~~~~~~~~~~a~~iEliH~asLi 80 (322)
..+.+.+.+++..|+..+.+.+....| .+.++++|++.+||||+||.+|+++++++|++++.++++|+++||+|+||||
T Consensus 5 ~~~~~~~~~~~~~v~~~l~~~~~~~~~~~l~~~~~~~~~~gGKr~Rp~l~l~~~~~~g~~~~~~~~~A~aiEliH~asLI 84 (342)
T 1wy0_A 5 EELFARIKEKAKLIDEKIFELIPEKDPRVLYEAARHYPLAGGKRVRPFVVLTSTEAVGGDPLRAIYPAVAIELIHNYSLV 84 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCSCSSHHHHHHHHHTGGGTCCCHHHHHHHHHTTTTTSCGGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999998647678289999999886467454899999999998399868899999999999999998
Q ss_pred HHHHHCHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCC-----CCHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 521101122001101210100110234312457888876421024311-----000123456777777545655421322
Q gi|254780755|r 81 HDDVVDDSALRRGKVAARLVWGNQTSVLVGDFLLSQAFCMVIETKSQE-----ALEALSLVACTLAEGELRQLSLSKNLD 155 (322)
Q Consensus 81 HDDI~D~~~~RRg~~t~~~~~G~~~Ail~GD~l~~~a~~~l~~~~~~~-----~~~~~~~~~~~l~~Gq~~d~~~~~~~~ 155 (322)
||||+|+|..|||+||+|.+||+..||++||+|++.++.++++.+++. +...++.+..++++||.+|+.+..+..
T Consensus 85 HDDi~D~~~~RRg~~t~~~~~g~~~ail~Gd~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~Gq~~dl~~~~~~~ 164 (342)
T 1wy0_A 85 HDDIMDMDETRRGKPTVHRIWGVNMAILAGDLLFSKAFEAVARAEIPPEKKARVLEVIVKASNELCEGQARDLEFEKKST 164 (342)
T ss_dssp HHHHHHTCCCSTTSCCHHHHHCHHHHHHHHHHHHHHHHHHHHTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSC
T ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 58877689876899885310057899888999999999999860477466678899886788898762656654014689
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCC
Q ss_conf 10357898998643355554432100011222210157999997311168988764112367000384012345421365
Q gi|254780755|r 156 VTEEDYLHVIKSKTAVLFSAALEVSSLIAGVQNSVRQALKSYGMNLGIAFQLVDDVLDYRGEVNEMGKNIGEDFRNGKPT 235 (322)
Q Consensus 156 ~s~~~y~~ii~~KTa~Lf~~~~~~ga~lag~~~~~~~~l~~fG~~lG~afQI~DD~ld~~g~~~~~GK~~g~Dl~egk~T 235 (322)
.++++|++|+++|||+||++||.+|++++|++++..+.+++||.++|+||||+||++|++|+++.+|||+|+||++||+|
T Consensus 165 ~~~~~y~~ii~~KTa~lf~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~lD~~~~~~~~GK~~g~Dl~~gk~T 244 (342)
T 1wy0_A 165 VTIEEYMEMISGKTGALFEASAKVGGIIGTDNEEYIKALSSWGRNVGIAFQIWDDVLDLIADEKKLGKPVGSDIRKGKKT 244 (342)
T ss_dssp CCHHHHHHHHHHHTHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHTSCSCHHHHHTCCC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCCCH
T ss_conf 99999999999999999999999999983999999999999999999999985564102388776099756410027630
Q ss_pred CCCCHHHHCCCCCCCHHHHHHCCCCC-----------CCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 32100110143110001343203689-----------9989999999999974969999999999999999984208999
Q gi|254780755|r 236 LPVILAFQRGTKREKNFWKSTINDGK-----------ISVENLKKAFIIMRENRALVDTEYRAYSYGQKAKDSLRCLPDS 304 (322)
Q Consensus 236 lpii~al~~~~~~~~~~l~~~~~~~~-----------~~~~~~~~i~~ll~~~gai~~~~~~~~~~~~~A~~~L~~lp~~ 304 (322)
||+++|++++++.+++.+.+++++.. .+.+++.+++++++++|++++|+++++.|.++|++.|+.||++
T Consensus 245 lp~i~al~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ga~~~a~~~a~~~~~~A~~~L~~lp~~ 324 (342)
T 1wy0_A 245 LIVAHFFENADEKDKQRFLKIFGKYAGDVKGRGIIEEDIKSDVMEAIDLLKKYGSIDYAAEIAKDMIKKANEALRILPKS 324 (342)
T ss_dssp HHHHHHHHHCCHHHHHHHHHTSCC-------------CHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHTTGGGSCCC
T ss_pred HHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 99999998599999999999873533116654323311589999999999986979999999999999999998669997
Q ss_pred HHHHHHHHHHHHHHCCC
Q ss_conf 89999999999996037
Q gi|254780755|r 305 SWKKSLMEVVDFCLQRL 321 (322)
Q Consensus 305 ~~k~~L~~L~~~ii~R~ 321 (322)
+.|+.|..|++|+++|.
T Consensus 325 ~~k~~L~~l~~~i~~R~ 341 (342)
T 1wy0_A 325 KARMDLELLAKFIVERE 341 (342)
T ss_dssp HHHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHHHHHCC
T ss_conf 89999999999998688