HHsearch results for GI: 254780755 and protein with PDBid: 1yhl_A
>1yhl_A Farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, bisphosphonate, dimethyl allyl pyrophosphate sulfate, FPPS, transferase; HET: DMA RIS; 1.95A {Trypanosoma cruzi} PDB: 1yhk_A* 1yhm_A* 3iba_A* 3ick_A* 3icm_A* 3icn_A* 3icz_A* 3id0_A*
Probab=100.00 E-value=0 Score=466.05 Aligned_cols=288 Identities=18% Similarity=0.226 Sum_probs=251.5
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCH-----------HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCCH
Q ss_conf 99999999967982279999999999708985-----------7866665578999999987521101122001101210
Q gi|254780755|r 30 IPDVVKYLIFSGGKRLRPMLTLATALMLEYRG-----------DNHVLLACAIEFIHTATLLHDDVVDDSALRRGKVAAR 98 (322)
Q Consensus 30 l~~~~~~~~~~gGKr~Rp~l~~l~~~~~~~~~-----------~~~~~~a~~iEliH~asLiHDDI~D~~~~RRg~~t~~ 98 (322)
+.+...|.+ +||||+||++++++++++++.. ..+..+|++||++|+||||||||||+|++|||+||+|
T Consensus 36 ~~~~~~y~~-~GGKr~Rp~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~iEllH~asLihDDI~D~s~~RRG~pt~h 114 (362)
T 1yhl_A 36 LRIMMDTTC-LGGKYFRGMTVVNVAEGFLAVTQHDEATKERILHDACVGGWMIEFLQAHYLVEDDIMDGSVMRRGKPCWY 114 (362)
T ss_dssp HHHHHHHHH-SSSCCHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEETTEECGG
T ss_pred HHHHHHCCC-CCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCH
T ss_conf 999996457-8853102799999999963643455432567789999999999999999999732267998889998742
Q ss_pred HHCCCHHHHHHHHHHHHHHHHHHHCCC-------CCCCCHHHHHHHHHHHHHHHHHHHHHCC----------------CC
Q ss_conf 100110234312457888876421024-------3110001234567777775456554213----------------22
Q gi|254780755|r 99 LVWGNQTSVLVGDFLLSQAFCMVIETK-------SQEALEALSLVACTLAEGELRQLSLSKN----------------LD 155 (322)
Q Consensus 99 ~~~G~~~Ail~GD~l~~~a~~~l~~~~-------~~~~~~~~~~~~~~l~~Gq~~d~~~~~~----------------~~ 155 (322)
++||++.||++||+|++.++..+.... ..++++.++++...++.||++|+.+... .+
T Consensus 115 ~~~G~~~ai~~gD~l~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~~d~~~~~~~~~~d~e~~~~~~~~~~~ 194 (362)
T 1yhl_A 115 RFPGVTTQCAINDGIILKSWTQIMAWHYFADRPFLKDLLCLFQKVDYATAVGQMYDVTSMCDSNKLDPEVAQPMTTDFAE 194 (362)
T ss_dssp GSTTTHHHHHHHHHHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHHHHHHHTTTBCGGGCCTTSCCCBCSSCTT
T ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCHHHHHHHHCCCCCHH
T ss_conf 30681899996639999999999987524684558999999999999999998704124404631118988630256200
Q ss_pred CCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHCC
Q ss_conf 10357898998643355-55443210001122221-01579999973111689887641123670003840123454213
Q gi|254780755|r 156 VTEEDYLHVIKSKTAVL-FSAALEVSSLIAGVQNS-VRQALKSYGMNLGIAFQLVDDVLDYRGEVNEMGKNIGEDFRNGK 233 (322)
Q Consensus 156 ~s~~~y~~ii~~KTa~L-f~~~~~~ga~lag~~~~-~~~~l~~fG~~lG~afQI~DD~ld~~g~~~~~GK~~g~Dl~egk 233 (322)
+|+++|++|+.+|||+| |.+|+.+|++++|.+++ ..+.++.||.++|+||||+||++|++|+++.+|| +|+||++||
T Consensus 195 ~t~~~Y~~~i~~KTa~L~~~~~~~~g~~~~g~~~~~~~~~l~~~g~~lGiaFQI~DDilD~~~d~~~~GK-~g~Dl~egK 273 (362)
T 1yhl_A 195 FTPAIYKRIVKYKTTFYTYLLPLVMGLFVSEAAASVEMNLVERVAHLIGEYFQVQDDVMDCFTPPEQLGK-VGTDIEDAK 273 (362)
T ss_dssp CSHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHSS-CCCTTTTTC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCC-CHHHHHCCC
T ss_conf 5899999999998746789999987787713631889988876787999999999998870079788687-446787697
Q ss_pred CCCCCCHHHHCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCC--CCHHHHHHH
Q ss_conf 653210011014311000134320368999899999999999749699999999999999999842089--998999999
Q gi|254780755|r 234 PTLPVILAFQRGTKREKNFWKSTINDGKISVENLKKAFIIMRENRALVDTEYRAYSYGQKAKDSLRCLP--DSSWKKSLM 311 (322)
Q Consensus 234 ~Tlpii~al~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~ll~~~gai~~~~~~~~~~~~~A~~~L~~lp--~~~~k~~L~ 311 (322)
+|||+++|++.+++++++.+.++++++ ++++++.+.+++.++|+.+++...++++.+++.+.++.++ ++..++.|.
T Consensus 274 ~Tlp~i~al~~~~~~~~~~l~~~~~~~--d~~~v~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~ 351 (362)
T 1yhl_A 274 CSWLAVTFLGKANAAQVAEFKANYGDK--DPAKVAVVKRLYSEANLQADFAAYEAEVVREVESLIEQLKVKSPTFAESVA 351 (362)
T ss_dssp CCHHHHHHHTTCCHHHHHHHHHHTTCC--CHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred CHHHHHHHHHHCCHHHHHHHHHHHCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_conf 359999999809999999999986899--989999999999986979999999999999999999867578768999999
Q ss_pred HHHHHHHCCC
Q ss_conf 9999996037
Q gi|254780755|r 312 EVVDFCLQRL 321 (322)
Q Consensus 312 ~L~~~ii~R~ 321 (322)
.+++++.+|.
T Consensus 352 ~~~~~i~kR~ 361 (362)
T 1yhl_A 352 VVWEKTHKRK 361 (362)
T ss_dssp HHHHHHHTCC
T ss_pred HHHHHHHCCC
T ss_conf 9999997488