HHsearch results for GI: 254780755 and protein with PDBid: 2qis_A
>2qis_A Farnesyl pyrophosphate synthetase; trans-prenyltransferase, structural genomics, structural genomics consortium, SGC; HET: RIS; 1.80A {Homo sapiens} PDB: 1yv5_A* 1yq7_A* 2opm_A* 2opn_A* 3cp6_A* 2rah_A* 2vf6_A* 1zw5_A* 3b7l_A* 3n45_F* 2f89_F* 2f7m_F* 2f8z_F* 2f8c_F* 2f92_F* 2f9k_F* 3n1v_F* 3n1w_F* 3n3l_F* 2f94_F* ...
Probab=100.00 E-value=0 Score=479.02 Aligned_cols=312 Identities=18% Similarity=0.191 Sum_probs=272.1
Q ss_pred HHHHHHHHHHHHHHHHHCCC---CCHH-------HHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCH-------HHHHHHH
Q ss_conf 99999999999999986077---8758-------99999999967982279999999999708985-------7866665
Q gi|254780755|r 6 DLTLKDMEKVNFLILKRICS---DVEM-------IPDVVKYLIFSGGKRLRPMLTLATALMLEYRG-------DNHVLLA 68 (322)
Q Consensus 6 ~~~~~~l~~v~~~i~~~~~~---~~~~-------l~~~~~~~~~~gGKr~Rp~l~~l~~~~~~~~~-------~~~~~~a 68 (322)
.....++..+-+.|.+.+.. .+|. +.+++.|-+ .||||+||++|++++++++++. +.++.+|
T Consensus 32 ~~~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~Y~~-~GGKr~R~llv~~~~~~l~~~~~~~~e~~~~a~~~a 110 (374)
T 2qis_A 32 AQEKQDFVQHFSQIVRVLTEDEMGHPEIGDAIARLKEVLEYNA-IGGKYNRGLTVVVAFRELVEPRKQDADSLQRAWTVG 110 (374)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTC--CGGGHHHHHHHHHHHHHHS-SSSCCHHHHHHHHHHHHHSCGGGCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCC-CCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
T ss_conf 9999999999999999987641269870579999999985757-883107599999999986486568867899999999
Q ss_pred HHHHHHHHHHHHHHHHHCHHHHHHHCCCCHHHCCCH-HHHHHHHHHHHHHHHHHHCCC-----CCCCCHHHHHHHHHHHH
Q ss_conf 578999999987521101122001101210100110-234312457888876421024-----31100012345677777
Q gi|254780755|r 69 CAIEFIHTATLLHDDVVDDSALRRGKVAARLVWGNQ-TSVLVGDFLLSQAFCMVIETK-----SQEALEALSLVACTLAE 142 (322)
Q Consensus 69 ~~iEliH~asLiHDDI~D~~~~RRg~~t~~~~~G~~-~Ail~GD~l~~~a~~~l~~~~-----~~~~~~~~~~~~~~l~~ 142 (322)
+|||+||+||||||||||+|++|||+||+|++||++ .||+.||+|++.++.++.... ..++++.+++++..+++
T Consensus 111 ~~iEllH~asLvhDDImD~s~~RRG~pt~~~~~G~~~~Ai~~gd~L~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~~ 190 (374)
T 2qis_A 111 WCVELLQAFFLVADDIMDSSLTRRGQICWYQKPGVGLDAINDANLLEACIYRLLKLYCREQPYYLNLIELFLQSSYQTEI 190 (374)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEETTEECGGGSTTTGGGHHHHHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999986763699888998353457885388995199999999999998423563799999999999999987
Q ss_pred HHHHHHHHHCCCC-----CCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCCHHHHHHHHHCCC
Q ss_conf 7545655421322-----10357898998643355-55443210001122221-01579999973111689887641123
Q gi|254780755|r 143 GELRQLSLSKNLD-----VTEEDYLHVIKSKTAVL-FSAALEVSSLIAGVQNS-VRQALKSYGMNLGIAFQLVDDVLDYR 215 (322)
Q Consensus 143 Gq~~d~~~~~~~~-----~s~~~y~~ii~~KTa~L-f~~~~~~ga~lag~~~~-~~~~l~~fG~~lG~afQI~DD~ld~~ 215 (322)
||++|+.+..+.. .++++|++|+.+|||+| |.+|+.+|++++|.+.+ ..+.+.+||.++|+||||+||+||++
T Consensus 191 GQ~lDl~~~~~~~~d~~~~t~~~Y~~ii~~KTa~l~~~~~~~~~~~~ag~~~~~~~~~l~~~g~~lG~aFQI~DD~LD~~ 270 (374)
T 2qis_A 191 GQTLDLLTAPQGNVDLVRFTEKRYKSIVKYKSAFYSFYLPIAAAMYMAGIDGEKEHANAKKILLEMGEFFQIQDDYLDLF 270 (374)
T ss_dssp HHHHHHHHSCTTCCCGGGCCHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHC
T ss_conf 59999883125666643167999999999986688999999988640110188899888789999999895123555401
Q ss_pred CCCCCCCCHHHHHHHHCCCCCCCCHHHHCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Q ss_conf 67000384012345421365321001101431100013432036899989999999999974969999999999999999
Q gi|254780755|r 216 GEVNEMGKNIGEDFRNGKPTLPVILAFQRGTKREKNFWKSTINDGKISVENLKKAFIIMRENRALVDTEYRAYSYGQKAK 295 (322)
Q Consensus 216 g~~~~~GK~~g~Dl~egk~Tlpii~al~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~ll~~~gai~~~~~~~~~~~~~A~ 295 (322)
|+++.+|| +|+||++||+|||+++|++++++++++.|.++++++ +++.++++.++++++|+.+++.+.++.+.+++.
T Consensus 271 gd~~~~GK-~g~Di~egK~Tlpvi~ale~a~~e~r~~L~~~~g~~--d~e~v~~vk~l~~~~g~~~~~~~~~~~~~~~a~ 347 (374)
T 2qis_A 271 GDPSVTGK-IGTDIQDNKCSWLVVQCLQRATPEQYQILKENYGQK--EAEKVARVKALYEELDLPAVFLQYEEDSYSHIM 347 (374)
T ss_dssp SCHHHHCS-CCCTTTTTCCCHHHHHHHHHCCHHHHHHHHHHTTCC--CHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHCC-CCCHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 89566488-665776694119999999829999999999986799--989999999999987889999999999999999
Q ss_pred HHHHCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 98420899989999999999996037
Q gi|254780755|r 296 DSLRCLPDSSWKKSLMEVVDFCLQRL 321 (322)
Q Consensus 296 ~~L~~lp~~~~k~~L~~L~~~ii~R~ 321 (322)
..|+.+|.+..++.|..|++++++|.
T Consensus 348 ~~i~~l~~~~~~~~L~~l~~~i~~R~ 373 (374)
T 2qis_A 348 ALIEQYAAPLPPAVFLGLARKIYKRR 373 (374)
T ss_dssp HHHHHHCTTSCHHHHHHHHHHHC---
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 99981899267999999999997088