HHsearch results for GI: 254780755 and protein with PDBid: 3dyh_A
>3dyh_A Farnesyl pyrophosphate synthase; protein-bisphosphonate complex, isoprene biosynthesis, transferase; HET: 721; 1.94A {Trypanosoma brucei} PDB: 2ewg_A* 2i19_A* 2p1c_A* 3dyf_A* 3dyg_A* 2ogd_A* 3efq_A* 3egt_A*
Probab=100.00 E-value=0 Score=466.44 Aligned_cols=288 Identities=20% Similarity=0.242 Sum_probs=252.7
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCH-----------------HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
Q ss_conf 99999999967982279999999999708985-----------------7866665578999999987521101122001
Q gi|254780755|r 30 IPDVVKYLIFSGGKRLRPMLTLATALMLEYRG-----------------DNHVLLACAIEFIHTATLLHDDVVDDSALRR 92 (322)
Q Consensus 30 l~~~~~~~~~~gGKr~Rp~l~~l~~~~~~~~~-----------------~~~~~~a~~iEliH~asLiHDDI~D~~~~RR 92 (322)
+.+...|.+ .||||+||++|+++++++.+.. ..+..+|+++|+||+||||||||||+|++||
T Consensus 58 ~~~~~~y~~-~GGKr~Rp~lv~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~la~~iEllH~asLihDDImD~s~~RR 136 (390)
T 3dyh_A 58 LRKMMDTTC-LGGKYNRGLTVIDVAESLLSLSPNNNGEEDDGARRKRVLHDACVCGWMIEFLQAHYLVEDDIMDNSVTRR 136 (390)
T ss_dssp HHHHHHHHH-SSSCCHHHHHHHHHHHHTSCC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEET
T ss_pred HHHHHHCCC-CCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 999996546-8854202399999999971668664310000001245689999999999999999998710357998879
Q ss_pred HCCCCHHHCCCHHHHHHHHHHHHHHHHHHHCCC-------CCCCCHHHHHHHHHHHHHHHHHHHHHCC------------
Q ss_conf 101210100110234312457888876421024-------3110001234567777775456554213------------
Q gi|254780755|r 93 GKVAARLVWGNQTSVLVGDFLLSQAFCMVIETK-------SQEALEALSLVACTLAEGELRQLSLSKN------------ 153 (322)
Q Consensus 93 g~~t~~~~~G~~~Ail~GD~l~~~a~~~l~~~~-------~~~~~~~~~~~~~~l~~Gq~~d~~~~~~------------ 153 (322)
|+||+|++||++.||++||++++.++..+.... ..++++.++++...++.||++|+.+..+
T Consensus 137 G~pt~h~~~g~~~ai~~gD~ll~~a~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~GQ~ldl~~~~~~~~~~~~~~~~~ 216 (390)
T 3dyh_A 137 GKPCWYRHPDVTVQCAINDGLLLKSWTHMMAMHFFADRPFLQDLLCRFNRVDYTTAVGQLYDVTSMFDSNKLDPDVSQPT 216 (390)
T ss_dssp TEECGGGSTTCCHHHHHHHHHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHHHHHHHTTTSCGGGCCTTSCCCC
T ss_pred CCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHC
T ss_conf 99750313674888998229999999999985236671569999999999999998888864430102412347776302
Q ss_pred ----CCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHH
Q ss_conf ----2210357898998643355-554432100011222-2101579999973111689887641123670003840123
Q gi|254780755|r 154 ----LDVTEEDYLHVIKSKTAVL-FSAALEVSSLIAGVQ-NSVRQALKSYGMNLGIAFQLVDDVLDYRGEVNEMGKNIGE 227 (322)
Q Consensus 154 ----~~~s~~~y~~ii~~KTa~L-f~~~~~~ga~lag~~-~~~~~~l~~fG~~lG~afQI~DD~ld~~g~~~~~GK~~g~ 227 (322)
.++|+++|++|+++|||+| |.+|+.+|++++|.. ++..+.+.+||.++|+||||+||++|++|+++.+|| +|+
T Consensus 217 ~~~~~~~t~~~Y~~ii~~KTa~l~~~~~~~~g~~lag~~~~~~~~~l~~~g~~lG~aFQI~DD~LD~~gd~~~~GK-~g~ 295 (390)
T 3dyh_A 217 TTDFAEFTLSNYKRIVKYKTAYYTYLLPLVMGLIVSEALPTVDMGVTEELAMLMGEYFQVQDDVMDCFTPPERLGK-VGT 295 (390)
T ss_dssp CSSCTTCCHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHSS-CCC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCC-CHH
T ss_conf 2343217999999999977669999999999897705117889988988899999999999998870089678697-456
Q ss_pred HHHHCCCCCCCCHHHHCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCC--CH
Q ss_conf 4542136532100110143110001343203689998999999999997496999999999999999998420899--98
Q gi|254780755|r 228 DFRNGKPTLPVILAFQRGTKREKNFWKSTINDGKISVENLKKAFIIMRENRALVDTEYRAYSYGQKAKDSLRCLPD--SS 305 (322)
Q Consensus 228 Dl~egk~Tlpii~al~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~ll~~~gai~~~~~~~~~~~~~A~~~L~~lp~--~~ 305 (322)
||++||+|||+++|++.+++++++.+..++++. +++.++++.+++.++++.+++.+.++.+.+.+.+.++.+|. ..
T Consensus 296 Dl~egK~Tlp~i~al~~~~~~~r~~l~~~~~~~--d~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~ 373 (390)
T 3dyh_A 296 DIQDAKCSWLAVTFLAKASSAQVAEFKANYGSG--DSEKVATVRRLYEEADLQGDYVAYEAAVAEQVKELIEKLRLCSPG 373 (390)
T ss_dssp TTTTTCCCHHHHHHHHHCCHHHHHHHHTTTTCC--CHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHCCCCHHHHHHHHHHCCHHHHHHHHHHHCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHH
T ss_conf 787698339999999859999999999986799--879999999999985988999999999999999999847347857
Q ss_pred HHHHHHHHHHHHHCCC
Q ss_conf 9999999999996037
Q gi|254780755|r 306 WKKSLMEVVDFCLQRL 321 (322)
Q Consensus 306 ~k~~L~~L~~~ii~R~ 321 (322)
.++.|..+++++.+|.
T Consensus 374 ~~~~l~~ll~~i~kR~ 389 (390)
T 3dyh_A 374 FAASVETLWGKTYKRQ 389 (390)
T ss_dssp HHHHHHHHHHTTTTCC
T ss_pred HHHHHHHHHHHHHCCC
T ss_conf 9999999999997689