HHsearch results for GI: 254780755 and protein with PDBid: 3ipi_A
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei}
Probab=100.00 E-value=0 Score=449.63 Aligned_cols=272 Identities=25% Similarity=0.408 Sum_probs=245.6
Q ss_pred HHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHH
Q ss_conf 999999999998607-7875899999999967982279999999999708985786666557899999998752110112
Q gi|254780755|r 10 KDMEKVNFLILKRIC-SDVEMIPDVVKYLIFSGGKRLRPMLTLATALMLEYRGDNHVLLACAIEFIHTATLLHDDVVDDS 88 (322)
Q Consensus 10 ~~l~~v~~~i~~~~~-~~~~~l~~~~~~~~~~gGKr~Rp~l~~l~~~~~~~~~~~~~~~a~~iEliH~asLiHDDI~D~~ 88 (322)
+++..|++.|.+.+. .++|.+.+++.|++.+||||+||.+|+++++++|++.++++++|+++|+||+||||||||||+|
T Consensus 9 ~~~~~v~~~l~~~~~~~~~~~l~~~~~~~~~~gGKrlRp~l~l~~~~~~~~~~~~~~~~AaavEliH~asLIHDDi~D~~ 88 (295)
T 3ipi_A 9 EEYRYVEAGIKESITLIEDPGLKKMVEHVCHSGGKRIRPIILLLVSEICSGSYSRSLNAALAVEMMHSASLIHDDLLDQG 88 (295)
T ss_dssp HHHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHSCCGGGHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 99999999999874214876899999998728955187999999999809998999999999999999999977757898
Q ss_pred HHHHHCCCCHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 20011012101001102343124578888764210243110001234567777775456554213221035789899864
Q gi|254780755|r 89 ALRRGKVAARLVWGNQTSVLVGDFLLSQAFCMVIETKSQEALEALSLVACTLAEGELRQLSLSKNLDVTEEDYLHVIKSK 168 (322)
Q Consensus 89 ~~RRg~~t~~~~~G~~~Ail~GD~l~~~a~~~l~~~~~~~~~~~~~~~~~~l~~Gq~~d~~~~~~~~~s~~~y~~ii~~K 168 (322)
..|||+||+|.+||++.||++||||++++|..+++.+. .....++++...+++||.+|+.+.. ...++++|++|+.+|
T Consensus 89 ~~RRG~pt~~~~~G~~~Ail~Gd~Ll~~a~~~l~~~~~-~~~~~~~~~~~~~~~gq~~d~~~~~-~~~~~~~y~~i~~~K 166 (295)
T 3ipi_A 89 LVRRNLPSAPEKFGPSGALLCGDYLIAKSIAFISPYGE-KVIQDFGKAGMDMAEGEVLDLKLED-ESFGENDYFKCIYKK 166 (295)
T ss_dssp TSCTTSCCCCCSSCHHHHHHHHHHHHHHHHHHHGGGCH-HHHHHHHHHHHHHHHHHHHHHC--------CHHHHHHHHHH
T ss_pred CCCCCCCCHHHHCCCHHHHHHCCHHHHHHHHHHCCCCC-HHHHHHHHHHHHHHCCCHHHHHCCC-CCCCHHHHHHHHHHH
T ss_conf 55445785477618299999469999999886320251-6799999999999666258874146-678899999999989
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHCCCCC
Q ss_conf 33555544321000112222101579999973111689887641123670003840123454213653210011014311
Q gi|254780755|r 169 TAVLFSAALEVSSLIAGVQNSVRQALKSYGMNLGIAFQLVDDVLDYRGEVNEMGKNIGEDFRNGKPTLPVILAFQRGTKR 248 (322)
Q Consensus 169 Ta~Lf~~~~~~ga~lag~~~~~~~~l~~fG~~lG~afQI~DD~ld~~g~~~~~GK~~g~Dl~egk~Tlpii~al~~~~~~ 248 (322)
||+||++||.+|++++|++++..+.+++||+++|+||||+||++|++| |+.|.|+++||.|+|++++++...+
T Consensus 167 T~~lf~~a~~~ga~lag~~~~~~~~l~~~g~~lG~afQI~DD~lD~~~------~~~GkDl~~gk~Tlp~i~~~~~~~~- 239 (295)
T 3ipi_A 167 TASLFAISASIGAYTGGAEEELAERFSHFGNALGTAYQIVDDILEFLE------VVEGKESKFTSETLPHIYMKSTSKE- 239 (295)
T ss_dssp THHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHC-------CCHHHHHTTTSCHH-
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC------CCCCCHHHCCCCCHHHHHHHHCCCH-
T ss_conf 999999999999997379999999999999999999999999998548------9878705148723999998760879-
Q ss_pred CCHHHHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHC
Q ss_conf 00013432036899989999999999974969999999999999999984208999899999999999960
Q gi|254780755|r 249 EKNFWKSTINDGKISVENLKKAFIIMRENRALVDTEYRAYSYGQKAKDSLRCLPDSSWKKSLMEVVDFCLQ 319 (322)
Q Consensus 249 ~~~~l~~~~~~~~~~~~~~~~i~~ll~~~gai~~~~~~~~~~~~~A~~~L~~lp~~~~k~~L~~L~~~ii~ 319 (322)
+ +++++.+.+..+.++|++.|+.||+++.++.|.+|++|+..
T Consensus 240 ----------------~-------------~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~L~~l~d~i~~ 281 (295)
T 3ipi_A 240 ----------------E-------------ALKKSIDCVKLHVAAAKETLETFRECPARDKLFQITDYITV 281 (295)
T ss_dssp ----------------H-------------HHHHHHHHHHHHHHHHHHHHTTSCCSHHHHHHHHHHHHTTG
T ss_pred ----------------H-------------HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
T ss_conf ----------------9-------------99999999999999999998637898699999999999999