HHsearch results for GI: 254780755 and protein with PDBid: 3kra_B
>3kra_B Geranyl diphosphate synthase small subunit; prenyltransferase, isoprene biosynthesis, isoprenyl pyrophosphate synthase, transferase; 1.90A {Mentha x piperita} PDB: 3krc_B* 3krf_B* 3kro_B* 3krp_B*
Probab=100.00 E-value=0 Score=389.45 Aligned_cols=237 Identities=16% Similarity=0.193 Sum_probs=201.0
Q ss_pred HHHHHHHHHHHHHHHHCCCCCHH-HHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999860778758-99999999967982279999999999708985786666557899999998752110
Q gi|254780755|r 7 LTLKDMEKVNFLILKRICSDVEM-IPDVVKYLIFSGGKRLRPMLTLATALMLEYRGDNHVLLACAIEFIHTATLLHDDVV 85 (322)
Q Consensus 7 ~~~~~l~~v~~~i~~~~~~~~~~-l~~~~~~~~~~gGKr~Rp~l~~l~~~~~~~~~~~~~~~a~~iEliH~asLiHDDI~ 85 (322)
+...--++|++.|.+.+....|. +.++++|++.+||||+||.||+++++++|++.++++++|+++|++|+||||||||+
T Consensus 4 y~~~i~~~i~~~l~~~~~~~~~~~l~~~~~~~~~~gGKr~Rp~L~l~~~~~~gg~~~~~l~~AaaiEliH~asLIHDDI~ 83 (274)
T 3kra_B 4 YWAAIEADIERYLKKSITIRPPETVFGPMHHLTFAAPATAASTLCLAACELVGGDRSQAMAAAAAIHLVHAAAYVHEHLP 83 (274)
T ss_dssp HHHHHHHHHHHHHHHHCCCCSSHHHHHHHHHHHHHSCCCHHHHHHHHHHHHTTCCGGGGHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99999999999999765768958899999999847886299999999999939799999899999999999999981776
Q ss_pred -CHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCC----------CCHHHHHHH--HHHHHHHHHHHHHHC
Q ss_conf -1122001101210100110234312457888876421024311----------000123456--777777545655421
Q gi|254780755|r 86 -DDSALRRGKVAARLVWGNQTSVLVGDFLLSQAFCMVIETKSQE----------ALEALSLVA--CTLAEGELRQLSLSK 152 (322)
Q Consensus 86 -D~~~~RRg~~t~~~~~G~~~Ail~GD~l~~~a~~~l~~~~~~~----------~~~~~~~~~--~~l~~Gq~~d~~~~~ 152 (322)
|+++.|||+||+|.+||++.|||+||+|++.+|++++...++. ++..+++++ .-++.||.+|+....
T Consensus 84 ddd~~~RRG~pt~h~~~G~~~AIl~GD~L~~~af~~la~~~~~~~~~~~~~~~~~i~~ls~~~~~~g~~~Gq~~d~~~~~ 163 (274)
T 3kra_B 84 LTDGSRPVSKPAIQHKYGPNVELLTGDGIVPFGFELLAGSVDPARTDDPDRILRVIIEISRAGGPEGMISGLHREEEIVD 163 (274)
T ss_dssp CSSSSSCCCSSCCCCSSCHHHHHHHHHHHHHHHHHHHHHTCCTTCTTHHHHHHHHHHHHHHHTSTTTHHHHHHHHTTCCT
T ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHC
T ss_conf 56532248999855564839999999999988999998558841024589999999999987768888712589988406
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCC---------CC---CCC
Q ss_conf 322103578989986433555544321000112222101579999973111689887641123---------67---000
Q gi|254780755|r 153 NLDVTEEDYLHVIKSKTAVLFSAALEVSSLIAGVQNSVRQALKSYGMNLGIAFQLVDDVLDYR---------GE---VNE 220 (322)
Q Consensus 153 ~~~~s~~~y~~ii~~KTa~Lf~~~~~~ga~lag~~~~~~~~l~~fG~~lG~afQI~DD~ld~~---------g~---~~~ 220 (322)
..++++.|..|+++|||+||++||.+||+++|++++.++.+++||+++|++|||.||..+|. ++ .+.
T Consensus 164 -~~~~~~~~~~i~~~KTa~Lf~~~~~~gailag~~~~~~~~l~~~G~~lGi~~qi~dd~~afQi~DD~l~~~~~~~~~~~ 242 (274)
T 3kra_B 164 -GNTSLDFIEYVCKKKYGEMHACGAACGAILGGAAEEEIQKLRNFGLYQGTLRGMMEMKNSHQLIDENIIGKLKELALEE 242 (274)
T ss_dssp -TSSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHHHH
T ss_pred -CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHCCCCCCCHHH
T ss_conf -7777899999998645399999999999981939999999999999958873224665350034016630466435998
Q ss_pred CCCHHHHH--HHHCCCCCCCCHHHHC
Q ss_conf 38401234--5421365321001101
Q gi|254780755|r 221 MGKNIGED--FRNGKPTLPVILAFQR 244 (322)
Q Consensus 221 ~GK~~g~D--l~egk~Tlpii~al~~ 244 (322)
+||+.|.| +.+||.|+|++||-.+
T Consensus 243 lgk~~g~d~~l~~~~~t~p~l~a~~~ 268 (274)
T 3kra_B 243 LGGFHGKNAELMSSLVAEPSLYAAHH 268 (274)
T ss_dssp HTTSCSSHHHHTGGGGC---------
T ss_pred HCCCCCCCHHHHCCCHHHHHHHHCCC
T ss_conf 18987861878658232899986065