HHsearch results for GI: 254780755 and protein with PDBid: 3lk5_A

>3lk5_A Geranylgeranyl pyrophosphate synthase; structural genomics, protein structure initiative; 1.90A {Corynebacterium glutamicum}
Probab=100.00  E-value=0  Score=501.33  Aligned_cols=321  Identities=25%  Similarity=0.312  Sum_probs=287.6

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH---HHHHHHCCCCHHHHHHHHHHHHHHCC------CHHHHHHHHHHH
Q ss_conf             947999999999999999998607787589999---99999679822799999999997089------857866665578
Q gi|254780755|r    1 MKMLEDLTLKDMEKVNFLILKRICSDVEMIPDV---VKYLIFSGGKRLRPMLTLATALMLEY------RGDNHVLLACAI   71 (322)
Q Consensus         1 ~~~l~~~~~~~l~~v~~~i~~~~~~~~~~l~~~---~~~~~~~gGKr~Rp~l~~l~~~~~~~------~~~~~~~~a~~i   71 (322)
                      +..+.+.+.+++.++.....+.+.+..+++.+.   ++|++.+||||+||+||+++++++++      +.+.++++|+++
T Consensus        18 l~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gGKr~Rp~l~~~~~~~~~~~~~~~~~~~~~~~~A~ai   97 (380)
T 3lk5_A           18 LDKFPEVVRDRLTQFLDAQELTIADIGAPVTDAVAHLRSFVLNGGKRIRPLYAWAGFLAAQGHKNSSEKLESVLDAAASL   97 (380)
T ss_dssp             TTTHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHTTSCCSSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
T ss_conf             99999999999999999988764113612999999999860178450619999999998288766652379999999999


Q ss_pred             HHHHHHHHHHHHHHCHHHHHHHCCCCHHH----------------CCCHHHHHHHHHHHHHHHHHHHCCCCC-----CCC
Q ss_conf             99999998752110112200110121010----------------011023431245788887642102431-----100
Q gi|254780755|r   72 EFIHTATLLHDDVVDDSALRRGKVAARLV----------------WGNQTSVLVGDFLLSQAFCMVIETKSQ-----EAL  130 (322)
Q Consensus        72 EliH~asLiHDDI~D~~~~RRg~~t~~~~----------------~G~~~Ail~GD~l~~~a~~~l~~~~~~-----~~~  130 (322)
                      |++|+||||||||||+|++|||+||+|.+                ||+..||++||++++.+++++++.+.+     ++.
T Consensus        98 EllH~asLIHDDI~D~s~~RRG~pt~h~~~~~~~~~~~~~~~~~~~g~~~ail~GD~l~~~a~~ll~~~~~~~~~~~~~~  177 (380)
T 3lk5_A           98 EFIQACALIHDDIIDSSDTRRGAPTVHRAVEADHRANNFEGDPEHFGVSVSILAGDMALVWAEDMLQDSGLSAEALARTR  177 (380)
T ss_dssp             HHHHHHHHHHHHHHTC-----------------------------CHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHH
T ss_pred             HHHHHHHHHCCCCCCCCCCCCCCCCHHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf             99999999727701599876898637652206799861453077770889999988999999998653167789999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf             0123456777777545655421322103578989986433-555544321000112222101579999973111689887
Q gi|254780755|r  131 EALSLVACTLAEGELRQLSLSKNLDVTEEDYLHVIKSKTA-VLFSAALEVSSLIAGVQNSVRQALKSYGMNLGIAFQLVD  209 (322)
Q Consensus       131 ~~~~~~~~~l~~Gq~~d~~~~~~~~~s~~~y~~ii~~KTa-~Lf~~~~~~ga~lag~~~~~~~~l~~fG~~lG~afQI~D  209 (322)
                      ..++.+..+++.||++|+.+......+.+.|+.++.+||+ ++|++||.+|++++|++++..+.+.+||+++|+||||+|
T Consensus       178 ~~~~~~~~~~~~Gq~~d~~~~~~~~~~~~~~~~~~~~kta~~l~~~~~~~ga~lag~~~~~~~~l~~~g~~lGiaFQI~D  257 (380)
T 3lk5_A          178 DAWRGMRTEVIGGQLLDIYLESHANESVELADSVNRFKTAAYTIARPLHLGASIAGGSPQLIDALLHYGHDIGIAFQLRD  257 (380)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99988888885005688875124310389999999988746999999998876534999999999999999999999988


Q ss_pred             HHHCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHCCCCCCCHHHHHHCC--CCCCCHHHHHHHHHHHHHCCHHHHHHHHH
Q ss_conf             6411236700038401234542136532100110143110001343203--68999899999999999749699999999
Q gi|254780755|r  210 DVLDYRGEVNEMGKNIGEDFRNGKPTLPVILAFQRGTKREKNFWKSTIN--DGKISVENLKKAFIIMRENRALVDTEYRA  287 (322)
Q Consensus       210 D~ld~~g~~~~~GK~~g~Dl~egk~Tlpii~al~~~~~~~~~~l~~~~~--~~~~~~~~~~~i~~ll~~~gai~~~~~~~  287 (322)
                      |++|++|++..+|||+|+||++||+|||++++++.+++.+++.+..+..  ++..+++++++++++++++|++++++..+
T Consensus       258 D~lD~~g~~~~~GK~~~~Dl~egK~Tlp~i~ale~a~~~~~e~~~~i~~~~~~~~~~~~~~~i~~~l~~~ga~~~~~~~~  337 (380)
T 3lk5_A          258 DLLGVFGDPAITGKPAGDDIREGKRTVLLALALQRADKQSPEAATAIRAGVGKVTSPEDIAVITEHIRATGAEEEVEQRI  337 (380)
T ss_dssp             HHHHHHSCHHHHSSCTTHHHHTTCCCHHHHHHHHHHHHHCHHHHHHHHHHTTTCCSHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred             HHHHHCCCHHHCCCCCCCHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHH
T ss_conf             88763089854699743787579721999999985875139999999972578999999999999999879799999999


Q ss_pred             HHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHCCC
Q ss_conf             999999999842089-9989999999999996037
Q gi|254780755|r  288 YSYGQKAKDSLRCLP-DSSWKKSLMEVVDFCLQRL  321 (322)
Q Consensus       288 ~~~~~~A~~~L~~lp-~~~~k~~L~~L~~~ii~R~  321 (322)
                      ..|.++|++.|+.+| +++.|+.|..|++++++|.
T Consensus       338 ~~~~~~A~~~L~~l~~~~~~k~~L~~L~~~~~~R~  372 (380)
T 3lk5_A          338 SQLTESGLAHLDDVDIPDEVRAQLRALAIRSTERR  372 (380)
T ss_dssp             HHHHHHHHHHGGGSCCCHHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCC
T ss_conf             99999999997559989799999999999999778