HHsearch results for GI: 254780755 and protein with PDBid: 3lk5_A
>3lk5_A Geranylgeranyl pyrophosphate synthase; structural genomics, protein structure initiative; 1.90A {Corynebacterium glutamicum}
Probab=100.00 E-value=0 Score=501.33 Aligned_cols=321 Identities=25% Similarity=0.312 Sum_probs=287.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH---HHHHHHCCCCHHHHHHHHHHHHHHCC------CHHHHHHHHHHH
Q ss_conf 947999999999999999998607787589999---99999679822799999999997089------857866665578
Q gi|254780755|r 1 MKMLEDLTLKDMEKVNFLILKRICSDVEMIPDV---VKYLIFSGGKRLRPMLTLATALMLEY------RGDNHVLLACAI 71 (322)
Q Consensus 1 ~~~l~~~~~~~l~~v~~~i~~~~~~~~~~l~~~---~~~~~~~gGKr~Rp~l~~l~~~~~~~------~~~~~~~~a~~i 71 (322)
+..+.+.+.+++.++.....+.+.+..+++.+. ++|++.+||||+||+||+++++++++ +.+.++++|+++
T Consensus 18 l~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gGKr~Rp~l~~~~~~~~~~~~~~~~~~~~~~~~A~ai 97 (380)
T 3lk5_A 18 LDKFPEVVRDRLTQFLDAQELTIADIGAPVTDAVAHLRSFVLNGGKRIRPLYAWAGFLAAQGHKNSSEKLESVLDAAASL 97 (380)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHTTSCCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
T ss_conf 99999999999999999988764113612999999999860178450619999999998288766652379999999999
Q ss_pred HHHHHHHHHHHHHHCHHHHHHHCCCCHHH----------------CCCHHHHHHHHHHHHHHHHHHHCCCCC-----CCC
Q ss_conf 99999998752110112200110121010----------------011023431245788887642102431-----100
Q gi|254780755|r 72 EFIHTATLLHDDVVDDSALRRGKVAARLV----------------WGNQTSVLVGDFLLSQAFCMVIETKSQ-----EAL 130 (322)
Q Consensus 72 EliH~asLiHDDI~D~~~~RRg~~t~~~~----------------~G~~~Ail~GD~l~~~a~~~l~~~~~~-----~~~ 130 (322)
|++|+||||||||||+|++|||+||+|.+ ||+..||++||++++.+++++++.+.+ ++.
T Consensus 98 EllH~asLIHDDI~D~s~~RRG~pt~h~~~~~~~~~~~~~~~~~~~g~~~ail~GD~l~~~a~~ll~~~~~~~~~~~~~~ 177 (380)
T 3lk5_A 98 EFIQACALIHDDIIDSSDTRRGAPTVHRAVEADHRANNFEGDPEHFGVSVSILAGDMALVWAEDMLQDSGLSAEALARTR 177 (380)
T ss_dssp HHHHHHHHHHHHHHTC-----------------------------CHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCHHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 99999999727701599876898637652206799861453077770889999988999999998653167789999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 0123456777777545655421322103578989986433-555544321000112222101579999973111689887
Q gi|254780755|r 131 EALSLVACTLAEGELRQLSLSKNLDVTEEDYLHVIKSKTA-VLFSAALEVSSLIAGVQNSVRQALKSYGMNLGIAFQLVD 209 (322)
Q Consensus 131 ~~~~~~~~~l~~Gq~~d~~~~~~~~~s~~~y~~ii~~KTa-~Lf~~~~~~ga~lag~~~~~~~~l~~fG~~lG~afQI~D 209 (322)
..++.+..+++.||++|+.+......+.+.|+.++.+||+ ++|++||.+|++++|++++..+.+.+||+++|+||||+|
T Consensus 178 ~~~~~~~~~~~~Gq~~d~~~~~~~~~~~~~~~~~~~~kta~~l~~~~~~~ga~lag~~~~~~~~l~~~g~~lGiaFQI~D 257 (380)
T 3lk5_A 178 DAWRGMRTEVIGGQLLDIYLESHANESVELADSVNRFKTAAYTIARPLHLGASIAGGSPQLIDALLHYGHDIGIAFQLRD 257 (380)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99988888885005688875124310389999999988746999999998876534999999999999999999999988
Q ss_pred HHHCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHCCCCCCCHHHHHHCC--CCCCCHHHHHHHHHHHHHCCHHHHHHHHH
Q ss_conf 6411236700038401234542136532100110143110001343203--68999899999999999749699999999
Q gi|254780755|r 210 DVLDYRGEVNEMGKNIGEDFRNGKPTLPVILAFQRGTKREKNFWKSTIN--DGKISVENLKKAFIIMRENRALVDTEYRA 287 (322)
Q Consensus 210 D~ld~~g~~~~~GK~~g~Dl~egk~Tlpii~al~~~~~~~~~~l~~~~~--~~~~~~~~~~~i~~ll~~~gai~~~~~~~ 287 (322)
|++|++|++..+|||+|+||++||+|||++++++.+++.+++.+..+.. ++..+++++++++++++++|++++++..+
T Consensus 258 D~lD~~g~~~~~GK~~~~Dl~egK~Tlp~i~ale~a~~~~~e~~~~i~~~~~~~~~~~~~~~i~~~l~~~ga~~~~~~~~ 337 (380)
T 3lk5_A 258 DLLGVFGDPAITGKPAGDDIREGKRTVLLALALQRADKQSPEAATAIRAGVGKVTSPEDIAVITEHIRATGAEEEVEQRI 337 (380)
T ss_dssp HHHHHHSCHHHHSSCTTHHHHTTCCCHHHHHHHHHHHHHCHHHHHHHHHHTTTCCSHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHCCCHHHCCCCCCCHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHH
T ss_conf 88763089854699743787579721999999985875139999999972578999999999999999879799999999
Q ss_pred HHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHCCC
Q ss_conf 999999999842089-9989999999999996037
Q gi|254780755|r 288 YSYGQKAKDSLRCLP-DSSWKKSLMEVVDFCLQRL 321 (322)
Q Consensus 288 ~~~~~~A~~~L~~lp-~~~~k~~L~~L~~~ii~R~ 321 (322)
..|.++|++.|+.+| +++.|+.|..|++++++|.
T Consensus 338 ~~~~~~A~~~L~~l~~~~~~k~~L~~L~~~~~~R~ 372 (380)
T 3lk5_A 338 SQLTESGLAHLDDVDIPDEVRAQLRALAIRSTERR 372 (380)
T ss_dssp HHHHHHHHHHGGGSCCCHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCC
T ss_conf 99999999997559989799999999999999778