HHsearch results for GI: 254780755 and protein with PDBid: 3lmd_A

>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum}
Probab=100.00  E-value=0  Score=553.88  Aligned_cols=318  Identities=29%  Similarity=0.448  Sum_probs=300.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHHHH
Q ss_conf             47999999999999999998607787589999999996798227999999999970898-57866665578999999987
Q gi|254780755|r    2 KMLEDLTLKDMEKVNFLILKRICSDVEMIPDVVKYLIFSGGKRLRPMLTLATALMLEYR-GDNHVLLACAIEFIHTATLL   80 (322)
Q Consensus         2 ~~l~~~~~~~l~~v~~~i~~~~~~~~~~l~~~~~~~~~~gGKr~Rp~l~~l~~~~~~~~-~~~~~~~a~~iEliH~asLi   80 (322)
                      ..+...+.+++++|++.|.+.+.+..|.+.+++.|++.+||||+||+||++++++++++ .+.++++|+++||+|+||||
T Consensus        34 ~~l~~~i~~~l~~ve~~l~~~l~~~~~~l~~~~~~~~~~GGKrlRp~l~l~~~~~~~~~~~~~~~~~A~aiEllH~asLi  113 (360)
T 3lmd_A           34 PELTARINDAMVQVEELLHTELSSGEDFLVDIVMHLTRAGGKRFRPMFALLASEFGEKPLSENVIKAAVVVEITHLATLY  113 (360)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHCCCCSCCHHHHHHHHHHTTSSSTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             89999999999999999998826884479999999870896169999999999982999358899999999999999999


Q ss_pred             HHHHHCHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
Q ss_conf             52110112200110121010011023431245788887642102431100012345677777754565542132210357
Q gi|254780755|r   81 HDDVVDDSALRRGKVAARLVWGNQTSVLVGDFLLSQAFCMVIETKSQEALEALSLVACTLAEGELRQLSLSKNLDVTEED  160 (322)
Q Consensus        81 HDDI~D~~~~RRg~~t~~~~~G~~~Ail~GD~l~~~a~~~l~~~~~~~~~~~~~~~~~~l~~Gq~~d~~~~~~~~~s~~~  160 (322)
                      ||||||+|++|||+||+|.+||+..||++||||+++++.+++..+. .....+++++.++++||++|+.+..+. .+.++
T Consensus       114 HDDI~D~s~~RRG~pt~~~~~g~~~ail~GD~l~~~a~~~~~~~~~-~~~~~~~~~~~~~~~GQ~~dl~~~~~~-~~~e~  191 (360)
T 3lmd_A          114 HDDVMDEASMRRGVPSANARWDNSVAILAGDILLAHASGLMSQLGT-DTVAHFAETFGELVTGQMRETVGPRDT-DPIEH  191 (360)
T ss_dssp             HHHHHC-----------CHHHHHHHHHHHHHHHHHHHHHHHHHHCH-HHHHHHHHHHHHHHHHHHHHHHCCTTS-CHHHH
T ss_pred             HCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHHHHHHCCCCC-CCHHH
T ss_conf             5686889999999875133357425334064878999999860240-355888887689887778987465666-87999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCH
Q ss_conf             89899864335555443210001122221015799999731116898876411236700038401234542136532100
Q gi|254780755|r  161 YLHVIKSKTAVLFSAALEVSSLIAGVQNSVRQALKSYGMNLGIAFQLVDDVLDYRGEVNEMGKNIGEDFRNGKPTLPVIL  240 (322)
Q Consensus       161 y~~ii~~KTa~Lf~~~~~~ga~lag~~~~~~~~l~~fG~~lG~afQI~DD~ld~~g~~~~~GK~~g~Dl~egk~Tlpii~  240 (322)
                      |++|+++|||+||++||.+|++++|++++..+.+.+||+++|+||||+||++|++|+++.+|||+|+||++||+|||+++
T Consensus       192 y~~~i~~KTa~L~~~~~~~ga~~ag~~~~~~~~l~~~G~~lG~aFQi~DDilD~~~~~~~~GK~~g~Dl~eGK~Tlpvi~  271 (360)
T 3lmd_A          192 YTNVIREKTGVLIASAGYLGAMHAGAAPEHIDALKNFGAAVGMIFQIVDDIIDIFSETHESGKTPGTDLREGVFTLPVLY  271 (360)
T ss_dssp             HHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------CCHHHHHTCCCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCHHHHHHCCCCCHHHHH
T ss_conf             99999999999999999999998298999999999999999999998778653128854419964469876997579999


Q ss_pred             HHHCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCC
Q ss_conf             11014311000134320368999899999999999749699999999999999999842089998999999999999603
Q gi|254780755|r  241 AFQRGTKREKNFWKSTINDGKISVENLKKAFIIMRENRALVDTEYRAYSYGQKAKDSLRCLPDSSWKKSLMEVVDFCLQR  320 (322)
Q Consensus       241 al~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~ll~~~gai~~~~~~~~~~~~~A~~~L~~lp~~~~k~~L~~L~~~ii~R  320 (322)
                      |+++.++ +++.+.+++.++..+++++++++++++++|++++++..++.|.++|++.|+.||+++.|+.|..|++|+++|
T Consensus       272 al~~~~~-~~~~l~~~~~~~~~~~~~i~~i~~ll~~~ga~~~a~~~~~~~~~~A~~~L~~lp~~~~r~~L~~L~~~v~~R  350 (360)
T 3lmd_A          272 ALREDTP-VGAELRDILTGPLEDDETVNHVLELLSQSGGRQAALDEVYRYMDIANAELDRLPDSTVKEALRNLATFTVKR  350 (360)
T ss_dssp             HHHCCSH-HHHHHHHHCSSCCCSHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHTTSCCSHHHHHHHHHHHHHHHT
T ss_pred             HHHHCCH-HHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
T ss_conf             9985989-999999998187899999999999999859799999999999999999985699978999999999999997


Q ss_pred             CC
Q ss_conf             79
Q gi|254780755|r  321 LN  322 (322)
Q Consensus       321 ~~  322 (322)
                      +.
T Consensus       351 i~  352 (360)
T 3lmd_A          351 VG  352 (360)
T ss_dssp             TS
T ss_pred             CC
T ss_conf             87