HHsearch results for GI: 254780755 and protein with PDBid: 3lmd_A
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum}
Probab=100.00 E-value=0 Score=553.88 Aligned_cols=318 Identities=29% Similarity=0.448 Sum_probs=300.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHHHH
Q ss_conf 47999999999999999998607787589999999996798227999999999970898-57866665578999999987
Q gi|254780755|r 2 KMLEDLTLKDMEKVNFLILKRICSDVEMIPDVVKYLIFSGGKRLRPMLTLATALMLEYR-GDNHVLLACAIEFIHTATLL 80 (322)
Q Consensus 2 ~~l~~~~~~~l~~v~~~i~~~~~~~~~~l~~~~~~~~~~gGKr~Rp~l~~l~~~~~~~~-~~~~~~~a~~iEliH~asLi 80 (322)
..+...+.+++++|++.|.+.+.+..|.+.+++.|++.+||||+||+||++++++++++ .+.++++|+++||+|+||||
T Consensus 34 ~~l~~~i~~~l~~ve~~l~~~l~~~~~~l~~~~~~~~~~GGKrlRp~l~l~~~~~~~~~~~~~~~~~A~aiEllH~asLi 113 (360)
T 3lmd_A 34 PELTARINDAMVQVEELLHTELSSGEDFLVDIVMHLTRAGGKRFRPMFALLASEFGEKPLSENVIKAAVVVEITHLATLY 113 (360)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHCCCCSCCHHHHHHHHHHTTSSSTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 89999999999999999998826884479999999870896169999999999982999358899999999999999999
Q ss_pred HHHHHCHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
Q ss_conf 52110112200110121010011023431245788887642102431100012345677777754565542132210357
Q gi|254780755|r 81 HDDVVDDSALRRGKVAARLVWGNQTSVLVGDFLLSQAFCMVIETKSQEALEALSLVACTLAEGELRQLSLSKNLDVTEED 160 (322)
Q Consensus 81 HDDI~D~~~~RRg~~t~~~~~G~~~Ail~GD~l~~~a~~~l~~~~~~~~~~~~~~~~~~l~~Gq~~d~~~~~~~~~s~~~ 160 (322)
||||||+|++|||+||+|.+||+..||++||||+++++.+++..+. .....+++++.++++||++|+.+..+. .+.++
T Consensus 114 HDDI~D~s~~RRG~pt~~~~~g~~~ail~GD~l~~~a~~~~~~~~~-~~~~~~~~~~~~~~~GQ~~dl~~~~~~-~~~e~ 191 (360)
T 3lmd_A 114 HDDVMDEASMRRGVPSANARWDNSVAILAGDILLAHASGLMSQLGT-DTVAHFAETFGELVTGQMRETVGPRDT-DPIEH 191 (360)
T ss_dssp HHHHHC-----------CHHHHHHHHHHHHHHHHHHHHHHHHHHCH-HHHHHHHHHHHHHHHHHHHHHHCCTTS-CHHHH
T ss_pred HCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHHHHHHCCCCC-CCHHH
T ss_conf 5686889999999875133357425334064878999999860240-355888887689887778987465666-87999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCH
Q ss_conf 89899864335555443210001122221015799999731116898876411236700038401234542136532100
Q gi|254780755|r 161 YLHVIKSKTAVLFSAALEVSSLIAGVQNSVRQALKSYGMNLGIAFQLVDDVLDYRGEVNEMGKNIGEDFRNGKPTLPVIL 240 (322)
Q Consensus 161 y~~ii~~KTa~Lf~~~~~~ga~lag~~~~~~~~l~~fG~~lG~afQI~DD~ld~~g~~~~~GK~~g~Dl~egk~Tlpii~ 240 (322)
|++|+++|||+||++||.+|++++|++++..+.+.+||+++|+||||+||++|++|+++.+|||+|+||++||+|||+++
T Consensus 192 y~~~i~~KTa~L~~~~~~~ga~~ag~~~~~~~~l~~~G~~lG~aFQi~DDilD~~~~~~~~GK~~g~Dl~eGK~Tlpvi~ 271 (360)
T 3lmd_A 192 YTNVIREKTGVLIASAGYLGAMHAGAAPEHIDALKNFGAAVGMIFQIVDDIIDIFSETHESGKTPGTDLREGVFTLPVLY 271 (360)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------CCHHHHHTCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCHHHHHHCCCCCHHHHH
T ss_conf 99999999999999999999998298999999999999999999998778653128854419964469876997579999
Q ss_pred HHHCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 11014311000134320368999899999999999749699999999999999999842089998999999999999603
Q gi|254780755|r 241 AFQRGTKREKNFWKSTINDGKISVENLKKAFIIMRENRALVDTEYRAYSYGQKAKDSLRCLPDSSWKKSLMEVVDFCLQR 320 (322)
Q Consensus 241 al~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~ll~~~gai~~~~~~~~~~~~~A~~~L~~lp~~~~k~~L~~L~~~ii~R 320 (322)
|+++.++ +++.+.+++.++..+++++++++++++++|++++++..++.|.++|++.|+.||+++.|+.|..|++|+++|
T Consensus 272 al~~~~~-~~~~l~~~~~~~~~~~~~i~~i~~ll~~~ga~~~a~~~~~~~~~~A~~~L~~lp~~~~r~~L~~L~~~v~~R 350 (360)
T 3lmd_A 272 ALREDTP-VGAELRDILTGPLEDDETVNHVLELLSQSGGRQAALDEVYRYMDIANAELDRLPDSTVKEALRNLATFTVKR 350 (360)
T ss_dssp HHHCCSH-HHHHHHHHCSSCCCSHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHTTSCCSHHHHHHHHHHHHHHHT
T ss_pred HHHHCCH-HHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
T ss_conf 9985989-999999998187899999999999999859799999999999999999985699978999999999999997
Q ss_pred CC
Q ss_conf 79
Q gi|254780755|r 321 LN 322 (322)
Q Consensus 321 ~~ 322 (322)
+.
T Consensus 351 i~ 352 (360)
T 3lmd_A 351 VG 352 (360)
T ss_dssp TS
T ss_pred CC
T ss_conf 87