HHsearch results for GI: 254780755 and protein with PDBid: 3lsn_A
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A*
Probab=100.00 E-value=0 Score=435.96 Aligned_cols=280 Identities=26% Similarity=0.434 Sum_probs=234.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCH---HHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 79999999999999999986077875---899999999967982279999999999708985786666557899999998
Q gi|254780755|r 3 MLEDLTLKDMEKVNFLILKRICSDVE---MIPDVVKYLIFSGGKRLRPMLTLATALMLEYRGDNHVLLACAIEFIHTATL 79 (322)
Q Consensus 3 ~l~~~~~~~l~~v~~~i~~~~~~~~~---~l~~~~~~~~~~gGKr~Rp~l~~l~~~~~~~~~~~~~~~a~~iEliH~asL 79 (322)
.|..+....-++|+..+.+.+....| .+.++++|.+.+||||+||.+++++++++|+++++++.+|+++||+|+|||
T Consensus 2 ~l~~~~~~~~~~id~~l~~~~~~~~~~~~~l~e~~~y~~~~gGKr~Rp~l~l~~~~~~g~~~~~~~~~A~aiEllH~asL 81 (304)
T 3lsn_A 2 SLTAYQASSQARVDAAMHTLFTAPSPELARLYEAMRYSVMNGGKRVRPLLAYAACEALGGKPEQANGAACAVELIHAYSL 81 (304)
T ss_dssp CHHHHHHHHHHHHHHHHHGGGCCSSGGGHHHHHHHHHHHTTTCCCHHHHHHHHHHHHTTCCGGGGHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 86899999999999999986055897357899999988449820599999999999849998999999999999999999
Q ss_pred HHHHHH--CHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCC-----CHHHHHHHHHHHHHHHHH---H-
Q ss_conf 752110--11220011012101001102343124578888764210243110-----001234567777775456---5-
Q gi|254780755|r 80 LHDDVV--DDSALRRGKVAARLVWGNQTSVLVGDFLLSQAFCMVIETKSQEA-----LEALSLVACTLAEGELRQ---L- 148 (322)
Q Consensus 80 iHDDI~--D~~~~RRg~~t~~~~~G~~~Ail~GD~l~~~a~~~l~~~~~~~~-----~~~~~~~~~~l~~Gq~~d---~- 148 (322)
|||||+ |+|++|||+||+|.+||++.||++||+|++.+|.++++...... +..+........+++..+ .
T Consensus 82 iHDDI~~~D~s~~RRG~pt~h~~~G~~~AIl~GD~l~~~a~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 161 (304)
T 3lsn_A 82 VHDDLPAMDDDDLRRGQPTTHKAFDEACAILAGDGLQSLAFSALLDPALSDASAEIRLRMVTTLAQAAGPAGMVGGQAID 161 (304)
T ss_dssp HHHTSTTTTCCSEETTEECHHHHSCHHHHHHHHHHHHHHHHHHHHCTTSCCCCHHHHHHHHHHHHHHHSTTTHHHHHHHH
T ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 96177556777778987775444451999998799999799985042322017999999878999998899998768888
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHH
Q ss_conf 5421322103578989986433555544321000112-222101579999973111689887641123670003840123
Q gi|254780755|r 149 SLSKNLDVTEEDYLHVIKSKTAVLFSAALEVSSLIAG-VQNSVRQALKSYGMNLGIAFQLVDDVLDYRGEVNEMGKNIGE 227 (322)
Q Consensus 149 ~~~~~~~~s~~~y~~ii~~KTa~Lf~~~~~~ga~lag-~~~~~~~~l~~fG~~lG~afQI~DD~ld~~g~~~~~GK~~g~ 227 (322)
....+...+.++|++|++.|||+||.++|.+|++++| .+++..+.+.+||+++|+||||+||++|++|+++.+|||+|+
T Consensus 162 ~~~~~~~~~~~~~~~i~~~KT~~l~~~~~~~~~~~a~~~~~~~~~~l~~~g~~lG~aFQi~DDilD~~g~~~~~GK~~g~ 241 (304)
T 3lsn_A 162 LGSVGLKLDQQALEYMHRHKTGALIEASVILGALASGRAEKGELKALQTYAQAIGLAFQVQDDILDVESDTATLGKRQGA 241 (304)
T ss_dssp HHTTTCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCHHH
T ss_conf 75210245569999999999899999999999998565406799999999999999999999987622896551986767
Q ss_pred HHHHCCCCCCCCHHHHCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
Q ss_conf 45421365321001101431100013432036899989999999999974969999999999999999984208999899
Q gi|254780755|r 228 DFRNGKPTLPVILAFQRGTKREKNFWKSTINDGKISVENLKKAFIIMRENRALVDTEYRAYSYGQKAKDSLRCLPDSSWK 307 (322)
Q Consensus 228 Dl~egk~Tlpii~al~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~ll~~~gai~~~~~~~~~~~~~A~~~L~~lp~~~~k 307 (322)
||++||+|||++++++. +++.++++.++|++.+..++. ..
T Consensus 242 Dl~~gK~Tlp~i~al~~--------------------------------------a~~~~~~~~~~a~~~l~~~~~--~~ 281 (304)
T 3lsn_A 242 DIARDKPTYPALLGLAA--------------------------------------AKEYALELRDQALHALRPFDA--AA 281 (304)
T ss_dssp ------CCHHHHHCHHH--------------------------------------HHHHHHHHHHHHHHHTTTSCG--GG
T ss_pred HHHCCCCCHHHHHHHHH--------------------------------------HHHHHHHHHHHHHHHHHHCCC--CH
T ss_conf 97769767999999998--------------------------------------899999999999987464780--17
Q ss_pred HHHHHHHHHHHCCCC
Q ss_conf 999999999960379
Q gi|254780755|r 308 KSLMEVVDFCLQRLN 322 (322)
Q Consensus 308 ~~L~~L~~~ii~R~~ 322 (322)
+.|.+|++|+++|.|
T Consensus 282 ~~L~el~~~i~~Rk~ 296 (304)
T 3lsn_A 282 EPLRELARYIVERRS 296 (304)
T ss_dssp HHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHC
T ss_conf 999999999999744