HHsearch results for GI: 254780755 and protein with PDBid: 3lsn_A

>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A*
Probab=100.00  E-value=0  Score=435.96  Aligned_cols=280  Identities=26%  Similarity=0.434  Sum_probs=234.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCH---HHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             79999999999999999986077875---899999999967982279999999999708985786666557899999998
Q gi|254780755|r    3 MLEDLTLKDMEKVNFLILKRICSDVE---MIPDVVKYLIFSGGKRLRPMLTLATALMLEYRGDNHVLLACAIEFIHTATL   79 (322)
Q Consensus         3 ~l~~~~~~~l~~v~~~i~~~~~~~~~---~l~~~~~~~~~~gGKr~Rp~l~~l~~~~~~~~~~~~~~~a~~iEliH~asL   79 (322)
                      .|..+....-++|+..+.+.+....|   .+.++++|.+.+||||+||.+++++++++|+++++++.+|+++||+|+|||
T Consensus         2 ~l~~~~~~~~~~id~~l~~~~~~~~~~~~~l~e~~~y~~~~gGKr~Rp~l~l~~~~~~g~~~~~~~~~A~aiEllH~asL   81 (304)
T 3lsn_A            2 SLTAYQASSQARVDAAMHTLFTAPSPELARLYEAMRYSVMNGGKRVRPLLAYAACEALGGKPEQANGAACAVELIHAYSL   81 (304)
T ss_dssp             CHHHHHHHHHHHHHHHHHGGGCCSSGGGHHHHHHHHHHHTTTCCCHHHHHHHHHHHHTTCCGGGGHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             86899999999999999986055897357899999988449820599999999999849998999999999999999999


Q ss_pred             HHHHHH--CHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCC-----CHHHHHHHHHHHHHHHHH---H-
Q ss_conf             752110--11220011012101001102343124578888764210243110-----001234567777775456---5-
Q gi|254780755|r   80 LHDDVV--DDSALRRGKVAARLVWGNQTSVLVGDFLLSQAFCMVIETKSQEA-----LEALSLVACTLAEGELRQ---L-  148 (322)
Q Consensus        80 iHDDI~--D~~~~RRg~~t~~~~~G~~~Ail~GD~l~~~a~~~l~~~~~~~~-----~~~~~~~~~~l~~Gq~~d---~-  148 (322)
                      |||||+  |+|++|||+||+|.+||++.||++||+|++.+|.++++......     +..+........+++..+   . 
T Consensus        82 iHDDI~~~D~s~~RRG~pt~h~~~G~~~AIl~GD~l~~~a~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  161 (304)
T 3lsn_A           82 VHDDLPAMDDDDLRRGQPTTHKAFDEACAILAGDGLQSLAFSALLDPALSDASAEIRLRMVTTLAQAAGPAGMVGGQAID  161 (304)
T ss_dssp             HHHTSTTTTCCSEETTEECHHHHSCHHHHHHHHHHHHHHHHHHHHCTTSCCCCHHHHHHHHHHHHHHHSTTTHHHHHHHH
T ss_pred             HHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             96177556777778987775444451999998799999799985042322017999999878999998899998768888


Q ss_pred             HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHH
Q ss_conf             5421322103578989986433555544321000112-222101579999973111689887641123670003840123
Q gi|254780755|r  149 SLSKNLDVTEEDYLHVIKSKTAVLFSAALEVSSLIAG-VQNSVRQALKSYGMNLGIAFQLVDDVLDYRGEVNEMGKNIGE  227 (322)
Q Consensus       149 ~~~~~~~~s~~~y~~ii~~KTa~Lf~~~~~~ga~lag-~~~~~~~~l~~fG~~lG~afQI~DD~ld~~g~~~~~GK~~g~  227 (322)
                      ....+...+.++|++|++.|||+||.++|.+|++++| .+++..+.+.+||+++|+||||+||++|++|+++.+|||+|+
T Consensus       162 ~~~~~~~~~~~~~~~i~~~KT~~l~~~~~~~~~~~a~~~~~~~~~~l~~~g~~lG~aFQi~DDilD~~g~~~~~GK~~g~  241 (304)
T 3lsn_A          162 LGSVGLKLDQQALEYMHRHKTGALIEASVILGALASGRAEKGELKALQTYAQAIGLAFQVQDDILDVESDTATLGKRQGA  241 (304)
T ss_dssp             HHTTTCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred             HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCHHH
T ss_conf             75210245569999999999899999999999998565406799999999999999999999987622896551986767


Q ss_pred             HHHHCCCCCCCCHHHHCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
Q ss_conf             45421365321001101431100013432036899989999999999974969999999999999999984208999899
Q gi|254780755|r  228 DFRNGKPTLPVILAFQRGTKREKNFWKSTINDGKISVENLKKAFIIMRENRALVDTEYRAYSYGQKAKDSLRCLPDSSWK  307 (322)
Q Consensus       228 Dl~egk~Tlpii~al~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~ll~~~gai~~~~~~~~~~~~~A~~~L~~lp~~~~k  307 (322)
                      ||++||+|||++++++.                                      +++.++++.++|++.+..++.  ..
T Consensus       242 Dl~~gK~Tlp~i~al~~--------------------------------------a~~~~~~~~~~a~~~l~~~~~--~~  281 (304)
T 3lsn_A          242 DIARDKPTYPALLGLAA--------------------------------------AKEYALELRDQALHALRPFDA--AA  281 (304)
T ss_dssp             ------CCHHHHHCHHH--------------------------------------HHHHHHHHHHHHHHHTTTSCG--GG
T ss_pred             HHHCCCCCHHHHHHHHH--------------------------------------HHHHHHHHHHHHHHHHHHCCC--CH
T ss_conf             97769767999999998--------------------------------------899999999999987464780--17


Q ss_pred             HHHHHHHHHHHCCCC
Q ss_conf             999999999960379
Q gi|254780755|r  308 KSLMEVVDFCLQRLN  322 (322)
Q Consensus       308 ~~L~~L~~~ii~R~~  322 (322)
                      +.|.+|++|+++|.|
T Consensus       282 ~~L~el~~~i~~Rk~  296 (304)
T 3lsn_A          282 EPLRELARYIVERRS  296 (304)
T ss_dssp             HHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHHHHC
T ss_conf             999999999999744