HHsearch results for GI: 254780755 and protein with PDBid: 3mzv_A

>3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus}
Probab=100.00  E-value=0  Score=566.14  Aligned_cols=320  Identities=45%  Similarity=0.717  Sum_probs=311.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             4799999999999999999860778-758999999999679822799999999997089857866665578999999987
Q gi|254780755|r    2 KMLEDLTLKDMEKVNFLILKRICSD-VEMIPDVVKYLIFSGGKRLRPMLTLATALMLEYRGDNHVLLACAIEFIHTATLL   80 (322)
Q Consensus         2 ~~l~~~~~~~l~~v~~~i~~~~~~~-~~~l~~~~~~~~~~gGKr~Rp~l~~l~~~~~~~~~~~~~~~a~~iEliH~asLi   80 (322)
                      ..+.+++.+++++|+..|.+.+.++ .|.+++++.|++.+||||+||+||+++++++|++.+.++++|+++|++|+||||
T Consensus        12 ~~l~~~l~~~l~~v~~~i~~~l~s~~~~~i~~~~~~~~~~gGKr~Rp~l~ll~~~~~~~~~~~~~~~A~aiEliH~asLI   91 (341)
T 3mzv_A           12 DRLAQALAEDMAAVNALIRERMSSEHAPRIPEVTAHLIEAGGKRLRPMLTLAAARLVGYGGPFHVHLAATVEFIHTATLL   91 (341)
T ss_dssp             HHHHHHTHHHHHHHHHHHHHHSCCSSCTHHHHHHHHHHHSCCCCHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999999844477167999999998189962889999999998399707799999999999999998


Q ss_pred             HHHHHCHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
Q ss_conf             52110112200110121010011023431245788887642102431100012345677777754565542132210357
Q gi|254780755|r   81 HDDVVDDSALRRGKVAARLVWGNQTSVLVGDFLLSQAFCMVIETKSQEALEALSLVACTLAEGELRQLSLSKNLDVTEED  160 (322)
Q Consensus        81 HDDI~D~~~~RRg~~t~~~~~G~~~Ail~GD~l~~~a~~~l~~~~~~~~~~~~~~~~~~l~~Gq~~d~~~~~~~~~s~~~  160 (322)
                      ||||||+|++|||+||+|.+||+++|||+||||++.+|..+++.++.++.+.+++++..+++||..|+.+..+...++++
T Consensus        92 HDDI~D~~~~RRG~pt~~~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~Gq~~~~~~~~~~~~~~~~  171 (341)
T 3mzv_A           92 HDDVVDESRQRRGRPTANLLWDNKSSVLVGDYLFARSFQLMTDTGNMRVMEILANASAVIAEGEVLQLTAAQNLATTEDI  171 (341)
T ss_dssp             HHHC------CTTSCCHHHHSCHHHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHHHHHHTTCTTCCHHH
T ss_pred             CCCCCCCCCCCCCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCHHH
T ss_conf             18766678655699975330682499998899999999864213654799999998677606007998750267998999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCH
Q ss_conf             89899864335555443210001122221015799999731116898876411236700038401234542136532100
Q gi|254780755|r  161 YLHVIKSKTAVLFSAALEVSSLIAGVQNSVRQALKSYGMNLGIAFQLVDDVLDYRGEVNEMGKNIGEDFRNGKPTLPVIL  240 (322)
Q Consensus       161 y~~ii~~KTa~Lf~~~~~~ga~lag~~~~~~~~l~~fG~~lG~afQI~DD~ld~~g~~~~~GK~~g~Dl~egk~Tlpii~  240 (322)
                      |++|+.+|||+||++||.+||+++|++++..+.+..||+++|+||||+||++|++|+++.+|||+|+|+++||+|||+++
T Consensus       172 yl~~i~~KTa~L~~~~~~~ga~l~~~~~~~~~~l~~~G~~lG~AFQI~DD~ld~~~d~~~~GK~~g~Dl~egk~Tlpli~  251 (341)
T 3mzv_A          172 YLRVIRGKTAALFSAATEVGGIIGGAPEDQVQALFDYGDALGIAFQIVDDLLDYGGKSAEIGKNTGDDFRERKLTMPVIK  251 (341)
T ss_dssp             HHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHC----------CCHHHHTTCCCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCHHHCCCCHHHHHH
T ss_conf             99999999999999999984101179989999999999999999998888765307866638552758656984199999


Q ss_pred             HHHCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCC
Q ss_conf             11014311000134320368999899999999999749699999999999999999842089998999999999999603
Q gi|254780755|r  241 AFQRGTKREKNFWKSTINDGKISVENLKKAFIIMRENRALVDTEYRAYSYGQKAKDSLRCLPDSSWKKSLMEVVDFCLQR  320 (322)
Q Consensus       241 al~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~ll~~~gai~~~~~~~~~~~~~A~~~L~~lp~~~~k~~L~~L~~~ii~R  320 (322)
                      |+++.++.++..+..+++++..++++++++++++.++|++++|+..++.|.++|++.|+.||+++.|+.|.+|++|+++|
T Consensus       252 al~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~l~~~g~~~~a~~~~~~~~~~A~~~L~~lp~s~~k~~L~~L~~~v~~R  331 (341)
T 3mzv_A          252 AVALADEAERAFWKRVIEKGDQQDGDLEHAMALMTKHGTLEATRLAAIGWTDTARKALAKLPDHPLRQMLDDLADYVVER  331 (341)
T ss_dssp             HHHTCCHHHHHHHHHHTTSCCCCTTHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTGG
T ss_pred             HHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
T ss_conf             99869999899999998668999999999999999869899999999999999999986699978999999999999881


Q ss_pred             C
Q ss_conf             7
Q gi|254780755|r  321 L  321 (322)
Q Consensus       321 ~  321 (322)
                      .
T Consensus       332 ~  332 (341)
T 3mzv_A          332 V  332 (341)
T ss_dssp             G
T ss_pred             C
T ss_conf             8