HHsearch results for GI: 254780755 and protein with PDBid: 3nf2_A

>3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.20A {Streptomyces coelicolor}
Probab=100.00  E-value=0  Score=523.11  Aligned_cols=318  Identities=25%  Similarity=0.348  Sum_probs=293.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH-----------CCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf             7999999999999999998607787589999999996-----------79822799999999997089857866665578
Q gi|254780755|r    3 MLEDLTLKDMEKVNFLILKRICSDVEMIPDVVKYLIF-----------SGGKRLRPMLTLATALMLEYRGDNHVLLACAI   71 (322)
Q Consensus         3 ~l~~~~~~~l~~v~~~i~~~~~~~~~~l~~~~~~~~~-----------~gGKr~Rp~l~~l~~~~~~~~~~~~~~~a~~i   71 (322)
                      .+..++......|++.+.+.+.+.+|.+.+++.|++.           .||||+||.||+++++++|+++++++++|+++
T Consensus         4 d~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GGKr~Rp~l~l~~~~~~g~~~~~~~~~A~ai   83 (352)
T 3nf2_A            4 DVTALLERGRTLATPVLRAAVDRLAPPMDTVAAYHFGWIDAQGNPADGDGGKAVRPALAVLSAEVTGAAPEVGVPGAVAV   83 (352)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHTSCTTHHHHHHHHTTSBCTTSCBCCCCCCCCHHHHHHHHHHHTTTCCGGGGHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf             89999999999999999999854582489999976101222047276789735999999999998198857899999999


Q ss_pred             HHHHHHHHHHHHHHCHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHHHHHHCCCCC---CCCHHHHHHHHHHHHHHHHHH
Q ss_conf             99999998752110112200110121010011023431245788887642102431---100012345677777754565
Q gi|254780755|r   72 EFIHTATLLHDDVVDDSALRRGKVAARLVWGNQTSVLVGDFLLSQAFCMVIETKSQ---EALEALSLVACTLAEGELRQL  148 (322)
Q Consensus        72 EliH~asLiHDDI~D~~~~RRg~~t~~~~~G~~~Ail~GD~l~~~a~~~l~~~~~~---~~~~~~~~~~~~l~~Gq~~d~  148 (322)
                      ||+|+||||||||||+|++|||+||+|.+||++.|||+||+|++.+|.++++.+..   .....++.+...+++||.+|+
T Consensus        84 EllH~asLIHDDi~D~s~~RRG~pt~h~~~G~~~Ail~Gd~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~gq~~d~  163 (352)
T 3nf2_A           84 ELVHNFSLLHDDLMDGDEQRRHRDTVWKVHGPAQAILVGDALFALANEVLLELGTVEAGRATRRLTKASRSLIDGQAQDI  163 (352)
T ss_dssp             HHHHHHHHHHHHHHHTCCEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHH
T ss_conf             99999999958776799777988060334587999997224899999999864653104677767765031225306999


Q ss_pred             HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf             54213221035789899864335555443210001122221015799999731116898876411236700038401234
Q gi|254780755|r  149 SLSKNLDVTEEDYLHVIKSKTAVLFSAALEVSSLIAGVQNSVRQALKSYGMNLGIAFQLVDDVLDYRGEVNEMGKNIGED  228 (322)
Q Consensus       149 ~~~~~~~~s~~~y~~ii~~KTa~Lf~~~~~~ga~lag~~~~~~~~l~~fG~~lG~afQI~DD~ld~~g~~~~~GK~~g~D  228 (322)
                      .+..+...++++|++|+.+|||+||++||.+|++++|++++.++.+.+||+++|+||||+||++|++|+++.+|||+|+|
T Consensus       164 ~~~~~~~~~~~~y~~i~~~KTa~L~~~~~~~ga~~a~~~~~~~~~l~~~g~~lGiaFQi~DDilD~~~~~~~~GK~~g~D  243 (352)
T 3nf2_A          164 SYEHRDRVSVEECLEMEGNKTGALLACASSIGAVLGGADERTADTLEKYGYHLGLAFQAVDDLLGIWGDPDATGKQTWSD  243 (352)
T ss_dssp             HHTTCSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHSSCTTHH
T ss_pred             HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCC
T ss_conf             87760235699999999867899999999987754126599999999999999999986343442038836759813650


Q ss_pred             HHHCCCCCCCCHHHHCCCCCCCHHHHHHCCC-------CCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             5421365321001101431100013432036-------899989999999999974969999999999999999984208
Q gi|254780755|r  229 FRNGKPTLPVILAFQRGTKREKNFWKSTIND-------GKISVENLKKAFIIMRENRALVDTEYRAYSYGQKAKDSLRCL  301 (322)
Q Consensus       229 l~egk~Tlpii~al~~~~~~~~~~l~~~~~~-------~~~~~~~~~~i~~ll~~~gai~~~~~~~~~~~~~A~~~L~~l  301 (322)
                      |++||+|||+++|++..++.+++ +.+++.+       .+.+++++.++++++.++|++++++.+++.|.++|++.|+.+
T Consensus       244 l~egK~Tlpvi~al~~~~~~~k~-l~~il~~~~~~~~~~~~~~~~i~~~~~li~~~gai~~~~~~a~~~~~~A~~~L~~l  322 (352)
T 3nf2_A          244 LRQRKKSLPVVAALAAGGAASER-LGEILTADAKASDFANFSEEEFAARAALIEEAGGREWTADEARRQHTIAIEALDAV  322 (352)
T ss_dssp             HHTTCCCHHHHHHHHHCSHHHHH-HHHHHHHHHTCTTGGGCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             HHCCCCHHHHHHHHHHCCHHHHH-HHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             52495369999999819888899-99998511123343448999999999999987989999999999999999998459


Q ss_pred             C-CCHHHHHHHHHHHHHHCCC
Q ss_conf             9-9989999999999996037
Q gi|254780755|r  302 P-DSSWKKSLMEVVDFCLQRL  321 (322)
Q Consensus       302 p-~~~~k~~L~~L~~~ii~R~  321 (322)
                      | +++.|+.|..|++|+++|.
T Consensus       323 ~~~~~~k~~L~~L~~~~v~R~  343 (352)
T 3nf2_A          323 DMPDRVRDRFTALADFVVVRK  343 (352)
T ss_dssp             CCCHHHHHHHHHHHHHHCC--
T ss_pred             CCCHHHHHHHHHHHHHHHHHC
T ss_conf             999799999999999998809