HHsearch results for GI: 254780755 and protein with PDBid: 3nf2_A
>3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.20A {Streptomyces coelicolor}
Probab=100.00 E-value=0 Score=523.11 Aligned_cols=318 Identities=25% Similarity=0.348 Sum_probs=293.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH-----------CCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 7999999999999999998607787589999999996-----------79822799999999997089857866665578
Q gi|254780755|r 3 MLEDLTLKDMEKVNFLILKRICSDVEMIPDVVKYLIF-----------SGGKRLRPMLTLATALMLEYRGDNHVLLACAI 71 (322)
Q Consensus 3 ~l~~~~~~~l~~v~~~i~~~~~~~~~~l~~~~~~~~~-----------~gGKr~Rp~l~~l~~~~~~~~~~~~~~~a~~i 71 (322)
.+..++......|++.+.+.+.+.+|.+.+++.|++. .||||+||.||+++++++|+++++++++|+++
T Consensus 4 d~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GGKr~Rp~l~l~~~~~~g~~~~~~~~~A~ai 83 (352)
T 3nf2_A 4 DVTALLERGRTLATPVLRAAVDRLAPPMDTVAAYHFGWIDAQGNPADGDGGKAVRPALAVLSAEVTGAAPEVGVPGAVAV 83 (352)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTSCTTHHHHHHHHTTSBCTTSCBCCCCCCCCHHHHHHHHHHHTTTCCGGGGHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 89999999999999999999854582489999976101222047276789735999999999998198857899999999
Q ss_pred HHHHHHHHHHHHHHCHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHHHHHHCCCCC---CCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99999998752110112200110121010011023431245788887642102431---100012345677777754565
Q gi|254780755|r 72 EFIHTATLLHDDVVDDSALRRGKVAARLVWGNQTSVLVGDFLLSQAFCMVIETKSQ---EALEALSLVACTLAEGELRQL 148 (322)
Q Consensus 72 EliH~asLiHDDI~D~~~~RRg~~t~~~~~G~~~Ail~GD~l~~~a~~~l~~~~~~---~~~~~~~~~~~~l~~Gq~~d~ 148 (322)
||+|+||||||||||+|++|||+||+|.+||++.|||+||+|++.+|.++++.+.. .....++.+...+++||.+|+
T Consensus 84 EllH~asLIHDDi~D~s~~RRG~pt~h~~~G~~~Ail~Gd~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~gq~~d~ 163 (352)
T 3nf2_A 84 ELVHNFSLLHDDLMDGDEQRRHRDTVWKVHGPAQAILVGDALFALANEVLLELGTVEAGRATRRLTKASRSLIDGQAQDI 163 (352)
T ss_dssp HHHHHHHHHHHHHHHTCCEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHH
T ss_conf 99999999958776799777988060334587999997224899999999864653104677767765031225306999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 54213221035789899864335555443210001122221015799999731116898876411236700038401234
Q gi|254780755|r 149 SLSKNLDVTEEDYLHVIKSKTAVLFSAALEVSSLIAGVQNSVRQALKSYGMNLGIAFQLVDDVLDYRGEVNEMGKNIGED 228 (322)
Q Consensus 149 ~~~~~~~~s~~~y~~ii~~KTa~Lf~~~~~~ga~lag~~~~~~~~l~~fG~~lG~afQI~DD~ld~~g~~~~~GK~~g~D 228 (322)
.+..+...++++|++|+.+|||+||++||.+|++++|++++.++.+.+||+++|+||||+||++|++|+++.+|||+|+|
T Consensus 164 ~~~~~~~~~~~~y~~i~~~KTa~L~~~~~~~ga~~a~~~~~~~~~l~~~g~~lGiaFQi~DDilD~~~~~~~~GK~~g~D 243 (352)
T 3nf2_A 164 SYEHRDRVSVEECLEMEGNKTGALLACASSIGAVLGGADERTADTLEKYGYHLGLAFQAVDDLLGIWGDPDATGKQTWSD 243 (352)
T ss_dssp HHTTCSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHSSCTTHH
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCC
T ss_conf 87760235699999999867899999999987754126599999999999999999986343442038836759813650
Q ss_pred HHHCCCCCCCCHHHHCCCCCCCHHHHHHCCC-------CCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 5421365321001101431100013432036-------899989999999999974969999999999999999984208
Q gi|254780755|r 229 FRNGKPTLPVILAFQRGTKREKNFWKSTIND-------GKISVENLKKAFIIMRENRALVDTEYRAYSYGQKAKDSLRCL 301 (322)
Q Consensus 229 l~egk~Tlpii~al~~~~~~~~~~l~~~~~~-------~~~~~~~~~~i~~ll~~~gai~~~~~~~~~~~~~A~~~L~~l 301 (322)
|++||+|||+++|++..++.+++ +.+++.+ .+.+++++.++++++.++|++++++.+++.|.++|++.|+.+
T Consensus 244 l~egK~Tlpvi~al~~~~~~~k~-l~~il~~~~~~~~~~~~~~~~i~~~~~li~~~gai~~~~~~a~~~~~~A~~~L~~l 322 (352)
T 3nf2_A 244 LRQRKKSLPVVAALAAGGAASER-LGEILTADAKASDFANFSEEEFAARAALIEEAGGREWTADEARRQHTIAIEALDAV 322 (352)
T ss_dssp HHTTCCCHHHHHHHHHCSHHHHH-HHHHHHHHHTCTTGGGCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHCCCCHHHHHHHHHHCCHHHHH-HHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 52495369999999819888899-99998511123343448999999999999987989999999999999999998459
Q ss_pred C-CCHHHHHHHHHHHHHHCCC
Q ss_conf 9-9989999999999996037
Q gi|254780755|r 302 P-DSSWKKSLMEVVDFCLQRL 321 (322)
Q Consensus 302 p-~~~~k~~L~~L~~~ii~R~ 321 (322)
| +++.|+.|..|++|+++|.
T Consensus 323 ~~~~~~k~~L~~L~~~~v~R~ 343 (352)
T 3nf2_A 323 DMPDRVRDRFTALADFVVVRK 343 (352)
T ss_dssp CCCHHHHHHHHHHHHHHCC--
T ss_pred CCCHHHHHHHHHHHHHHHHHC
T ss_conf 999799999999999998809