HHsearch results for GI: 254780755 and protein with PDBid: 3pde_A
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A*
Probab=100.00 E-value=0 Score=437.09 Aligned_cols=281 Identities=27% Similarity=0.403 Sum_probs=240.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCC--CHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHHHHH
Q ss_conf 799999999999999999860778--7589999999996798227999999999970898--578666655789999999
Q gi|254780755|r 3 MLEDLTLKDMEKVNFLILKRICSD--VEMIPDVVKYLIFSGGKRLRPMLTLATALMLEYR--GDNHVLLACAIEFIHTAT 78 (322)
Q Consensus 3 ~l~~~~~~~l~~v~~~i~~~~~~~--~~~l~~~~~~~~~~gGKr~Rp~l~~l~~~~~~~~--~~~~~~~a~~iEliH~as 78 (322)
.|..+..+....|++.|.+.+.++ ++.+.++++|.+.+||||+||.|++++++++|++ +++++++|+++|++|+||
T Consensus 7 ~l~~f~~~~~~~i~~~l~~~l~~~~~~~~l~~a~~y~l~~GGKriRp~L~l~~~~~~g~~~~~~~~~~~A~avEllH~as 86 (309)
T 3pde_A 7 RLIAFEDQWVPALNAPLKQAILADSQDAQLAAAMTYSVLAGGKRLRPLLTVATMQSLGVTFVPERHWRPVMALELLHTYS 86 (309)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHTCSCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999998751699678999999887179440869999999998099977188999999999999999
Q ss_pred HHHHHH--HCHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCH-----HHHHHHHH--HHHHHHHHHH
Q ss_conf 875211--01122001101210100110234312457888876421024311000-----12345677--7777545655
Q gi|254780755|r 79 LLHDDV--VDDSALRRGKVAARLVWGNQTSVLVGDFLLSQAFCMVIETKSQEALE-----ALSLVACT--LAEGELRQLS 149 (322)
Q Consensus 79 LiHDDI--~D~~~~RRg~~t~~~~~G~~~Ail~GD~l~~~a~~~l~~~~~~~~~~-----~~~~~~~~--l~~Gq~~d~~ 149 (322)
|||||| ||+|++|||+||+|++||++.||++||++++.++.++++.+.+.... .+..+... +..||..+..
T Consensus 87 LIHDDI~~~D~s~~RRG~pt~h~~~G~~~Ail~Gd~l~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~ 166 (309)
T 3pde_A 87 LIHDDLPAMDNDALRRGEPTNHVKFGAGMATLAGDGLLTLAFQWLTATDLPATMQAALVQALATAAGPSGMVAGQAKDIQ 166 (309)
T ss_dssp HHHHHSTTTTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHSTTTHHHHHHHHHH
T ss_pred HHHCCCHHCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
T ss_conf 99858050366555577777134416099998888888789999975010137788999999999999999845201110
Q ss_pred HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHH
Q ss_conf 42132210357898998643355554432100011222210157999997311168988764112367000384012345
Q gi|254780755|r 150 LSKNLDVTEEDYLHVIKSKTAVLFSAALEVSSLIAGVQNSVRQALKSYGMNLGIAFQLVDDVLDYRGEVNEMGKNIGEDF 229 (322)
Q Consensus 150 ~~~~~~~s~~~y~~ii~~KTa~Lf~~~~~~ga~lag~~~~~~~~l~~fG~~lG~afQI~DD~ld~~g~~~~~GK~~g~Dl 229 (322)
.. +...++++|+.|++.|||+||++||.+|++++|.+++..+.+.+||+++|+||||+||++|++|+++.+|||+|+||
T Consensus 167 ~~-~~~~~~~~y~~i~~~KTa~l~~~~~~~ga~l~~~~~~~~~~l~~~g~~lG~aFQI~DD~lD~~~d~~~~GK~~g~Dl 245 (309)
T 3pde_A 167 SE-HVNLPLSQLRVLHKEKTGALLHYAVQAGLILGQAPEAQWPAYLQFADAFGLAFQIYDDILDVVSSPAEMGKATQKDA 245 (309)
T ss_dssp TT-TCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHCC-----------C
T ss_pred HH-HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCHHH
T ss_conf 01-01113999999999888888899999999981661888999998777656678858988762389788699823156
Q ss_pred HHCCCCCCCCHHHHCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf 42136532100110143110001343203689998999999999997496999999999999999998420899989999
Q gi|254780755|r 230 RNGKPTLPVILAFQRGTKREKNFWKSTINDGKISVENLKKAFIIMRENRALVDTEYRAYSYGQKAKDSLRCLPDSSWKKS 309 (322)
Q Consensus 230 ~egk~Tlpii~al~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~ll~~~gai~~~~~~~~~~~~~A~~~L~~lp~~~~k~~ 309 (322)
++||+|||++++++ .+++....+.+++++.|..+|.++.++.
T Consensus 246 ~~gK~Tlp~i~~l~--------------------------------------~a~~~~~~~~~~a~~~l~~~~~~~~~~~ 287 (309)
T 3pde_A 246 DEAKNTYPGKLGLI--------------------------------------GANQALIDTIHSGQAALQGLPTSTQRDD 287 (309)
T ss_dssp TTTSSSHHHHHCHH--------------------------------------HHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred HCCCCCHHHHHHHH--------------------------------------HHHHHHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf 72966299999999--------------------------------------9999999999999999985899758999
Q ss_pred HHHHHHH-HHCCCC
Q ss_conf 9999999-960379
Q gi|254780755|r 310 LMEVVDF-CLQRLN 322 (322)
Q Consensus 310 L~~L~~~-ii~R~~ 322 (322)
|..++++ +++|.|
T Consensus 288 L~~~~~~~~~eR~n 301 (309)
T 3pde_A 288 LAAFFSYFDTERVN 301 (309)
T ss_dssp HHGGGGGSCTTTTC
T ss_pred HHHHHHHHHHHHHH
T ss_conf 99999999999986